Query 046416
Match_columns 386
No_of_seqs 178 out of 304
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 20:55:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 7.4E-43 2.5E-47 288.9 -1.5 85 82-166 6-90 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 5.1E-42 1.7E-46 281.1 -3.4 82 84-165 3-84 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 2.1E-32 7E-37 210.5 0.1 59 83-141 2-60 (60)
4 2d8r_A THAP domain-containing 30.9 13 0.00046 29.6 0.7 15 81-95 6-20 (99)
5 2pk2_A Cyclin-T1, protein TAT; 22.4 18 0.00063 35.0 0.0 9 84-94 317-325 (358)
6 1vk6_A NADH pyrophosphatase; 1 21.7 16 0.00056 34.0 -0.5 35 100-135 101-135 (269)
7 2dt7_A Splicing factor 3A subu 19.0 25 0.00085 24.5 0.1 13 95-107 18-30 (38)
8 4a6q_A Histone deacetylase com 11.6 34 0.0012 30.1 -1.0 28 103-141 20-47 (143)
9 3n8b_A Uncharacterized protein 10.5 75 0.0026 26.5 0.7 15 30-44 10-24 (98)
10 1gh9_A 8.3 kDa protein (gene M 10.5 61 0.0021 25.3 0.1 27 108-137 6-32 (71)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=7.4e-43 Score=288.95 Aligned_cols=85 Identities=59% Similarity=1.026 Sum_probs=80.4
Q ss_pred CCCCceeeCCCcchhhcchhhhhcccccccccCCCEEEECCeehHHHHhhhccCCCccccccchHHHHHHhhhhhhcCCC
Q 046416 82 QQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 161 (386)
Q Consensus 82 ~~~~~CqVeGC~~dLs~~k~Y~rRhrVCe~H~ka~~V~v~G~~qRFCQQCsrFH~L~eFd~~kRSCR~rL~~hn~RRRk~ 161 (386)
.+.++||||||++||+.+|+||+||||||+|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||||+
T Consensus 6 ~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RRRk~ 85 (94)
T 1ul4_A 6 SGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKS 85 (94)
T ss_dssp --CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSC
T ss_pred CCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHhccC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 046416 162 TSGPF 166 (386)
Q Consensus 162 ~~~~~ 166 (386)
+++++
T Consensus 86 ~~~~~ 90 (94)
T 1ul4_A 86 SGESG 90 (94)
T ss_dssp CCC--
T ss_pred CCCcC
Confidence 99984
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=5.1e-42 Score=281.09 Aligned_cols=82 Identities=46% Similarity=0.958 Sum_probs=79.6
Q ss_pred CCceeeCCCcchhhcchhhhhcccccccccCCCEEEECCeehHHHHhhhccCCCccccccchHHHHHHhhhhhhcCCCCC
Q 046416 84 PPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPTS 163 (386)
Q Consensus 84 ~~~CqVeGC~~dLs~~k~Y~rRhrVCe~H~ka~~V~v~G~~qRFCQQCsrFH~L~eFd~~kRSCR~rL~~hn~RRRk~~~ 163 (386)
.++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||||++.
T Consensus 3 ~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~~ 82 (88)
T 1ul5_A 3 VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPV 82 (88)
T ss_dssp CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSC
T ss_pred CCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CC
Q 046416 164 GP 165 (386)
Q Consensus 164 ~~ 165 (386)
++
T Consensus 83 ~~ 84 (88)
T 1ul5_A 83 DK 84 (88)
T ss_dssp SS
T ss_pred cC
Confidence 76
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.97 E-value=2.1e-32 Score=210.50 Aligned_cols=59 Identities=58% Similarity=1.015 Sum_probs=57.2
Q ss_pred CCCceeeCCCcchhhcchhhhhcccccccccCCCEEEECCeehHHHHhhhccCCCcccc
Q 046416 83 QPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFD 141 (386)
Q Consensus 83 ~~~~CqVeGC~~dLs~~k~Y~rRhrVCe~H~ka~~V~v~G~~qRFCQQCsrFH~L~eFd 141 (386)
+.++||||||++||+.+|+||+||||||+|+|||+|+|+|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 36899999999999999999999999999999999999999999999999999999998
No 4
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=30.94 E-value=13 Score=29.64 Aligned_cols=15 Identities=27% Similarity=0.789 Sum_probs=11.1
Q ss_pred CCCCCceeeCCCcch
Q 046416 81 GQQPPRCQVEGCKVD 95 (386)
Q Consensus 81 ~~~~~~CqVeGC~~d 95 (386)
...+..|-|.||...
T Consensus 6 ~~M~~~C~v~gC~n~ 20 (99)
T 2d8r_A 6 SGMPTNCAAAGCATT 20 (99)
T ss_dssp CCCCCCCCSSSCCCS
T ss_pred CCCCCeeEeCCCCCC
Confidence 345667999999864
No 5
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=22.35 E-value=18 Score=35.03 Aligned_cols=9 Identities=33% Similarity=0.836 Sum_probs=0.0
Q ss_pred CCceeeCCCcc
Q 046416 84 PPRCQVEGCKV 94 (386)
Q Consensus 84 ~~~CqVeGC~~ 94 (386)
.--||| |-.
T Consensus 317 ~~~~~~--~~~ 325 (358)
T 2pk2_A 317 NYHCQL--CFL 325 (358)
T ss_dssp -----------
T ss_pred ceecHH--Hhc
Confidence 345666 543
No 6
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=21.74 E-value=16 Score=34.03 Aligned_cols=35 Identities=20% Similarity=0.447 Sum_probs=26.5
Q ss_pred hhhhhcccccccccCCCEEEECCeehHHHHhhhccC
Q 046416 100 KAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFH 135 (386)
Q Consensus 100 k~Y~rRhrVCe~H~ka~~V~v~G~~qRFCQQCsrFH 135 (386)
..+++++|-|..+- ++.+..++...+.|..|+..|
T Consensus 101 ~~w~~~~~fC~~CG-~~~~~~~~~~~~~C~~C~~~~ 135 (269)
T 1vk6_A 101 AEFYRSHKYCGYCG-HEMYPSKTEWAMLCSHCRERY 135 (269)
T ss_dssp HHHHHTTSBCTTTC-CBEEECSSSSCEEESSSSCEE
T ss_pred HhhhhcCCccccCC-CcCccCCCceeeeCCCCCCEe
Confidence 46788999998754 556667777889999997644
No 7
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=19.04 E-value=25 Score=24.46 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=8.9
Q ss_pred hhhcchhhhhccc
Q 046416 95 DLSDAKAYYSRHK 107 (386)
Q Consensus 95 dLs~~k~Y~rRhr 107 (386)
.|..+|+||+||-
T Consensus 18 rlk~Ike~Hrr~P 30 (38)
T 2dt7_A 18 RLKQIKEFHRKHP 30 (38)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCC
Confidence 3566778888773
No 8
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=11.61 E-value=34 Score=30.15 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=22.4
Q ss_pred hhcccccccccCCCEEEECCeehHHHHhhhccCCCcccc
Q 046416 103 YSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFD 141 (386)
Q Consensus 103 ~rRhrVCe~H~ka~~V~v~G~~qRFCQQCsrFH~L~eFd 141 (386)
--|.++|+.+.+ -||.+=++||.++||.
T Consensus 20 idRektcPfLLR-----------vF~~~ng~hh~~~eF~ 47 (143)
T 4a6q_A 20 IDREKTCPLLLR-----------VFTTNNGRHHRMDEFS 47 (143)
T ss_dssp CCGGGSCCEEEE-----------EEEESSSSCCCGGGGC
T ss_pred ccccCCCCeEEE-----------EEecCCCCCCCHHHcc
Confidence 458899999764 4776657999999997
No 9
>3n8b_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, whirly fold, RNA binding, binding, nucleic acid binding protein; HET: MSE; 1.90A {Borrelia burgdorferi}
Probab=10.49 E-value=75 Score=26.53 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=11.7
Q ss_pred ccccCCeeeeccCCC
Q 046416 30 GLKFGKKIYFEDVGT 44 (386)
Q Consensus 30 gLk~G~r~yfed~~~ 44 (386)
.++-||||||=|+-.
T Consensus 10 v~~agkRTYFFDVK~ 24 (98)
T 3n8b_A 10 MFTESERTYFMNVKE 24 (98)
T ss_dssp ECCSSSEEEEEEEEE
T ss_pred HHhcCCeEEEEEeec
Confidence 457799999988743
No 10
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=10.46 E-value=61 Score=25.26 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=21.0
Q ss_pred ccccccCCCEEEECCeehHHHHhhhccCCC
Q 046416 108 VCGMHSKSPVVTVAGLEQRFCQQCSRFHQL 137 (386)
Q Consensus 108 VCe~H~ka~~V~v~G~~qRFCQQCsrFH~L 137 (386)
.|+ +....++-++....-|+ |++-|.+
T Consensus 6 ~C~--C~~~~~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 6 RCD--CGRALYSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EET--TSCCEEEETTCSEEEET-TTEEEEC
T ss_pred ECC--CCCEEEEcCCCcEEECC-CCCeeee
Confidence 476 66668888899999998 9976543
Done!