Query 046417
Match_columns 595
No_of_seqs 172 out of 369
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 11:53:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2023 Nuclear transport rece 100.0 1.2E-33 2.6E-38 308.4 16.0 236 35-279 371-615 (885)
2 KOG2171 Karyopherin (importin) 100.0 3.4E-29 7.3E-34 287.6 26.2 275 17-293 292-598 (1075)
3 KOG2023 Nuclear transport rece 99.7 8.2E-18 1.8E-22 185.2 11.9 242 36-288 191-462 (885)
4 KOG1241 Karyopherin (importin) 99.4 9E-12 1.9E-16 139.9 22.6 253 17-269 318-689 (859)
5 KOG2171 Karyopherin (importin) 99.4 2.5E-11 5.4E-16 141.5 26.9 273 13-288 74-417 (1075)
6 COG5215 KAP95 Karyopherin (imp 99.2 1E-09 2.3E-14 120.5 21.7 252 18-269 321-689 (858)
7 PRK09687 putative lyase; Provi 99.1 1.4E-09 3.1E-14 112.9 17.0 199 17-247 18-220 (280)
8 PRK13800 putative oxidoreducta 99.0 1E-08 2.2E-13 121.7 20.5 214 30-287 630-865 (897)
9 KOG1242 Protein containing ada 99.0 1.2E-08 2.6E-13 113.5 19.1 242 18-265 213-462 (569)
10 PRK09687 putative lyase; Provi 99.0 2.5E-08 5.4E-13 103.7 19.5 169 48-246 18-186 (280)
11 KOG1242 Protein containing ada 98.9 2E-07 4.4E-12 103.9 24.8 271 21-293 137-449 (569)
12 PF12348 CLASP_N: CLASP N term 98.9 2.8E-08 6E-13 98.6 15.1 193 55-253 5-211 (228)
13 PRK13800 putative oxidoreducta 98.8 6.8E-08 1.5E-12 114.8 18.0 206 35-286 668-896 (897)
14 KOG1241 Karyopherin (importin) 98.8 4E-07 8.7E-12 103.2 21.8 267 17-284 398-758 (859)
15 PF13513 HEAT_EZ: HEAT-like re 98.8 4.3E-09 9.2E-14 82.5 3.6 55 71-125 1-55 (55)
16 KOG0213 Splicing factor 3b, su 98.8 2.7E-07 5.9E-12 104.1 17.8 219 35-256 732-964 (1172)
17 PF01602 Adaptin_N: Adaptin N 98.7 7.6E-07 1.7E-11 98.2 20.9 248 18-284 76-328 (526)
18 PF12755 Vac14_Fab1_bd: Vacuol 98.7 7E-08 1.5E-12 85.4 9.5 91 73-165 2-95 (97)
19 KOG1059 Vesicle coat complex A 98.7 6.4E-07 1.4E-11 101.1 17.6 206 66-291 153-364 (877)
20 PF12348 CLASP_N: CLASP N term 98.6 1.9E-06 4E-11 85.5 16.8 174 35-210 23-209 (228)
21 KOG2032 Uncharacterized conser 98.5 2E-05 4.3E-10 86.5 23.0 258 28-288 188-530 (533)
22 KOG0212 Uncharacterized conser 98.5 4.4E-06 9.5E-11 92.5 17.7 255 35-293 16-283 (675)
23 KOG0166 Karyopherin (importin) 98.5 2.2E-06 4.7E-11 95.2 15.5 246 19-271 110-379 (514)
24 KOG1240 Protein kinase contain 98.4 8.3E-06 1.8E-10 96.3 18.4 189 55-251 424-649 (1431)
25 PLN03200 cellulose synthase-in 98.4 2.3E-05 4.9E-10 98.6 22.4 241 30-286 415-677 (2102)
26 KOG0915 Uncharacterized conser 98.4 7.7E-06 1.7E-10 98.4 17.1 224 39-266 941-1178(1702)
27 KOG0915 Uncharacterized conser 98.4 4.8E-06 1E-10 100.1 14.9 234 53-292 814-1113(1702)
28 PF12755 Vac14_Fab1_bd: Vacuol 98.4 3.1E-06 6.7E-11 75.0 10.3 93 197-289 5-97 (97)
29 KOG0212 Uncharacterized conser 98.4 4.9E-05 1.1E-09 84.5 21.5 267 20-293 123-407 (675)
30 PLN03200 cellulose synthase-in 98.3 5E-05 1.1E-09 95.7 23.8 252 31-289 542-811 (2102)
31 KOG0166 Karyopherin (importin) 98.3 5.9E-06 1.3E-10 91.8 14.2 216 32-251 79-311 (514)
32 PF01602 Adaptin_N: Adaptin N 98.3 6.1E-05 1.3E-09 83.2 21.9 176 57-247 42-220 (526)
33 PF10508 Proteasom_PSMB: Prote 98.3 0.00011 2.4E-09 82.4 23.8 229 18-251 37-323 (503)
34 COG5215 KAP95 Karyopherin (imp 98.3 3E-05 6.5E-10 86.2 17.6 198 70-267 513-730 (858)
35 KOG0211 Protein phosphatase 2A 98.3 5E-05 1.1E-09 88.4 20.2 270 17-293 232-551 (759)
36 KOG1824 TATA-binding protein-i 98.2 4.5E-05 9.8E-10 88.6 18.3 221 17-250 856-1097(1233)
37 PF10508 Proteasom_PSMB: Prote 98.2 0.00016 3.4E-09 81.2 22.4 218 18-248 3-231 (503)
38 KOG0213 Splicing factor 3b, su 98.2 5.3E-05 1.2E-09 86.2 16.9 246 34-293 856-1111(1172)
39 PF12460 MMS19_C: RNAPII trans 98.1 0.00017 3.6E-09 78.9 19.6 209 15-226 186-413 (415)
40 PF13646 HEAT_2: HEAT repeats; 98.1 2.3E-05 5E-10 65.8 9.6 88 55-162 1-88 (88)
41 KOG1824 TATA-binding protein-i 98.1 0.00034 7.3E-09 81.6 21.5 248 39-294 105-408 (1233)
42 cd00020 ARM Armadillo/beta-cat 98.0 2.1E-05 4.5E-10 68.5 7.3 109 53-166 7-120 (120)
43 KOG1820 Microtubule-associated 98.0 0.00038 8.2E-09 81.8 19.5 201 53-260 249-456 (815)
44 KOG1991 Nuclear transport rece 98.0 0.00093 2E-08 78.5 22.0 209 39-250 392-626 (1010)
45 KOG2259 Uncharacterized conser 97.9 0.00031 6.7E-09 79.5 15.9 216 57-288 198-474 (823)
46 COG1413 FOG: HEAT repeat [Ener 97.9 0.00079 1.7E-08 70.7 18.1 200 39-287 29-240 (335)
47 PTZ00429 beta-adaptin; Provisi 97.9 0.0062 1.4E-07 71.6 26.9 242 42-291 125-436 (746)
48 PF12717 Cnd1: non-SMC mitotic 97.8 0.00083 1.8E-08 65.2 16.2 115 70-190 1-117 (178)
49 PF05004 IFRD: Interferon-rela 97.8 0.0028 6.1E-08 67.1 21.1 195 16-210 38-260 (309)
50 COG1413 FOG: HEAT repeat [Ener 97.8 0.0028 6.1E-08 66.5 20.9 169 37-244 89-269 (335)
51 KOG1248 Uncharacterized conser 97.8 0.0083 1.8E-07 71.9 25.8 270 18-287 608-896 (1176)
52 cd00020 ARM Armadillo/beta-cat 97.7 0.00019 4.1E-09 62.5 8.6 110 137-247 8-119 (120)
53 PTZ00429 beta-adaptin; Provisi 97.7 0.0011 2.3E-08 77.8 16.7 133 65-208 76-209 (746)
54 COG5181 HSH155 U2 snRNP splice 97.6 0.0021 4.7E-08 72.4 17.7 208 76-293 707-916 (975)
55 TIGR02270 conserved hypothetic 97.6 0.0019 4E-08 71.1 17.2 104 39-165 103-206 (410)
56 KOG0211 Protein phosphatase 2A 97.6 0.0025 5.5E-08 74.6 19.2 229 53-289 433-664 (759)
57 KOG2956 CLIP-associating prote 97.5 0.005 1.1E-07 67.8 17.8 207 46-260 273-490 (516)
58 PF12460 MMS19_C: RNAPII trans 97.5 0.0057 1.2E-07 67.0 18.5 219 43-266 171-412 (415)
59 KOG1240 Protein kinase contain 97.5 0.0051 1.1E-07 73.7 18.8 72 179-251 657-728 (1431)
60 KOG2956 CLIP-associating prote 97.5 0.0036 7.9E-08 68.9 16.2 193 22-220 287-491 (516)
61 KOG4224 Armadillo repeat prote 97.4 0.0024 5.2E-08 68.5 14.2 249 27-286 175-443 (550)
62 KOG2933 Uncharacterized conser 97.4 0.0014 3.1E-08 68.9 12.3 121 59-182 90-213 (334)
63 PF02985 HEAT: HEAT repeat; I 97.4 0.00017 3.6E-09 50.6 3.7 31 99-129 1-31 (31)
64 KOG1967 DNA repair/transcripti 97.4 0.00088 1.9E-08 78.2 10.6 136 158-293 888-1028(1030)
65 KOG4224 Armadillo repeat prote 97.4 0.0052 1.1E-07 66.0 15.6 222 22-250 211-448 (550)
66 KOG1248 Uncharacterized conser 97.3 0.033 7.2E-07 67.0 23.2 231 35-266 670-918 (1176)
67 TIGR02270 conserved hypothetic 97.3 0.0035 7.5E-08 68.9 14.1 153 97-288 53-206 (410)
68 PF13646 HEAT_2: HEAT repeats; 97.3 0.0022 4.7E-08 53.8 9.7 87 180-285 1-88 (88)
69 PF12717 Cnd1: non-SMC mitotic 97.3 0.0068 1.5E-07 58.8 14.4 146 38-187 7-159 (178)
70 PF05004 IFRD: Interferon-rela 97.3 0.033 7.2E-07 59.1 20.7 192 55-251 45-260 (309)
71 COG5064 SRP1 Karyopherin (impo 97.3 0.0011 2.4E-08 70.4 9.2 223 39-268 135-381 (526)
72 PF13251 DUF4042: Domain of un 97.2 0.0032 6.9E-08 62.0 11.1 136 73-208 2-175 (182)
73 COG5181 HSH155 U2 snRNP splice 97.1 0.0035 7.6E-08 70.8 11.6 206 35-252 184-391 (975)
74 PF02985 HEAT: HEAT repeat; I 96.9 0.0011 2.4E-08 46.4 3.8 30 220-249 1-30 (31)
75 KOG1943 Beta-tubulin folding c 96.9 0.19 4.2E-06 60.3 23.6 259 21-288 341-663 (1133)
76 PF04826 Arm_2: Armadillo-like 96.9 0.014 3E-07 60.4 12.9 195 49-251 8-208 (254)
77 PF10274 ParcG: Parkin co-regu 96.7 0.016 3.4E-07 57.2 11.2 113 178-293 38-168 (183)
78 PF13513 HEAT_EZ: HEAT-like re 96.7 0.0026 5.7E-08 49.5 4.7 54 233-286 1-54 (55)
79 PF14500 MMS19_N: Dos2-interac 96.6 0.23 5E-06 51.6 19.2 197 60-266 2-256 (262)
80 KOG1020 Sister chromatid cohes 96.4 0.18 3.8E-06 62.4 19.3 147 32-188 793-941 (1692)
81 KOG1062 Vesicle coat complex A 96.2 0.23 5E-06 58.1 18.1 81 42-126 127-207 (866)
82 smart00802 UME Domain in UVSB 96.2 0.023 4.9E-07 51.5 8.1 58 72-131 30-87 (107)
83 KOG2022 Nuclear transport rece 96.2 0.38 8.2E-06 56.9 19.7 192 35-229 439-642 (982)
84 PF08167 RIX1: rRNA processing 96.2 0.12 2.5E-06 49.9 13.4 127 53-179 21-156 (165)
85 PF12719 Cnd3: Nuclear condens 96.1 0.3 6.4E-06 51.2 17.4 125 38-167 6-144 (298)
86 COG5064 SRP1 Karyopherin (impo 96.1 0.07 1.5E-06 57.2 12.2 192 54-249 115-315 (526)
87 KOG1078 Vesicle coat complex C 96.1 0.2 4.3E-06 58.5 16.5 224 55-288 243-531 (865)
88 KOG2274 Predicted importin 9 [ 96.1 0.28 6.1E-06 58.0 17.9 193 54-249 487-690 (1005)
89 PF08064 UME: UME (NUC010) dom 96.0 0.032 7E-07 50.2 8.4 59 71-131 29-87 (107)
90 KOG1060 Vesicle coat complex A 96.0 0.67 1.5E-05 54.4 20.5 67 52-122 138-204 (968)
91 KOG1943 Beta-tubulin folding c 96.0 0.36 7.8E-06 58.1 18.9 209 73-289 651-881 (1133)
92 KOG1820 Microtubule-associated 96.0 0.23 5E-06 59.1 17.0 187 96-292 251-446 (815)
93 PF08506 Cse1: Cse1; InterPro 96.0 0.018 4E-07 62.5 7.6 130 31-161 222-370 (370)
94 COG5096 Vesicle coat complex, 95.9 0.13 2.8E-06 60.4 14.5 149 41-202 38-190 (757)
95 KOG1058 Vesicle coat complex C 95.8 0.46 1E-05 55.4 18.1 190 52-250 129-424 (948)
96 COG5240 SEC21 Vesicle coat com 95.8 0.53 1.1E-05 53.7 17.9 181 55-250 262-444 (898)
97 KOG4653 Uncharacterized conser 95.7 1.1 2.4E-05 53.1 20.4 226 21-251 727-967 (982)
98 KOG2933 Uncharacterized conser 95.6 0.11 2.4E-06 55.0 11.3 169 22-195 89-265 (334)
99 PF03378 CAS_CSE1: CAS/CSE pro 95.6 0.46 1E-05 52.9 16.8 221 55-279 28-263 (435)
100 KOG4653 Uncharacterized conser 95.6 1.5 3.4E-05 51.9 21.2 195 55-256 726-926 (982)
101 COG5656 SXM1 Importin, protein 95.5 3.3 7.2E-05 48.7 23.2 232 55-293 410-692 (970)
102 KOG2022 Nuclear transport rece 95.3 4.1 8.9E-05 48.7 23.6 268 18-296 504-830 (982)
103 PF13251 DUF4042: Domain of un 95.3 0.24 5.1E-06 49.0 11.8 137 114-250 2-176 (182)
104 PF04826 Arm_2: Armadillo-like 95.2 0.42 9.1E-06 49.5 14.0 180 101-290 15-203 (254)
105 KOG1967 DNA repair/transcripti 95.2 0.15 3.3E-06 60.3 11.6 178 17-203 814-1020(1030)
106 KOG0803 Predicted E3 ubiquitin 95.1 1.2 2.5E-05 55.6 19.5 218 14-232 34-289 (1312)
107 PF10274 ParcG: Parkin co-regu 95.1 0.19 4.2E-06 49.7 10.6 115 136-251 38-167 (183)
108 COG5240 SEC21 Vesicle coat com 95.1 1.3 2.8E-05 50.7 18.0 238 40-288 285-554 (898)
109 KOG2032 Uncharacterized conser 95.0 0.57 1.2E-05 52.4 14.9 57 55-111 256-312 (533)
110 KOG1992 Nuclear export recepto 95.0 0.63 1.4E-05 54.8 15.7 235 31-266 373-645 (960)
111 PF10363 DUF2435: Protein of u 94.9 0.15 3.2E-06 45.0 8.2 75 66-145 12-86 (92)
112 cd08050 TAF6 TATA Binding Prot 94.8 0.098 2.1E-06 56.3 8.3 102 175-276 207-325 (343)
113 KOG0567 HEAT repeat-containing 94.6 1.3 2.8E-05 46.4 15.3 206 52-291 66-282 (289)
114 KOG0392 SNF2 family DNA-depend 94.6 0.32 6.9E-06 59.4 12.4 122 176-300 814-936 (1549)
115 KOG1059 Vesicle coat complex A 94.5 5 0.00011 47.1 21.2 121 18-146 252-381 (877)
116 KOG1991 Nuclear transport rece 94.5 1.5 3.2E-05 52.7 17.4 175 76-259 391-584 (1010)
117 PF11865 DUF3385: Domain of un 94.4 0.42 9.1E-06 46.0 10.8 144 97-250 9-159 (160)
118 KOG1060 Vesicle coat complex A 94.3 3.3 7.1E-05 49.0 19.2 114 68-189 119-232 (968)
119 COG5095 TAF6 Transcription ini 94.3 0.24 5.2E-06 52.5 9.4 87 175-261 227-329 (450)
120 PF12530 DUF3730: Protein of u 94.3 4.5 9.7E-05 41.2 18.5 171 27-207 9-185 (234)
121 KOG2062 26S proteasome regulat 94.1 0.38 8.3E-06 56.0 11.3 64 218-287 587-651 (929)
122 KOG2137 Protein kinase [Signal 94.0 9.1 0.0002 44.9 22.1 130 96-231 387-520 (700)
123 PF11865 DUF3385: Domain of un 94.0 0.5 1.1E-05 45.5 10.4 143 53-207 10-157 (160)
124 KOG1993 Nuclear transport rece 93.9 2.3 4.9E-05 50.3 16.8 214 38-258 416-657 (978)
125 smart00638 LPD_N Lipoprotein N 93.8 2.6 5.6E-05 48.1 17.5 154 35-200 372-538 (574)
126 PF12231 Rif1_N: Rap1-interact 93.8 12 0.00027 40.7 24.7 208 55-285 131-348 (372)
127 PF12719 Cnd3: Nuclear condens 93.7 4.4 9.6E-05 42.5 17.8 196 77-293 3-211 (298)
128 KOG1517 Guanine nucleotide bin 93.7 3.2 7E-05 50.4 18.0 67 51-123 470-537 (1387)
129 PF08167 RIX1: rRNA processing 93.7 1.1 2.3E-05 43.4 12.1 134 93-228 20-164 (165)
130 KOG2259 Uncharacterized conser 93.7 1.5 3.2E-05 50.9 14.7 136 107-255 382-518 (823)
131 COG5116 RPN2 26S proteasome re 93.6 0.61 1.3E-05 53.1 11.5 122 55-191 553-675 (926)
132 KOG2025 Chromosome condensatio 93.4 3.8 8.3E-05 48.0 17.4 197 42-246 65-292 (892)
133 KOG2160 Armadillo/beta-catenin 93.1 3.5 7.5E-05 44.6 15.8 183 67-250 93-284 (342)
134 KOG0168 Putative ubiquitin fus 93.1 2.2 4.9E-05 50.6 15.2 131 55-188 213-390 (1051)
135 PF01347 Vitellogenin_N: Lipop 92.9 9.4 0.0002 43.7 20.3 188 40-251 349-556 (618)
136 KOG1061 Vesicle coat complex A 92.8 2 4.4E-05 50.3 14.4 207 17-250 16-230 (734)
137 KOG1020 Sister chromatid cohes 92.7 24 0.00051 44.8 23.6 110 14-125 827-958 (1692)
138 KOG2025 Chromosome condensatio 92.7 7 0.00015 45.9 18.2 124 75-203 60-189 (892)
139 KOG1062 Vesicle coat complex A 92.4 2.8 6E-05 49.5 14.9 202 55-265 105-359 (866)
140 KOG2160 Armadillo/beta-catenin 92.4 4.6 9.9E-05 43.7 15.6 172 23-207 86-282 (342)
141 PF12765 Cohesin_HEAT: HEAT re 92.4 0.15 3.2E-06 38.5 3.3 40 80-121 2-41 (42)
142 KOG1837 Uncharacterized conser 92.2 4.5 9.7E-05 50.9 16.9 217 35-257 1365-1620(1621)
143 PF10363 DUF2435: Protein of u 92.2 1.4 3E-05 38.9 9.5 74 21-94 3-80 (92)
144 PF05918 API5: Apoptosis inhib 92.1 2.7 5.9E-05 48.3 14.2 92 31-127 34-125 (556)
145 KOG0414 Chromosome condensatio 92.1 4 8.6E-05 50.1 16.1 170 55-231 917-1104(1251)
146 COG5096 Vesicle coat complex, 91.8 3 6.5E-05 49.4 14.4 138 35-185 71-211 (757)
147 PF00514 Arm: Armadillo/beta-c 91.7 0.25 5.4E-06 36.3 3.7 30 98-127 12-41 (41)
148 PF08064 UME: UME (NUC010) dom 91.6 1.7 3.6E-05 39.2 9.6 90 174-265 7-101 (107)
149 KOG2081 Nuclear transport regu 91.5 3.9 8.5E-05 46.6 14.4 149 35-189 368-521 (559)
150 PF12074 DUF3554: Domain of un 91.3 17 0.00038 38.6 18.6 190 55-253 24-240 (339)
151 PF10521 DUF2454: Protein of u 91.1 2.8 6E-05 43.9 12.1 144 89-232 110-278 (282)
152 KOG1993 Nuclear transport rece 91.1 24 0.00051 42.3 20.2 171 17-189 521-710 (978)
153 KOG2549 Transcription initiati 91.1 2.5 5.4E-05 48.1 12.3 127 136-272 207-351 (576)
154 PF14500 MMS19_N: Dos2-interac 90.7 14 0.00031 38.5 16.8 174 27-207 48-237 (262)
155 KOG1822 Uncharacterized conser 90.6 19 0.00041 46.5 20.1 135 51-187 869-1009(2067)
156 KOG1243 Protein kinase [Genera 90.6 0.6 1.3E-05 54.1 7.1 176 18-199 326-507 (690)
157 KOG2274 Predicted importin 9 [ 90.4 27 0.00059 42.2 20.2 241 23-266 365-623 (1005)
158 PF03224 V-ATPase_H_N: V-ATPas 90.1 0.67 1.4E-05 48.9 6.6 187 16-206 53-268 (312)
159 KOG4535 HEAT and armadillo rep 89.9 2.9 6.3E-05 47.1 11.3 194 55-251 392-606 (728)
160 smart00638 LPD_N Lipoprotein N 89.6 11 0.00023 43.2 16.2 20 111-130 410-429 (574)
161 KOG0413 Uncharacterized conser 89.2 22 0.00047 43.4 18.1 66 55-127 970-1035(1529)
162 PF04118 Dopey_N: Dopey, N-ter 89.2 7 0.00015 41.8 13.3 193 6-203 42-250 (307)
163 cd00197 VHS_ENTH_ANTH VHS, ENT 89.0 4.8 0.0001 36.1 10.4 75 215-289 33-115 (115)
164 KOG4524 Uncharacterized conser 88.9 52 0.0011 40.2 21.1 274 18-291 586-925 (1014)
165 COG5218 YCG1 Chromosome conden 88.6 7.5 0.00016 44.9 13.5 101 55-158 89-189 (885)
166 KOG2149 Uncharacterized conser 88.5 5 0.00011 44.1 11.9 128 55-187 60-191 (393)
167 PF12397 U3snoRNP10: U3 small 88.4 8.8 0.00019 34.7 11.8 70 95-167 3-75 (121)
168 KOG1078 Vesicle coat complex C 88.3 24 0.00052 42.0 17.6 211 52-266 277-552 (865)
169 KOG2137 Protein kinase [Signal 88.0 15 0.00033 43.1 15.9 124 19-145 350-476 (700)
170 PF03378 CAS_CSE1: CAS/CSE pro 87.9 49 0.0011 37.1 19.5 238 11-251 19-275 (435)
171 KOG2021 Nuclear mRNA export fa 87.6 46 0.00099 39.8 19.2 151 35-187 414-585 (980)
172 smart00802 UME Domain in UVSB 87.5 3.9 8.4E-05 37.1 8.7 90 174-265 7-101 (107)
173 PF08569 Mo25: Mo25-like; Int 87.4 47 0.001 36.0 22.8 247 15-272 11-313 (335)
174 KOG2062 26S proteasome regulat 87.2 11 0.00024 44.5 14.0 159 66-242 528-690 (929)
175 COG5656 SXM1 Importin, protein 87.1 76 0.0016 38.0 20.8 203 57-266 503-776 (970)
176 PF08389 Xpo1: Exportin 1-like 87.0 1.6 3.5E-05 39.7 6.2 88 71-161 39-148 (148)
177 PF12074 DUF3554: Domain of un 86.5 41 0.00088 35.8 17.3 204 19-228 19-253 (339)
178 cd08050 TAF6 TATA Binding Prot 86.4 5.7 0.00012 42.9 10.9 125 42-166 198-340 (343)
179 KOG1077 Vesicle coat complex A 86.0 83 0.0018 37.5 21.2 237 17-266 107-378 (938)
180 PF12054 DUF3535: Domain of un 85.9 43 0.00094 37.5 17.7 55 35-89 103-158 (441)
181 COG5116 RPN2 26S proteasome re 85.7 15 0.00033 42.4 13.8 108 61-179 520-629 (926)
182 COG5095 TAF6 Transcription ini 85.5 28 0.0006 37.5 14.8 138 163-304 262-423 (450)
183 KOG4413 26S proteasome regulat 85.5 39 0.00084 36.9 16.0 196 50-253 251-482 (524)
184 PF08623 TIP120: TATA-binding 85.5 5.3 0.00011 39.2 9.1 97 90-188 1-116 (169)
185 KOG0392 SNF2 family DNA-depend 85.5 11 0.00025 46.8 13.4 185 24-210 127-328 (1549)
186 PF03224 V-ATPase_H_N: V-ATPas 85.4 43 0.00093 35.3 16.7 148 137-293 106-270 (312)
187 PF01347 Vitellogenin_N: Lipop 85.2 25 0.00054 40.4 15.9 161 73-248 341-519 (618)
188 KOG1949 Uncharacterized conser 84.8 41 0.00088 40.0 16.8 144 60-208 177-332 (1005)
189 PF04510 DUF577: Family of unk 84.3 7.3 0.00016 38.4 9.4 88 18-112 3-98 (174)
190 KOG4535 HEAT and armadillo rep 84.0 16 0.00035 41.4 12.9 234 55-292 255-516 (728)
191 KOG1293 Proteins containing ar 84.0 58 0.0013 38.2 17.6 144 21-168 379-535 (678)
192 PF05804 KAP: Kinesin-associat 83.7 86 0.0019 37.4 19.5 239 32-289 383-649 (708)
193 KOG1293 Proteins containing ar 83.6 33 0.00072 40.1 15.5 147 100-249 381-534 (678)
194 PF05536 Neurochondrin: Neuroc 83.1 96 0.0021 35.8 21.0 194 57-252 53-265 (543)
195 KOG1061 Vesicle coat complex A 82.8 19 0.00042 42.6 13.5 54 230-291 326-381 (734)
196 PF06685 DUF1186: Protein of u 82.8 65 0.0014 33.6 17.6 129 88-231 28-166 (249)
197 PF05804 KAP: Kinesin-associat 82.6 9.1 0.0002 45.4 11.0 161 106-273 258-428 (708)
198 KOG2842 Interferon-related pro 82.5 39 0.00083 37.4 14.8 200 71-271 74-300 (427)
199 KOG4413 26S proteasome regulat 82.3 83 0.0018 34.5 19.2 95 34-128 58-158 (524)
200 KOG1243 Protein kinase [Genera 82.2 4.9 0.00011 46.9 8.5 197 35-242 307-509 (690)
201 KOG0414 Chromosome condensatio 82.1 7.6 0.00016 47.8 10.2 142 137-293 919-1065(1251)
202 PLN03076 ARF guanine nucleotid 82.1 95 0.0021 40.8 20.3 206 42-247 1071-1298(1780)
203 KOG1992 Nuclear export recepto 81.6 69 0.0015 38.7 17.3 225 35-273 514-777 (960)
204 PF10521 DUF2454: Protein of u 81.2 30 0.00065 36.2 13.3 138 55-192 117-279 (282)
205 PF10350 DUF2428: Putative dea 81.0 38 0.00083 34.9 13.9 164 71-234 61-255 (255)
206 PF06685 DUF1186: Protein of u 80.8 32 0.00068 35.9 13.1 116 19-149 39-166 (249)
207 PLN03076 ARF guanine nucleotid 80.8 2E+02 0.0044 38.0 26.3 266 23-293 1138-1493(1780)
208 KOG0891 DNA-dependent protein 80.1 33 0.00071 45.9 15.5 218 32-260 106-338 (2341)
209 COG5218 YCG1 Chromosome conden 79.8 18 0.0004 41.9 11.6 118 176-295 47-167 (885)
210 PF12830 Nipped-B_C: Sister ch 78.7 67 0.0015 31.5 14.2 135 55-208 6-141 (187)
211 PF01603 B56: Protein phosphat 78.4 1.2E+02 0.0025 33.7 23.4 275 9-290 7-324 (409)
212 cd00256 VATPase_H VATPase_H, r 78.4 1.2E+02 0.0027 34.1 18.1 184 17-208 52-259 (429)
213 KOG1822 Uncharacterized conser 78.4 99 0.0021 40.5 18.1 149 79-229 854-1010(2067)
214 KOG0168 Putative ubiquitin fus 78.2 1.5E+02 0.0033 36.1 18.6 155 89-250 201-366 (1051)
215 PF07571 DUF1546: Protein of u 77.8 7 0.00015 34.3 6.2 62 69-130 18-81 (92)
216 PF12530 DUF3730: Protein of u 77.8 85 0.0019 31.9 19.0 165 68-249 12-186 (234)
217 smart00185 ARM Armadillo/beta- 77.8 2.5 5.3E-05 30.1 2.9 28 99-126 13-40 (41)
218 KOG1949 Uncharacterized conser 77.7 65 0.0014 38.4 15.3 186 106-293 138-335 (1005)
219 PF08389 Xpo1: Exportin 1-like 77.3 19 0.0004 32.7 9.2 125 113-243 3-148 (148)
220 KOG2021 Nuclear mRNA export fa 77.2 69 0.0015 38.4 15.4 84 93-180 187-276 (980)
221 KOG3961 Uncharacterized conser 76.9 21 0.00046 36.6 10.0 102 188-293 127-243 (262)
222 PF13001 Ecm29: Proteasome sta 76.5 43 0.00094 38.0 13.7 134 17-167 297-444 (501)
223 PF01603 B56: Protein phosphat 76.5 1.3E+02 0.0028 33.3 23.7 203 74-291 192-405 (409)
224 PF13001 Ecm29: Proteasome sta 76.0 19 0.00041 40.9 10.7 180 98-293 238-447 (501)
225 PF11919 DUF3437: Domain of un 75.7 6.4 0.00014 34.7 5.4 54 72-126 4-57 (90)
226 PF11701 UNC45-central: Myosin 75.4 5.1 0.00011 38.4 5.1 134 110-245 17-156 (157)
227 PF04388 Hamartin: Hamartin pr 74.5 40 0.00086 39.9 13.0 131 46-191 28-165 (668)
228 PF08506 Cse1: Cse1; InterPro 73.9 1.4E+02 0.0031 32.7 17.2 262 18-284 31-370 (370)
229 PF05327 RRN3: RNA polymerase 73.8 88 0.0019 36.1 15.4 139 40-186 57-213 (563)
230 PF12830 Nipped-B_C: Sister ch 73.7 39 0.00084 33.2 11.0 75 175-253 5-79 (187)
231 KOG0891 DNA-dependent protein 73.5 54 0.0012 44.0 14.8 228 26-259 450-688 (2341)
232 PF02854 MIF4G: MIF4G domain; 73.3 74 0.0016 30.1 12.6 83 21-105 2-85 (209)
233 KOG4500 Rho/Rac GTPase guanine 73.0 1.7E+02 0.0038 33.2 17.9 71 57-127 315-390 (604)
234 KOG1848 Uncharacterized conser 72.3 2.8E+02 0.0062 35.6 19.4 262 17-287 799-1130(1610)
235 PF11698 V-ATPase_H_C: V-ATPas 72.0 8.1 0.00017 35.9 5.3 68 98-165 43-114 (119)
236 PF14631 FancD2: Fanconi anaem 71.9 2.1E+02 0.0046 37.1 19.2 88 18-112 207-295 (1426)
237 KOG0567 HEAT repeat-containing 71.6 27 0.00058 36.9 9.5 59 55-125 220-278 (289)
238 KOG0946 ER-Golgi vesicle-tethe 69.7 1.8E+02 0.0038 35.3 16.3 71 55-129 124-197 (970)
239 KOG2549 Transcription initiati 69.4 1.1E+02 0.0023 35.5 14.3 98 90-187 280-392 (576)
240 KOG1837 Uncharacterized conser 68.7 15 0.00033 46.5 8.2 75 55-129 1539-1613(1621)
241 PF08623 TIP120: TATA-binding 67.9 13 0.00029 36.4 6.2 56 71-129 41-96 (169)
242 PF00514 Arm: Armadillo/beta-c 67.8 11 0.00023 27.5 4.3 28 220-247 13-40 (41)
243 PF11864 DUF3384: Domain of un 67.6 1.5E+02 0.0033 33.3 15.3 45 70-114 269-317 (464)
244 PF00790 VHS: VHS domain; Int 67.4 80 0.0017 29.5 11.1 76 217-292 40-121 (140)
245 KOG1525 Sister chromatid cohes 66.6 3.7E+02 0.0079 34.5 19.3 74 215-292 255-329 (1266)
246 PF08161 NUC173: NUC173 domain 66.5 16 0.00035 36.5 6.6 74 181-254 3-77 (198)
247 smart00185 ARM Armadillo/beta- 66.3 8.6 0.00019 27.2 3.5 28 220-247 13-40 (41)
248 PF04003 Utp12: Dip2/Utp12 Fam 65.9 16 0.00035 32.2 5.9 86 40-125 15-103 (110)
249 KOG1058 Vesicle coat complex C 65.0 2.2E+02 0.0048 34.4 15.9 171 20-193 281-452 (948)
250 PF11701 UNC45-central: Myosin 63.9 15 0.00033 35.1 5.6 65 98-163 86-156 (157)
251 PF12783 Sec7_N: Guanine nucle 63.5 44 0.00095 31.9 8.8 93 35-127 38-146 (168)
252 KOG4199 Uncharacterized conser 63.3 2.4E+02 0.0053 31.2 15.3 178 24-203 243-440 (461)
253 KOG2149 Uncharacterized conser 63.2 1.4E+02 0.003 33.3 13.2 123 137-260 59-182 (393)
254 PF11919 DUF3437: Domain of un 63.1 8.6 0.00019 33.9 3.5 57 234-291 4-60 (90)
255 PF00790 VHS: VHS domain; Int 63.0 1.3E+02 0.0029 28.0 12.7 125 19-145 6-136 (140)
256 PF12333 Ipi1_N: Rix1 complex 62.9 14 0.00031 32.9 5.0 56 55-110 9-65 (102)
257 PF08161 NUC173: NUC173 domain 62.9 1.7E+02 0.0037 29.3 13.6 56 155-210 18-73 (198)
258 PF11698 V-ATPase_H_C: V-ATPas 61.5 15 0.00032 34.2 4.8 70 16-85 41-114 (119)
259 PF07571 DUF1546: Protein of u 61.2 10 0.00022 33.3 3.6 46 230-275 17-62 (92)
260 PF14664 RICTOR_N: Rapamycin-i 60.7 2.6E+02 0.0055 30.8 15.0 72 70-146 81-157 (371)
261 KOG4524 Uncharacterized conser 59.9 29 0.00062 42.3 8.0 94 96-190 801-901 (1014)
262 smart00543 MIF4G Middle domain 58.8 1.7E+02 0.0036 27.8 13.5 65 22-89 3-67 (200)
263 PF08767 CRM1_C: CRM1 C termin 58.6 1.5E+02 0.0032 31.8 12.5 93 38-131 95-198 (319)
264 PF14631 FancD2: Fanconi anaem 57.8 3.8E+02 0.0082 34.9 17.6 216 52-281 430-657 (1426)
265 KOG1851 Uncharacterized conser 56.5 3.5E+02 0.0077 35.2 16.4 152 35-188 1503-1660(1710)
266 KOG0946 ER-Golgi vesicle-tethe 55.0 3E+02 0.0065 33.5 14.8 192 98-291 22-244 (970)
267 KOG1517 Guanine nucleotide bin 55.0 2.7E+02 0.0059 34.9 14.7 98 70-168 570-673 (1387)
268 COG5098 Chromosome condensatio 54.5 4.7E+02 0.01 31.7 17.7 109 175-284 296-410 (1128)
269 cd03561 VHS VHS domain family; 54.3 76 0.0017 29.4 8.4 76 218-293 36-116 (133)
270 PRK14707 hypothetical protein; 54.0 4.1E+02 0.0089 36.0 16.6 136 23-167 546-698 (2710)
271 PF11935 DUF3453: Domain of un 54.0 1.8E+02 0.004 29.7 11.9 146 68-229 4-163 (239)
272 smart00288 VHS Domain present 53.8 1.9E+02 0.0041 26.9 11.0 107 37-145 19-129 (133)
273 PF12765 Cohesin_HEAT: HEAT re 53.2 25 0.00055 26.5 4.1 26 218-243 17-42 (42)
274 PF08713 DNA_alkylation: DNA a 53.0 71 0.0015 31.1 8.4 78 97-178 119-196 (213)
275 KOG1525 Sister chromatid cohes 53.0 2.4E+02 0.0053 36.0 14.6 202 35-248 201-405 (1266)
276 PF08713 DNA_alkylation: DNA a 52.4 13 0.00029 36.2 3.2 65 59-129 122-186 (213)
277 PF03130 HEAT_PBS: PBS lyase H 52.3 12 0.00026 25.4 2.0 25 114-145 1-25 (27)
278 PF12054 DUF3535: Domain of un 51.3 4E+02 0.0087 30.0 16.3 96 114-210 103-211 (441)
279 PF01417 ENTH: ENTH domain; I 51.1 1.8E+02 0.004 26.4 10.3 99 184-288 9-120 (125)
280 PF12397 U3snoRNP10: U3 small 51.1 80 0.0017 28.4 7.9 74 174-250 2-76 (121)
281 PRK14707 hypothetical protein; 49.9 4.7E+02 0.01 35.5 16.2 176 21-205 712-906 (2710)
282 KOG2081 Nuclear transport regu 47.5 5.2E+02 0.011 30.2 22.4 179 90-272 145-353 (559)
283 cd03568 VHS_STAM VHS domain fa 47.3 2.4E+02 0.0052 26.8 10.7 107 37-145 19-128 (144)
284 KOG3678 SARM protein (with ste 45.7 3E+02 0.0064 31.7 12.4 166 69-250 276-454 (832)
285 cd06561 AlkD_like A new struct 45.1 57 0.0012 31.4 6.3 108 55-178 73-182 (197)
286 cd03569 VHS_Hrs_Vps27p VHS dom 43.3 2.3E+02 0.005 26.8 9.9 88 138-226 43-134 (142)
287 PF12612 TFCD_C: Tubulin foldi 42.7 3.4E+02 0.0073 26.6 12.8 156 95-273 4-165 (193)
288 PF10350 DUF2428: Putative dea 42.0 4.1E+02 0.0089 27.4 12.8 127 138-264 98-244 (255)
289 PF09324 DUF1981: Domain of un 41.8 1E+02 0.0023 26.6 6.7 60 55-117 19-78 (86)
290 COG5314 Conjugal transfer/entr 40.6 66 0.0014 33.3 6.0 65 475-540 41-112 (252)
291 KOG2973 Uncharacterized conser 39.4 68 0.0015 34.7 6.1 62 64-128 10-72 (353)
292 PF11864 DUF3384: Domain of un 38.9 6.1E+02 0.013 28.5 22.2 233 38-280 9-277 (464)
293 PF02465 FliD_N: Flagellar hoo 38.6 86 0.0019 27.3 5.8 54 478-531 4-57 (99)
294 KOG2842 Interferon-related pro 38.5 6.1E+02 0.013 28.4 15.2 214 16-229 55-299 (427)
295 cd03572 ENTH_epsin_related ENT 37.9 3.4E+02 0.0074 25.3 10.5 72 217-288 36-118 (122)
296 KOG3961 Uncharacterized conser 37.8 98 0.0021 32.0 6.7 67 162-228 139-208 (262)
297 PF05536 Neurochondrin: Neuroc 37.8 3.9E+02 0.0086 30.9 12.5 174 114-293 73-265 (543)
298 PF10805 DUF2730: Protein of u 37.7 56 0.0012 29.5 4.6 48 482-529 46-98 (106)
299 KOG2011 Sister chromatid cohes 37.1 5.1E+02 0.011 32.5 13.6 165 74-246 262-433 (1048)
300 COG5412 Phage-related protein 36.5 7.9E+02 0.017 29.1 16.5 47 71-117 214-263 (637)
301 smart00288 VHS Domain present 35.8 2.6E+02 0.0055 26.0 8.8 76 218-293 36-115 (133)
302 KOG1988 Uncharacterized conser 35.3 9.5E+02 0.021 29.7 17.7 211 58-287 64-279 (970)
303 PF13764 E3_UbLigase_R4: E3 ub 35.0 8.4E+02 0.018 29.9 14.9 75 173-251 224-303 (802)
304 PF14664 RICTOR_N: Rapamycin-i 34.5 5.3E+02 0.011 28.4 12.3 178 24-207 72-269 (371)
305 PF14868 DUF4487: Domain of un 34.5 6.8E+02 0.015 29.3 13.6 73 175-250 476-554 (559)
306 PF05918 API5: Apoptosis inhib 34.1 1.4E+02 0.0031 34.7 8.1 122 153-285 19-158 (556)
307 KOG4500 Rho/Rac GTPase guanine 33.7 3.2E+02 0.0069 31.2 10.3 109 97-207 314-431 (604)
308 PF04582 Reo_sigmaC: Reovirus 33.3 14 0.00031 39.8 0.0 62 475-540 25-86 (326)
309 PF14668 RICTOR_V: Rapamycin-i 33.1 90 0.0019 26.5 4.8 54 73-128 3-59 (73)
310 KOG3613 Dopey and related pred 32.6 3.6E+02 0.0078 35.4 11.6 166 90-258 1389-1570(1749)
311 cd00197 VHS_ENTH_ANTH VHS, ENT 32.0 3.6E+02 0.0079 23.9 10.8 73 52-125 32-113 (115)
312 PF12243 CTK3: CTD kinase subu 31.3 4.1E+02 0.009 25.3 9.5 102 137-248 9-119 (139)
313 KOG1988 Uncharacterized conser 31.3 5.8E+02 0.013 31.4 12.4 97 24-127 62-167 (970)
314 KOG1925 Rac1 GTPase effector F 31.0 5.5E+02 0.012 29.8 11.6 63 178-250 514-576 (817)
315 COG5110 RPN1 26S proteasome re 31.0 8.8E+02 0.019 28.7 13.3 77 23-100 414-494 (881)
316 smart00567 EZ_HEAT E-Z type HE 30.7 60 0.0013 22.0 2.8 30 71-110 1-30 (30)
317 PF11707 Npa1: Ribosome 60S bi 30.0 7.1E+02 0.015 26.6 18.5 232 20-266 26-317 (330)
318 cd03572 ENTH_epsin_related ENT 29.9 4.3E+02 0.0094 24.6 9.2 90 35-126 17-118 (122)
319 PF10046 BLOC1_2: Biogenesis o 29.9 1.5E+02 0.0032 26.4 5.9 44 478-529 42-85 (99)
320 cd03567 VHS_GGA VHS domain fam 29.7 4.9E+02 0.011 24.6 10.2 70 139-209 41-118 (139)
321 cd03561 VHS VHS domain family; 29.7 4.5E+02 0.0098 24.2 11.8 94 36-131 18-116 (133)
322 PF14225 MOR2-PAG1_C: Cell mor 28.2 7.1E+02 0.015 26.1 13.2 121 76-209 134-256 (262)
323 PF08146 BP28CT: BP28CT (NUC21 27.6 4.4E+02 0.0096 25.2 9.1 76 36-111 38-121 (153)
324 PF08146 BP28CT: BP28CT (NUC21 27.1 3.9E+02 0.0085 25.5 8.7 51 200-250 89-149 (153)
325 PF04118 Dopey_N: Dopey, N-ter 27.1 5.7E+02 0.012 27.5 10.8 129 161-293 35-171 (307)
326 PHA02836 putative transmembran 26.7 73 0.0016 30.3 3.5 65 44-110 74-141 (153)
327 KOG0889 Histone acetyltransfer 26.5 4.4E+02 0.0096 37.1 11.4 162 99-260 985-1171(3550)
328 PF12333 Ipi1_N: Rix1 complex 26.4 84 0.0018 28.0 3.7 40 90-129 3-42 (102)
329 KOG0904 Phosphatidylinositol 3 26.4 4.3E+02 0.0093 32.6 10.3 74 69-154 588-661 (1076)
330 PF09268 Clathrin-link: Clathr 26.2 32 0.0007 23.4 0.8 21 98-118 3-23 (24)
331 PF12531 DUF3731: DNA-K relate 26.1 1.2E+02 0.0025 31.8 5.2 69 73-147 97-171 (249)
332 cd03565 VHS_Tom1 VHS domain fa 25.8 5.7E+02 0.012 24.1 11.1 108 36-145 19-133 (141)
333 KOG0413 Uncharacterized conser 25.7 1.5E+03 0.032 28.9 17.1 178 55-252 470-649 (1529)
334 PRK09169 hypothetical protein; 25.6 1.9E+03 0.042 30.2 21.4 244 17-291 667-936 (2316)
335 PF13925 Katanin_con80: con80 25.4 6.2E+02 0.013 24.4 10.2 44 214-257 64-107 (164)
336 PF12531 DUF3731: DNA-K relate 25.1 8.2E+02 0.018 25.7 12.4 188 87-280 19-227 (249)
337 KOG2153 Protein involved in th 24.6 6.1E+02 0.013 30.2 10.9 189 43-271 194-393 (704)
338 PF04513 Baculo_PEP_C: Baculov 24.4 1.7E+02 0.0038 28.0 5.6 53 478-530 20-76 (140)
339 cd00872 PI3Ka_I Phosphoinositi 24.2 1.8E+02 0.0038 28.7 5.8 60 40-104 56-115 (171)
340 COG3352 FlaC Putative archaeal 24.2 52 0.0011 31.9 2.1 64 472-535 38-104 (157)
341 PF06371 Drf_GBD: Diaphanous G 24.1 1.5E+02 0.0032 28.2 5.3 29 219-247 158-186 (187)
342 PF08767 CRM1_C: CRM1 C termin 23.9 9.1E+02 0.02 25.8 19.3 114 137-250 68-196 (319)
343 PF01851 PC_rep: Proteasome/cy 23.6 1.1E+02 0.0023 22.1 3.2 34 76-115 1-34 (35)
344 PF14838 INTS5_C: Integrator c 23.5 1.4E+03 0.029 27.7 14.8 51 77-127 5-58 (696)
345 KOG0889 Histone acetyltransfer 23.1 1.3E+03 0.028 33.1 14.5 170 32-202 997-1196(3550)
346 cd03568 VHS_STAM VHS domain fa 23.0 6.5E+02 0.014 23.8 11.1 75 218-292 36-113 (144)
347 KOG2141 Protein involved in hi 23.0 1.3E+03 0.028 28.1 13.1 32 16-47 316-347 (822)
348 PF06476 DUF1090: Protein of u 22.1 57 0.0012 30.1 1.9 15 516-530 42-56 (115)
349 PF08625 Utp13: Utp13 specific 21.8 2.2E+02 0.0049 27.0 5.9 65 22-88 28-94 (141)
350 PF00517 GP41: Retroviral enve 21.7 2E+02 0.0043 29.0 5.7 59 488-554 17-83 (204)
351 PF07539 DRIM: Down-regulated 21.5 3.5E+02 0.0076 25.7 7.1 78 138-228 18-97 (141)
352 PF04388 Hamartin: Hamartin pr 21.2 1.4E+03 0.031 27.1 14.2 86 174-264 66-156 (668)
353 PF14868 DUF4487: Domain of un 21.0 3.5E+02 0.0077 31.5 8.3 92 39-130 461-555 (559)
354 PF10441 Urb2: Urb2/Npa2 famil 21.0 8.5E+02 0.018 24.4 11.1 35 112-146 52-92 (223)
355 COG5101 CRM1 Importin beta-rel 20.6 1.1E+03 0.025 28.3 11.9 148 15-166 86-261 (1053)
356 PF08569 Mo25: Mo25-like; Int 20.5 1.1E+03 0.024 25.6 20.6 192 98-291 76-285 (335)
357 cd05128 RasGAP_GAP1_like The G 20.3 1.1E+03 0.024 25.4 11.5 73 74-147 35-109 (315)
358 smart00323 RasGAP GTPase-activ 20.2 1.1E+03 0.023 25.3 11.8 58 90-147 69-128 (344)
359 cd03562 CID CID (CTD-Interacti 20.0 4.7E+02 0.01 23.1 7.3 98 25-123 6-104 (114)
No 1
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-33 Score=308.36 Aligned_cols=236 Identities=21% Similarity=0.209 Sum_probs=214.8
Q ss_pred hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhH
Q 046417 35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSV 114 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~V 114 (595)
-+||.++.||.||..++.+.++.+|+.|.+...++.|.+|+++|++||++||||.+++.||||.++|+++..|.|-.|.|
T Consensus 371 LRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplV 450 (885)
T KOG2023|consen 371 LRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLV 450 (885)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccce
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh---cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc
Q 046417 115 RSACVAATTAMSLNITKPSFSVLSKPLIELILV---EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG 191 (595)
Q Consensus 115 R~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~---d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~ 191 (595)
|.++||||++++.|+..++-..||+|+++.|+. |.||.||++||+|+|.+.|.|.+.++|||..|+..|.++| ..
T Consensus 451 RsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af--~k 528 (885)
T KOG2023|consen 451 RSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAF--GK 528 (885)
T ss_pred eeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH--HH
Confidence 999999999999999876644589998888864 8999999999999999999999999999999999999999 77
Q ss_pred hhHHHHHH--HHHHHHHHhhcc--cCcCcHHhHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 046417 192 FKAKAAVL--GVIGSVVRVGGA--RSKGVLDWLVPCLVEFLC--CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAAL 265 (595)
Q Consensus 192 ~kaK~alL--sAIgSlA~a~g~--~~~~yl~~lmp~L~e~L~--~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~L 265 (595)
|+.|+.+| +|||++|...|. ..+.|++.+||+|++.|. +++-..-++.+|||++||.++|.+|.||.++ ++
T Consensus 529 YQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~---Vy 605 (885)
T KOG2023|consen 529 YQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQP---VY 605 (885)
T ss_pred HhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHH---HH
Confidence 88776554 999999995543 357899999999999996 3443667889999999999999999999887 88
Q ss_pred HhccCCchHHHHHH
Q 046417 266 ETRRFDKVKIVRET 279 (595)
Q Consensus 266 e~crfDKVK~VRda 279 (595)
++| +.+++..
T Consensus 606 ~Rc----~~il~~t 615 (885)
T KOG2023|consen 606 QRC----FRILQKT 615 (885)
T ss_pred HHH----HHHHHHH
Confidence 888 7777776
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.4e-29 Score=287.60 Aligned_cols=275 Identities=20% Similarity=0.182 Sum_probs=232.5
Q ss_pred hHHHHHHHHHhhhcCCC------------C---hHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHH
Q 046417 17 NDLKQRVITCLNKLADR------------D---TLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNL 80 (595)
Q Consensus 17 ~~lk~rvl~~L~KL~Dr------------D---T~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~l 80 (595)
.+|--.++...+.+.|+ | ++++|.+.||.+|.+|+++. +|++++++.....+++|..|++++++
T Consensus 292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~A 371 (1075)
T KOG2171|consen 292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLA 371 (1075)
T ss_pred ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 44556666666666544 2 99999999999999999887 99999999999999999999999999
Q ss_pred HHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch-----hccHH-HHHHHhhcCChhHH
Q 046417 81 LTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS-----VLSKP-LIELILVEQDVNSQ 154 (595)
Q Consensus 81 LG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-----~~l~P-Li~aLl~d~nk~VQ 154 (595)
|++++|||++.|.++|++||+.|++.|+||+|.||.|||+++|+|+..+. +++ ..+.| |+..|-..++..||
T Consensus 372 ls~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~--p~iqk~~~e~l~~aL~~~ld~~~~~rV~ 449 (1075)
T KOG2171|consen 372 LSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ--PEIQKKHHERLPPALIALLDSTQNVRVQ 449 (1075)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc--HHHHHHHHHhccHHHHHHhcccCchHHH
Confidence 99999999999999999999999999999999999999999999999884 332 25555 44444335788999
Q ss_pred HHHHHHHHHHHhcCC-CchHHHHHHHHH-HHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccC--
Q 046417 155 VGGAMCLAAAIDAAP-NPEVEQLRKLLP-RLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCC-- 230 (595)
Q Consensus 155 ~~AA~cLaaviE~a~-d~~~~~L~~Ll~-rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~-- 230 (595)
..||.||..+.|.++ +.+.|||+.||. +|..++.+....+|.+++.+|||+|.+++..|.+|++.+||+|..+|..
T Consensus 450 ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 450 AHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC
Confidence 999999999999864 555799999999 5555556668889999999999999999999999999999999999963
Q ss_pred --CCHHHHHHHHHHHHHHHHHhH-HhHHHHHHHHHHHHHhccCCch---HHHHHHHHHHHHHhHhcCCC
Q 046417 231 --DDWATRKAAAEVLGKVAVFDK-DLATEYKRSCLAALETRRFDKV---KIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 231 --dDW~~RkaAaEaLgsIA~avg-e~f~py~~~~I~~Le~crfDKV---K~VRda~~~aL~~~K~i~~~ 293 (595)
+.-.+|.-.+||++.||.++| +.|.|++.++|..+-....+-+ .+.|+-+..+.-.+-.|.|.
T Consensus 530 ~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~ 598 (1075)
T KOG2171|consen 530 DKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGD 598 (1075)
T ss_pred chhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhch
Confidence 457889999999999999999 8999999999999655433322 56777777666666666655
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=8.2e-18 Score=185.16 Aligned_cols=242 Identities=24% Similarity=0.257 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHHhCCcCc---HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCCh
Q 046417 36 LPVATAELESIARTLTQDS---FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDS 112 (595)
Q Consensus 36 ~r~A~~~LD~lA~~L~~~~---lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds 112 (595)
+.-|+..+..+.-.-++.. |..||..|.....+.++.+||..+++|..+-|.++|.+.|||+.||.|++.+.+|+|.
T Consensus 191 Rs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE 270 (885)
T KOG2023|consen 191 RSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDE 270 (885)
T ss_pred HHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcch
Confidence 4446666666554444322 7889999988888888999999999999999999999999999999999999999999
Q ss_pred hH-HHHHHHHHHHhhhh-hcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh---
Q 046417 113 SV-RSACVAATTAMSLN-ITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAV--- 187 (595)
Q Consensus 113 ~V-R~Ac~~aLg~LA~~-l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL--- 187 (595)
.| -+||-++++ +|+. +++..+..|++-|+..|+ ..+++....-.+ |...-| ++.+...-++|-||++|--
T Consensus 271 ~VALEACEFwla-~aeqpi~~~~L~p~l~kliPvLl-~~M~Ysd~D~~L-L~~~ee--D~~vpDreeDIkPRfhksk~~~ 345 (885)
T KOG2023|consen 271 NVALEACEFWLA-LAEQPICKEVLQPYLDKLIPVLL-SGMVYSDDDIIL-LKNNEE--DESVPDREEDIKPRFHKSKEHG 345 (885)
T ss_pred hHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHHHHH-ccCccccccHHH-hcCccc--cccCCchhhhccchhhhchhcc
Confidence 98 788888854 5543 333222348888888886 455554444443 331111 1222235667889998854
Q ss_pred ----------------------ccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 046417 188 ----------------------RIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGK 245 (595)
Q Consensus 188 ----------------------~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgs 245 (595)
+|+-++|.+|+|+.++++. ....++.++|.|++.|.+++|.+|.+++.+||+
T Consensus 346 ~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf------~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGA 419 (885)
T KOG2023|consen 346 NGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVF------GDELLPILLPLLKEHLSSEEWKVREAGVLALGA 419 (885)
T ss_pred CccccccccccccccccccccccccHhhccHHHHHHHHHhh------HHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHH
Confidence 2677889999999999888 457789999999999999999999999999999
Q ss_pred HHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417 246 VAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWK 288 (595)
Q Consensus 246 IA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K 288 (595)
||..++++|.||.+..+++|-+|-+||.++||..+.=.|..+-
T Consensus 420 IAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys 462 (885)
T KOG2023|consen 420 IAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYS 462 (885)
T ss_pred HHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhh
Confidence 9999999999999999999999999999999998877665543
No 4
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=9e-12 Score=139.89 Aligned_cols=253 Identities=13% Similarity=0.131 Sum_probs=198.6
Q ss_pred hHHHHHHHHHhhhcCC---CC---hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-
Q 046417 17 NDLKQRVITCLNKLAD---RD---TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG- 89 (595)
Q Consensus 17 ~~lk~rvl~~L~KL~D---rD---T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g- 89 (595)
+.+---++..|+|=++ +| +++.|-..|..+|+.-..+.+++.++.|.+.+++++|..|++++.+||-+-+|-.
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~ 397 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP 397 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence 4566667888888542 22 8999999999999999888899999999999999999999999999999999875
Q ss_pred ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC---------------------c---------------
Q 046417 90 DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP---------------------S--------------- 133 (595)
Q Consensus 90 d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~---------------------~--------------- 133 (595)
+.+.|..+..+|.|++...||.-.||+.+.|++|++++++... |
T Consensus 398 ~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 398 DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAE 477 (859)
T ss_pred hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999887531 0
Q ss_pred -------------ch-hccHHHHHHHhh-----c-CChhHHHHHHHHHHHHHhcCCCchHH-------------------
Q 046417 134 -------------FS-VLSKPLIELILV-----E-QDVNSQVGGAMCLAAAIDAAPNPEVE------------------- 174 (595)
Q Consensus 134 -------------~~-~~l~PLi~aLl~-----d-~nk~VQ~~AA~cLaaviE~a~d~~~~------------------- 174 (595)
.. .|+.+++..|+. + +.-+.-.+|..||-.+|.+.++..-+
T Consensus 478 a~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~ 557 (859)
T KOG1241|consen 478 AAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISS 557 (859)
T ss_pred HHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 155666666653 1 23345566666777777665443221
Q ss_pred -----------------------------------HHHHHHHHHHHhhccC-chhHHHHHHHHHHHHHHhhcccCcCcHH
Q 046417 175 -----------------------------------QLRKLLPRLGKAVRIE-GFKAKAAVLGVIGSVVRVGGARSKGVLD 218 (595)
Q Consensus 175 -----------------------------------~L~~Ll~rL~klL~~~-~~kaK~alLsAIgSlA~a~g~~~~~yl~ 218 (595)
+-+.||.-|+++|+++ +--+..-++-+|++++...|..|..|++
T Consensus 558 ~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~ 637 (859)
T KOG1241|consen 558 QILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMP 637 (859)
T ss_pred HhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHH
Confidence 2224555555666552 3335566677889999888888999999
Q ss_pred hHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhcc
Q 046417 219 WLVPCLVEFLC-CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRR 269 (595)
Q Consensus 219 ~lmp~L~e~L~-~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~cr 269 (595)
.+.|.|..-|. -.|.++-.+|.-..|-|+.++++.|.||...+|..|-.|-
T Consensus 638 ~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~L 689 (859)
T KOG1241|consen 638 AFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCL 689 (859)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHc
Confidence 99999999994 5789999999999999999999999999988888876663
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.5e-11 Score=141.48 Aligned_cols=273 Identities=19% Similarity=0.225 Sum_probs=199.1
Q ss_pred CCChhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc
Q 046417 13 PPSTNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL 92 (595)
Q Consensus 13 ~~~~~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I 92 (595)
.+.-+.+|..+|.++-+-.-.--++--...+-.+|+++=++.-|-+|+.|.+...++++..|+.+++.|..+.+..|...
T Consensus 74 ~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~ 153 (1075)
T KOG2171|consen 74 AEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL 153 (1075)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence 34457888888888888433223344445556678876666888899999998899999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc-CCcch----hccHHHHHHHhh---cCChhHHHHHHHHHHHH
Q 046417 93 SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT-KPSFS----VLSKPLIELILV---EQDVNSQVGGAMCLAAA 164 (595)
Q Consensus 93 ~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~-~~~~~----~~l~PLi~aLl~---d~nk~VQ~~AA~cLaav 164 (595)
.||+..+++.+.+.+.|+...||-+++.|++.++.++. +.... .+++-++..|-. ++|. ..|+.||..+
T Consensus 154 ~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~---~~a~~~l~~l 230 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDD---DAAKSALEAL 230 (1075)
T ss_pred chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccch---HHHHHHHHHH
Confidence 99999999999999999998899999999999999984 22222 234335555521 2222 2355555555
Q ss_pred Hhc---CCCchHHHHHHHHHHHHHhhccCch--hHHHHHHHHHHHHHHhh------------------------------
Q 046417 165 IDA---APNPEVEQLRKLLPRLGKAVRIEGF--KAKAAVLGVIGSVVRVG------------------------------ 209 (595)
Q Consensus 165 iE~---a~d~~~~~L~~Ll~rL~klL~~~~~--kaK~alLsAIgSlA~a~------------------------------ 209 (595)
+|- .+..+.+++..++.-.++..++... .+|-.+|..|-+++..+
T Consensus 231 ~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~e 310 (1075)
T KOG2171|consen 231 IELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDE 310 (1075)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchh
Confidence 554 4444456666665555555544422 24555555555554431
Q ss_pred ----------------------------cccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Q 046417 210 ----------------------------GARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSC 261 (595)
Q Consensus 210 ----------------------------g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~ 261 (595)
+..+...++.+++.+..++.+.+|.-|+||+-+|+.++..+++.+....+.+
T Consensus 311 w~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~I 390 (1075)
T KOG2171|consen 311 WSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKI 390 (1075)
T ss_pred hccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1112344566677777888899999999999999999999999888888888
Q ss_pred HHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417 262 LAALETRRFDKVKIVRETMNRSLEMWK 288 (595)
Q Consensus 262 I~~Le~crfDKVK~VRda~~~aL~~~K 288 (595)
+.+.-+.--|-=+.||-++..||..+-
T Consensus 391 l~~Vl~~l~DphprVr~AA~naigQ~s 417 (1075)
T KOG2171|consen 391 LPIVLNGLNDPHPRVRYAALNAIGQMS 417 (1075)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhh
Confidence 888777777999999999988887654
No 6
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.22 E-value=1e-09 Score=120.45 Aligned_cols=252 Identities=15% Similarity=0.143 Sum_probs=195.2
Q ss_pred HHHHHHHHHhhhcC----CCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-c
Q 046417 18 DLKQRVITCLNKLA----DRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-D 90 (595)
Q Consensus 18 ~lk~rvl~~L~KL~----DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d 90 (595)
+.--.+|..|.|-+ |+| +...|...|..+|+.-....+.+.+..+.+.+.+++|..|++++++||-+-+|-. +
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~ 400 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCED 400 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHH
Confidence 44455666777743 222 8888999999999988777799999999999999999999999999999998865 6
Q ss_pred cchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC---C------------------c----------------
Q 046417 91 SLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK---P------------------S---------------- 133 (595)
Q Consensus 91 ~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~---~------------------~---------------- 133 (595)
-+.++.|+.+|.|.....|+---|.+-++|++|++|.++.. + |
T Consensus 401 ~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 401 CLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDH 480 (858)
T ss_pred HHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence 66889999999999999988888999999999999988753 0 0
Q ss_pred ------ch-h----ccHHHHHHHhh-----cCChhHHHHHHHHHHHHHhcCCCchHHHHH--------------------
Q 046417 134 ------FS-V----LSKPLIELILV-----EQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-------------------- 177 (595)
Q Consensus 134 ------~~-~----~l~PLi~aLl~-----d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-------------------- 177 (595)
+. + |..-++.+|++ .++-+...++..+|..+|+-+++.+.+++-
T Consensus 481 ~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~ 560 (858)
T COG5215 481 IAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQI 560 (858)
T ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 00 1 34445555543 455667788888889888877665433221
Q ss_pred ------------------------------------HHHHHHHHhhccC-chhHHHHHHHHHHHHHHhhcccCcCcHHhH
Q 046417 178 ------------------------------------KLLPRLGKAVRIE-GFKAKAAVLGVIGSVVRVGGARSKGVLDWL 220 (595)
Q Consensus 178 ------------------------------------~Ll~rL~klL~~~-~~kaK~alLsAIgSlA~a~g~~~~~yl~~l 220 (595)
.||.-|++.|++. ..-+-.-++-+|+.++..-++.|..|++.+
T Consensus 561 l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~f 640 (858)
T COG5215 561 LATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKF 640 (858)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2444444455443 223445567788888888788899999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhcc
Q 046417 221 VPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRR 269 (595)
Q Consensus 221 mp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~cr 269 (595)
+|.|...|...|..+-..|.-.+|.||..+|.-|.+|....+..|-.|-
T Consensus 641 iPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~l 689 (858)
T COG5215 641 IPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCL 689 (858)
T ss_pred hHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988777776664
No 7
>PRK09687 putative lyase; Provisional
Probab=99.13 E-value=1.4e-09 Score=112.88 Aligned_cols=199 Identities=15% Similarity=0.059 Sum_probs=128.5
Q ss_pred hHHHHHHHHHhhhc-CCCCh--HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccch
Q 046417 17 NDLKQRVITCLNKL-ADRDT--LPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLS 93 (595)
Q Consensus 17 ~~lk~rvl~~L~KL-~DrDT--~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~ 93 (595)
+..+..-+..|.++ .|.|+ +..|+..|..+. +++.++.+...+. ++++.+|++++.+||.+.. .+..
T Consensus 18 ~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~---~~~~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~--~~~~- 87 (280)
T PRK09687 18 SQCKKLNDDELFRLLDDHNSLKRISSIRVLQLRG---GQDVFRLAIELCS----SKNPIERDIGADILSQLGM--AKRC- 87 (280)
T ss_pred HHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcC---cchHHHHHHHHHh----CCCHHHHHHHHHHHHhcCC--Cccc-
Confidence 34444444444444 56563 444555554332 2333555555433 3568899999999888743 1111
Q ss_pred hhHHHHHHHHHhh-ccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch
Q 046417 94 PHLSKMISTVSCR-LRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE 172 (595)
Q Consensus 94 PhLpkIL~~Ivrr-LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~ 172 (595)
..+.++.+... ++|+++.||.+++.+||.+...... +...++..|..++ .+.+..|+.+|+.+|..+- +
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~-~~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~----~-- 157 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL-YSPKIVEQSQITA-FDKSTNVRFAVAFALSVIN----D-- 157 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc-cchHHHHHHHHHh-hCCCHHHHHHHHHHHhccC----C--
Confidence 45777877766 7889999999999888887643321 1112445555555 5678888888888885332 1
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 046417 173 VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVA 247 (595)
Q Consensus 173 ~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA 247 (595)
+..++-|..+|++++..++..++-++|.+- .. -+.+++.|...|.|.+|.+|+.|+.+||.+.
T Consensus 158 ----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~----~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 158 ----EAAIPLLINLLKDPNGDVRNWAAFALNSNK----YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred ----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC----CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 245677777888888888888877777651 11 2467788888888889999999999988864
No 8
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.03 E-value=1e-08 Score=121.66 Aligned_cols=214 Identities=20% Similarity=0.159 Sum_probs=126.2
Q ss_pred cCCCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc
Q 046417 30 LADRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL 107 (595)
Q Consensus 30 L~DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL 107 (595)
|.|.| .++.|+..|-.+. +++.++.++..|. ++++.+|.+++.+|+.+++.... .+.+...|
T Consensus 630 L~D~d~~VR~~Av~~L~~~~---~~~~~~~L~~aL~----D~d~~VR~~Aa~aL~~l~~~~~~---------~~~L~~~L 693 (897)
T PRK13800 630 LADPDPGVRRTAVAVLTETT---PPGFGPALVAALG----DGAAAVRRAAAEGLRELVEVLPP---------APALRDHL 693 (897)
T ss_pred hcCCCHHHHHHHHHHHhhhc---chhHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhccCc---------hHHHHHHh
Confidence 44555 6777777765543 4555666665553 35688999998888887654321 12334445
Q ss_pred cCCChhHHHHHHHHHHHhhhhh--------cCC-cch-----------hccHHHHHHHhhcCChhHHHHHHHHHHHHHhc
Q 046417 108 RDPDSSVRSACVAATTAMSLNI--------TKP-SFS-----------VLSKPLIELILVEQDVNSQVGGAMCLAAAIDA 167 (595)
Q Consensus 108 kD~ds~VR~Ac~~aLg~LA~~l--------~~~-~~~-----------~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~ 167 (595)
.|+++.||.+++.+|+.+...- .++ +.. .-...|..+| .|.+..|+..++.+|..+...
T Consensus 694 ~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l-~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 694 GSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAA-TDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred cCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHh-cCCCHHHHHHHHHHHHHhccc
Confidence 5555566666665555543100 000 000 0011222333 455555555555555544332
Q ss_pred CCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 046417 168 APNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVA 247 (595)
Q Consensus 168 a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA 247 (595)
.. ...+.|.++++++...+|.+++.+++.+ +.. +.+.+.|...|.+++|.+|.+|+++|+.+.
T Consensus 773 ~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~---g~~------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 773 GA--------PAGDAVRALTGDPDPLVRAAALAALAEL---GCP------PDDVAAATAALRASAWQVRQGAARALAGAA 835 (897)
T ss_pred cc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhc---CCc------chhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 11 1145667888888888888887777643 111 233466888899999999999999998764
Q ss_pred HHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417 248 VFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 248 ~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~ 287 (595)
.. +. .+.++..|. |+...||..+.++|..|
T Consensus 836 ~~--~a----~~~L~~~L~----D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 836 AD--VA----VPALVEALT----DPHLDVRKAAVLALTRW 865 (897)
T ss_pred cc--ch----HHHHHHHhc----CCCHHHHHHHHHHHhcc
Confidence 21 11 133444555 99999999999999887
No 9
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=1.2e-08 Score=113.52 Aligned_cols=242 Identities=17% Similarity=0.154 Sum_probs=185.5
Q ss_pred HHHHHHHHHhhhcCCCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh
Q 046417 18 DLKQRVITCLNKLADRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH 95 (595)
Q Consensus 18 ~lk~rvl~~L~KL~DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph 95 (595)
.+..-+-.+|++.+|.+ -++.|....+.+...+++..+.-||+-+.......+|+.+.+++-++|.+++..++.+.-.
T Consensus 213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~ 292 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC 292 (569)
T ss_pred hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH
Confidence 56677788899998887 6778889999999999987777666666555555599999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhc--CCCch
Q 046417 96 LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDA--APNPE 172 (595)
Q Consensus 96 LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~--a~d~~ 172 (595)
+|.|+|.+...|.|..+.||.|+-.+|-++++.+-. +.+ .+++-|+++| ++...++.. |+..+... .....
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN-~dI~~~ip~Lld~l-~dp~~~~~e----~~~~L~~ttFV~~V~ 366 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN-PDIQKIIPTLLDAL-ADPSCYTPE----CLDSLGATTFVAEVD 366 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHh-cCcccchHH----HHHhhcceeeeeeec
Confidence 999999999999999999999999999999987743 334 4888899999 666644442 23433332 23333
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh--cccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 046417 173 VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG--GARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD 250 (595)
Q Consensus 173 ~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~--g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av 250 (595)
.+-|.-|+|-|.+-|+..++..|-..+-.++-++.-- ...-.+|++.++|-|...+-+.+=.+|..|+-+|+.+-..+
T Consensus 367 ~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 367 APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERL 446 (569)
T ss_pred chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 4677788888888887776666655555566555422 22346999999999999998888899999999999999998
Q ss_pred HH-hHHHHHHHHHHHH
Q 046417 251 KD-LATEYKRSCLAAL 265 (595)
Q Consensus 251 ge-~f~py~~~~I~~L 265 (595)
|+ .|..-.+.....+
T Consensus 447 g~~~f~d~~p~l~e~~ 462 (569)
T KOG1242|consen 447 GEVSFDDLIPELSETL 462 (569)
T ss_pred HhhcccccccHHHHhh
Confidence 84 5533334433333
No 10
>PRK09687 putative lyase; Provisional
Probab=99.00 E-value=2.5e-08 Score=103.66 Aligned_cols=169 Identities=12% Similarity=0.047 Sum_probs=83.3
Q ss_pred HhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhh
Q 046417 48 RTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSL 127 (595)
Q Consensus 48 ~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~ 127 (595)
..+..-.+..++..|.+ .+..+|..++.+|+.+.. +.+++.+.+.++|+++.||.+++++||+|..
T Consensus 18 ~~~~~~~~~~L~~~L~d----~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 18 SQCKKLNDDELFRLLDD----HNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred HHHhhccHHHHHHHHhC----CCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 33333335555555533 345566666666554432 2444455555566666666666666666653
Q ss_pred hhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417 128 NITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR 207 (595)
Q Consensus 128 ~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~ 207 (595)
.-. .....+..|...++.|.+..|...|+.+|..+...... ....+...+..++.+++..+|.+++.++|.+-
T Consensus 84 ~~~--~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~- 156 (280)
T PRK09687 84 AKR--CQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN- 156 (280)
T ss_pred Ccc--chHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-
Confidence 210 00012333444434555666666666666555432211 12334444445555555555555444443210
Q ss_pred hhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 046417 208 VGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKV 246 (595)
Q Consensus 208 a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsI 246 (595)
-+..++.|...|.+++|.+|..|+.+||.+
T Consensus 157 ---------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 157 ---------DEAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred ---------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 133455666666666666666666666655
No 11
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=2e-07 Score=103.89 Aligned_cols=271 Identities=18% Similarity=0.179 Sum_probs=198.5
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCc--HHHHHHhhhhcCCCCCh-HHHHHHHHHHHHHHHHccccchhhHH
Q 046417 21 QRVITCLNKLADRDTLPVATAELESIARTLTQDS--FSSFLNCLQTTDSSSKS-PVRKQCVNLLTLLSRSHGDSLSPHLS 97 (595)
Q Consensus 21 ~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~--lp~fL~~L~d~~ss~kp-~vRKaaI~lLG~lAEg~gd~I~PhLp 97 (595)
..+.++|+ ..+-..++-|+.++-.+.+.+.-+. =..|+.-|.....+-++ ..|+.+..++.......|...-||+.
T Consensus 137 ~~l~~ll~-~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv 215 (569)
T KOG1242|consen 137 ELLLELLT-STKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV 215 (569)
T ss_pred HHHHHHhc-cccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH
Confidence 33344444 3344455566667777777665333 23566666666655555 44556888888888888988999999
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH
Q 046417 98 KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR 177 (595)
Q Consensus 98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~ 177 (595)
.++|.|+..+-|....||+|+.+++-++-..+.....-.++++++..|... .=.--.++.--|..+.+.++..+.-+++
T Consensus 216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp 294 (569)
T KOG1242|consen 216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLP 294 (569)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHh
Confidence 999999999999999999999999999888774322113899999999654 1112234444466777778887878999
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcc-------------------------------cC-----cCcHHhHH
Q 046417 178 KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGA-------------------------------RS-----KGVLDWLV 221 (595)
Q Consensus 178 ~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~-------------------------------~~-----~~yl~~lm 221 (595)
.|+|.+.+.|.+.+.++|.+.+.++-.+-.+... .| .|-+..++
T Consensus 295 ~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmv 374 (569)
T KOG1242|consen 295 DLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMV 374 (569)
T ss_pred HhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHH
Confidence 9999999999888888888887665443332110 11 24445567
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHh--HHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHH-HHhHhcCCC
Q 046417 222 PCLVEFLCCDDWATRKAAAEVLGKVAVFD--KDLATEYKRSCLAALETRRFDKVKIVRETMNRSL-EMWKEVPGV 293 (595)
Q Consensus 222 p~L~e~L~~dDW~~RkaAaEaLgsIA~av--ge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL-~~~K~i~~~ 293 (595)
|.|..-+...+-..++.++..++-++.-+ ...+.||++.+++-|+.--.|-++-||..+.+|| -+.+...-.
T Consensus 375 piL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 375 PILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence 77777777767777888999999999888 4689999999999999999999999999999999 555555533
No 12
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.91 E-value=2.8e-08 Score=98.57 Aligned_cols=193 Identities=18% Similarity=0.231 Sum_probs=134.1
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc-----cccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH-----GDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI 129 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~-----gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l 129 (595)
+..++..|.....+.+|..|.+++.-|-.++.++ .+.+.++|..++..|+..+.|..+.|-..+|.+++.|+..+
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555644445678999999999999999999 35556677788899999999999999888889999999888
Q ss_pred cCC--cch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHH-HHHHHHhhccCchhHHHHHHHHHHHH
Q 046417 130 TKP--SFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKL-LPRLGKAVRIEGFKAKAAVLGVIGSV 205 (595)
Q Consensus 130 ~~~--~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~L-l~rL~klL~~~~~kaK~alLsAIgSl 205 (595)
... ++. .++++|+..+ ++.++.+...|..||..+++..+ +..++ .+.+...+++.+.++|..++..+..+
T Consensus 85 ~~~~~~~~~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 85 GSHFEPYADILLPPLLKKL-GDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp GGGGHHHHHHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 542 111 2555566665 68888899999999999999764 33455 67777788999999999999999988
Q ss_pred HHhhc---ccC--cCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHh
Q 046417 206 VRVGG---ARS--KGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDL 253 (595)
Q Consensus 206 A~a~g---~~~--~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~ 253 (595)
+...+ ..+ ..+++.+++.|..++.|.+-.+|.+|-+++..+....|+.
T Consensus 159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 87544 222 2235889999999999999999999999999999988754
No 13
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.84 E-value=6.8e-08 Score=114.76 Aligned_cols=206 Identities=22% Similarity=0.209 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhH
Q 046417 35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSV 114 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~V 114 (595)
-+..|+..|-.++..++. .+.++..|. ++++.+|.+++.+|+.+..+ + ...+++.|+|+|+.|
T Consensus 668 VR~~Aa~aL~~l~~~~~~--~~~L~~~L~----~~d~~VR~~A~~aL~~~~~~--~---------~~~l~~~L~D~d~~V 730 (897)
T PRK13800 668 VRRAAAEGLRELVEVLPP--APALRDHLG----SPDPVVRAAALDVLRALRAG--D---------AALFAAALGDPDHRV 730 (897)
T ss_pred HHHHHHHHHHHHHhccCc--hHHHHHHhc----CCCHHHHHHHHHHHHhhccC--C---------HHHHHHHhcCCCHHH
Confidence 566677777777665543 234444443 25678888888887776411 1 113455667777777
Q ss_pred HHHHHHHHHHhhh------hhcCC-cc---------------hh-ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc
Q 046417 115 RSACVAATTAMSL------NITKP-SF---------------SV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP 171 (595)
Q Consensus 115 R~Ac~~aLg~LA~------~l~~~-~~---------------~~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~ 171 (595)
|.+++.+|+.+.. .+.++ +. .. .+..|. .++.|.++.|+..|+.+|..+... .
T Consensus 731 R~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~-~ll~D~d~~VR~aA~~aLg~~g~~--~- 806 (897)
T PRK13800 731 RIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVR-ALTGDPDPLVRAAALAALAELGCP--P- 806 (897)
T ss_pred HHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHH-HHhcCCCHHHHHHHHHHHHhcCCc--c-
Confidence 7777777665421 01111 00 00 134444 444788999999999988877432 1
Q ss_pred hHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417 172 EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK 251 (595)
Q Consensus 172 ~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg 251 (595)
.+.+.+..+|++++..+|.+++.+++.+. -+..++.|...|.|++|.+|++|+.+|+.+. +
T Consensus 807 ------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~ 867 (897)
T PRK13800 807 ------DDVAAATAALRASAWQVRQGAARALAGAA----------ADVAVPALVEALTDPHLDVRKAAVLALTRWP---G 867 (897)
T ss_pred ------hhHHHHHHHhcCCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC---C
Confidence 22345777888888889988888887432 1345688999999999999999999999971 1
Q ss_pred HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417 252 DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEM 286 (595)
Q Consensus 252 e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~ 286 (595)
+ +.....|.....|.-..||..+.+||+.
T Consensus 868 ~------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 868 D------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred C------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 1 1122233333448889999999999974
No 14
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=4e-07 Score=103.22 Aligned_cols=267 Identities=18% Similarity=0.193 Sum_probs=197.2
Q ss_pred hHHHHHHHHHh----hhcCCCC--hHHHHHHHHHHHHHhCC----cC-cHHHHHHhhhhcCCCCChHHHHHHHHHHHHHH
Q 046417 17 NDLKQRVITCL----NKLADRD--TLPVATAELESIARTLT----QD-SFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLS 85 (595)
Q Consensus 17 ~~lk~rvl~~L----~KL~DrD--T~r~A~~~LD~lA~~L~----~~-~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lA 85 (595)
..||-.|.+.| +.+.|.- -+..++-.|-+++..++ +. .++..++++.+.. .+.|.+=..++.+|--+|
T Consensus 398 ~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 398 DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLA 476 (859)
T ss_pred hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHH
Confidence 34555555443 3335433 33445566666666654 33 3777777777755 356899999999999999
Q ss_pred HHccc---------cchhhHHHHHHHHHhhccC---CChhHHHHHHHHHHHhhhhhcCCc--------------------
Q 046417 86 RSHGD---------SLSPHLSKMISTVSCRLRD---PDSSVRSACVAATTAMSLNITKPS-------------------- 133 (595)
Q Consensus 86 Eg~gd---------~I~PhLpkIL~~IvrrLkD---~ds~VR~Ac~~aLg~LA~~l~~~~-------------------- 133 (595)
+++.+ ..-|+.+.|+..+++.-.- .++..|.|+-.||+.|..+..+..
T Consensus 477 ea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~ 556 (859)
T KOG1241|consen 477 EAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTIS 556 (859)
T ss_pred HHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99854 3446888888888877443 567899999999999987776410
Q ss_pred --------------c----------h-----hccHH----HHHH---Hhhc-CChhHHHHHHHHHHHHHhcCCCchHHHH
Q 046417 134 --------------F----------S-----VLSKP----LIEL---ILVE-QDVNSQVGGAMCLAAAIDAAPNPEVEQL 176 (595)
Q Consensus 134 --------------~----------~-----~~l~P----Li~a---Ll~d-~nk~VQ~~AA~cLaaviE~a~d~~~~~L 176 (595)
+ + .-+++ ++.. +++. ..-.++..|.+|+.+++++++..-..|+
T Consensus 557 ~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym 636 (859)
T KOG1241|consen 557 SQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM 636 (859)
T ss_pred HHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH
Confidence 0 0 00111 1111 1222 3445889999999999999888778899
Q ss_pred HHHHHHHHHhh-ccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhHHh
Q 046417 177 RKLLPRLGKAV-RIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCD--DWATRKAAAEVLGKVAVFDKDL 253 (595)
Q Consensus 177 ~~Ll~rL~klL-~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~d--DW~~RkaAaEaLgsIA~avge~ 253 (595)
+.+.|-|..-| +-..+++-.++++.+|-++.+-+..+.||.+.+|..|.++|+++ +-.++-+.+-+.|-||.++|..
T Consensus 637 ~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~ 716 (859)
T KOG1241|consen 637 PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGAD 716 (859)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHh
Confidence 99999999999 55689999999999999999999999999999999999999875 5567778889999999999999
Q ss_pred HHHHHHHHHHHHHhcc---CCc--------hHHHHHHHHHHH
Q 046417 254 ATEYKRSCLAALETRR---FDK--------VKIVRETMNRSL 284 (595)
Q Consensus 254 f~py~~~~I~~Le~cr---fDK--------VK~VRda~~~aL 284 (595)
|.+|...++..|.... .|+ +--+|+++.+|-
T Consensus 717 F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay 758 (859)
T KOG1241|consen 717 FEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAY 758 (859)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHH
Confidence 9999999998887664 333 455677766653
No 15
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.79 E-value=4.3e-09 Score=82.46 Aligned_cols=55 Identities=27% Similarity=0.333 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHh
Q 046417 71 SPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAM 125 (595)
Q Consensus 71 p~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~L 125 (595)
|.+|++++.+||.+++.+++.+.||++++++.++..|+|+++.||.++|++||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999999999999999999999999975
No 16
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.76 E-value=2.7e-07 Score=104.13 Aligned_cols=219 Identities=15% Similarity=0.182 Sum_probs=154.4
Q ss_pred hHHHHHHHHHHHHHhCCcCc-----HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccC
Q 046417 35 TLPVATAELESIARTLTQDS-----FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRD 109 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~-----lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD 109 (595)
-+++.++..+.+...|+... ...++..|.-.++++....- -.+..||+++...+.-+.||||+|+..|+.+|+.
T Consensus 732 yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnn 810 (1172)
T KOG0213|consen 732 YRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNN 810 (1172)
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcC
Confidence 35778999999999887322 34555555555544443222 4567799999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhhhhcCC-c--chhccH-HHHHHHhhcCChhHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHH
Q 046417 110 PDSSVRSACVAATTAMSLNITKP-S--FSVLSK-PLIELILVEQDVNSQVGGAMCLAAAIDAAP-NPEVEQLRKLLPRLG 184 (595)
Q Consensus 110 ~ds~VR~Ac~~aLg~LA~~l~~~-~--~~~~l~-PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~-d~~~~~L~~Ll~rL~ 184 (595)
+.+.||+-+++.++.++.-+... + +..+|. -|.+.| ++..+-|-.....||.+++...+ ....|=...|+|+|.
T Consensus 811 ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEyl-geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrlt 889 (1172)
T KOG0213|consen 811 KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLT 889 (1172)
T ss_pred CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhc-CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccch
Confidence 99999999999999999765321 1 122333 366677 66677666555555555554421 111234567899999
Q ss_pred HhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHh--HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH--HhHHH
Q 046417 185 KAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDW--LVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK--DLATE 256 (595)
Q Consensus 185 klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~--lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg--e~f~p 256 (595)
-.|++.+-+++...|+.+|.|+.-|.+ +.+.=+| +-=-|.+.|.+-.-..|.+|.+++|.||.++| +.+..
T Consensus 890 PILknrheKVqen~IdLvg~IadrgpE-~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLat 964 (1172)
T KOG0213|consen 890 PILKNRHEKVQENCIDLVGTIADRGPE-YVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLAT 964 (1172)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCcc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHH
Confidence 999999999999999999999975543 2222122 11224556666566789999999999999998 34443
No 17
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.74 E-value=7.6e-07 Score=98.18 Aligned_cols=248 Identities=17% Similarity=0.137 Sum_probs=164.6
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH
Q 046417 18 DLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS 97 (595)
Q Consensus 18 ~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp 97 (595)
.+..-+.+...-|.+.++.-. .-+|..++.--.++.++.+++.|.....+++|.+||.|+.++.-+...+++.+...
T Consensus 76 ~~~l~~n~l~kdl~~~n~~~~-~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-- 152 (526)
T PF01602_consen 76 LLILIINSLQKDLNSPNPYIR-GLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-- 152 (526)
T ss_dssp HHHHHHHHHHHHHCSSSHHHH-HHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--
T ss_pred HHHHHHHHHHHhhcCCCHHHH-HHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--
Confidence 344444455555666664422 33455555544677788888888888888899999999999999999999876553
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcCCCchHH
Q 046417 98 KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAAPNPEVE 174 (595)
Q Consensus 98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a~d~~~~ 174 (595)
+++.+.+.|.|+++.|+.+++.++..+ ..- +.....++.+++..|. +..++-.|....-+|..++... . .
T Consensus 153 -~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~-~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~---~-~ 225 (526)
T PF01602_consen 153 -LIPKLKQLLSDKDPSVVSAALSLLSEI-KCN-DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME---P-E 225 (526)
T ss_dssp -HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCT-HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS---H-H
T ss_pred -HHHHHhhhccCCcchhHHHHHHHHHHH-ccC-cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC---h-h
Confidence 577888888999999999999888888 111 0010124555555553 6778888877666665444321 1 1
Q ss_pred HH--HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Q 046417 175 QL--RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD 252 (595)
Q Consensus 175 ~L--~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge 252 (595)
.- ..+++.+..+|.+.+. ..+++++..+...... .+++..+++.|..++.+.++.+|..++++|..|+.....
T Consensus 226 ~~~~~~~i~~l~~~l~s~~~---~V~~e~~~~i~~l~~~--~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~ 300 (526)
T PF01602_consen 226 DADKNRIIEPLLNLLQSSSP---SVVYEAIRLIIKLSPS--PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPP 300 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHH
T ss_pred hhhHHHHHHHHHHHhhcccc---HHHHHHHHHHHHhhcc--hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccch
Confidence 22 4577777777764443 3445777776654332 236788999999999999999999999999999887744
Q ss_pred hHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 046417 253 LATEYKRSCLAALETRRFDKVKIVRETMNRSL 284 (595)
Q Consensus 253 ~f~py~~~~I~~Le~crfDKVK~VRda~~~aL 284 (595)
.+. +... .+.-+++|.=..||-.+.+.|
T Consensus 301 ~v~-~~~~---~~~~l~~~~d~~Ir~~~l~lL 328 (526)
T PF01602_consen 301 AVF-NQSL---ILFFLLYDDDPSIRKKALDLL 328 (526)
T ss_dssp HHG-THHH---HHHHHHCSSSHHHHHHHHHHH
T ss_pred hhh-hhhh---hhheecCCCChhHHHHHHHHH
Confidence 333 2222 233444455566665544433
No 18
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.72 E-value=7e-08 Score=85.42 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hcC
Q 046417 73 VRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---VEQ 149 (595)
Q Consensus 73 vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~ 149 (595)
+|++++..|+.+|.+.+..+.+|+++||+.|++.+.|+|+.||.++|++|..++...-. ....++..+|++|. .|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~-~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG-EILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCC
Confidence 69999999999999999999999999999999999999999999999999999987742 22237777887774 488
Q ss_pred ChhHHHHHHHHHHHHH
Q 046417 150 DVNSQVGGAMCLAAAI 165 (595)
Q Consensus 150 nk~VQ~~AA~cLaavi 165 (595)
++.|+.+|.. |+.++
T Consensus 81 d~~Vr~~a~~-Ld~ll 95 (97)
T PF12755_consen 81 DENVRSAAEL-LDRLL 95 (97)
T ss_pred chhHHHHHHH-HHHHh
Confidence 9999999877 66543
No 19
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=6.4e-07 Score=101.09 Aligned_cols=206 Identities=23% Similarity=0.247 Sum_probs=151.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHH
Q 046417 66 DSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELI 145 (595)
Q Consensus 66 ~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aL 145 (595)
.++.+|++||-||.++--+..-++|++.|-+|++ +..|.||||+|..|++..+..||+.-.+. ..-|-|+|.-|
T Consensus 153 L~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL----~EkLeDpDp~V~SAAV~VICELArKnPkn--yL~LAP~ffkl 226 (877)
T KOG1059|consen 153 LNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRL----VEKLEDPDPSVVSAAVSVICELARKNPQN--YLQLAPLFYKL 226 (877)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHH----HHhccCCCchHHHHHHHHHHHHHhhCCcc--cccccHHHHHH
Confidence 3467899999999999999999999999988865 56899999999999999988888765421 12466777777
Q ss_pred hhcCChh-HHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhh---cc-cCcCcHHh
Q 046417 146 LVEQDVN-SQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG---GA-RSKGVLDW 219 (595)
Q Consensus 146 l~d~nk~-VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~---g~-~~~~yl~~ 219 (595)
+....-+ +-+.-.--++++ .++.|.|. +|++.|..+++ +..+...++.||.+++.+. |. .......-
T Consensus 227 lttSsNNWmLIKiiKLF~aL-----tplEPRLgKKLieplt~li~--sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqL 299 (877)
T KOG1059|consen 227 LVTSSNNWVLIKLLKLFAAL-----TPLEPRLGKKLIEPITELME--STVAMSLLYECVNTVVAVSMSSGMSDHSASIQL 299 (877)
T ss_pred HhccCCCeehHHHHHHHhhc-----cccCchhhhhhhhHHHHHHH--hhHHHHHHHHHHHHheeehhccCCCCcHHHHHH
Confidence 6532211 222211112222 22335555 58899999994 4456788889999988752 21 22234566
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417 220 LVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 220 lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~ 291 (595)
++.-|..|+.++|..+|--++.||+.|+.....++..++.-+++.|. ||=..|| .+||.++-.+.
T Consensus 300 CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~----DkD~SIR---lrALdLl~gmV 364 (877)
T KOG1059|consen 300 CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLD----DKDESIR---LRALDLLYGMV 364 (877)
T ss_pred HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhc----cCCchhH---HHHHHHHHHHh
Confidence 78889999999999999999999999999999999999999888887 8877777 45555554433
No 20
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.60 E-value=1.9e-06 Score=85.53 Aligned_cols=174 Identities=17% Similarity=0.129 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHHhC-CcCcHHHHHH-------hhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhh
Q 046417 35 TLPVATAELESIARTL-TQDSFSSFLN-------CLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCR 106 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L-~~~~lp~fL~-------~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr 106 (595)
.+.-|+..|..++..- +.+..+.|+. .|.....+.++.+-+.++.+++.++...+..+.||+..++|.++++
T Consensus 23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~ 102 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKK 102 (228)
T ss_dssp HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 5556888898888866 3233344433 4444556667889999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC---Cch--HHHHHHHHH
Q 046417 107 LRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP---NPE--VEQLRKLLP 181 (595)
Q Consensus 107 LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~---d~~--~~~L~~Ll~ 181 (595)
+.|+...||+++..+|-.|..++. ....++.+++.....+.++.+...++.+|..+++..+ ..+ ...++.+.+
T Consensus 103 ~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~ 180 (228)
T PF12348_consen 103 LGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVK 180 (228)
T ss_dssp GG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHH
Confidence 999999999999999999999873 0112434555555477888888899999999999866 222 124688999
Q ss_pred HHHHhhccCchhHHHHHHHHHHHHHHhhc
Q 046417 182 RLGKAVRIEGFKAKAAVLGVIGSVVRVGG 210 (595)
Q Consensus 182 rL~klL~~~~~kaK~alLsAIgSlA~a~g 210 (595)
-+.+++.+++..+|.++-.++..+...-+
T Consensus 181 ~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 181 ALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999988888876443
No 21
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=2e-05 Score=86.45 Aligned_cols=258 Identities=16% Similarity=0.174 Sum_probs=189.6
Q ss_pred hhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccch---hhHHHHHHHHH
Q 046417 28 NKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLS---PHLSKMISTVS 104 (595)
Q Consensus 28 ~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~---PhLpkIL~~Iv 104 (595)
+-|+|.|++++.+..|-..-..-.+..++-++.++.+...+.+|..|-..+.- +++.-+..+. +-|..++-.+.
T Consensus 188 ~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af---~ael~~~~~l~~~~lL~s~~~~la 264 (533)
T KOG2032|consen 188 SQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAF---FAELKRPKELDKTGLLGSVLLSLA 264 (533)
T ss_pred hhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHHH---HHHHhCcccccccccHHHHHHHHH
Confidence 44688899999999987644444445688888888888888888877766654 6666665553 47889999999
Q ss_pred hhccCCChhHHHHHHHHHHHhhhhhcCCc--ch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcC-CCchHHHHHHHH
Q 046417 105 CRLRDPDSSVRSACVAATTAMSLNITKPS--FS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAA-PNPEVEQLRKLL 180 (595)
Q Consensus 105 rrLkD~ds~VR~Ac~~aLg~LA~~l~~~~--~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a-~d~~~~~L~~Ll 180 (595)
.+..||+..+|.-||-.||.+++.+.++. .. ..+.-++-+|..+.++.||--|..||..+.|-+ .+.+.+|+-.+-
T Consensus 265 ~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ia 344 (533)
T KOG2032|consen 265 NKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIA 344 (533)
T ss_pred HhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHH
Confidence 99999999999999999999998864321 11 256666677766778899999999999999995 566678999999
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHHhhccc----Cc------------------------------------------
Q 046417 181 PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR----SK------------------------------------------ 214 (595)
Q Consensus 181 ~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~----~~------------------------------------------ 214 (595)
-|+-.++++..-+++.+++.+.|.++-..|.. |.
T Consensus 345 lrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~ 424 (533)
T KOG2032|consen 345 LRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELY 424 (533)
T ss_pred HHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHH
Confidence 99999999998899999998888887643210 00
Q ss_pred CcH----HhHHHHHHHhc-------------------------cCCCH-HHHHHHHHHHHHHHHHhHHhHHHHH--HHHH
Q 046417 215 GVL----DWLVPCLVEFL-------------------------CCDDW-ATRKAAAEVLGKVAVFDKDLATEYK--RSCL 262 (595)
Q Consensus 215 ~yl----~~lmp~L~e~L-------------------------~~dDW-~~RkaAaEaLgsIA~avge~f~py~--~~~I 262 (595)
.|| +..++..+.|. .+..| .+|.+|.-..+.+-..+-+-.-+|. ..+.
T Consensus 425 ~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~ 504 (533)
T KOG2032|consen 425 HLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLR 504 (533)
T ss_pred HHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHH
Confidence 011 11122222221 13468 6777777777777666544444443 4556
Q ss_pred HHHHhccCCchHHHHHHHHHHHHHhH
Q 046417 263 AALETRRFDKVKIVRETMNRSLEMWK 288 (595)
Q Consensus 263 ~~Le~crfDKVK~VRda~~~aL~~~K 288 (595)
..|...++|--.-|++++.+|++++-
T Consensus 505 ~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 505 SSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHHHccCCCchhHHHHHHHhhhHh
Confidence 77999999999999999999998763
No 22
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=4.4e-06 Score=92.54 Aligned_cols=255 Identities=15% Similarity=0.155 Sum_probs=182.7
Q ss_pred hHHHHHHHHHHHHHhCC----cCcHHHHHH-hhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccC
Q 046417 35 TLPVATAELESIARTLT----QDSFSSFLN-CLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRD 109 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~----~~~lp~fL~-~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD 109 (595)
-++.|+-+|+.+++.+- .++|.-+++ ...++..+.....||+++..++.++-+.|....+|+.+|++=++..+.|
T Consensus 16 kRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D 95 (675)
T KOG0212|consen 16 KRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSD 95 (675)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccC
Confidence 68899999999999874 334888888 5578888888899999999999999999977788999999999999999
Q ss_pred CChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHH
Q 046417 110 PDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAA--PNPEVEQLRKLLPRLG 184 (595)
Q Consensus 110 ~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a--~d~~~~~L~~Ll~rL~ 184 (595)
+|..||--+|++|=-++.-+- .....|+.-+|++|- .|.+.+|+.+|-+ |+.++... .....=-++.++|-|-
T Consensus 96 ~d~~vRyyACEsLYNiaKv~k-~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeL-LdRLikdIVte~~~tFsL~~~ipLL~ 173 (675)
T KOG0212|consen 96 QDSQVRYYACESLYNIAKVAK-GEVLVYFNEIFDVLCKLSADSDQNVRGGAEL-LDRLIKDIVTESASTFSLPEFIPLLR 173 (675)
T ss_pred ccceeeeHhHHHHHHHHHHhc-cCcccchHHHHHHHHHHhcCCccccccHHHH-HHHHHHHhccccccccCHHHHHHHHH
Confidence 999999999999988887552 233358888888873 4788889988877 88877652 1110112334444333
Q ss_pred HhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH---HhHHHHHHHH
Q 046417 185 KAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK---DLATEYKRSC 261 (595)
Q Consensus 185 klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg---e~f~py~~~~ 261 (595)
.-+-..+...|..+++-|.-+-.+-+..+-.|++.+++.|..+|+|+.-.+|--+=-+|+.+-..+. ..| .| ...
T Consensus 174 eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~-d~-~~~ 251 (675)
T KOG0212|consen 174 ERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM-DY-DDM 251 (675)
T ss_pred HHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc-Cc-ccc
Confidence 3333335557788899888777777777889999999999999999999999877777777765553 121 11 122
Q ss_pred HHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417 262 LAALETRRFDKVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 262 I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~ 293 (595)
++++-..---....++..+..=|+-.-.|+|.
T Consensus 252 i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~ 283 (675)
T KOG0212|consen 252 INVLVPHLQSSEPEIQLKALTWIQEFVKIPGR 283 (675)
T ss_pred hhhccccccCCcHHHHHHHHHHHHHHhcCCCc
Confidence 33322222223455555555555555556654
No 23
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=2.2e-06 Score=95.17 Aligned_cols=246 Identities=16% Similarity=0.182 Sum_probs=168.2
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHhC--------CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-
Q 046417 19 LKQRVITCLNKLADRDTLPVATAELESIARTL--------TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG- 89 (595)
Q Consensus 19 lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L--------~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g- 89 (595)
.-.+++++|.+=.+...+--|+-.|-.||..- +...+|.|+.++.. +...+|+.++-+||.+|--.+
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s----~~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS----PSADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC----CcHHHHHHHHHHHhccccCChH
Confidence 34455666654222334445888888888742 24448888888875 457999999999999986543
Q ss_pred --ccchhhHHHHHHHHHhhccCCCh--hHHHHHHHHHHHhhhhhcCCcchhccHHHHHH---HhhcCChhHHHHHHHHHH
Q 046417 90 --DSLSPHLSKMISTVSCRLRDPDS--SVRSACVAATTAMSLNITKPSFSVLSKPLIEL---ILVEQDVNSQVGGAMCLA 162 (595)
Q Consensus 90 --d~I~PhLpkIL~~IvrrLkD~ds--~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~a---Ll~d~nk~VQ~~AA~cLa 162 (595)
|++..+ .+|.-++..+..+++ .+|. +.|+|..|++.--..|....+.+++.+ |+...|..|...||-||.
T Consensus 186 ~Rd~vl~~--g~l~pLl~~l~~~~~~~~lRn-~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAls 262 (514)
T KOG0166|consen 186 CRDYVLSC--GALDPLLRLLNKSDKLSMLRN-ATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALS 262 (514)
T ss_pred HHHHHHhh--cchHHHHHHhccccchHHHHH-HHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 555442 456666677777765 4554 569999999876322222233344443 346889999999999999
Q ss_pred HHHhcCCCchHH-HHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhcc-CCCHHHHHHH
Q 046417 163 AAIDAAPNPEVE-QLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLC-CDDWATRKAA 239 (595)
Q Consensus 163 aviE~a~d~~~~-~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~-~dDW~~RkaA 239 (595)
-+.++..+.+-- +--.++|||+++|.++..+++..+|-+||.|+...+.-....+ ..++|+|..+++ +..-..||.|
T Consensus 263 yLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEA 342 (514)
T KOG0166|consen 263 YLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEA 342 (514)
T ss_pred HHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHH
Confidence 999887665532 3345999999999999999998889999986643222111111 346889999988 5555689999
Q ss_pred HHHHHHHHHHhHHh-----HHHHHHHHHHHHHhccCC
Q 046417 240 AEVLGKVAVFDKDL-----ATEYKRSCLAALETRRFD 271 (595)
Q Consensus 240 aEaLgsIA~avge~-----f~py~~~~I~~Le~crfD 271 (595)
+=+|+-|+..-.+- -+...+.++.+|+..-||
T Consensus 343 cW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~ 379 (514)
T KOG0166|consen 343 CWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFD 379 (514)
T ss_pred HHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchH
Confidence 99999998744321 223457888889888554
No 24
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.42 E-value=8.3e-06 Score=96.34 Aligned_cols=189 Identities=21% Similarity=0.244 Sum_probs=133.3
Q ss_pred HHHHHHhhhhcCCCCC-hHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc
Q 046417 55 FSSFLNCLQTTDSSSK-SPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS 133 (595)
Q Consensus 55 lp~fL~~L~d~~ss~k-p~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~ 133 (595)
++.+.+||.. -+ +..|.+++.+|..++..-.+- .-|.+|+||++-.+.|+++.||.++..||.++-..+-+.+
T Consensus 424 vs~lts~IR~----lk~~~tK~~ALeLl~~lS~~i~de--~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~ 497 (1431)
T KOG1240|consen 424 VSVLTSCIRA----LKTIQTKLAALELLQELSTYIDDE--VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIP 497 (1431)
T ss_pred HHHHHHHHHh----hhcchhHHHHHHHHHHHhhhcchH--HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCC
Confidence 4455555544 33 578889999998888766543 2577999999999999999999999999998887665422
Q ss_pred ------chhccHHHHHHHhhc-CChhHHHHHHHHHHHHHhcC------------------CCc---h----HHHHHH---
Q 046417 134 ------FSVLSKPLIELILVE-QDVNSQVGGAMCLAAAIDAA------------------PNP---E----VEQLRK--- 178 (595)
Q Consensus 134 ------~~~~l~PLi~aLl~d-~nk~VQ~~AA~cLaaviE~a------------------~d~---~----~~~L~~--- 178 (595)
+..|+-|-+..|+.| ....|-++=|.||+.+-+.| ++. . ..+++.
T Consensus 498 ~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 498 PSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH 577 (1431)
T ss_pred cccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence 123777877777767 45557777677766543211 110 0 113333
Q ss_pred -HHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417 179 -LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK 251 (595)
Q Consensus 179 -Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg 251 (595)
+-..+..+|.++...+|.+++..|+-+-.==|.. .--+.+++.|..||.|.||.+|.+-+|.|.-|+..+|
T Consensus 578 ~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG 649 (1431)
T KOG1240|consen 578 TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG 649 (1431)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence 3344556777777789999998877665422221 1126789999999999999999999999999988776
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.39 E-value=2.3e-05 Score=98.58 Aligned_cols=241 Identities=17% Similarity=0.162 Sum_probs=169.1
Q ss_pred cCCCChHHHHHHHHHHHHHh--------CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh-HHHHH
Q 046417 30 LADRDTLPVATAELESIART--------LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH-LSKMI 100 (595)
Q Consensus 30 L~DrDT~r~A~~~LD~lA~~--------L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph-LpkIL 100 (595)
..+.|.+.-|+..|..++.+ .....++.|+..|.. .+...|+.++.+|+.++.+..+....- =...+
T Consensus 415 ~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s----~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaI 490 (2102)
T PLN03200 415 MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL----SSEQQQEYAVALLAILTDEVDESKWAITAAGGI 490 (2102)
T ss_pred cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 34567778888888777743 123347888887774 457899999999999998765422111 13568
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHhhhhhcCC-cch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH
Q 046417 101 STVSCRLRDPDSSVRSACVAATTAMSLNITKP-SFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL 176 (595)
Q Consensus 101 ~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~-~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L 176 (595)
|.+++.|+.++..++..|+|+|+.++.+-.+. ..+ -.++||++.| ...+..+|.-|+.+|..++......
T Consensus 491 P~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~d~~----- 564 (2102)
T PLN03200 491 PPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRTADAA----- 564 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhccchh-----
Confidence 88999999999999999999999999642110 111 2688999998 6778889999999999998764332
Q ss_pred HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhccc--CcCc--HHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Q 046417 177 RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR--SKGV--LDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD 252 (595)
Q Consensus 177 ~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~--~~~y--l~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge 252 (595)
.++.+..+|.++..+.+..++.++|.+...+... .... ....+|.|.+.+.+++-..++.|+.+|..++..-.+
T Consensus 565 --~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 565 --TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred --HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 3366677888888888888899999887754321 0000 135789999999999989999999999999864332
Q ss_pred h-----HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417 253 L-----ATEYKRSCLAALETRRFDKVKIVRETMNRSLEM 286 (595)
Q Consensus 253 ~-----f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~ 286 (595)
. ...-.++++..|....|| ||..+..||-.
T Consensus 643 ~~~avv~agaIpPLV~LLss~~~~----v~keAA~AL~n 677 (2102)
T PLN03200 643 LCESLATDEIINPCIKLLTNNTEA----VATQSARALAA 677 (2102)
T ss_pred HHHHHHHcCCHHHHHHHHhcCChH----HHHHHHHHHHH
Confidence 1 122245666677655443 34444445433
No 26
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=7.7e-06 Score=98.38 Aligned_cols=224 Identities=17% Similarity=0.198 Sum_probs=162.3
Q ss_pred HHHHHHHHHHhCC-cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHH
Q 046417 39 ATAELESIARTLT-QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSA 117 (595)
Q Consensus 39 A~~~LD~lA~~L~-~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~A 117 (595)
-.++|=.||..|+ |+.+--||+.=.. +.-|..|+.+.-=||+|++-.++.+.||++++||-+.|-==||+..|++|
T Consensus 941 TYKELc~LASdl~qPdLVYKFM~LAnh---~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~a 1017 (1702)
T KOG0915|consen 941 TYKELCNLASDLGQPDLVYKFMQLANH---NATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDA 1017 (1702)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhh---hchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHH
Confidence 3579999999998 5667788876543 34599999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHhhhh---hcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhhccCchh
Q 046417 118 CVAATTAMSLN---ITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP-NPEVEQLRKLLPRLGKAVRIEGFK 193 (595)
Q Consensus 118 c~~aLg~LA~~---l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~-d~~~~~L~~Ll~rL~klL~~~~~k 193 (595)
-..--+.|... ..+.-+-.+++-|+..| ++..=.|.+++|+||.-++.+=+ +...+.+++|-..+++..++=+=-
T Consensus 1018 M~sIW~~Li~D~k~~vd~y~neIl~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEs 1096 (1702)
T KOG0915|consen 1018 MTSIWNALITDSKKVVDEYLNEILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKES 1096 (1702)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64333333321 11000001444455555 56777899999999999999843 333577888888888888654333
Q ss_pred HHHHHH---HHHHHHHH-----hhcccCcCcHHhHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 046417 194 AKAAVL---GVIGSVVR-----VGGARSKGVLDWLVPCLVEF-LCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAA 264 (595)
Q Consensus 194 aK~alL---sAIgSlA~-----a~g~~~~~yl~~lmp~L~e~-L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~ 264 (595)
+|.|+= ++++.+.. +.+......++.++|+|.+- ..++-=.+|..++-+|..|+...|..+.||.+..|..
T Consensus 1097 VR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ 1176 (1702)
T KOG0915|consen 1097 VREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPL 1176 (1702)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHH
Confidence 554433 45555443 12344567788888888765 2366678999999999999999998888887666555
Q ss_pred HH
Q 046417 265 LE 266 (595)
Q Consensus 265 Le 266 (595)
|-
T Consensus 1177 ll 1178 (1702)
T KOG0915|consen 1177 LL 1178 (1702)
T ss_pred HH
Confidence 43
No 27
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=4.8e-06 Score=100.11 Aligned_cols=234 Identities=18% Similarity=0.147 Sum_probs=171.1
Q ss_pred CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc--ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc
Q 046417 53 DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG--DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT 130 (595)
Q Consensus 53 ~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g--d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~ 130 (595)
..+..++..|..-..+++|..|++++--|=.+...|+ ..+.-++++|.......|.|.|.-+++.+...||..=+ +.
T Consensus 814 ~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe-lg 892 (1702)
T KOG0915|consen 814 TRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE-LG 892 (1702)
T ss_pred ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe-cC
Confidence 3366777777776788999999999888878888887 66788999999999999999999999999888664221 11
Q ss_pred CC---------------------------------------c---chh---ccHHHHHHHhhcCC--------------h
Q 046417 131 KP---------------------------------------S---FSV---LSKPLIELILVEQD--------------V 151 (595)
Q Consensus 131 ~~---------------------------------------~---~~~---~l~PLi~aLl~d~n--------------k 151 (595)
+. | -++ -+-.|..-| ++++ =
T Consensus 893 d~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl-~qPdLVYKFM~LAnh~A~w 971 (1702)
T KOG0915|consen 893 DSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDL-GQPDLVYKFMQLANHNATW 971 (1702)
T ss_pred CchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhc-CChHHHHHHHHHhhhhchh
Confidence 10 0 000 111222222 1111 1
Q ss_pred hHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCC
Q 046417 152 NSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCD 231 (595)
Q Consensus 152 ~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~d 231 (595)
+...|||-.+.++.+.+.+.+.||+.+|+|||+++-=+|..+++.+-.+.-++++.-....-..|+..++.-|..-+++.
T Consensus 972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~k 1051 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSK 1051 (1702)
T ss_pred hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccch
Confidence 12357888899999999888999999999999999999999999888888887775444444688999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhH-HhHHH----HHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCC
Q 046417 232 DWATRKAAAEVLGKVAVFDK-DLATE----YKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPG 292 (595)
Q Consensus 232 DW~~RkaAaEaLgsIA~avg-e~f~p----y~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~ 292 (595)
+|++|.++|.||.-+-..-. +-+.. +-..+.++++ |=.-.||+++..+...+-.+--
T Consensus 1052 ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmD----DIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1052 EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMD----DIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998876542 23333 3334344443 4347899999999988877543
No 28
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.36 E-value=3.1e-06 Score=75.01 Aligned_cols=93 Identities=19% Similarity=0.117 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHH
Q 046417 197 AVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIV 276 (595)
Q Consensus 197 alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~V 276 (595)
+.+-++++++.+-+.....|++.++|++..++.|+||.+|..|+|+|+.|+...++.+.+|.+.+...|-..-.|--.-|
T Consensus 5 ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~V 84 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENV 84 (97)
T ss_pred HHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhH
Confidence 44455666665555557899999999999999999999999999999999999988778899999999998888999999
Q ss_pred HHHHHHHHHHhHh
Q 046417 277 RETMNRSLEMWKE 289 (595)
Q Consensus 277 Rda~~~aL~~~K~ 289 (595)
|.++..--+++|+
T Consensus 85 r~~a~~Ld~llkd 97 (97)
T PF12755_consen 85 RSAAELLDRLLKD 97 (97)
T ss_pred HHHHHHHHHHhcC
Confidence 9998777777663
No 29
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=4.9e-05 Score=84.51 Aligned_cols=267 Identities=15% Similarity=0.126 Sum_probs=198.5
Q ss_pred HHHHHHHhhhcC-CCC-hHHHHHHHHHHHHHhCC--cC-c--HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc
Q 046417 20 KQRVITCLNKLA-DRD-TLPVATAELESIARTLT--QD-S--FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL 92 (595)
Q Consensus 20 k~rvl~~L~KL~-DrD-T~r~A~~~LD~lA~~L~--~~-~--lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I 92 (595)
...+..+|-||+ |-| +-+-|++.||++.+.+. .. . ++.|++.|.+.....+|..|.+.+.-+-++=..-+-.+
T Consensus 123 Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m 202 (675)
T KOG0212|consen 123 FNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEM 202 (675)
T ss_pred hHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHH
Confidence 456677888884 666 78889999999999875 22 2 89999999999888899999999999999988888788
Q ss_pred hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh----ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcC
Q 046417 93 SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV----LSKPLIELILVEQDVNSQVGGAMCLAAAIDAA 168 (595)
Q Consensus 93 ~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~----~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a 168 (595)
..|||.+++-+.+-|.|+...||.-|-.+++.+=..+...|... ...-|+..+ +.+++-.|..|..=+..++.-.
T Consensus 203 ~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l-~ss~~~iq~~al~Wi~efV~i~ 281 (675)
T KOG0212|consen 203 ISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHL-QSSEPEIQLKALTWIQEFVKIP 281 (675)
T ss_pred HhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccc-cCCcHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999988887775444331 233344444 5678888988877778888777
Q ss_pred CCchHHHHHHHHHHHHHhhccCchh-HH---HHHHHHHHHHHHhh--cccCcCcHHhHHHHHHHhccCCCHHHHHHHHHH
Q 046417 169 PNPEVEQLRKLLPRLGKAVRIEGFK-AK---AAVLGVIGSVVRVG--GARSKGVLDWLVPCLVEFLCCDDWATRKAAAEV 242 (595)
Q Consensus 169 ~d~~~~~L~~Ll~rL~klL~~~~~k-aK---~alLsAIgSlA~a~--g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEa 242 (595)
+...++|+.+++..++.++.+..-+ .| ..+-..+-++.... +.. --+..+|..|..+++++.-.+|.++.+-
T Consensus 282 g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~--id~~~ii~vl~~~l~~~~~~tri~~L~W 359 (675)
T KOG0212|consen 282 GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE--IDYGSIIEVLTKYLSDDREETRIAVLNW 359 (675)
T ss_pred CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc--cchHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 8888899999999999999765443 33 22223344444322 221 1235789999999999999999999999
Q ss_pred HHHHHHHhH-HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417 243 LGKVAVFDK-DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 243 LgsIA~avg-e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~ 293 (595)
+-.+-.-.+ +.+. |...+...|-..-.|.=- +.+..+|.++..|...
T Consensus 360 i~~l~~~~p~ql~~-h~~~if~tLL~tLsd~sd---~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 360 IILLYHKAPGQLLV-HNDSIFLTLLKTLSDRSD---EVVLLALSLLASICSS 407 (675)
T ss_pred HHHHHhhCcchhhh-hccHHHHHHHHhhcCchh---HHHHHHHHHHHHHhcC
Confidence 999877664 4444 444444443333335433 3467788888888744
No 30
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.34 E-value=5e-05 Score=95.66 Aligned_cols=252 Identities=12% Similarity=0.128 Sum_probs=179.6
Q ss_pred CCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccc-cchhh---HHHHHHHHHhh
Q 046417 31 ADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGD-SLSPH---LSKMISTVSCR 106 (595)
Q Consensus 31 ~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd-~I~Ph---LpkIL~~Ivrr 106 (595)
+|...++.|+..|-.++..-+++.+++++..|. ++++..+..+++.+|.+...... .+... -...++.|+..
T Consensus 542 gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl----sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L 617 (2102)
T PLN03200 542 GGPKGQEIAAKTLTKLVRTADAATISQLTALLL----GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL 617 (2102)
T ss_pred CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhc----CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH
Confidence 455588889999999988777777888776643 45678888999999988775542 11111 13578899999
Q ss_pred ccCCChhHHHHHHHHHHHhhhhhcCCc--ch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch-HHHHHH-HH
Q 046417 107 LRDPDSSVRSACVAATTAMSLNITKPS--FS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE-VEQLRK-LL 180 (595)
Q Consensus 107 LkD~ds~VR~Ac~~aLg~LA~~l~~~~--~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~-~~~L~~-Ll 180 (595)
|+.++..++.-++|+|..|+..-.+.. .+ -.++||+..| ...+..++..||.||..+..+....- ..++.. .+
T Consensus 618 L~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV 696 (2102)
T PLN03200 618 LSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSIKENRKVSYAAEDAI 696 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCH
Confidence 999999999999999999986432211 11 2789999998 56777789999999999886543322 234443 78
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh--HHhHHHHH
Q 046417 181 PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD--KDLATEYK 258 (595)
Q Consensus 181 ~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av--ge~f~py~ 258 (595)
+.|+++|+.++..++..++.+++.++..+.....-.-...++.|.++|.+..-..|..|+-+|..+.... .+.+..|.
T Consensus 697 ~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~ 776 (2102)
T PLN03200 697 KPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSV 776 (2102)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 8899999999999999999999999976532211111345899999999888899999999999998754 24444443
Q ss_pred ------HHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417 259 ------RSCLAALETRRFDKVKIVRETMNRSLEMWKE 289 (595)
Q Consensus 259 ------~~~I~~Le~crfDKVK~VRda~~~aL~~~K~ 289 (595)
...+.+|+.--+|-+.. -| +.++|..+-+
T Consensus 777 ~~~g~v~~l~~~L~~~~~~~~~~-~~-al~~l~~l~~ 811 (2102)
T PLN03200 777 QCRGTVLALVDLLNSTDLDSSAT-SE-ALEALALLAR 811 (2102)
T ss_pred HHhCcHHHHHHHHhcCCcchhhH-HH-HHHHHHHHHh
Confidence 44566677665654432 11 2444544444
No 31
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=5.9e-06 Score=91.80 Aligned_cols=216 Identities=14% Similarity=0.144 Sum_probs=156.6
Q ss_pred CCChHHHHHHHHHHHHHhCC---------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh-HHHHHH
Q 046417 32 DRDTLPVATAELESIARTLT---------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH-LSKMIS 101 (595)
Q Consensus 32 DrDT~r~A~~~LD~lA~~L~---------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph-LpkIL~ 101 (595)
|.+.+..|.+.+-.+...-. ...+|.|+.++.. +.++..+.++.-+|..+|.|-.+.-.-. =...+|
T Consensus 79 ~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~---~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp 155 (514)
T KOG0166|consen 79 DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSR---DDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVP 155 (514)
T ss_pred CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHcc---CCChhHHHHHHHHHHHHhcCchhhccccccCCchH
Confidence 44455556666655444321 2337888888873 3468899999999999999876433111 124577
Q ss_pred HHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch----hccHHHHHHHhhcCCh-hHHHHHHHHHHHHHhcC-CCchHHH
Q 046417 102 TVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS----VLSKPLIELILVEQDV-NSQVGGAMCLAAAIDAA-PNPEVEQ 175 (595)
Q Consensus 102 ~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~----~~l~PLi~aLl~d~nk-~VQ~~AA~cLaaviE~a-~d~~~~~ 175 (595)
.+++.|..|+..|++.|+||||-+|.+...-... ..+.||+..|. ..++ ..-.-+.-+|-.+|.+- +.+....
T Consensus 156 ~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~-~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~ 234 (514)
T KOG0166|consen 156 IFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLN-KSDKLSMLRNATWTLSNLCRGKNPSPPFDV 234 (514)
T ss_pred HHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhc-cccchHHHHHHHHHHHHHHcCCCCCCcHHH
Confidence 8999999999999999999999999765321111 28899999994 3443 34456788899999995 5555688
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417 176 LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK 251 (595)
Q Consensus 176 L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg 251 (595)
+..++|-|.+++.+..-.+..-+.-||+-+.....+...-.+ ..++|.|+++|.+.+-.++-+|+-++|.|+++-.
T Consensus 235 v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d 311 (514)
T KOG0166|consen 235 VAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD 311 (514)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccH
Confidence 999999999999999988776556666666543322211111 3478999999999998999999999999887654
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.33 E-value=6.1e-05 Score=83.19 Aligned_cols=176 Identities=16% Similarity=0.251 Sum_probs=112.2
Q ss_pred HHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch-
Q 046417 57 SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS- 135 (595)
Q Consensus 57 ~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~- 135 (595)
.++..+....++.+...||-+.+.+..+....++ .+.-++..+.+-|+++++.+|..|..+++.++.. ...
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~----~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~----~~~~ 113 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE----LLILIINSLQKDLNSPNPYIRGLALRTLSNIRTP----EMAE 113 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH----HHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc----chhh
Confidence 3333444444456788888888888888888877 3334677788888888888888888888887742 111
Q ss_pred hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHH-HHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCc
Q 046417 136 VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRK-LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSK 214 (595)
Q Consensus 136 ~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~-Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~ 214 (595)
.+++++...| .+++++|+..|+.|+..+....++. ++. +.+.+.++|++++..+..+++.++..+ ......+.
T Consensus 114 ~l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p~~----~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~ 187 (526)
T PF01602_consen 114 PLIPDVIKLL-SDPSPYVRKKAALALLKIYRKDPDL----VEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK 187 (526)
T ss_dssp HHHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCHCC----HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT
T ss_pred HHHHHHHHHh-cCCchHHHHHHHHHHHHHhccCHHH----HHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh
Confidence 2444454444 6888888988998888888775553 333 677888888888877777777777766 11111112
Q ss_pred CcHHhHHHHHHHhccC-CCHHHHHHHHHHHHHHH
Q 046417 215 GVLDWLVPCLVEFLCC-DDWATRKAAAEVLGKVA 247 (595)
Q Consensus 215 ~yl~~lmp~L~e~L~~-dDW~~RkaAaEaLgsIA 247 (595)
.++..++..|...+.. +.| .+..++.+|..++
T Consensus 188 ~~~~~~~~~L~~~l~~~~~~-~q~~il~~l~~~~ 220 (526)
T PF01602_consen 188 SLIPKLIRILCQLLSDPDPW-LQIKILRLLRRYA 220 (526)
T ss_dssp THHHHHHHHHHHHHTCCSHH-HHHHHHHHHTTST
T ss_pred hhHHHHHHHhhhcccccchH-HHHHHHHHHHhcc
Confidence 4455555555555443 344 3444555555443
No 33
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.32 E-value=0.00011 Score=82.40 Aligned_cols=229 Identities=18% Similarity=0.243 Sum_probs=146.3
Q ss_pred HHHHHH-HHHhhhcCCCChHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh
Q 046417 18 DLKQRV-ITCLNKLADRDTLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH 95 (595)
Q Consensus 18 ~lk~rv-l~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph 95 (595)
+++..+ +.||+. +++|....+...|+.+...+.+.. ++.+.+.|..-..++++.+|+-++..++.+++.... ...-
T Consensus 37 ~~~~~~lf~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-~~~~ 114 (503)
T PF10508_consen 37 RLPEPVLFDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-AAQL 114 (503)
T ss_pred hchHHHHHHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-HHHH
Confidence 444444 334442 366777778888999999887666 888888888888899999999999999998865533 2222
Q ss_pred H--HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhc----cHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC
Q 046417 96 L--SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVL----SKPLIELILVEQDVNSQVGGAMCLAAAIDAAP 169 (595)
Q Consensus 96 L--pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~----l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~ 169 (595)
+ ..+++.|+..|.|+|..|-.+|..+|..++.+-. ....+ +.+-+..++...+..+.....-++..+... .
T Consensus 115 ~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~-S 191 (503)
T PF10508_consen 115 LVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH-S 191 (503)
T ss_pred hcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc-C
Confidence 2 5789999999999999999999999999997431 11111 122233333343544554433333333221 2
Q ss_pred CchHHHHHH--HHHHHHHhhccCchhHHHHHHHHHHHHHHhh-cc-----------------------------------
Q 046417 170 NPEVEQLRK--LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG-GA----------------------------------- 211 (595)
Q Consensus 170 d~~~~~L~~--Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~-g~----------------------------------- 211 (595)
+....+... +++.+++.|++++.-+|..+++.+..+|..- |.
T Consensus 192 ~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~ 271 (503)
T PF10508_consen 192 PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMK 271 (503)
T ss_pred HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHH
Confidence 222344443 6667777666666666666666666555410 00
Q ss_pred -----------cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh-H
Q 046417 212 -----------RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD-K 251 (595)
Q Consensus 212 -----------~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av-g 251 (595)
.....++.++..|.+++.+.|-..+..|+|+||.|+... |
T Consensus 272 f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 272 FFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH
Confidence 001112334445555556788899999999999999765 5
No 34
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.28 E-value=3e-05 Score=86.22 Aligned_cols=198 Identities=17% Similarity=0.102 Sum_probs=141.6
Q ss_pred ChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChh------------HHHHHHHHHHHhhhhhcC-Ccc--
Q 046417 70 KSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSS------------VRSACVAATTAMSLNITK-PSF-- 134 (595)
Q Consensus 70 kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~------------VR~Ac~~aLg~LA~~l~~-~~~-- 134 (595)
+...|-.+..+||++.+.|+|.+.+-+-.+..++.++|...=+. |.+--..-+|-|...+.+ .+.
T Consensus 513 e~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie 592 (858)
T COG5215 513 ESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIE 592 (858)
T ss_pred chhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 46889999999999999999999999999999999888542111 111111112222222211 111
Q ss_pred -h-hccHHHHHHHhhcCChh-HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcc
Q 046417 135 -S-VLSKPLIELILVEQDVN-SQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGA 211 (595)
Q Consensus 135 -~-~~l~PLi~aLl~d~nk~-VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~ 211 (595)
+ ..+.-||--++...++. +.....+|+.++--...+.-..|++++.|-|.+.|+...+.+-..+++.||-++.+-+.
T Consensus 593 ~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~ 672 (858)
T COG5215 593 DVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGT 672 (858)
T ss_pred cHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhh
Confidence 1 12333333333433332 44444444444444444455679999999999999888888888999999999999999
Q ss_pred cCcCcHHhHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHh
Q 046417 212 RSKGVLDWLVPCLVEFLCCD--DWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALET 267 (595)
Q Consensus 212 ~~~~yl~~lmp~L~e~L~~d--DW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~ 267 (595)
.|.+|.+.+|..|.++|+++ +-.++-+.+-+.|-||.++|..|.+|.+.++-.|..
T Consensus 673 df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qq 730 (858)
T COG5215 673 DFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQ 730 (858)
T ss_pred hHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999999999865 555667778899999999999999999988877654
No 35
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.27 E-value=5e-05 Score=88.43 Aligned_cols=270 Identities=18% Similarity=0.201 Sum_probs=191.6
Q ss_pred hHHHHHHHHHhhhcCCCC---hHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc
Q 046417 17 NDLKQRVITCLNKLADRD---TLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL 92 (595)
Q Consensus 17 ~~lk~rvl~~L~KL~DrD---T~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I 92 (595)
..+|..+.+....|-.+| ..+.++.-|-.+|..++.+. ...+++-+.+-..++.-.||.+++..++.+.....+..
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~ 311 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD 311 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch
Confidence 468888888999997666 56778888999999887533 44444444444444457899999999999998887554
Q ss_pred hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc------------------------------chhcc----
Q 046417 93 SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS------------------------------FSVLS---- 138 (595)
Q Consensus 93 ~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~------------------------------~~~~l---- 138 (595)
+.-..+.+.+++...|+...||....+...-+...+.... +.-++
T Consensus 312 -d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~ 390 (759)
T KOG0211|consen 312 -DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASC 390 (759)
T ss_pred -hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccc
Confidence 7777888999999999999998887777655554443200 00011
Q ss_pred ---------HHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh
Q 046417 139 ---------KPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG 209 (595)
Q Consensus 139 ---------~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~ 209 (595)
-|-+..+..+.+.+|-.+.|.-......-.+. ...+..+.|-+...++.....++..+++.+..+-.+.
T Consensus 391 ~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~ 468 (759)
T KOG0211|consen 391 YPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVN 468 (759)
T ss_pred ccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhcc
Confidence 25555554455555443333322111111110 1244567777888888888888888887775555543
Q ss_pred ccc-CcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-HhHHH-HHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417 210 GAR-SKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DLATE-YKRSCLAALETRRFDKVKIVRETMNRSLEM 286 (595)
Q Consensus 210 g~~-~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~f~p-y~~~~I~~Le~crfDKVK~VRda~~~aL~~ 286 (595)
+.. ...+-+.++|.|.+.-.+..|+.|.+.++.+..+|...| ++|.+ |.+.|+.+|. |+|..||+++...+..
T Consensus 469 ~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~----d~v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 469 DVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLP----DHVYSIREAAARNLPA 544 (759)
T ss_pred CcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhh----hhHHHHHHHHHHHhHH
Confidence 322 235668899999999988899999999999999999998 66666 5678888888 8899999999999999
Q ss_pred hHhcCCC
Q 046417 287 WKEVPGV 293 (595)
Q Consensus 287 ~K~i~~~ 293 (595)
.-...|.
T Consensus 545 l~~~~G~ 551 (759)
T KOG0211|consen 545 LVETFGS 551 (759)
T ss_pred HHHHhCc
Confidence 9999883
No 36
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.23 E-value=4.5e-05 Score=88.60 Aligned_cols=221 Identities=20% Similarity=0.228 Sum_probs=151.5
Q ss_pred hHHHHHHHHHhhhcCCCChHHHHHHHHHHHHH-hCCcCcHHHHHHhhhhcCCCCChHHHHHHH--HHHHHHHHHccccch
Q 046417 17 NDLKQRVITCLNKLADRDTLPVATAELESIAR-TLTQDSFSSFLNCLQTTDSSSKSPVRKQCV--NLLTLLSRSHGDSLS 93 (595)
Q Consensus 17 ~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~-~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI--~lLG~lAEg~gd~I~ 93 (595)
.+++.-++.+|+--+. |-...|..+|-.++- +| +.-+|.+|.++.. + +.|++-+ .+..++...-.+.+.
T Consensus 856 ~e~~~~iieaf~sp~e-dvksAAs~ALGsl~vgnl-~~yLpfil~qi~s----q--pk~QyLLLhSlkevi~~~svd~~~ 927 (1233)
T KOG1824|consen 856 NELKDTIIEAFNSPSE-DVKSAASYALGSLAVGNL-PKYLPFILEQIES----Q--PKRQYLLLHSLKEVIVSASVDGLK 927 (1233)
T ss_pred hhhHHHHHHHcCCChH-HHHHHHHHHhhhhhcCch-HhHHHHHHHHHhc----c--hHhHHHHHHHHHHHHHHhccchhh
Confidence 5788877777776544 666777777777766 33 3334444444432 1 3333332 244566666678889
Q ss_pred hhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchH
Q 046417 94 PHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEV 173 (595)
Q Consensus 94 PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~ 173 (595)
|+.++||..+.+...-.+-.+|...+++||.|+-.= | ..+-|=++.++....++.-..+..|+.=.|-.-+.++.
T Consensus 928 ~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e---p--esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id 1002 (1233)
T KOG1824|consen 928 PYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE---P--ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPID 1002 (1233)
T ss_pred hhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC---h--HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccC
Confidence 999999999999999899999999999999998532 2 23445444444555555444444433333333355556
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhc------------------cCCCHHH
Q 046417 174 EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFL------------------CCDDWAT 235 (595)
Q Consensus 174 ~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L------------------~~dDW~~ 235 (595)
+|+.+-...|+++++++..+++..++.++.|+|.--...-...++.++|.|-+-- .|+-...
T Consensus 1003 ~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~ 1082 (1233)
T KOG1824|consen 1003 PLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDL 1082 (1233)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHH
Confidence 8999999999999999999999999999998885322222345666777764431 2677899
Q ss_pred HHHHHHHHHHHHHHh
Q 046417 236 RKAAAEVLGKVAVFD 250 (595)
Q Consensus 236 RkaAaEaLgsIA~av 250 (595)
||+|+|||+++-..+
T Consensus 1083 RKaaFEcmytLLdsc 1097 (1233)
T KOG1824|consen 1083 RKAAFECMYTLLDSC 1097 (1233)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998866
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.22 E-value=0.00016 Score=81.23 Aligned_cols=218 Identities=16% Similarity=0.178 Sum_probs=147.0
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCC-cCc--HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccch
Q 046417 18 DLKQRVITCLNKLADRDTLPVATAELESIARTLT-QDS--FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSLS 93 (595)
Q Consensus 18 ~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~-~~~--lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I~ 93 (595)
+|.+..|..|.. .+..--++.+|..-...-+ -+. .+.++.|+.+. +...=..++..|..+-+... +.+
T Consensus 3 ~~~~~~l~~l~~---~~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~----~~e~v~~~~~iL~~~l~~~~~~~l- 74 (503)
T PF10508_consen 3 EWINELLEELSS---KAERLEALPELKTELSSSPFLERLPEPVLFDCLNTS----NREQVELICDILKRLLSALSPDSL- 74 (503)
T ss_pred hHHHHHHHHHhc---ccchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhc----ChHHHHHHHHHHHHHHhccCHHHH-
Confidence 455555554444 3555556666666444433 122 34567777653 34444556666665555442 333
Q ss_pred hhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC-c-c--hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC
Q 046417 94 PHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP-S-F--SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP 169 (595)
Q Consensus 94 PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~-~-~--~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~ 169 (595)
++++.+++.+.|..|++.||.-|+++|++++++-... . . ..++..++..| .+.+..|...|+.+|..+.....
T Consensus 75 --~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~ 151 (503)
T PF10508_consen 75 --LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPE 151 (503)
T ss_pred --HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCch
Confidence 7799999999999999999999999999998643210 0 0 12555566666 78888899999999999886421
Q ss_pred CchHHHH-HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHH--hHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 046417 170 NPEVEQL-RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLD--WLVPCLVEFLCCDDWATRKAAAEVLGKV 246 (595)
Q Consensus 170 d~~~~~L-~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~--~lmp~L~e~L~~dDW~~RkaAaEaLgsI 246 (595)
. ....+ ..+...|..++..++-.+|--+++++..++......+ .+.. .+++.|...+.++|--++..++|+|+.+
T Consensus 152 ~-~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlnalell~~L 229 (503)
T PF10508_consen 152 G-LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA-EAVVNSGLLDLLLKELDSDDILVQLNALELLSEL 229 (503)
T ss_pred h-HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 1 11111 1237888888877555566678888888876654442 3333 3888999999999999999999999999
Q ss_pred HH
Q 046417 247 AV 248 (595)
Q Consensus 247 A~ 248 (595)
|.
T Consensus 230 a~ 231 (503)
T PF10508_consen 230 AE 231 (503)
T ss_pred Hc
Confidence 98
No 38
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.17 E-value=5.3e-05 Score=86.21 Aligned_cols=246 Identities=15% Similarity=0.187 Sum_probs=181.3
Q ss_pred ChHHHHHHHHHHHHHhCC------c--CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh-hHHHHHHHHH
Q 046417 34 DTLPVATAELESIARTLT------Q--DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP-HLSKMISTVS 104 (595)
Q Consensus 34 DT~r~A~~~LD~lA~~L~------~--~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P-hLpkIL~~Iv 104 (595)
++.-.-+.+|..|....+ | +.||.+.+.|.... -.+.+.||.++|.||.--++++.+ .+-+|.=-++
T Consensus 856 EvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrh----eKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLl 931 (1172)
T KOG0213|consen 856 EVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRH----EKVQENCIDLVGTIADRGPEYVSAREWMRICFELL 931 (1172)
T ss_pred HHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhH----HHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 366667888888888762 2 23677777776532 468889999999999999999944 5667777788
Q ss_pred hhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 046417 105 CRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLG 184 (595)
Q Consensus 105 rrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~ 184 (595)
..|+...-.+|.|+..++|-+|..+. |.. .|.-|+..| .-++.....+...|++-+-|.... -.++|.|+
T Consensus 932 elLkahkK~iRRaa~nTfG~IakaIG--Pqd-VLatLlnnL-kvqeRq~RvcTtvaIaIVaE~c~p------FtVLPalm 1001 (1172)
T KOG0213|consen 932 ELLKAHKKEIRRAAVNTFGYIAKAIG--PQD-VLATLLNNL-KVQERQNRVCTTVAIAIVAETCGP------FTVLPALM 1001 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHhcC--HHH-HHHHHHhcc-hHHHHHhchhhhhhhhhhhhhcCc------hhhhHHHH
Confidence 88999999999999999999999874 322 344444554 223333334556666666666533 24667766
Q ss_pred HhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh-HHhHHHHHHHHHH
Q 046417 185 KAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD-KDLATEYKRSCLA 263 (595)
Q Consensus 185 klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av-ge~f~py~~~~I~ 263 (595)
.--..+...+++.+|-++.=+++-.|+....|+-.+.|.|.+.|.|.|..-|--|+.++.+|+..+ |-+-..-+-..++
T Consensus 1002 neYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN 1081 (1172)
T KOG0213|consen 1002 NEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLN 1081 (1172)
T ss_pred hhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHH
Confidence 667788888999999999999998887778999999999999999999999999999999999865 2221112223444
Q ss_pred HHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417 264 ALETRRFDKVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 264 ~Le~crfDKVK~VRda~~~aL~~~K~i~~~ 293 (595)
.+=--=||-.++|-.++.++++.+...-|.
T Consensus 1082 ~iWpNIle~sPhviqa~~e~~eg~r~~Lg~ 1111 (1172)
T KOG0213|consen 1082 LIWPNILETSPHVIQAFDEAMEGLRVALGP 1111 (1172)
T ss_pred HhhhhhcCCChHHHHHHHHHHHHHHHHhch
Confidence 444445677889988888888887765543
No 39
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.13 E-value=0.00017 Score=78.89 Aligned_cols=209 Identities=17% Similarity=0.203 Sum_probs=158.7
Q ss_pred ChhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcC-CCCChHHHHHHHHHHHHHHHHccccc
Q 046417 15 STNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDS-FSSFLNCLQTTD-SSSKSPVRKQCVNLLTLLSRSHGDSL 92 (595)
Q Consensus 15 ~~~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~-ss~kp~vRKaaI~lLG~lAEg~gd~I 92 (595)
..+++.++++.....-.|..++..+++.|-.+++.++.+. +..+|..+.... ....+..|..++..+.-++.|--=.-
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 5567888999888888887788889999999999997655 888888887766 45567899999999977777764333
Q ss_pred hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC----C-----------cc-hhccHHHHHHHhhcCChhHHHH
Q 046417 93 SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK----P-----------SF-SVLSKPLIELILVEQDVNSQVG 156 (595)
Q Consensus 93 ~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~----~-----------~~-~~~l~PLi~aLl~d~nk~VQ~~ 156 (595)
.|.-.+++..++..|.| +.+...++.+++.+.....+ . .+ ...+++|++.. .+.+...+..
T Consensus 266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~-~~~~~~~k~~ 342 (415)
T PF12460_consen 266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGF-KEADDEIKSN 342 (415)
T ss_pred CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHH-hhcChhhHHH
Confidence 45666778888888877 66888888898888865311 1 11 12455555555 3333335556
Q ss_pred HHHHHHHHHhcCCCch-HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHH
Q 046417 157 GAMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVE 226 (595)
Q Consensus 157 AA~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e 226 (595)
--.||..++.+.+..+ .+++++|+|-+++.|+.++..++.+.|.++-.+..-......+|+..++|.|..
T Consensus 343 yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 343 YLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 6778999999988666 689999999999999999888888888888888875555567889999998875
No 40
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.10 E-value=2.3e-05 Score=65.84 Aligned_cols=88 Identities=24% Similarity=0.240 Sum_probs=67.7
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF 134 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~ 134 (595)
|+.++..|.. +.++.+|..++.+||.+ .-++.++.++..++|+++.||.+++++||.+...
T Consensus 1 i~~L~~~l~~---~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~------ 61 (88)
T PF13646_consen 1 IPALLQLLQN---DPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIGDP------ 61 (88)
T ss_dssp HHHHHHHHHT---SSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHH------
T ss_pred CHHHHHHHhc---CCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH------
Confidence 4566666643 46799999999999922 1237788999999999999999999999998742
Q ss_pred hhccHHHHHHHhhcCChhHHHHHHHHHH
Q 046417 135 SVLSKPLIELILVEQDVNSQVGGAMCLA 162 (595)
Q Consensus 135 ~~~l~PLi~aLl~d~nk~VQ~~AA~cLa 162 (595)
..+..|...|..+.+..++..|+.+|+
T Consensus 62 -~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 -EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 256677888855667778888888774
No 41
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.09 E-value=0.00034 Score=81.63 Aligned_cols=248 Identities=17% Similarity=0.226 Sum_probs=183.4
Q ss_pred HHHHHHHHHHhCCc--------CcHHHHHHhhhhcCCC--CChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhcc
Q 046417 39 ATAELESIARTLTQ--------DSFSSFLNCLQTTDSS--SKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLR 108 (595)
Q Consensus 39 A~~~LD~lA~~L~~--------~~lp~fL~~L~d~~ss--~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLk 108 (595)
+.=.|.....+++| ..++.|++.+.+++.. +...+|=+++-.++.+-.-+|+.+-++=..|+-+++..|.
T Consensus 105 ssi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~ 184 (1233)
T KOG1824|consen 105 SSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQ 184 (1233)
T ss_pred HHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhccc
Confidence 44445555666653 4588899999888654 3457999999999999999999999988899999999999
Q ss_pred CCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh---cCChhHH-HHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 046417 109 DPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV---EQDVNSQ-VGGAMCLAAAIDAAPNPEVEQLRKLLPRLG 184 (595)
Q Consensus 109 D~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~---d~nk~VQ-~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~ 184 (595)
-+...||.=++.+||.++..+.+. .+.-+++.|+. ...+..+ -.-.-||++++-.++.....++.+++|-+.
T Consensus 185 s~R~aVrKkai~~l~~la~~~~~~----ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~ 260 (1233)
T KOG1824|consen 185 SPRLAVRKKAITALGHLASSCNRD----LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVA 260 (1233)
T ss_pred ChHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHH
Confidence 999999999999999999988532 33445555543 2222222 345667888888888777778899999999
Q ss_pred Hhh---ccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc----------------------CC--------
Q 046417 185 KAV---RIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC----------------------CD-------- 231 (595)
Q Consensus 185 klL---~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~----------------------~d-------- 231 (595)
.+. +.+.-..+...|.+++++..-......||.+.++..+.++++ |+
T Consensus 261 ~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsD 340 (1233)
T KOG1824|consen 261 DYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSD 340 (1233)
T ss_pred HHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhcccccc
Confidence 888 667778999999999999886666667888888888888762 00
Q ss_pred ----CHHHHHHHHHHHHHHHHHhHHhHHHHH----HHHHHHHHhccCCchHHHHHHHHHH-HHHhHhcCCCC
Q 046417 232 ----DWATRKAAAEVLGKVAVFDKDLATEYK----RSCLAALETRRFDKVKIVRETMNRS-LEMWKEVPGVC 294 (595)
Q Consensus 232 ----DW~~RkaAaEaLgsIA~avge~f~py~----~~~I~~Le~crfDKVK~VRda~~~a-L~~~K~i~~~~ 294 (595)
.|-+|.+|+-||.++-..-.+.+..+. +..|.-|. |+---|+--+.++ ++++++++..-
T Consensus 341 DeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~Rfk----EREEnVk~dvf~~yi~ll~qt~~~~ 408 (1233)
T KOG1824|consen 341 DEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFK----EREENVKADVFHAYIALLKQTRPVI 408 (1233)
T ss_pred ccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHH----HHhhhHHHHHHHHHHHHHHcCCCCc
Confidence 399999999999998775555444443 44444454 4456666555554 57778776553
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.97 E-value=2.1e-05 Score=68.54 Aligned_cols=109 Identities=14% Similarity=0.179 Sum_probs=83.5
Q ss_pred CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH-HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC
Q 046417 53 DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS-KMISTVSCRLRDPDSSVRSACVAATTAMSLNITK 131 (595)
Q Consensus 53 ~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp-kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~ 131 (595)
..++.++..+.+. ++..|+.++.+|+.++....+.....+. .+++.+++.|.|+++.|+..|+++|+.|+.....
T Consensus 7 ~~i~~l~~~l~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 7 GGLPALVSLLSSS----DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred CChHHHHHHHHcC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 3578888888753 4899999999999999876555544555 8899999999999999999999999999975421
Q ss_pred Ccc--h-h-ccHHHHHHHhhcCChhHHHHHHHHHHHHHh
Q 046417 132 PSF--S-V-LSKPLIELILVEQDVNSQVGGAMCLAAAID 166 (595)
Q Consensus 132 ~~~--~-~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE 166 (595)
... . . +++-|+..| .+.+..++..|+.+|..++|
T Consensus 83 ~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 111 1 1 455666666 66678899999999988764
No 43
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.97 E-value=0.00038 Score=81.84 Aligned_cols=201 Identities=18% Similarity=0.182 Sum_probs=161.3
Q ss_pred CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC
Q 046417 53 DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK 131 (595)
Q Consensus 53 ~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~ 131 (595)
+.++-+-..+.....+.+|..|++++..|..+.+.-. +....+...+...+--+++|.+..|..-++..|..||.-+-.
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 3366666677777788899999999999999888887 677888888888888999999999999898899999977643
Q ss_pred C--cch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 046417 132 P--SFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRV 208 (595)
Q Consensus 132 ~--~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a 208 (595)
. ++. ..++.|++.+ ++....+-..+--|+.++++.. -|.++.+-++.++++.+-++|..+...+.-....
T Consensus 329 ~~~~~~~~v~p~lld~l-kekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~ 401 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRL-KEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRK 401 (815)
T ss_pred hhHHHHHhhcchHHHHh-hhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhh
Confidence 2 222 2777888888 6778888888888889988832 5678888889999999999998877777666654
Q ss_pred hc-c-cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH-hHHHHHHH
Q 046417 209 GG-A-RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD-LATEYKRS 260 (595)
Q Consensus 209 ~g-~-~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge-~f~py~~~ 260 (595)
.+ . .+..-+..++|.+.....|.+=.+|++|.++++.|..++|+ .|..|...
T Consensus 402 ~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~ 456 (815)
T KOG1820|consen 402 LGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKD 456 (815)
T ss_pred cCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 44 2 24566788999999999999999999999999999999995 66655543
No 44
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.00093 Score=78.50 Aligned_cols=209 Identities=12% Similarity=0.099 Sum_probs=142.2
Q ss_pred HHHHHHHHHHhCCcCcHHHHHHhhhhcC--------CCCChHHHHHHHHHHHHHHHHccc--cchhhHHHH-HHHHHhhc
Q 046417 39 ATAELESIARTLTQDSFSSFLNCLQTTD--------SSSKSPVRKQCVNLLTLLSRSHGD--SLSPHLSKM-ISTVSCRL 107 (595)
Q Consensus 39 A~~~LD~lA~~L~~~~lp~fL~~L~d~~--------ss~kp~vRKaaI~lLG~lAEg~gd--~I~PhLpkI-L~~IvrrL 107 (595)
|+.-|-.++..=..+.++.+|+.+.+.+ ...+++.+..|++.+|.+++.-.+ .....|..+ +++|...+
T Consensus 392 a~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f 471 (1010)
T KOG1991|consen 392 ALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEF 471 (1010)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhh
Confidence 3344455666655666776666655543 234578999999999999987752 224667766 67888999
Q ss_pred cCCChhHHHHHHHHHHHhhhh-hcCCcc-hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCC---chHHHHHHHHHH
Q 046417 108 RDPDSSVRSACVAATTAMSLN-ITKPSF-SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPN---PEVEQLRKLLPR 182 (595)
Q Consensus 108 kD~ds~VR~Ac~~aLg~LA~~-l~~~~~-~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d---~~~~~L~~Ll~r 182 (595)
++|--..|.-+||.++++++. ..++.. ...+.-....|.++++-.|++-||.||..+|.+... .+-+.++.+|..
T Consensus 472 ~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~ 551 (1010)
T KOG1991|consen 472 QSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQE 551 (1010)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHH
Confidence 999999999999999999943 433221 125666667776678888999999999999999543 356888999999
Q ss_pred HHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhc----c------CCCHHHHHHHHHHHHHHHHHh
Q 046417 183 LGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFL----C------CDDWATRKAAAEVLGKVAVFD 250 (595)
Q Consensus 183 L~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L----~------~dDW~~RkaAaEaLgsIA~av 250 (595)
|+++.+.-.-. .+-.++-+++.--++...||...++..|.+.. . +.+-..-.+|.-+|.+|-+.+
T Consensus 552 lL~L~ne~End---~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til 626 (1010)
T KOG1991|consen 552 LLKLSNEVEND---DLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTIL 626 (1010)
T ss_pred HHHHHHhcchh---HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHH
Confidence 99998543322 23345555554333444677777777776542 2 123344566777777776644
No 45
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.00031 Score=79.47 Aligned_cols=216 Identities=21% Similarity=0.172 Sum_probs=142.3
Q ss_pred HHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHH-HHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC--c
Q 046417 57 SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSK-MISTVSCRLRDPDSSVRSACVAATTAMSLNITKP--S 133 (595)
Q Consensus 57 ~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpk-IL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~--~ 133 (595)
....+|.....+.++.+|.+|+..|=.+.||+. |++ +....++.++|.+..||.|++..+.-++..+.-+ .
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhccccc------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 455556666677788999999998888888553 222 3566778888999999999987777776555211 0
Q ss_pred c------h-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHH-H--------------------------
Q 046417 134 F------S-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRK-L-------------------------- 179 (595)
Q Consensus 134 ~------~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~-L-------------------------- 179 (595)
+ . ..|.-+..++ .|-.-.|-.-||-+|-.+.....+.+...|.+ +
T Consensus 272 e~~e~kl~D~aF~~vC~~v-~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsG 350 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAV-RDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSG 350 (823)
T ss_pred hhhhhhhHHHHHHHHHHHH-hcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccC
Confidence 0 0 1344455555 33332232333333333322222222223321 3
Q ss_pred ------------------------HHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHH
Q 046417 180 ------------------------LPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWAT 235 (595)
Q Consensus 180 ------------------------l~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~ 235 (595)
|..|+.-|+++.+.+|.+++..++++|.. .+.+....+..|.+.+.|+.-.+
T Consensus 351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s----sP~FA~~aldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS----SPGFAVRALDFLVDMFNDEIEVV 426 (823)
T ss_pred ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC----CCCcHHHHHHHHHHHhccHHHHH
Confidence 34445555667788999999999998843 45667888999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417 236 RKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWK 288 (595)
Q Consensus 236 RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K 288 (595)
|.-|+-+|-.|+... ..=..+.+.++..|+ |...-||+++.+.|...+
T Consensus 427 RL~ai~aL~~Is~~l-~i~eeql~~il~~L~----D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 427 RLKAIFALTMISVHL-AIREEQLRQILESLE----DRSVDVREALRELLKNAR 474 (823)
T ss_pred HHHHHHHHHHHHHHh-eecHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcC
Confidence 999999999999873 333445667777788 778888888887776543
No 46
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.86 E-value=0.00079 Score=70.68 Aligned_cols=200 Identities=25% Similarity=0.264 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHH
Q 046417 39 ATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSAC 118 (595)
Q Consensus 39 A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac 118 (595)
...+++.......+..+..++..+.+ .++.+|..+...+|.+.. ...++.+.+.|.|.++.||..+
T Consensus 29 ~l~~~~~~~~~~~~~~~~~~~~~l~~----~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a 94 (335)
T COG1413 29 ALAELDDLILELAPEAADELLKLLED----EDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAA 94 (335)
T ss_pred HHhccchhhcccchhhHHHHHHHHcC----CCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHH
Confidence 34444444443322345555555554 468899998888655542 3677889999999999999999
Q ss_pred HHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc-------
Q 046417 119 VAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG------- 191 (595)
Q Consensus 119 ~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~------- 191 (595)
+++||.+.... .+.+|+..|..+.+..|...|+.+|..+.+... +..++.+++++.
T Consensus 95 ~~aLg~~~~~~-------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~ 157 (335)
T COG1413 95 ADALGELGDPE-------AVPPLVELLENDENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAA 157 (335)
T ss_pred HHHHHccCChh-------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhh
Confidence 99988887533 467888888547888999999999888776421 222222222222
Q ss_pred -----hhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 046417 192 -----FKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALE 266 (595)
Q Consensus 192 -----~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le 266 (595)
..++.+++.+++.+- .+...+.|++.+.+.++.+|.+|+.+|+.+.... ......+...++
T Consensus 158 ~~~~~~~~r~~a~~~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~ 223 (335)
T COG1413 158 LDAALLDVRAAAAEALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLVKALS 223 (335)
T ss_pred ccchHHHHHHHHHHHHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHHHHhc
Confidence 123333333322111 2345677888888888888888888888886543 101112222333
Q ss_pred hccCCchHHHHHHHHHHHHHh
Q 046417 267 TRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 267 ~crfDKVK~VRda~~~aL~~~ 287 (595)
|---.||-.+..+|...
T Consensus 224 ----~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 224 ----DESLEVRKAALLALGEI 240 (335)
T ss_pred ----CCCHHHHHHHHHHhccc
Confidence 66677777766665443
No 47
>PTZ00429 beta-adaptin; Provisional
Probab=97.85 E-value=0.0062 Score=71.55 Aligned_cols=242 Identities=11% Similarity=0.055 Sum_probs=137.3
Q ss_pred HHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHH
Q 046417 42 ELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAA 121 (595)
Q Consensus 42 ~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~a 121 (595)
+|..|+..-.++.++.++..|.....+.+|+|||.|+.++.-+-...++.+.. ..+++.+...|.|+++.|...|+-+
T Consensus 125 ALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~~~~~L~~LL~D~dp~Vv~nAl~a 202 (746)
T PTZ00429 125 AVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QDFKKDLVELLNDNNPVVASNAAAI 202 (746)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cchHHHHHHHhcCCCccHHHHHHHH
Confidence 34455554456668888888888888888999999999999998888875421 1244455566899999998888888
Q ss_pred HHHhhhhhcC--------------------C--------------cc-h----hccHHHHHHHhhcCChhHHHHHHHHHH
Q 046417 122 TTAMSLNITK--------------------P--------------SF-S----VLSKPLIELILVEQDVNSQVGGAMCLA 162 (595)
Q Consensus 122 Lg~LA~~l~~--------------------~--------------~~-~----~~l~PLi~aLl~d~nk~VQ~~AA~cLa 162 (595)
|-.+.....+ + |. . .++.-+...| ...|..|.-.|+-++-
T Consensus 203 L~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~L-q~~N~AVVl~Aik~il 281 (746)
T PTZ00429 203 VCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRM-SHQNPAVVMGAIKVVA 281 (746)
T ss_pred HHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHH
Confidence 7777543110 0 00 0 0111122222 3456666666666655
Q ss_pred HHHhcCCCch-HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccC----------------------------
Q 046417 163 AAIDAAPNPE-VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS---------------------------- 213 (595)
Q Consensus 163 aviE~a~d~~-~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~---------------------------- 213 (595)
.+........ ..++.+|..-++.++ +....+|-.+|..|..++......|
T Consensus 282 ~l~~~~~~~~~~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~L 360 (746)
T PTZ00429 282 NLASRCSQELIERCTVRVNTALLTLS-RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKL 360 (746)
T ss_pred HhcCcCCHHHHHHHHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHH
Confidence 5443221111 122223334344443 3334455555555555544221111
Q ss_pred --cCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417 214 --KGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 214 --~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~ 291 (595)
..-+..++.-|.+|..+.|-..+..++.+||.+|.-+... ...|+.+|-..--+++..|.+++...-.+++..|
T Consensus 361 ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~----a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP 436 (746)
T PTZ00429 361 VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV----APDCANLLLQIVDRRPELLPQVVTAAKDIVRKYP 436 (746)
T ss_pred cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCc
Confidence 1122445666777777888889999999999998765443 3344444433333455555554443333334333
No 48
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.82 E-value=0.00083 Score=65.19 Aligned_cols=115 Identities=18% Similarity=0.240 Sum_probs=84.3
Q ss_pred ChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhh-hcCCcchhccHHHHHHHhhc
Q 046417 70 KSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLN-ITKPSFSVLSKPLIELILVE 148 (595)
Q Consensus 70 kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~-l~~~~~~~~l~PLi~aLl~d 148 (595)
+|.+|-.++.++|.++--|+..+-||++ .+...|+|+++.||..|.-.|..|... +.+. -..++.-++..| .|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~----~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~-k~~l~~~~l~~l-~D 74 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLP----NLYKCLRDEDPLVRKTALLVLSHLILEDMIKV-KGQLFSRILKLL-VD 74 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHH----HHHHHHCCCCHHHHHHHHHHHHHHHHcCceee-hhhhhHHHHHHH-cC
Confidence 4789999999999999999988777766 667899999999999999999888753 2211 112334455555 79
Q ss_pred CChhHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHhhccC
Q 046417 149 QDVNSQVGGAMCLAAAIDA-APNPEVEQLRKLLPRLGKAVRIE 190 (595)
Q Consensus 149 ~nk~VQ~~AA~cLaaviE~-a~d~~~~~L~~Ll~rL~klL~~~ 190 (595)
.|+.|+..|..+|..+... -+..+...+.+++.+|-....++
T Consensus 75 ~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~ 117 (178)
T PF12717_consen 75 ENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHP 117 (178)
T ss_pred CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccc
Confidence 9999999999999998876 34434455555555555544433
No 49
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.81 E-value=0.0028 Score=67.10 Aligned_cols=195 Identities=16% Similarity=0.207 Sum_probs=133.3
Q ss_pred hhHHHHHHHHHhhhcCCCC--hHHHHHHHHHHHH-HhCCcCc----HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc
Q 046417 16 TNDLKQRVITCLNKLADRD--TLPVATAELESIA-RTLTQDS----FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH 88 (595)
Q Consensus 16 ~~~lk~rvl~~L~KL~DrD--T~r~A~~~LD~lA-~~L~~~~----lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~ 88 (595)
.+.+-.++.++++.|.|+- |+.-|++.|-.+- .++-++. ...++..+.......++..+.-+++++++++=..
T Consensus 38 ~~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl 117 (309)
T PF05004_consen 38 QEDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL 117 (309)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc
Confidence 3567777889999998766 6667777775543 3443333 3455666655555555677778888899998875
Q ss_pred c--ccchhhHHHHHHHHHhhccCCCh--hHHHHHHHHHHHhhhhhcCCcchh-ccHHHHHHHhh------cC--------
Q 046417 89 G--DSLSPHLSKMISTVSCRLRDPDS--SVRSACVAATTAMSLNITKPSFSV-LSKPLIELILV------EQ-------- 149 (595)
Q Consensus 89 g--d~I~PhLpkIL~~IvrrLkD~ds--~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~aLl~------d~-------- 149 (595)
| +..-..+..+.|.+.+.++|... .+|.+|+.+||.++-..+..+... -+..+++.++. +.
T Consensus 118 g~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 118 GAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred CCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCC
Confidence 4 66667788889999999999764 479999999999887765433221 12234443321 11
Q ss_pred -ChhHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc
Q 046417 150 -DVNSQVGGAMCLAAAIDAAPNP-EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG 210 (595)
Q Consensus 150 -nk~VQ~~AA~cLaaviE~a~d~-~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g 210 (595)
++.+..+|..|-+-++-..+.. +..++...+|+|..+|++++..+|-++=.+|+-++..+.
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 2346666666654444434331 346778899999999999999999999999998887654
No 50
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.79 E-value=0.0028 Score=66.51 Aligned_cols=169 Identities=21% Similarity=0.209 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCC-----
Q 046417 37 PVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPD----- 111 (595)
Q Consensus 37 r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~d----- 111 (595)
.+--...+.++..-++..+++++.++.. +.++.+|..+..+||.+-.... +.-++..++|..
T Consensus 89 ~vr~~a~~aLg~~~~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~ 155 (335)
T COG1413 89 RVRDAAADALGELGDPEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAA 155 (335)
T ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhh
Confidence 3444444455555556779999999986 4679999999999988876554 223334444433
Q ss_pred -------hhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 046417 112 -------SSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLG 184 (595)
Q Consensus 112 -------s~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~ 184 (595)
..||.++..+++.+...- ...+|.+.+ .+.++.|+..|+.+|..+.... ..+.+.|.
T Consensus 156 ~~~~~~~~~~r~~a~~~l~~~~~~~-------~~~~l~~~l-~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~ 219 (335)
T COG1413 156 AALDAALLDVRAAAAEALGELGDPE-------AIPLLIELL-EDEDADVRRAAASALGQLGSEN--------VEAADLLV 219 (335)
T ss_pred hhccchHHHHHHHHHHHHHHcCChh-------hhHHHHHHH-hCchHHHHHHHHHHHHHhhcch--------hhHHHHHH
Confidence 258888888888777633 456677777 6777789999999888877643 56778888
Q ss_pred HhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHH
Q 046417 185 KAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLG 244 (595)
Q Consensus 185 klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLg 244 (595)
+++.++...++...+.++|-+- ....++.+...+.+.+|.++..+..+++
T Consensus 220 ~~~~~~~~~vr~~~~~~l~~~~----------~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 220 KALSDESLEVRKAALLALGEIG----------DEEAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred HHhcCCCHHHHHHHHHHhcccC----------cchhHHHHHHHHhccchHHHHHHHHHhc
Confidence 8998888887766655555211 2345566777777777777777766665
No 51
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0083 Score=71.94 Aligned_cols=270 Identities=16% Similarity=0.170 Sum_probs=179.2
Q ss_pred HHHHHHHHHhhhc-CCCC---hHHHHHHHHHH---HHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHH--c
Q 046417 18 DLKQRVITCLNKL-ADRD---TLPVATAELES---IARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRS--H 88 (595)
Q Consensus 18 ~lk~rvl~~L~KL-~DrD---T~r~A~~~LD~---lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg--~ 88 (595)
++-..+...+..+ +|-| -....+..||. +|...+.+.+..++.......++..+.++|-+.++|+.+.++ +
T Consensus 608 dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~ 687 (1176)
T KOG1248|consen 608 DVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSG 687 (1176)
T ss_pred HHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCch
Confidence 4444444555555 3443 22334455554 455555666777776666666666789999999999999999 4
Q ss_pred cccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh--cCChhHHHHHHHHHHHHH-
Q 046417 89 GDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV--EQDVNSQVGGAMCLAAAI- 165 (595)
Q Consensus 89 gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~--d~nk~VQ~~AA~cLaavi- 165 (595)
.-++..|+..|...+...+++....+|...+.+|-.|-+.+.......+.+-+.++++. +.|......|.-||.-++
T Consensus 688 ~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~ 767 (1176)
T KOG1248|consen 688 EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGA 767 (1176)
T ss_pred hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHH
Confidence 46668889999999999999988889888888888887766311111233444555543 445555566777766665
Q ss_pred -hc----CCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH-hhcccCcCcHHhHHHHHHHhccCCCHHHHHHH
Q 046417 166 -DA----APNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR-VGGARSKGVLDWLVPCLVEFLCCDDWATRKAA 239 (595)
Q Consensus 166 -E~----a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~-a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaA 239 (595)
.. ..++....+++++.-|...|-.......+.-|-+++.++. -.+....+++..++..+.-+|.+..-..|++|
T Consensus 768 i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaA 847 (1176)
T KOG1248|consen 768 IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAA 847 (1176)
T ss_pred HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33 2233245777777777777655555555444667777765 33444578889999999999999999999999
Q ss_pred HHHHHHHHHHhH-HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417 240 AEVLGKVAVFDK-DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 240 aEaLgsIA~avg-e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~ 287 (595)
+..|..+..... ..+.+|.+.+|..+-..-.|+-..||-.+-.=|+.+
T Consensus 848 I~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 848 IGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred HHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 998888877765 477777776666655555575555555544444333
No 52
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.69 E-value=0.00019 Score=62.46 Aligned_cols=110 Identities=22% Similarity=0.146 Sum_probs=82.8
Q ss_pred ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcC
Q 046417 137 LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKG 215 (595)
Q Consensus 137 ~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~ 215 (595)
.+++|++.| .+.+..+...|+.||..+....++....++. .+++.|.++|++++..++..++.+++.++.........
T Consensus 8 ~i~~l~~~l-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLL-SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred ChHHHHHHH-HcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 456667766 5667778888888888888764333334555 68899999999988899999999999988644322111
Q ss_pred cH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 046417 216 VL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVA 247 (595)
Q Consensus 216 yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA 247 (595)
+. ..+++.|.+++.+.+..+|..|+.+|..|+
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22 237899999999999999999999999875
No 53
>PTZ00429 beta-adaptin; Provisional
Probab=97.67 E-value=0.0011 Score=77.82 Aligned_cols=133 Identities=11% Similarity=0.058 Sum_probs=99.0
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHH
Q 046417 65 TDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIE 143 (595)
Q Consensus 65 ~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~ 143 (595)
..++.+...||=+.+.+...++..+|.+ --.+.++.+-++|+++.||.-+..+|+.+-..- .. .++.|+..
T Consensus 76 ~~~S~d~elKKLvYLYL~~ya~~~pela----lLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~----i~e~l~~~lkk 147 (746)
T PTZ00429 76 LAPSTDLELKKLVYLYVLSTARLQPEKA----LLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS----VLEYTLEPLRR 147 (746)
T ss_pred HhCCCCHHHHHHHHHHHHHHcccChHHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH----HHHHHHHHHHH
Confidence 4556789999999999999988877632 234678899999999999999999888765421 11 25566666
Q ss_pred HHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 046417 144 LILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRV 208 (595)
Q Consensus 144 aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a 208 (595)
+| .|.+++|-..||+|+.++....++.+ .-..+.++|.++|.+.+..+...++.++-.|...
T Consensus 148 ~L-~D~~pYVRKtAalai~Kly~~~pelv--~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 148 AV-ADPDPYVRKTAAMGLGKLFHDDMQLF--YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred Hh-cCCCHHHHHHHHHHHHHHHhhCcccc--cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 66 78999999999999999987655422 1224667777889888888877777766666543
No 54
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.65 E-value=0.0021 Score=72.45 Aligned_cols=208 Identities=13% Similarity=0.122 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHccccchh-hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHH
Q 046417 76 QCVNLLTLLSRSHGDSLSP-HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQ 154 (595)
Q Consensus 76 aaI~lLG~lAEg~gd~I~P-hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ 154 (595)
..|.++|.||.-.++++.+ .+-+|.=-++..|+.-+-.+|.++..++|.+++.+. |. ..+.-|+..| .-++....
T Consensus 707 nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG--Pq-dvL~~LlnnL-kvqeRq~R 782 (975)
T COG5181 707 NTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG--PQ-DVLDILLNNL-KVQERQQR 782 (975)
T ss_pred hHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC--HH-HHHHHHHhcc-hHHHHHhh
Confidence 4455555555555555533 233444444555555555666666666666666552 21 1233333333 12333333
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHH
Q 046417 155 VGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWA 234 (595)
Q Consensus 155 ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~ 234 (595)
.+.+.|++-+-|..+. -.++|.|+.=-..|...+++.+|-++.=+++-.|.....|+-.+.|.|.+.|+|.|-.
T Consensus 783 vctsvaI~iVae~cgp------fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~v 856 (975)
T COG5181 783 VCTSVAISIVAEYCGP------FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPV 856 (975)
T ss_pred hhhhhhhhhhHhhcCc------hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchH
Confidence 3444444444444322 2456666666678888899999999998888777777899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-HHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417 235 TRKAAAEVLGKVAVFD-KDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 235 ~RkaAaEaLgsIA~av-ge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~ 293 (595)
-|--|...+-+|+..+ |-+...-+=..++.|=--=||-.++|-.++-|.++.+...-|.
T Consensus 857 hRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 857 HRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc
Confidence 9999999999998865 3222222223455555556788899999999999998887755
No 55
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.64 E-value=0.0019 Score=71.05 Aligned_cols=104 Identities=14% Similarity=0.063 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHH
Q 046417 39 ATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSAC 118 (595)
Q Consensus 39 A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac 118 (595)
.....+.|+..-++...+.++..|. +.+|.+|..++.++|..- .+ -.+.+++.|+|+++.||.++
T Consensus 103 r~aaa~ALg~i~~~~a~~~L~~~L~----~~~p~vR~aal~al~~r~---~~--------~~~~L~~~L~d~d~~Vra~A 167 (410)
T TIGR02270 103 CAGIQAALGWLGGRQAEPWLEPLLA----ASEPPGRAIGLAALGAHR---HD--------PGPALEAALTHEDALVRAAA 167 (410)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHhc----CCChHHHHHHHHHHHhhc---cC--------hHHHHHHHhcCCCHHHHHHH
Confidence 3344444444333444556555553 346778887777666611 11 13356667789999999999
Q ss_pred HHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046417 119 VAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAI 165 (595)
Q Consensus 119 ~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaavi 165 (595)
+.+||.+...- .+.+|..++ .+.++.|..+|+.+|..+.
T Consensus 168 ~raLG~l~~~~-------a~~~L~~al-~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 168 LRALGELPRRL-------SESTLRLYL-RDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred HHHHHhhcccc-------chHHHHHHH-cCCCHHHHHHHHHHHHHcC
Confidence 99988887522 345566555 7888999988888876553
No 56
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.64 E-value=0.0025 Score=74.56 Aligned_cols=229 Identities=17% Similarity=0.099 Sum_probs=167.7
Q ss_pred CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc--ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc
Q 046417 53 DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG--DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT 130 (595)
Q Consensus 53 ~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g--d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~ 130 (595)
..+..+++.+........+.+|-..+.-+ -..+... -.+..+-...+|.|+..-.|....||.|..+.+.+++....
T Consensus 433 ~ti~~llp~~~~~l~de~~~V~lnli~~l-s~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~ 511 (759)
T KOG0211|consen 433 RTISELLPLLIGNLKDEDPIVRLNLIDKL-SLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG 511 (759)
T ss_pred cCccccChhhhhhcchhhHHHHHhhHHHH-HHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh
Confidence 33666666666555566789999988655 3344444 44466777889999999989888999999999999998764
Q ss_pred CCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc
Q 046417 131 KPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG 210 (595)
Q Consensus 131 ~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g 210 (595)
..-+...+.+|...=+.+..-.++.+|+.+|.++++.-+. .-+-+.+.++++....++++..|.+.+.+|..+|.+.|
T Consensus 512 ~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g 589 (759)
T KOG0211|consen 512 VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG 589 (759)
T ss_pred hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc
Confidence 1111112333333322344455889999999999998652 12667899999999999999999999999999999887
Q ss_pred ccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417 211 ARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKE 289 (595)
Q Consensus 211 ~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~ 289 (595)
.. -+-+.++|.+.++..|..=.+|.-++..|..+...+- ..... .+.+.++...-|-=.-||-.+..|++....
T Consensus 590 ~e--i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~---~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 590 QE--ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDE---EVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred cH--HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHH---HHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 65 4557889999999999988999999999999977663 23333 333445555557777888888888877765
No 57
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.50 E-value=0.005 Score=67.80 Aligned_cols=207 Identities=13% Similarity=0.123 Sum_probs=135.0
Q ss_pred HHHhCCcCc---HHHHHHhhhhcCCCCChHHHHHHHH-HHHHHHHHccccchhhHHHHHHHHHhhccC-CChhHHHHHHH
Q 046417 46 IARTLTQDS---FSSFLNCLQTTDSSSKSPVRKQCVN-LLTLLSRSHGDSLSPHLSKMISTVSCRLRD-PDSSVRSACVA 120 (595)
Q Consensus 46 lA~~L~~~~---lp~fL~~L~d~~ss~kp~vRKaaI~-lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD-~ds~VR~Ac~~ 120 (595)
...+++++. .+.....|.+...+.+...|+.++. ++++++++---.=-.|..+|+-.++.-|.| .+...+.-|..
T Consensus 273 ~~~~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLr 352 (516)
T KOG2956|consen 273 SMDQLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALR 352 (516)
T ss_pred chhhCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 334444433 5566666666555567789999998 888888875433355899999999999999 56777888888
Q ss_pred HHHHhhhhhc----CCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHH
Q 046417 121 ATTAMSLNIT----KPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKA 196 (595)
Q Consensus 121 aLg~LA~~l~----~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~ 196 (595)
.|+.|...=. +..++++++ ++++- .+..+.|-..|+-|.-..+-. ..+...+.-|+|.|+. ...+.-.
T Consensus 353 vL~~ml~~Q~~~l~DstE~ai~K-~Leaa-~ds~~~v~~~Aeed~~~~las--~~P~~~I~~i~~~Ilt----~D~~~~~ 424 (516)
T KOG2956|consen 353 VLREMLTNQPARLFDSTEIAICK-VLEAA-KDSQDEVMRVAEEDCLTTLAS--HLPLQCIVNISPLILT----ADEPRAV 424 (516)
T ss_pred HHHHHHHhchHhhhchHHHHHHH-HHHHH-hCCchhHHHHHHHHHHHHHHh--hCchhHHHHHhhHHhc----CcchHHH
Confidence 8887775432 111222333 33333 233333333333332222221 1122344456666554 4444445
Q ss_pred HHHHHHHHHHHhh-cccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-HhHHHHHHH
Q 046417 197 AVLGVIGSVVRVG-GARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DLATEYKRS 260 (595)
Q Consensus 197 alLsAIgSlA~a~-g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~f~py~~~ 260 (595)
++|-.+--+++-. .+.....++.++|++++...+..-.+||.|.=||-+|...+| +.|.||...
T Consensus 425 ~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~ 490 (516)
T KOG2956|consen 425 AVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQ 490 (516)
T ss_pred HHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhh
Confidence 6666777777632 333467789999999999999999999999999999999999 899998754
No 58
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.49 E-value=0.0057 Score=66.98 Aligned_cols=219 Identities=18% Similarity=0.198 Sum_probs=145.1
Q ss_pred HHHHHHhCCcCc----HHHHHHhhhhc-CCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc-cCCChhHHH
Q 046417 43 LESIARTLTQDS----FSSFLNCLQTT-DSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL-RDPDSSVRS 116 (595)
Q Consensus 43 LD~lA~~L~~~~----lp~fL~~L~d~-~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL-kD~ds~VR~ 116 (595)
+-.+...++++. ...++..+... ....++..|..+..+++.++.-+++.- .+..++..+...+ ...++..|.
T Consensus 171 ~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~ 248 (415)
T PF12460_consen 171 FSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRP 248 (415)
T ss_pred HHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhH
Confidence 334445555433 22344444333 233458999999999999999874221 4555555555555 444555666
Q ss_pred HHHHHHHHhhhhhc-CC-cch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc-------hH------HHHHHHH
Q 046417 117 ACVAATTAMSLNIT-KP-SFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP-------EV------EQLRKLL 180 (595)
Q Consensus 117 Ac~~aLg~LA~~l~-~~-~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~-------~~------~~L~~Ll 180 (595)
.+...+.-++.-+. +. +.. .++.-|++.| .+ +.+-..||-++.-++...++. .+ -++..++
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL-~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~ 325 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPLATELLDKLLELL-SS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVL 325 (415)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh-CC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHH
Confidence 66666555554332 21 222 3666677766 33 555666777777766542111 11 1444678
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHHhh-cccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 046417 181 PRLGKAVRIEGFKAKAAVLGVIGSVVRVG-GARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKR 259 (595)
Q Consensus 181 ~rL~klL~~~~~kaK~alLsAIgSlA~a~-g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~ 259 (595)
|+|...++...-..|...+-|++.+.... ..-..++++.++|.|.+.|.-+|..+|.+++++|..+...-.+.+.+|..
T Consensus 326 p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~ 405 (415)
T PF12460_consen 326 PKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS 405 (415)
T ss_pred HHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 88888887776668888888888888633 33356888999999999999999999999999999998877889999998
Q ss_pred HHHHHHH
Q 046417 260 SCLAALE 266 (595)
Q Consensus 260 ~~I~~Le 266 (595)
.+++.|-
T Consensus 406 sLI~~LL 412 (415)
T PF12460_consen 406 SLIPRLL 412 (415)
T ss_pred HHHHHHH
Confidence 8887764
No 59
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.48 E-value=0.0051 Score=73.73 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=48.4
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417 179 LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK 251 (595)
Q Consensus 179 Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg 251 (595)
|+|-|...|.+.--.+-.-+|.++..++.-+-. -++++-.++.....+|-+++...|-+++..|.+++..++
T Consensus 657 llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll-~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 657 LLPLLQQGLTDGEEAVIVSALGSLSILIKLGLL-RKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HHHHHHHhccCcchhhHHHHHHHHHHHHHhccc-chHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 556666666554322222334444444444333 267788888888889999888889999999999998765
No 60
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.47 E-value=0.0036 Score=68.87 Aligned_cols=193 Identities=17% Similarity=0.175 Sum_probs=136.6
Q ss_pred HHHHHhhhcCCC---ChHHHHHHHHHHHHHh--CC--cCcHHHHHHhhhhcCCC-CChHHHHHHHHHHHHHHHHccccch
Q 046417 22 RVITCLNKLADR---DTLPVATAELESIART--LT--QDSFSSFLNCLQTTDSS-SKSPVRKQCVNLLTLLSRSHGDSLS 93 (595)
Q Consensus 22 rvl~~L~KL~Dr---DT~r~A~~~LD~lA~~--L~--~~~lp~fL~~L~d~~ss-~kp~vRKaaI~lLG~lAEg~gd~I~ 93 (595)
.|.+-|.++++. |.++.|+.+|-.|... +. .+.+..+|..+.+.... .+..-|+-|++.|+.+++..+..+.
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~ 366 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLF 366 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhh
Confidence 455666777654 4788999998877653 22 23366666666666554 4578999999999999999999888
Q ss_pred hhHHHHHHHHHhhccCCChhH-HHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHH-HHHHHHhcCC-C
Q 046417 94 PHLSKMISTVSCRLRDPDSSV-RSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAM-CLAAAIDAAP-N 170 (595)
Q Consensus 94 PhLpkIL~~IvrrLkD~ds~V-R~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~-cLaaviE~a~-d 170 (595)
.+-.-.+--++..-+|++..| |.|.-+++..++.+.. +. -+..+...|+++.++. ..|+. ++.+++|... +
T Consensus 367 DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P---~~-~I~~i~~~Ilt~D~~~--~~~~iKm~Tkl~e~l~~E 440 (516)
T KOG2956|consen 367 DSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP---LQ-CIVNISPLILTADEPR--AVAVIKMLTKLFERLSAE 440 (516)
T ss_pred chHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc---hh-HHHHHhhHHhcCcchH--HHHHHHHHHHHHhhcCHH
Confidence 888777888888889988764 8888888888888773 21 1222333344444443 23344 7899999964 5
Q ss_pred chHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHH-HhhcccCcCcHHhH
Q 046417 171 PEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVV-RVGGARSKGVLDWL 220 (595)
Q Consensus 171 ~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA-~a~g~~~~~yl~~l 220 (595)
.+...++.|+|.+++..++..--+|-.++=|+=++. .+|...+.||+..|
T Consensus 441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 556899999999999999987777655554444444 45557788998765
No 61
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.0024 Score=68.51 Aligned_cols=249 Identities=13% Similarity=0.128 Sum_probs=157.1
Q ss_pred hhhcCCCChHHHHHHHHHHHHHhCC-------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHH--HccccchhhHH
Q 046417 27 LNKLADRDTLPVATAELESIARTLT-------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSR--SHGDSLSPHLS 97 (595)
Q Consensus 27 L~KL~DrDT~r~A~~~LD~lA~~L~-------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAE--g~gd~I~PhLp 97 (595)
|+|--|.-.++-|...|-.|..... ...+|++++.+.. .++.+|..|..+++.++- .+-..+..-=|
T Consensus 175 LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s----~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 175 LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKS----GDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhcc----CChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 3343355588889999988877643 3447888877765 468899999999998874 44466677778
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch--h-ccHHHHHHHhhcCChhHHHHHHHHHHHHH-hcCCCc-h
Q 046417 98 KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS--V-LSKPLIELILVEQDVNSQVGGAMCLAAAI-DAAPNP-E 172 (595)
Q Consensus 98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~--~-~l~PLi~aLl~d~nk~VQ~~AA~cLaavi-E~a~d~-~ 172 (595)
+++|.++....|+++.|.--+-.+|+.++....-+-.+ . -++-+++.| .+..-..-.+...|+..+- -...+. +
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrnisihplNe~lI 329 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELL-QSPMGPLILASVACIRNISIHPLNEVLI 329 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhhcccccCcccce
Confidence 99999999999999999888888999999643211111 1 344455555 4444333444555554432 111111 1
Q ss_pred --HHHHHHHHHHHHHhhccC-chhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417 173 --VEQLRKLLPRLGKAVRIE-GFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAV 248 (595)
Q Consensus 173 --~~~L~~Ll~rL~klL~~~-~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~ 248 (595)
.++|.+ |+.+|+-. +-.+|-++.+.+..+|...+..-..++ ...+|.|++.+-|..-.+|....-|++.+|.
T Consensus 330 ~dagfl~p----LVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 330 ADAGFLRP----LVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred ecccchhH----HHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 234443 34445433 333566778889888875443322222 3468999999988765665555556666554
Q ss_pred Hh--HHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417 249 FD--KDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEM 286 (595)
Q Consensus 249 av--ge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~ 286 (595)
.. ++.|..+ -++++|-..-+|--.-||+.+..||--
T Consensus 406 ~d~~k~~lld~--gi~~iLIp~t~s~s~Ev~gNaAaAL~N 443 (550)
T KOG4224|consen 406 NDNDKEALLDS--GIIPILIPWTGSESEEVRGNAAAALIN 443 (550)
T ss_pred ccccHHHHhhc--CCcceeecccCccchhhcccHHHHHHh
Confidence 43 4444433 245555556667788899998888753
No 62
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.0014 Score=68.88 Aligned_cols=121 Identities=21% Similarity=0.232 Sum_probs=94.0
Q ss_pred HHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhcc
Q 046417 59 LNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLS 138 (595)
Q Consensus 59 L~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l 138 (595)
|.....-.++.+|...=.++..+-.+++.|.+.+.+.|.+++-+|++.++.+.+.|-.|+|.|++.|...+-+. ....+
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~-i~~~l 168 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS-IDQEL 168 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 33333335567899999999999999999999999999999999999999999999999999999999877431 11267
Q ss_pred HHHHHHHhh---cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 046417 139 KPLIELILV---EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPR 182 (595)
Q Consensus 139 ~PLi~aLl~---d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~r 182 (595)
..|+-.|++ ..+.-|-..|=-||.+++..+.. ...|+.|.+.
T Consensus 169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp--~~~L~~L~~~ 213 (334)
T KOG2933|consen 169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP--QKLLRKLIPI 213 (334)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh--HHHHHHHHHH
Confidence 777777765 34556777888889999987543 2355555555
No 63
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.43 E-value=0.00017 Score=50.62 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=28.0
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHhhhhh
Q 046417 99 MISTVSCRLRDPDSSVRSACVAATTAMSLNI 129 (595)
Q Consensus 99 IL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l 129 (595)
|+|.+++.++|+++.||.+++++||.|++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 6899999999999999999999999999864
No 64
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.37 E-value=0.00088 Score=78.20 Aligned_cols=136 Identities=20% Similarity=0.227 Sum_probs=117.9
Q ss_pred HHHHHHHHhcCCCch-HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCC---H
Q 046417 158 AMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDD---W 233 (595)
Q Consensus 158 A~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dD---W 233 (595)
-.+|..++-+.+... .|.++.|+|-|+..|.-++..+|...+.+|..+..-.+.....++..++|.+...=.+.| .
T Consensus 888 l~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~ 967 (1030)
T KOG1967|consen 888 LEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMM 967 (1030)
T ss_pred HHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchh
Confidence 345788888876554 589999999999999999999998888888877766666567889999999998876654 7
Q ss_pred HHHHHHHHHHHHHHHHhH-HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417 234 ATRKAAAEVLGKVAVFDK-DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 234 ~~RkaAaEaLgsIA~avg-e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~ 293 (595)
.+|..|+.||+++.+.+. ..+.+|.+.+|+.|+-|--||...||.-+.++=|.|-.+...
T Consensus 968 ~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~s~ 1028 (1030)
T KOG1967|consen 968 VVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLGSK 1028 (1030)
T ss_pred HHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcccC
Confidence 899999999999999886 688889999999999999999999999999999999988754
No 65
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0052 Score=66.01 Aligned_cols=222 Identities=16% Similarity=0.154 Sum_probs=137.0
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHh------C---CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc
Q 046417 22 RVITCLNKLADRDTLPVATAELESIART------L---TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL 92 (595)
Q Consensus 22 rvl~~L~KL~DrDT~r~A~~~LD~lA~~------L---~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I 92 (595)
.++-.|.|-+|-|.+-.+...+-.||-. | .|..++.++...- +..+.++=.+-.+|+.+|.-- ++.
T Consensus 211 pvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd----~~s~kvkcqA~lALrnlasdt-~Yq 285 (550)
T KOG4224|consen 211 PVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMD----DGSDKVKCQAGLALRNLASDT-EYQ 285 (550)
T ss_pred hhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHh----CCChHHHHHHHHHHhhhcccc-hhh
Confidence 4667788889999666666666555432 2 2334555544443 455788888889999887543 222
Q ss_pred hhhHH-HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcC
Q 046417 93 SPHLS-KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAA 168 (595)
Q Consensus 93 ~PhLp-kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a 168 (595)
.|-.. --+|.+++.|+||---.--|.+.++..++-+=..+..+ -|++||+..|--..+..+|.+|..-|-.+--..
T Consensus 286 ~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass 365 (550)
T KOG4224|consen 286 REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS 365 (550)
T ss_pred hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh
Confidence 22111 12578888888886554445555555555332222223 299999999954455668888877655543321
Q ss_pred CCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 046417 169 PNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGK 245 (595)
Q Consensus 169 ~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgs 245 (595)
..-.-.+.+ --+|++..++-+....++.-+-.||+-++-. ..+..|| ..++|.|++.+.+..-.+|.-|+++|+.
T Consensus 366 e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~N 443 (550)
T KOG4224|consen 366 EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALIN 443 (550)
T ss_pred hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHh
Confidence 111112222 2456777777777666776655666655432 2233333 3468889999999999999999999999
Q ss_pred HHHHh
Q 046417 246 VAVFD 250 (595)
Q Consensus 246 IA~av 250 (595)
+..-+
T Consensus 444 lss~v 448 (550)
T KOG4224|consen 444 LSSDV 448 (550)
T ss_pred hhhhh
Confidence 87655
No 66
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.033 Score=67.01 Aligned_cols=231 Identities=15% Similarity=0.119 Sum_probs=160.8
Q ss_pred hHHHHHHHHHHHHHh-----CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccC
Q 046417 35 TLPVATAELESIART-----LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRD 109 (595)
Q Consensus 35 T~r~A~~~LD~lA~~-----L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD 109 (595)
+++=|...|+.+... +-...+..+.+.|.+.+++...+.|+..+..|-.|-+.|+....-.+++.|+-++=.++|
T Consensus 670 vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke 749 (1176)
T KOG1248|consen 670 VQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKE 749 (1176)
T ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccc
Confidence 666677778777766 333447777888888888888899999999999999999955666788888888888888
Q ss_pred CChhH---HHHHHHHHHHhhhhhcC--Cc-c-h--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhc-CCCchHHHHHHH
Q 046417 110 PDSSV---RSACVAATTAMSLNITK--PS-F-S--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDA-APNPEVEQLRKL 179 (595)
Q Consensus 110 ~ds~V---R~Ac~~aLg~LA~~l~~--~~-~-~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~-a~d~~~~~L~~L 179 (595)
-+..- +-+|..-+|++...+.+ ++ . + .|+.-|..+|.++.. .+-.....|+..++.+ ......++++++
T Consensus 750 ~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~-~~~as~Ivai~~il~e~~~~ld~~~l~~l 828 (1176)
T KOG1248|consen 750 VNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDST-RVVASDIVAITHILQEFKNILDDETLEKL 828 (1176)
T ss_pred ccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHH-HHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 87765 45566666643333322 22 1 2 266666666654432 2222224555555544 333335899999
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHHHHHhhc-ccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-HhHHHH
Q 046417 180 LPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG-ARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DLATEY 257 (595)
Q Consensus 180 l~rL~klL~~~~~kaK~alLsAIgSlA~a~g-~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~f~py 257 (595)
+.-+.-+|.+++.++..++|+.|..++..-. .-..++++.+||.+...+.+-.-..|+..--.|-.+..-.| +.+..|
T Consensus 829 i~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~ 908 (1176)
T KOG1248|consen 829 ISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESF 908 (1176)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhh
Confidence 9999999999999988888888887776543 23468889999999995555566788888888888877776 555555
Q ss_pred HH-HHHHHHH
Q 046417 258 KR-SCLAALE 266 (595)
Q Consensus 258 ~~-~~I~~Le 266 (595)
++ .-+++|.
T Consensus 909 ~pee~~klL~ 918 (1176)
T KOG1248|consen 909 LPEEDMKLLT 918 (1176)
T ss_pred CHHHHHHHHH
Confidence 54 3344444
No 67
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.31 E-value=0.0035 Score=68.95 Aligned_cols=153 Identities=16% Similarity=0.032 Sum_probs=102.6
Q ss_pred HHHHHHHHhhc-cCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHH
Q 046417 97 SKMISTVSCRL-RDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQ 175 (595)
Q Consensus 97 pkIL~~IvrrL-kD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~ 175 (595)
+..++.++..| .|+++.|+.+++.++..... + ..+..|+.+| .+.+..|..+++.+|..+-
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~-----~--~~~~~L~~~L-~d~~~~vr~aaa~ALg~i~---------- 114 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQED-----A--LDLRSVLAVL-QAGPEGLCAGIQAALGWLG---------- 114 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccCC-----h--HHHHHHHHHh-cCCCHHHHHHHHHHHhcCC----------
Confidence 34566777777 57888888888777653332 1 1267788888 6777778888888776422
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHH
Q 046417 176 LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLAT 255 (595)
Q Consensus 176 L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~ 255 (595)
.+...+.|..+|++++..++.+++.+++- -. . ...+.|...|.++|-.+|.+|+.+||.|.... ...
T Consensus 115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~---r~----~----~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~--a~~ 181 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEPPGRAIGLAALGA---HR----H----DPGPALEAALTHEDALVRAAALRALGELPRRL--SES 181 (410)
T ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHh---hc----c----ChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc--chH
Confidence 23456677778888887788777766663 11 1 12356777777889999999999999885432 111
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417 256 EYKRSCLAALETRRFDKVKIVRETMNRSLEMWK 288 (595)
Q Consensus 256 py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K 288 (595)
.|...+.|.-+.||.+++.+|-..+
T Consensus 182 --------~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 182 --------TLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred --------HHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 1233355888999999998886554
No 68
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.30 E-value=0.0022 Score=53.80 Aligned_cols=87 Identities=23% Similarity=0.286 Sum_probs=63.6
Q ss_pred HHHHHHhh-ccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 046417 180 LPRLGKAV-RIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYK 258 (595)
Q Consensus 180 l~rL~klL-~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~ 258 (595)
++.|++.| ++++..+|..++.++|.+ .-+.++|.|.+.+.+++|.+|.+|+.+|+.|.. .+ ..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--~~----~~ 64 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD--PE----AI 64 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--HH----TH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--HH----HH
Confidence 36677878 788899998888888721 124689999999999999999999999998842 11 12
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHH
Q 046417 259 RSCLAALETRRFDKVKIVRETMNRSLE 285 (595)
Q Consensus 259 ~~~I~~Le~crfDKVK~VRda~~~aL~ 285 (595)
+.+++. ++.|+-..||.++.++|.
T Consensus 65 ~~L~~~---l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 65 PALIKL---LQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHH---HTC-SSHHHHHHHHHHHH
T ss_pred HHHHHH---HcCCCcHHHHHHHHhhcC
Confidence 222223 445677899999999873
No 69
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.29 E-value=0.0068 Score=58.83 Aligned_cols=146 Identities=16% Similarity=0.064 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHH
Q 046417 38 VATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSA 117 (595)
Q Consensus 38 ~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~A 117 (595)
-++-.|--|+..+| ..+.++++.|.....+++|.+|+.|+..|.-|.....-.+.+ .++..++..|.|+++.||..
T Consensus 7 n~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~---~l~~~~l~~l~D~~~~Ir~~ 82 (178)
T PF12717_consen 7 NAIIALGDLCIRYP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKG---QLFSRILKLLVDENPEIRSL 82 (178)
T ss_pred HHHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehh---hhhHHHHHHHcCCCHHHHHH
Confidence 35556666677674 457777777777777788999999999999988765544454 55667777889999999999
Q ss_pred HHHHHHHhhhhhcCCcchhccHHHHHHHhhcC-Ch----hHHHHHHHHHHHHHhcCC-Cch-HHHHHHHHHHHHHhh
Q 046417 118 CVAATTAMSLNITKPSFSVLSKPLIELILVEQ-DV----NSQVGGAMCLAAAIDAAP-NPE-VEQLRKLLPRLGKAV 187 (595)
Q Consensus 118 c~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~-nk----~VQ~~AA~cLaaviE~a~-d~~-~~~L~~Ll~rL~klL 187 (595)
|...+..++.......+...+..++..|.+.. .+ .-...--.-+.-+++... +.. ...+++||.|+....
T Consensus 83 A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~~ 159 (178)
T PF12717_consen 83 ARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNAV 159 (178)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHc
Confidence 99999888876422222346777777773211 11 111111122344555544 322 345566777766554
No 70
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.29 E-value=0.033 Score=59.05 Aligned_cols=192 Identities=17% Similarity=0.215 Sum_probs=120.4
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc--cccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc--
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH--GDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT-- 130 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~--gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~-- 130 (595)
|.-++..+.+. +...|++++..|-.+-..+ .+++..+...|+..+.+.++=..+.=+..++.+++-++-.+.
T Consensus 45 L~~~Id~l~eK----~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 45 LKEAIDLLTEK----SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHhc----CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC
Confidence 44455555543 3789999999988777666 489999999999999999998877656677778888886653
Q ss_pred CCc--chh-ccHHHHHHHhhcCChhHHH--HH--HHHHHHHHhcCCCchHHHHHHHHHHHHHh--hccC----------c
Q 046417 131 KPS--FSV-LSKPLIELILVEQDVNSQV--GG--AMCLAAAIDAAPNPEVEQLRKLLPRLGKA--VRIE----------G 191 (595)
Q Consensus 131 ~~~--~~~-~l~PLi~aLl~d~nk~VQ~--~A--A~cLaaviE~a~d~~~~~L~~Ll~rL~kl--L~~~----------~ 191 (595)
... ... +.++|...+ .+....++. .+ |+++..++-........-+-+.|.-++.. ++.. .
T Consensus 121 ~~~~ei~~~~~~~L~~~l-~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 121 EDSEEIFEELKPVLKRIL-TDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred ccHHHHHHHHHHHHHHHH-hCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCc
Confidence 111 112 334444444 555444443 22 33444555332221111111334422221 1111 2
Q ss_pred hhHHHHHHHHHHHHHHhhcc-cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417 192 FKAKAAVLGVIGSVVRVGGA-RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK 251 (595)
Q Consensus 192 ~kaK~alLsAIgSlA~a~g~-~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg 251 (595)
..+..++|.+-+-++..... ....+++..+|.|.++|.++|-.+|.+|-|+|+.|-....
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 34667777777766653221 2235567889999999999999999999999998876554
No 71
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.27 E-value=0.0011 Score=70.44 Aligned_cols=223 Identities=16% Similarity=0.176 Sum_probs=144.8
Q ss_pred HHHHHHHHHHhC--------CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHH---HHccccchh--hHHHHHHHHHh
Q 046417 39 ATAELESIARTL--------TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLS---RSHGDSLSP--HLSKMISTVSC 105 (595)
Q Consensus 39 A~~~LD~lA~~L--------~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lA---Eg~gd~I~P--hLpkIL~~Ivr 105 (595)
|+=.|-.+|..- +...+|.|++.|.+. .-.+|+.++-+||.+| ++|-|++.. -|..++..+..
T Consensus 135 AaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~----~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~s 210 (526)
T COG5064 135 AAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST----EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS 210 (526)
T ss_pred HHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc----hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHh
Confidence 555566666532 345589999888864 4589999999999997 577787743 35555554441
Q ss_pred hccCCC-hhHHHHHHHHHHHhhhhhcCCcc---hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHH-HH
Q 046417 106 RLRDPD-SSVRSACVAATTAMSLNITKPSF---SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRK-LL 180 (595)
Q Consensus 106 rLkD~d-s~VR~Ac~~aLg~LA~~l~~~~~---~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~-Ll 180 (595)
.-++ +.+|.++ |+|.-|++----+|. +....|++.-|+-.-++.+-..||-|+.-+.++..+.+...+.- ++
T Consensus 211 --s~~~ismlRn~T-WtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~ 287 (526)
T COG5064 211 --SAIHISMLRNAT-WTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIP 287 (526)
T ss_pred --ccchHHHHHHhH-HHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCc
Confidence 1122 3456655 899888864322222 23455666666567788899999999999888765555445543 78
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH---hH--
Q 046417 181 PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD---LA-- 254 (595)
Q Consensus 181 ~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge---~f-- 254 (595)
+||+.+|.+++.+++.-+|..||.|+.-...-..-.+ -..++.+...|++.--..||.||=+|+.|...--+ .+
T Consensus 288 ~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid 367 (526)
T COG5064 288 GRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVID 367 (526)
T ss_pred HHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHh
Confidence 9999999999999988888888877643222111111 12456666668877669999999999988542211 11
Q ss_pred HHHHHHHHHHHHhc
Q 046417 255 TEYKRSCLAALETR 268 (595)
Q Consensus 255 ~py~~~~I~~Le~c 268 (595)
...+++.+..|+..
T Consensus 368 ~nliPpLi~lls~a 381 (526)
T COG5064 368 ANLIPPLIHLLSSA 381 (526)
T ss_pred cccchHHHHHHHHH
Confidence 11345566666644
No 72
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.20 E-value=0.0032 Score=62.05 Aligned_cols=136 Identities=24% Similarity=0.375 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHH-ccccchhhHHHHHHHH------------HhhccCCChhHHHHHHHHHHHhhhhhcC--------
Q 046417 73 VRKQCVNLLTLLSRS-HGDSLSPHLSKMISTV------------SCRLRDPDSSVRSACVAATTAMSLNITK-------- 131 (595)
Q Consensus 73 vRKaaI~lLG~lAEg-~gd~I~PhLpkIL~~I------------vrrLkD~ds~VR~Ac~~aLg~LA~~l~~-------- 131 (595)
+|-+++.+|..++.. -+..+..|++.++|.. .-.++||++.||.+++.++..|=+..-.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 577777777777777 4466677777777644 4557899999999999999887643210
Q ss_pred --C--cchh-----------ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch--HHHHHHHHHHHHHhhccCchhH
Q 046417 132 --P--SFSV-----------LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE--VEQLRKLLPRLGKAVRIEGFKA 194 (595)
Q Consensus 132 --~--~~~~-----------~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~--~~~L~~Ll~rL~klL~~~~~ka 194 (595)
. .|.. +=.-|+.+|..+++..+.....-||+.+|++.++.- .+++.+++..+..++.+.+..+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 0 1111 223344455457787888888999999999986543 4799999999999999988889
Q ss_pred HHHHHHHHHHHHHh
Q 046417 195 KAAVLGVIGSVVRV 208 (595)
Q Consensus 195 K~alLsAIgSlA~a 208 (595)
+.+.+.++|.++.+
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999988865
No 73
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.12 E-value=0.0035 Score=70.81 Aligned_cols=206 Identities=17% Similarity=0.112 Sum_probs=149.1
Q ss_pred hHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChh
Q 046417 35 TLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSS 113 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~ 113 (595)
.++.++.-|-.-|.++++.. +..+|+.+-+.- -+-..|.-.+.++--+--+.+|...||..+|+-.+-..|-|+|..
T Consensus 184 mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~--LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~pllided~~ 261 (975)
T COG5181 184 MRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRE--LEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLIDEDLK 261 (975)
T ss_pred hhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh--hhhhhhHhHHHHHHHHHHhcccccccceeeEEEEeeccccCccHH
Confidence 56678888877888888766 778888876642 233578888899888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHhhccCch
Q 046417 114 VRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPN-PEVEQLRKLLPRLGKAVRIEGF 192 (595)
Q Consensus 114 VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d-~~~~~L~~Ll~rL~klL~~~~~ 192 (595)
+|.--.+-+..|+..+.-...++-+.|=+ ...+++|...-+.|.+.+....+. .+.|+|+.+|. -- .+.
T Consensus 262 ~r~~g~eii~nL~~~~Gl~~~vs~mrpDi----~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~----Sr--kSw 331 (975)
T COG5181 262 RRCMGREIILNLVYRCGLGFSVSSMRPDI----TSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCG----SR--KSW 331 (975)
T ss_pred HhcccHHHHHHHHHHhccceeeeeccCCc----ccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhc----Cc--cch
Confidence 98776666666665542110001222211 345778877777776777766532 12334433332 11 366
Q ss_pred hHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Q 046417 193 KAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD 252 (595)
Q Consensus 193 kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge 252 (595)
+++-.-|.++.-|+.-.|..-.+|+..+|.+|..+|.|+.-.+|..++.+|+++|..+|.
T Consensus 332 ~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~P 391 (975)
T COG5181 332 EARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGP 391 (975)
T ss_pred hhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCC
Confidence 666667777777777666666799999999999999999999999999999999998864
No 74
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.94 E-value=0.0011 Score=46.45 Aligned_cols=30 Identities=40% Similarity=0.515 Sum_probs=27.0
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 046417 220 LVPCLVEFLCCDDWATRKAAAEVLGKVAVF 249 (595)
Q Consensus 220 lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a 249 (595)
++|.+.+.+.|++|.+|.+|+.+|+.|+..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999864
No 75
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.19 Score=60.30 Aligned_cols=259 Identities=15% Similarity=0.152 Sum_probs=147.9
Q ss_pred HHHHHHhhhcCCCCh--HHHHHHHHHHHHHhCCcCcHHHHHHhhhh----cCCCCChHHHHHHHHHHHHHHHHccccchh
Q 046417 21 QRVITCLNKLADRDT--LPVATAELESIARTLTQDSFSSFLNCLQT----TDSSSKSPVRKQCVNLLTLLSRSHGDSLSP 94 (595)
Q Consensus 21 ~rvl~~L~KL~DrDT--~r~A~~~LD~lA~~L~~~~lp~fL~~L~d----~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P 94 (595)
--+...|.-|.|.|| +-.|+..+-.++..||.+.....+.-+.+ ...+.-|- .++++||.+|.. ..+.|
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWH---gacLaLAELA~r--GlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWH---GACLALAELALR--GLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHH---HHHHHHHHHHhc--CCcch
Confidence 334455666778885 57899999999999996554444444433 21111233 888887777642 22344
Q ss_pred -hHHHHHHHHHhhccCC--------ChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh----cCChhHHHHHHHHH
Q 046417 95 -HLSKMISTVSCRLRDP--------DSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV----EQDVNSQVGGAMCL 161 (595)
Q Consensus 95 -hLpkIL~~IvrrLkD~--------ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~----d~nk~VQ~~AA~cL 161 (595)
-++.|+|.|++.|.=. ...||+|+|..+=++++-........++..|+.+|+. |.+-++--+|+.||
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 4788999999887533 3569999999998888866422111244445555543 67777777888777
Q ss_pred HHHHhcC---CCch--H--------------------------HHHHHHHHHHHHh-hccCchhHHHHHHHHHHHHHHhh
Q 046417 162 AAAIDAA---PNPE--V--------------------------EQLRKLLPRLGKA-VRIEGFKAKAAVLGVIGSVVRVG 209 (595)
Q Consensus 162 aaviE~a---~d~~--~--------------------------~~L~~Ll~rL~kl-L~~~~~kaK~alLsAIgSlA~a~ 209 (595)
...|--- +..+ . .|.+.+..++..- +-+=+.+.|....-++.-+..-.
T Consensus 496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~ 575 (1133)
T KOG1943|consen 496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE 575 (1133)
T ss_pred HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh
Confidence 7766331 1110 0 1122222222211 11113335555544555444322
Q ss_pred cccCcCcHH-hHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH--HhHHHH-----H---HHHHHHHHhccCCch--HHH
Q 046417 210 GARSKGVLD-WLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK--DLATEY-----K---RSCLAALETRRFDKV--KIV 276 (595)
Q Consensus 210 g~~~~~yl~-~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg--e~f~py-----~---~~~I~~Le~crfDKV--K~V 276 (595)
+.|+. ..+|.|....-..|-..|....-+.|.|..+.. +.+..+ . .+.+.-+...+|++= ...
T Consensus 576 ----pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lm 651 (1133)
T KOG1943|consen 576 ----PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLM 651 (1133)
T ss_pred ----HHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHH
Confidence 23332 456667777667777889999999988877653 211111 1 223444555555555 456
Q ss_pred HHHHHHHHHHhH
Q 046417 277 RETMNRSLEMWK 288 (595)
Q Consensus 277 Rda~~~aL~~~K 288 (595)
|.++...++.+.
T Consensus 652 r~~~~~~Ie~~s 663 (1133)
T KOG1943|consen 652 RQATLKFIEQLS 663 (1133)
T ss_pred HHHHHHHHHHhh
Confidence 666665555443
No 76
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.89 E-value=0.014 Score=60.36 Aligned_cols=195 Identities=16% Similarity=0.159 Sum_probs=127.9
Q ss_pred hCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc---ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHh
Q 046417 49 TLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG---DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAM 125 (595)
Q Consensus 49 ~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g---d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~L 125 (595)
.|+++.+..++.+|..+ .+|..++.++.++|..|. ++ +.|.. + ..++.|...|.+|++.||.-++++|..|
T Consensus 8 ~l~~~~l~~Ll~lL~~t---~dp~i~e~al~al~n~aa-f~~nq~~Ir~-~-Ggi~lI~~lL~~p~~~vr~~AL~aL~Nl 81 (254)
T PF04826_consen 8 ILEAQELQKLLCLLEST---EDPFIQEKALIALGNSAA-FPFNQDIIRD-L-GGISLIGSLLNDPNPSVREKALNALNNL 81 (254)
T ss_pred CcCHHHHHHHHHHHhcC---CChHHHHHHHHHHHhhcc-ChhHHHHHHH-c-CCHHHHHHHcCCCChHHHHHHHHHHHhc
Confidence 36677788888888753 579999999999999754 32 22221 1 3477899999999999999999999998
Q ss_pred hhhhcCCcch-hccHHHHHHHhhc-CChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 046417 126 SLNITKPSFS-VLSKPLIELILVE-QDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIG 203 (595)
Q Consensus 126 A~~l~~~~~~-~~l~PLi~aLl~d-~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIg 203 (595)
+.....+..+ .|+..+.+.+... -|..+|.++-.+|..+. ..+..-..+...++.|+.+|...+-++|..++.++.
T Consensus 82 s~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 82 SVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred CCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHH
Confidence 8655322222 3777777766543 47789988777777763 222223456667888889999888889999998888
Q ss_pred HHHHhhcccCcCcHHhHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhH
Q 046417 204 SVVRVGGARSKGVLDWLVPCLVEFLCC-DDWATRKAAAEVLGKVAVFDK 251 (595)
Q Consensus 204 SlA~a~g~~~~~yl~~lmp~L~e~L~~-dDW~~RkaAaEaLgsIA~avg 251 (595)
-++.-......-+-...++.+...+.. .+-.....++..+..|-...+
T Consensus 160 nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 160 NLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred HhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 777521110000012234555544443 344555556666666655553
No 77
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.72 E-value=0.016 Score=57.21 Aligned_cols=113 Identities=21% Similarity=0.256 Sum_probs=85.5
Q ss_pred HHHHHHHHhhc---cC-chhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHH---HHHh
Q 046417 178 KLLPRLGKAVR---IE-GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKV---AVFD 250 (595)
Q Consensus 178 ~Ll~rL~klL~---~~-~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsI---A~av 250 (595)
.++|-|+.=|. ++ .|-+...+.+.+.. .++....|.++++++.|...|...|-.+..+++.+|..+ ...+
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~---~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLER---GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 45555554443 22 44455555455443 244456799999999999999999999999999999999 6678
Q ss_pred HHhHHHHHHHHHHHHH---hcc--------CCchHHHHHHHHHHHHHhHhcCCC
Q 046417 251 KDLATEYKRSCLAALE---TRR--------FDKVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 251 ge~f~py~~~~I~~Le---~cr--------fDKVK~VRda~~~aL~~~K~i~~~ 293 (595)
|+.+.||..+++.+|. +++ |.+-+-++|.+.++|+++-+-.|.
T Consensus 115 G~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~ 168 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGP 168 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcCh
Confidence 9999999888877776 333 456689999999999999887765
No 78
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.70 E-value=0.0026 Score=49.55 Aligned_cols=54 Identities=30% Similarity=0.188 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417 233 WATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEM 286 (595)
Q Consensus 233 W~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~ 286 (595)
|.+|.+|+.+||.++...++.+.+|.+.+++.|..+--|.-..||.++..||..
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 899999999999999888999999999999999988888888999999999863
No 79
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.57 E-value=0.23 Score=51.64 Aligned_cols=197 Identities=18% Similarity=0.135 Sum_probs=116.6
Q ss_pred HhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccc-hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc--CC---
Q 046417 60 NCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSL-SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT--KP--- 132 (595)
Q Consensus 60 ~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I-~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~--~~--- 132 (595)
..|.++..++++..|..++.+|+.+.+..+ +.+ ..++.-|+.++..+|.|... |..| ..++.+|...-. ..
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~-~~~~-l~gl~~L~~~~~~~~~~~~ 79 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHAC-VQPA-LKGLLALVKMKNFSPESAV 79 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhh-HHHH-HHHHHHHHhCcCCChhhHH
Confidence 356778888899999999999999999887 555 55788899999999966554 4444 666666663211 00
Q ss_pred -------------cc--h--hccHHHHHHHhhcCChhHHHH---HHHHHHHHHhcCCCch-HHHHHHHHHHHHHhhc---
Q 046417 133 -------------SF--S--VLSKPLIELILVEQDVNSQVG---GAMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVR--- 188 (595)
Q Consensus 133 -------------~~--~--~~l~PLi~aLl~d~nk~VQ~~---AA~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~--- 188 (595)
.. . ..+--|+..|+.+....++.. -...+-.++++..|+- +-+.=+|.+.+.+.+.
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~ 159 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISE 159 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccch
Confidence 00 0 022233444433221122211 1222334555555542 2222334444443331
Q ss_pred ---------------------cCchh-----HHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHH
Q 046417 189 ---------------------IEGFK-----AKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEV 242 (595)
Q Consensus 189 ---------------------~~~~k-----aK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEa 242 (595)
++.++ .|.++..|+.+ .+.|.+.++|.|.+.|.++.-.++.-++++
T Consensus 160 ~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s--------~~~fa~~~~p~LleKL~s~~~~~K~D~L~t 231 (262)
T PF14500_consen 160 FAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS--------TPLFAPFAFPLLLEKLDSTSPSVKLDSLQT 231 (262)
T ss_pred hHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC--------cHhhHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 11111 33333333331 345567899999999998887888888888
Q ss_pred HHHHHHHhH-HhHHHHHHHHHHHHH
Q 046417 243 LGKVAVFDK-DLATEYKRSCLAALE 266 (595)
Q Consensus 243 LgsIA~avg-e~f~py~~~~I~~Le 266 (595)
|..-....| +.+.+|...+...|.
T Consensus 232 L~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 232 LKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 888777776 578888777655543
No 80
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.41 E-value=0.18 Score=62.40 Aligned_cols=147 Identities=19% Similarity=0.279 Sum_probs=104.1
Q ss_pred CCChHHHHHHHHHHHHHhCC-cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCC
Q 046417 32 DRDTLPVATAELESIARTLT-QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDP 110 (595)
Q Consensus 32 DrDT~r~A~~~LD~lA~~L~-~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ 110 (595)
|+|+.+..+..|-. .-+ ...+..+|..|.....++....|--|+++|..++|.=+..+. .+.+-..|..|+.|+
T Consensus 793 d~~~a~li~~~la~---~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~Ds 867 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAH---ARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDS 867 (1692)
T ss_pred cchhHHHHHHHHHh---hhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccc
Confidence 55666655555432 222 223778888888777777899999999999999998775442 247888999999999
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhc
Q 046417 111 DSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVR 188 (595)
Q Consensus 111 ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~ 188 (595)
..+||+|+++=+|++.-... ..+ -|..-+++-++ |..-.|-..+.--|..+||+-++.. ....+|.+++.-.+
T Consensus 868 sasVREAaldLvGrfvl~~~--e~~~qyY~~i~erIl-DtgvsVRKRvIKIlrdic~e~pdf~--~i~~~cakmlrRv~ 941 (1692)
T KOG1020|consen 868 SASVREAALDLVGRFVLSIP--ELIFQYYDQIIERIL-DTGVSVRKRVIKILRDICEETPDFS--KIVDMCAKMLRRVN 941 (1692)
T ss_pred hhHHHHHHHHHHhhhhhccH--HHHHHHHHHHHhhcC-CCchhHHHHHHHHHHHHHHhCCChh--hHHHHHHHHHHHhc
Confidence 99999999999999886542 222 26777777773 5666677788887888888765533 44445555444443
No 81
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.23 Score=58.13 Aligned_cols=81 Identities=11% Similarity=0.067 Sum_probs=54.9
Q ss_pred HHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHH
Q 046417 42 ELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAA 121 (595)
Q Consensus 42 ~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~a 121 (595)
+|-.+..-.++|..+-+.+.+.+-.++.++.+||-|+++.--+-+-.++.+ .-+++...++|+|.+..|--+.+.-
T Consensus 127 AL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~----e~f~~~~~~lL~ek~hGVL~~~l~l 202 (866)
T KOG1062|consen 127 ALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV----EHFVIAFRKLLCEKHHGVLIAGLHL 202 (866)
T ss_pred HHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH----HHhhHHHHHHHhhcCCceeeeHHHH
Confidence 455566666777788888888887778888888888888666666555533 3345566677888887776555544
Q ss_pred HHHhh
Q 046417 122 TTAMS 126 (595)
Q Consensus 122 Lg~LA 126 (595)
+..|+
T Consensus 203 ~~e~c 207 (866)
T KOG1062|consen 203 ITELC 207 (866)
T ss_pred HHHHH
Confidence 44444
No 82
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.20 E-value=0.023 Score=51.50 Aligned_cols=58 Identities=16% Similarity=0.319 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC
Q 046417 72 PVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK 131 (595)
Q Consensus 72 ~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~ 131 (595)
..|+.++++++.+.+.+|.++..++|+|+.++...|..++ +|..|+.+...|...+.+
T Consensus 30 ~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 30 NEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKTLKE 87 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHhCCH
Confidence 7899999999999999999999999999999999998665 999999998888888753
No 83
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.38 Score=56.90 Aligned_cols=192 Identities=11% Similarity=0.101 Sum_probs=132.7
Q ss_pred hHHHHHHHHHHHHH-hCCcCcHHHHHHhhhhcCCCCC-----hHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhh-c
Q 046417 35 TLPVATAELESIAR-TLTQDSFSSFLNCLQTTDSSSK-----SPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCR-L 107 (595)
Q Consensus 35 T~r~A~~~LD~lA~-~L~~~~lp~fL~~L~d~~ss~k-----p~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr-L 107 (595)
.+|-+...+-...= -|+...+..+..-|.+...+.+ |..=++|+-.|-.+|+-.++...+.+++++.....- +
T Consensus 439 ~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~ 518 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKL 518 (982)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcccccc
Confidence 45555554433222 2343346666666666543333 678899999999999999999999999999876654 5
Q ss_pred cCCChhHHHHHHHHHHHhhhhhcCCcch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 046417 108 RDPDSSVRSACVAATTAMSLNITKPSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGK 185 (595)
Q Consensus 108 kD~ds~VR~Ac~~aLg~LA~~l~~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~k 185 (595)
.-+++..-.-|.+.+|.++.|+.+.|.. ..++-|+.+| + +.+..+ -|..-|.++||..+..+.||...++.-...
T Consensus 519 S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~L-h-~sk~s~-q~i~tl~tlC~~C~~~L~py~d~~~a~~~e 595 (982)
T KOG2022|consen 519 SAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGL-H-NSKESE-QAISTLKTLCETCPESLDPYADQFSAVCYE 595 (982)
T ss_pred ccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHh-c-CchHHH-HHHHHHHHHHHhhhhhCchHHHHHHHHHHH
Confidence 5568888889999999999999776644 2555566666 3 333322 233448999999888888999998888888
Q ss_pred hhccCchh--HHHHHHHHHHHHHHhhc-ccCcCcHHhHHHHHHHhcc
Q 046417 186 AVRIEGFK--AKAAVLGVIGSVVRVGG-ARSKGVLDWLVPCLVEFLC 229 (595)
Q Consensus 186 lL~~~~~k--aK~alLsAIgSlA~a~g-~~~~~yl~~lmp~L~e~L~ 229 (595)
.+.....+ .+..++.+||=+.+.-. +.-+.|+..++.++.+-+.
T Consensus 596 ~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle 642 (982)
T KOG2022|consen 596 VLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLE 642 (982)
T ss_pred HhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHH
Confidence 88654333 45667788887776443 2346777777776666553
No 84
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.17 E-value=0.12 Score=49.94 Aligned_cols=127 Identities=17% Similarity=0.126 Sum_probs=87.2
Q ss_pred CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc-cccchhhHHHHHHHHHhhccCCChh-HHHHHHHHHHHhhhhhc
Q 046417 53 DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH-GDSLSPHLSKMISTVSCRLRDPDSS-VRSACVAATTAMSLNIT 130 (595)
Q Consensus 53 ~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~-gd~I~PhLpkIL~~IvrrLkD~ds~-VR~Ac~~aLg~LA~~l~ 130 (595)
..+..+...|.....+.++..|-.++.+++++++.| .+.+..|-...+..++..|+.+++. +..+|+.+++.|-.++.
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 347777888877777778899999999999999999 5877788888889999999988874 79999999999998886
Q ss_pred CCcc-h-----hccHHHHHHHhhc-CChhHHHHHHHHHHHHHhcCCCchHHHHHHH
Q 046417 131 KPSF-S-----VLSKPLIELILVE-QDVNSQVGGAMCLAAAIDAAPNPEVEQLRKL 179 (595)
Q Consensus 131 ~~~~-~-----~~l~PLi~aLl~d-~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~L 179 (595)
+.+. . ..++.++..++.- ++..+...+.-+|..++..-+....|+-.+|
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt~rp~~~ki 156 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTTFRPFANKI 156 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCccccchHHHH
Confidence 5432 1 1334444444321 1123444555555555554433333444333
No 85
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.14 E-value=0.3 Score=51.24 Aligned_cols=125 Identities=21% Similarity=0.223 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhCCcCc-HHHHHHhh-hhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHH
Q 046417 38 VATAELESIARTLTQDS-FSSFLNCL-QTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVR 115 (595)
Q Consensus 38 ~A~~~LD~lA~~L~~~~-lp~fL~~L-~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR 115 (595)
++...|+.....+.+.. +.-++..| .....+.++.+|+.++++||..+=...+....|++-++..+.+ | +..|+
T Consensus 6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~---~-~~~v~ 81 (298)
T PF12719_consen 6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK---D-DEEVK 81 (298)
T ss_pred HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh---C-CHHHH
Confidence 34555666665666544 55555444 4667778899999999999999999998888888877776622 4 88899
Q ss_pred HHHHHHHHHhhhhhcCC-----cc------h-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhc
Q 046417 116 SACVAATTAMSLNITKP-----SF------S-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDA 167 (595)
Q Consensus 116 ~Ac~~aLg~LA~~l~~~-----~~------~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~ 167 (595)
..|+.++.-+.-+.... .. . .+++-+...| .+.++.+|..|+-+|+++.=.
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhc
Confidence 99999988887554211 11 1 2555566666 455888999999999998765
No 86
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.09 E-value=0.07 Score=57.24 Aligned_cols=192 Identities=15% Similarity=0.133 Sum_probs=121.4
Q ss_pred cHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh-hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC
Q 046417 54 SFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP-HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP 132 (595)
Q Consensus 54 ~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P-hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~ 132 (595)
.+|.|+..+-+. +.-...=++.-+|..+|.|-.+...- -=..-+|.+++.|.+++-.||+.++||||-+|..-..-
T Consensus 115 vVpRfvefm~~~---q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 115 VVPRFVEFMDEI---QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred ccHHHHHHHHhc---chhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH
Confidence 377787777542 22334447788889999987532100 01234678899999999999999999999999543211
Q ss_pred cch----hccHHHHHHHhhcCChhH--HHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH
Q 046417 133 SFS----VLSKPLIELILVEQDVNS--QVGGAMCLAAAIDAA-PNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSV 205 (595)
Q Consensus 133 ~~~----~~l~PLi~aLl~d~nk~V--Q~~AA~cLaaviE~a-~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSl 205 (595)
..+ -.+.||+..|. .+-.++ ---|---|..++-+- +.+.-..+.+.+|-|.|++......+-.-+.=||+=+
T Consensus 192 RD~vL~~galeplL~ll~-ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYl 270 (526)
T COG5064 192 RDYVLQCGALEPLLGLLL-SSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYL 270 (526)
T ss_pred HHHHHhcCchHHHHHHHH-hccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence 111 27889999885 333322 234445588888873 4444567888999999999777665322222233333
Q ss_pred HHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 046417 206 VRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF 249 (595)
Q Consensus 206 A~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a 249 (595)
.+...+.....+ -.+++.|++.|++++-...-+|+-++|.|.+.
T Consensus 271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG 315 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG 315 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence 222211111122 22578899999998877777888888877653
No 87
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=0.2 Score=58.52 Aligned_cols=224 Identities=17% Similarity=0.206 Sum_probs=132.3
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF 134 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~ 134 (595)
..++++.|..-..+-.-.+--++.+++-.+....+.-+.| -+..+.-.|.-|.+.+|-|+..+|-++|......
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~-- 316 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA-- 316 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc--
Confidence 4445555544433322356667777777777777777777 5667777788899999999999999999765321
Q ss_pred hhccHHHHHHHhhcCChhHHHHHHHHH----------------HHHHhcCCCc----hHH----------HHHH-HHHHH
Q 046417 135 SVLSKPLIELILVEQDVNSQVGGAMCL----------------AAAIDAAPNP----EVE----------QLRK-LLPRL 183 (595)
Q Consensus 135 ~~~l~PLi~aLl~d~nk~VQ~~AA~cL----------------aaviE~a~d~----~~~----------~L~~-Ll~rL 183 (595)
+.-+.+=++.|..+.|+.+..-|..-| +.++-...+. +.. .... ++.=|
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL 396 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFL 396 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence 123333333333444433221111111 1111111111 011 1112 34445
Q ss_pred HHhhccC-chhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHh------------c---------------------c
Q 046417 184 GKAVRIE-GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEF------------L---------------------C 229 (595)
Q Consensus 184 ~klL~~~-~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~------------L---------------------~ 229 (595)
..+|+.. .|.-|.+.+++|-.++.-......+-+..++..+.++ | .
T Consensus 397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRvi 476 (865)
T KOG1078|consen 397 SNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVI 476 (865)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhh
Confidence 5556554 8888999999999988744333233334444333322 1 0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417 230 CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWK 288 (595)
Q Consensus 230 ~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K 288 (595)
-++--+|.+|.-||+.++ +-.+... +++.-.|.+|-+|+.-.|||.+.=+|..+.
T Consensus 477 LEn~ivRaaAv~alaKfg-~~~~~l~---~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 477 LENAIVRAAAVSALAKFG-AQDVVLL---PSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhHHHHHHHHHHHh-cCCCCcc---ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 135678899999998887 2123333 356668999999999999999999888877
No 88
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.05 E-value=0.28 Score=58.04 Aligned_cols=193 Identities=15% Similarity=0.125 Sum_probs=133.4
Q ss_pred cHHHHHHhhhhcC-CCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC
Q 046417 54 SFSSFLNCLQTTD-SSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP 132 (595)
Q Consensus 54 ~lp~fL~~L~d~~-ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~ 132 (595)
-+..||....... .+..+++|-.++++|...+ -...+.|.+|.|+-.|+....+....|-.+-.+||...+..=++.
T Consensus 487 ~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef 564 (1005)
T KOG2274|consen 487 LLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEF 564 (1005)
T ss_pred HHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhh
Confidence 3555555443333 3345688888888755444 226779999999999999999999999999999998888765432
Q ss_pred cch--hccHHHHHHHhh--cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc----hhHHHHHHHHHHH
Q 046417 133 SFS--VLSKPLIELILV--EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG----FKAKAAVLGVIGS 204 (595)
Q Consensus 133 ~~~--~~l~PLi~aLl~--d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~----~kaK~alLsAIgS 204 (595)
+.. .-+-|++-+++. ..+++|-.-+=-|+..+++.+.. -.++-..++|-|+..|+.+. ......+|+.|..
T Consensus 565 ~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~-~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLtt 643 (1005)
T KOG2274|consen 565 AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAAN-YGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTT 643 (1005)
T ss_pred hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHH
Confidence 222 366777777764 56777766666777777776422 12577889999999998776 3345666788887
Q ss_pred HHHhhccc-CcCcHHhHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHH
Q 046417 205 VVRVGGAR-SKGVLDWLVPCLVEFL-CCDDWATRKAAAEVLGKVAVF 249 (595)
Q Consensus 205 lA~a~g~~-~~~yl~~lmp~L~e~L-~~dDW~~RkaAaEaLgsIA~a 249 (595)
+...+.-. ...++..+.|++..+. .++|-.+--.|-|||.++-..
T Consensus 644 vvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 644 VLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 77654322 2334455677777764 567778888889998876543
No 89
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.05 E-value=0.032 Score=50.23 Aligned_cols=59 Identities=14% Similarity=0.285 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC
Q 046417 71 SPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK 131 (595)
Q Consensus 71 p~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~ 131 (595)
-..|+.++++++.+.+.++.++.+++|+|+.++...|..+ .+|..|+.+-..|...+..
T Consensus 29 ~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~ 87 (107)
T PF08064_consen 29 IPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDE 87 (107)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCH
Confidence 4899999999999999999999999999999999999887 7999999998999888853
No 90
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.67 Score=54.40 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=46.8
Q ss_pred cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHH
Q 046417 52 QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAAT 122 (595)
Q Consensus 52 ~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aL 122 (595)
|-..|.+|-.|.+...++-++||+.+.+|+--+=..-++ +=++++-.|-..|.|.+|.|-.+++.|.
T Consensus 138 p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e----~k~qL~e~I~~LLaD~splVvgsAv~AF 204 (968)
T KOG1060|consen 138 PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE----QKDQLEEVIKKLLADRSPLVVGSAVMAF 204 (968)
T ss_pred hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh----hHHHHHHHHHHHhcCCCCcchhHHHHHH
Confidence 334677788888877777788888888886655444333 2236666777778888888877777663
No 91
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.36 Score=58.09 Aligned_cols=209 Identities=15% Similarity=0.137 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHcc----ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC--Ccchh-ccHHHHHHH
Q 046417 73 VRKQCVNLLTLLSRSHG----DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK--PSFSV-LSKPLIELI 145 (595)
Q Consensus 73 vRKaaI~lLG~lAEg~g----d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~~-~l~PLi~aL 145 (595)
.|......+..+..... +.+..-+..|+. ..+.+|+ .+|+++.++++.++.-+.+ +.+.. ++.-.+..+
T Consensus 651 mr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~---~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~ 726 (1133)
T KOG1943|consen 651 MRQATLKFIEQLSLSKDRLFQDFVIENWQMLLA---QNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRL 726 (1133)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH---HhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHh
Confidence 34444444444444443 344443444443 3346777 8999999999999965432 22222 223334444
Q ss_pred hhcCChhHHHHHHHHHHHHHhcCCCch--HHHHHHHHHHHHHhhccC-chhHHHHHHHHHHHHHHhhc-----ccCcCcH
Q 046417 146 LVEQDVNSQVGGAMCLAAAIDAAPNPE--VEQLRKLLPRLGKAVRIE-GFKAKAAVLGVIGSVVRVGG-----ARSKGVL 217 (595)
Q Consensus 146 l~d~nk~VQ~~AA~cLaaviE~a~d~~--~~~L~~Ll~rL~klL~~~-~~kaK~alLsAIgSlA~a~g-----~~~~~yl 217 (595)
-...+..+-.+-.++ .+..+... .++-+.+|..++..+-.. ...++.+.+.++..+....+ ..+..|+
T Consensus 727 ~~~~~~~~r~g~~la----l~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~ 802 (1133)
T KOG1943|consen 727 TKCSEERIRRGLILA----LGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFR 802 (1133)
T ss_pred cCchHHHHHHHHHHH----HccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 212233333333333 34443222 245566777777766555 66677777777776665433 2346777
Q ss_pred HhHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHh--HHhHHHH-HHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417 218 DWLVPCLVEFLCCD----DWATRKAAAEVLGKVAVFD--KDLATEY-KRSCLAALETRRFDKVKIVRETMNRSLEMWKE 289 (595)
Q Consensus 218 ~~lmp~L~e~L~~d----DW~~RkaAaEaLgsIA~av--ge~f~py-~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~ 289 (595)
+.++.+|.+|..|. --.+|++|.-+|..+-..+ ++++.+. ...++..+-.--+|||.-.|+-+..+++.+.-
T Consensus 803 e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~ 881 (1133)
T KOG1943|consen 803 ETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVV 881 (1133)
T ss_pred HHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceee
Confidence 88888888887753 2457999999999998765 4666665 46677767777789998889998888876543
No 92
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.96 E-value=0.23 Score=59.07 Aligned_cols=187 Identities=13% Similarity=0.124 Sum_probs=139.8
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc-C--CcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch
Q 046417 96 LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT-K--PSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE 172 (595)
Q Consensus 96 LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~-~--~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~ 172 (595)
+++|-+.+...+-|++.-=|..+...|...-+.-. . +....++..++...+-|.|.+|-.-|+.||..+.-......
T Consensus 251 ~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~ 330 (815)
T KOG1820|consen 251 LSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF 330 (815)
T ss_pred hhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence 56777788888889999999888888776665432 1 11123666677776668888888888999999888887777
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-
Q 046417 173 VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK- 251 (595)
Q Consensus 173 ~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg- 251 (595)
.+|...+.|.|+..+....-.++.+++.++-++..+ --+...++.+.+++.+..-+.|......+...-.-.+
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 789999999999999988888888888777776642 2246778999999999888888887777777666554
Q ss_pred -----HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCC
Q 046417 252 -----DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPG 292 (595)
Q Consensus 252 -----e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~ 292 (595)
+......+.|+..-. |+-+.||.++.+++-....+-|
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~----D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHIN----DTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred cCcchhhHHHHhHHHhhhcc----CCcHHHHHHHHHHHHHHHHHhh
Confidence 223333455555554 8899999999999887766544
No 93
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.96 E-value=0.018 Score=62.52 Aligned_cols=130 Identities=12% Similarity=0.187 Sum_probs=81.4
Q ss_pred CCCChHHHHHHHH-HHHHHhCCcCcHHHHHHhhhhc------CCCCChHHHHHHHHHHHHHHHHcc---ccc---hh--h
Q 046417 31 ADRDTLPVATAEL-ESIARTLTQDSFSSFLNCLQTT------DSSSKSPVRKQCVNLLTLLSRSHG---DSL---SP--H 95 (595)
Q Consensus 31 ~DrDT~r~A~~~L-D~lA~~L~~~~lp~fL~~L~d~------~ss~kp~vRKaaI~lLG~lAEg~g---d~I---~P--h 95 (595)
+|-+|.|.|+..| ..+++..+....+.++.++... ..+.+|..+.+|+.++|.+|.-.. .++ .+ .
T Consensus 222 sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 222 SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 5777877766555 6799888765566665555543 245679999999999999997662 111 11 1
Q ss_pred HHHH-HHHHHhhcc---CCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHH
Q 046417 96 LSKM-ISTVSCRLR---DPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCL 161 (595)
Q Consensus 96 LpkI-L~~IvrrLk---D~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cL 161 (595)
+... -.+|+.-|+ ...|.+|..|++.+..+...+.++....+++.|+..| ++.+..|..-||.|+
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L-~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHL-QSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHT-TSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh-CCCCcchhhhhhhhC
Confidence 1222 223334455 4567789999999999999885433334666677776 778888999998875
No 94
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.89 E-value=0.13 Score=60.41 Aligned_cols=149 Identities=12% Similarity=0.181 Sum_probs=95.5
Q ss_pred HHHHHHHHhCCc-CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHH
Q 046417 41 AELESIARTLTQ-DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACV 119 (595)
Q Consensus 41 ~~LD~lA~~L~~-~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~ 119 (595)
++++.+..++.. +.++-+++-+.-...+-+...||=+..=+-..++++++.+. -.+.++.+-|+||++.+|..|.
T Consensus 38 dAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l----LavNti~kDl~d~N~~iR~~Al 113 (757)
T COG5096 38 DAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL----LAVNTIQKDLQDPNEEIRGFAL 113 (757)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHhhccCCCHHHHHHHH
Confidence 445555555432 22665555554444466788888888888889998884321 2366888889999999999888
Q ss_pred HHHHHhhhhhcCCcch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-H-HHHHHHHhhccCchhHHH
Q 046417 120 AATTAMSLNITKPSFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-K-LLPRLGKAVRIEGFKAKA 196 (595)
Q Consensus 120 ~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~-Ll~rL~klL~~~~~kaK~ 196 (595)
.+|+.+-.. .+. .++.|+...+ ++.+++|-..||+|+.++-+--++ +.+ . ++..+..++.+.+..|++
T Consensus 114 R~ls~l~~~----el~~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~----l~~~~g~~~~l~~l~~D~dP~Vi~ 184 (757)
T COG5096 114 RTLSLLRVK----ELLGNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKD----LYHELGLIDILKELVADSDPIVIA 184 (757)
T ss_pred HHHHhcChH----HHHHHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHh----hhhcccHHHHHHHHhhCCCchHHH
Confidence 888776542 111 2666666666 788889999999998887754322 222 2 344444555555555555
Q ss_pred HHHHHH
Q 046417 197 AVLGVI 202 (595)
Q Consensus 197 alLsAI 202 (595)
.++.++
T Consensus 185 nAl~sl 190 (757)
T COG5096 185 NALASL 190 (757)
T ss_pred HHHHHH
Confidence 444333
No 95
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=0.46 Score=55.44 Aligned_cols=190 Identities=14% Similarity=0.145 Sum_probs=115.7
Q ss_pred cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHH-----------HHH
Q 046417 52 QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSA-----------CVA 120 (595)
Q Consensus 52 ~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~A-----------c~~ 120 (595)
|+.+.+|++.|.+.+++..+++||.||.+++.|=.. .+.+.|--|.|+...+-+=+||.- -|.| |..
T Consensus 129 ~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~e~DpsC-kRNAFi~L~~~D~ErAl~ 206 (948)
T KOG1058|consen 129 PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLTEQDPSC-KRNAFLMLFTTDPERALN 206 (948)
T ss_pred HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHhccCchh-HHHHHHHHHhcCHHHHHH
Confidence 677999999999999999999999999998887776 577888888998887766666531 1222 222
Q ss_pred HHHHhhhhhcC-------------------Cc-ch-hccHHHHHHHhh----------------cCChhHHHHHHHHHHH
Q 046417 121 ATTAMSLNITK-------------------PS-FS-VLSKPLIELILV----------------EQDVNSQVGGAMCLAA 163 (595)
Q Consensus 121 aLg~LA~~l~~-------------------~~-~~-~~l~PLi~aLl~----------------d~nk~VQ~~AA~cLaa 163 (595)
.|+.-...+.. .| +. .|++-++..|.. .+++.+-.+||.|+-.
T Consensus 207 Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~ 286 (948)
T KOG1058|consen 207 YLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYID 286 (948)
T ss_pred HHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHH
Confidence 22211111110 01 00 144545555532 3456667788888666
Q ss_pred HHhcCCCc----h------------HHHHHHHHHHHHHhhccCchhHHHH------------------------------
Q 046417 164 AIDAAPNP----E------------VEQLRKLLPRLGKAVRIEGFKAKAA------------------------------ 197 (595)
Q Consensus 164 viE~a~d~----~------------~~~L~~Ll~rL~klL~~~~~kaK~a------------------------------ 197 (595)
+++..++- + ...++.|.--++.+|..+++.++.-
T Consensus 287 l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~ 366 (948)
T KOG1058|consen 287 LLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHN 366 (948)
T ss_pred HHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccc
Confidence 65543221 1 1134455555566665555444333
Q ss_pred ------------HHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 046417 198 ------------VLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD 250 (595)
Q Consensus 198 ------------lLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av 250 (595)
++.+|.+.| ..|+.+...++|.|.+|+.|.+- ++|.+.|..|-.++
T Consensus 367 ~e~d~~~~yRqlLiktih~ca----v~Fp~~aatvV~~ll~fisD~N~---~aas~vl~FvrE~i 424 (948)
T KOG1058|consen 367 EESDDNGKYRQLLIKTIHACA----VKFPEVAATVVSLLLDFISDSNE---AAASDVLMFVREAI 424 (948)
T ss_pred cccccchHHHHHHHHHHHHHh----hcChHHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHH
Confidence 333333322 35788888899999999988763 46777777766655
No 96
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.78 E-value=0.53 Score=53.66 Aligned_cols=181 Identities=11% Similarity=0.146 Sum_probs=105.5
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh-hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP-HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS 133 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P-hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~ 133 (595)
+..|.+.|.+-.++---.+--++.+++-.+++-. +.+ .+...+..+--.|+-+....|-++...|.+||.... .
T Consensus 262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P--~ 336 (898)
T COG5240 262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN---VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP--Q 336 (898)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC--c
Confidence 5566666665544322466777888877666644 433 456677788888999999999999999999998663 2
Q ss_pred chhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccC
Q 046417 134 FSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS 213 (595)
Q Consensus 134 ~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~ 213 (595)
.+..+.|=++.|..+.|+.+. -+|+..++-.-.+.-+..|-.+++.++.=. +++|+ -.+++||.++.- .|
T Consensus 337 kv~vcN~evEsLIsd~Nr~Is---tyAITtLLKTGt~e~idrLv~~I~sfvhD~-SD~FK--iI~ida~rsLsl----~F 406 (898)
T COG5240 337 KVSVCNKEVESLISDENRTIS---TYAITTLLKTGTEETIDRLVNLIPSFVHDM-SDGFK--IIAIDALRSLSL----LF 406 (898)
T ss_pred eeeecChhHHHHhhcccccch---HHHHHHHHHcCchhhHHHHHHHHHHHHHhh-ccCce--EEeHHHHHHHHh----hC
Confidence 335788999999888888754 455555554422322223333333333322 23443 355677776662 22
Q ss_pred cCcHHhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHh
Q 046417 214 KGVLDWLVPCLVEFLC-CDDWATRKAAAEVLGKVAVFD 250 (595)
Q Consensus 214 ~~yl~~lmp~L~e~L~-~dDW~~RkaAaEaLgsIA~av 250 (595)
+.--...+..|...|- ...+.-++++.|+|..+....
T Consensus 407 p~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~ 444 (898)
T COG5240 407 PSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEND 444 (898)
T ss_pred cHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhC
Confidence 2211222233333332 234555666666666655544
No 97
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=1.1 Score=53.12 Aligned_cols=226 Identities=12% Similarity=0.076 Sum_probs=141.5
Q ss_pred HHHHHHhhhcCCCC--hHHHHHHHHHHHHHhCCcCc---HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh
Q 046417 21 QRVITCLNKLADRD--TLPVATAELESIARTLTQDS---FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH 95 (595)
Q Consensus 21 ~rvl~~L~KL~DrD--T~r~A~~~LD~lA~~L~~~~---lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph 95 (595)
.+.-.+++.+.|.. +...|+..|..++++=.+.. ..-+|....++..+.++++=-.||+.+..++|.+++.|.|
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~- 805 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILP- 805 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHH-
Confidence 34555667776655 66679999999888532211 3345555566666678999999999999999999998877
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhh---cCChhHHHHHHHHHHHHHhcCCCc
Q 046417 96 LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILV---EQDVNSQVGGAMCLAAAIDAAPNP 171 (595)
Q Consensus 96 LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~---d~nk~VQ~~AA~cLaaviE~a~d~ 171 (595)
.+..+....=+-+.+.-|--.=+++++++.... +.. .|..+|+...+. +++-..-+.++..|..++.-..-.
T Consensus 806 --dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G--el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 806 --DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALG--ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred --HHHHHHHhcccCCCccceehHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 455555444333322222222266666666553 222 266677766543 444333555555566667664333
Q ss_pred hHHHHHHHHHHHHHhhccC-chhHHHHHHHHHHHHHHhhcccCcCcH----HhHHHHHHHhcc-CCCHHHHHHHHHHHHH
Q 046417 172 EVEQLRKLLPRLGKAVRIE-GFKAKAAVLGVIGSVVRVGGARSKGVL----DWLVPCLVEFLC-CDDWATRKAAAEVLGK 245 (595)
Q Consensus 172 ~~~~L~~Ll~rL~klL~~~-~~kaK~alLsAIgSlA~a~g~~~~~yl----~~lmp~L~e~L~-~dDW~~RkaAaEaLgs 245 (595)
.-..+.++...+..+.... .+.+|-+++..|..+-..-|....|++ -.+...+..+.. ++|-.+|..|..||-.
T Consensus 882 vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 882 VSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred hhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 3346777777777777654 777888888888877765454333422 223333334433 5666889999999998
Q ss_pred HHHHhH
Q 046417 246 VAVFDK 251 (595)
Q Consensus 246 IA~avg 251 (595)
|-.++.
T Consensus 962 i~a~l~ 967 (982)
T KOG4653|consen 962 IQAALE 967 (982)
T ss_pred HHHHHH
Confidence 877765
No 98
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.11 Score=55.03 Aligned_cols=169 Identities=14% Similarity=0.144 Sum_probs=119.4
Q ss_pred HHHHHhhhcCCCChHHH--HHHHHHHHHHhCCcCc----HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh
Q 046417 22 RVITCLNKLADRDTLPV--ATAELESIARTLTQDS----FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH 95 (595)
Q Consensus 22 rvl~~L~KL~DrDT~r~--A~~~LD~lA~~L~~~~----lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph 95 (595)
-+.+.|.+|++.|...- ++..|..++.-= ++. +...+-.|.....+..+.+=|++|..++.|.+...+.|...
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh-~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFH-PESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888774433 555555555432 233 22233333444677889999999999999999999999888
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch--H
Q 046417 96 LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE--V 173 (595)
Q Consensus 96 LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~--~ 173 (595)
|..++-.+..+-.+..--||+++-.+|-.|..+...+ .++.-|+..+ ...++.+-..+|.|+-..+.-.+... .
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~---~~L~~L~~~~-~~~n~r~r~~a~~~~~~~v~rl~v~~~~~ 243 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ---KLLRKLIPIL-QHSNPRVRAKAALCFSRCVIRLGVLPVLL 243 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH---HHHHHHHHHH-hhhchhhhhhhhccccccceeccccchhh
Confidence 8888888888887788889999999999999987421 2555566666 67888899999999888887754222 3
Q ss_pred HHHHHHHHHHHHhhccCchhHH
Q 046417 174 EQLRKLLPRLGKAVRIEGFKAK 195 (595)
Q Consensus 174 ~~L~~Ll~rL~klL~~~~~kaK 195 (595)
++..++.+.+..-+.+..+..+
T Consensus 244 ~~~~dl~~a~~~~~~d~Lp~~~ 265 (334)
T KOG2933|consen 244 QGSCDLSRAAQEQGSDKLPELR 265 (334)
T ss_pred HhHHHHHHHHHhhhcccccccc
Confidence 4555666666555555544433
No 99
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.59 E-value=0.46 Score=52.91 Aligned_cols=221 Identities=11% Similarity=0.126 Sum_probs=125.8
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCC-ChhHHHHHHHHHHHhhhhhcCC-
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDP-DSSVRSACVAATTAMSLNITKP- 132 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~-ds~VR~Ac~~aLg~LA~~l~~~- 132 (595)
+..++..|....+..+...=|..+|.+.++-++........|.+++..+..-.+.| +|..-.=+-+++|.+.++.++.
T Consensus 28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~ 107 (435)
T PF03378_consen 28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEAD 107 (435)
T ss_dssp HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCC
Confidence 44555555443345567888888888888777776555555555555555555555 6888999999999999987742
Q ss_pred cc-----hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHH
Q 046417 133 SF-----SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP-NPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVV 206 (595)
Q Consensus 133 ~~-----~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~-d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA 206 (595)
+. ...+-|.|..++.+.-.-..--..--|+-++|..+ ..+.+....|.+.|+.---|....--++++-.+.++.
T Consensus 108 ~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i 187 (435)
T PF03378_consen 108 PEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYI 187 (435)
T ss_dssp HH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHH
Confidence 22 22344444444442211111122223566677754 3333445556666555554543333367788888877
Q ss_pred HhhcccC--cCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-HhHHHHHHHHHHH----HHhccCCchHHHHHH
Q 046417 207 RVGGARS--KGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DLATEYKRSCLAA----LETRRFDKVKIVRET 279 (595)
Q Consensus 207 ~a~g~~~--~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~f~py~~~~I~~----Le~crfDKVK~VRda 279 (595)
..+...+ .+.++.++...+..+.+..-. -.+++.|.+|-..+. +.+.+|...++.+ |.+.|-+ |.||.-
T Consensus 188 ~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~--kf~~~f 263 (435)
T PF03378_consen 188 KKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTE--KFVKRF 263 (435)
T ss_dssp HHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--H--HHHHHH
T ss_pred HhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcH--HHHHHH
Confidence 7554432 467788888888888653111 238899999999885 6788887766655 4444444 344443
No 100
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=1.5 Score=51.94 Aligned_cols=195 Identities=13% Similarity=0.121 Sum_probs=139.5
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF 134 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~ 134 (595)
+.++=..|.. ..++-++.|-+++.-|.-+.|--...-.-+..+++...+..|+|-|+-|.--|..++..|++...+
T Consensus 726 ~e~~qeai~s-l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--- 801 (982)
T KOG4653|consen 726 IEPLQEAISS-LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--- 801 (982)
T ss_pred HHHHHHHHHH-hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch---
Confidence 3334444443 344568999999999999999553333445679999999999999999999999999999987632
Q ss_pred hhccHHHHHHHhhcCChh-----HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh
Q 046417 135 SVLSKPLIELILVEQDVN-----SQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG 209 (595)
Q Consensus 135 ~~~l~PLi~aLl~d~nk~-----VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~ 209 (595)
.+++-|.+.=....++. .-+| -|+-++++..++....|...|...+++-.+.|.-.-|+..++.+|-+-+.-
T Consensus 802 -~il~dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 802 -DILPDLSEEYLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred -hhHHHHHHHHHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence 24555555332333322 2334 556788888888888899999999999999887667778888888777643
Q ss_pred cccCcCcHHhHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhHHhHHH
Q 046417 210 GARSKGVLDWLVPCLVEFL-CCDDWATRKAAAEVLGKVAVFDKDLATE 256 (595)
Q Consensus 210 g~~~~~yl~~lmp~L~e~L-~~dDW~~RkaAaEaLgsIA~avge~f~p 256 (595)
.-....+|-.++..+.... .++.-.+|.+|+..|..+-...|.-+.|
T Consensus 879 a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLp 926 (982)
T KOG4653|consen 879 AFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLP 926 (982)
T ss_pred hhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHH
Confidence 2111124555566666555 3778899999999999998888865555
No 101
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=3.3 Score=48.70 Aligned_cols=232 Identities=14% Similarity=0.126 Sum_probs=140.5
Q ss_pred HHHHHHhhhhcCCC----CChHHHHHHHHHHHHHHHHccccchh---hHHH-HHHHHHhhccCCChhHHHHHHHHHHHhh
Q 046417 55 FSSFLNCLQTTDSS----SKSPVRKQCVNLLTLLSRSHGDSLSP---HLSK-MISTVSCRLRDPDSSVRSACVAATTAMS 126 (595)
Q Consensus 55 lp~fL~~L~d~~ss----~kp~vRKaaI~lLG~lAEg~gd~I~P---hLpk-IL~~IvrrLkD~ds~VR~Ac~~aLg~LA 126 (595)
++.+++.|.++..+ +++...+.|++.|+.+-. .-+...| -+.. |+++++..++++---++.-+|+.+..+.
T Consensus 410 Lsf~~sil~qsaa~psn~dnarq~egalr~lasi~s-~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~e 488 (970)
T COG5656 410 LSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS-FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIE 488 (970)
T ss_pred HHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH-HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHH
Confidence 44444444343322 457888999999988887 3333333 3444 3678888899998889999999999997
Q ss_pred hhhcCCcchh-ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 046417 127 LNITKPSFSV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAA--PNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIG 203 (595)
Q Consensus 127 ~~l~~~~~~~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a--~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIg 203 (595)
....+..... .+......| .++.-.|++-||+||.-++-+. .+..-.+++..|++|+.+- +.|..- .+-.++-
T Consensus 489 eDfkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLS--n~feiD-~LS~vMe 564 (970)
T COG5656 489 EDFKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLS--NTFEID-PLSMVME 564 (970)
T ss_pred HhcccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhc--ccccch-HHHHHHH
Confidence 7775432111 444444555 4577789999999999998763 3444578888999988887 333311 1223333
Q ss_pred HHHHhhcccCcCcHHhHHHHHHHh--------ccCC-------CHHHHHHHHHHHHHHHHHhH-----------------
Q 046417 204 SVVRVGGARSKGVLDWLVPCLVEF--------LCCD-------DWATRKAAAEVLGKVAVFDK----------------- 251 (595)
Q Consensus 204 SlA~a~g~~~~~yl~~lmp~L~e~--------L~~d-------DW~~RkaAaEaLgsIA~avg----------------- 251 (595)
+++..-.....||...++..|.+. +..+ | ..-.+|.-.|.++-+.+-
T Consensus 565 ~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vD-DKqmaasGiL~T~~smiLSlen~p~vLk~le~sly 643 (970)
T COG5656 565 SFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVD-DKQMAASGILRTIESMILSLENRPLVLKYLEVSLY 643 (970)
T ss_pred HHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCcccccccc-HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 333322233468888888877762 1111 2 334455555555544331
Q ss_pred --------HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417 252 --------DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 252 --------e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~ 293 (595)
+....|-.+|+.+++.|-|= .|.+--+|.--.+++.+++..
T Consensus 644 pvi~Filkn~i~dfy~Ea~dildg~tf~-skeI~pimwgi~Ell~~~l~~ 692 (970)
T COG5656 644 PVISFILKNEISDFYQEALDILDGYTFM-SKEIEPIMWGIFELLLNLLID 692 (970)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhhHH-HHHhhhhhhHHHHHHHhcccc
Confidence 11233446788888888442 244445666666666666655
No 102
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=4.1 Score=48.66 Aligned_cols=268 Identities=17% Similarity=0.175 Sum_probs=161.2
Q ss_pred HHHHHHHHHhhh--cC--CCChHHHHHHHHHHHHHhCC--cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcccc
Q 046417 18 DLKQRVITCLNK--LA--DRDTLPVATAELESIARTLT--QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDS 91 (595)
Q Consensus 18 ~lk~rvl~~L~K--L~--DrDT~r~A~~~LD~lA~~L~--~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~ 91 (595)
.|-.|+++-... ++ .-+..+.+...+..++.-|. |-.|++.|+.|.+... ++..-.+++.-+-.+||.|.+.
T Consensus 504 ~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~~ 581 (982)
T KOG2022|consen 504 TWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLH--NSKESEQAISTLKTLCETCPES 581 (982)
T ss_pred HHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhhh
Confidence 344555554433 34 56788899999999998885 4447777887777653 3455567888899999999999
Q ss_pred chhhHHHHHHHHHhhccCCC--hhHHHHHHHHHHHhhhhhcCCcch-----hccHHHHHHHhhc-----CChh------H
Q 046417 92 LSPHLSKMISTVSCRLRDPD--SSVRSACVAATTAMSLNITKPSFS-----VLSKPLIELILVE-----QDVN------S 153 (595)
Q Consensus 92 I~PhLpkIL~~IvrrLkD~d--s~VR~Ac~~aLg~LA~~l~~~~~~-----~~l~PLi~aLl~d-----~nk~------V 153 (595)
+.||+..++.+.-..+.-.. .++|.....++|-+-..+. ++++ .++.|++..|-.. +++. .
T Consensus 582 L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~-pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~ 660 (982)
T KOG2022|consen 582 LDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLK-PEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAF 660 (982)
T ss_pred CchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhcc-HHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 99999999998887775532 4578888888888776663 2222 2566666666211 1111 2
Q ss_pred HHHHHHHHHHHHhcC-----CC------------chHHHHHHHHHHHHHhhccCchhHH-HHHHHHHHHHHHhh----cc
Q 046417 154 QVGGAMCLAAAIDAA-----PN------------PEVEQLRKLLPRLGKAVRIEGFKAK-AAVLGVIGSVVRVG----GA 211 (595)
Q Consensus 154 Q~~AA~cLaaviE~a-----~d------------~~~~~L~~Ll~rL~klL~~~~~kaK-~alLsAIgSlA~a~----g~ 211 (595)
|..+..+|..-..+. .+ +++..+.+++|-|-+.+..- ++ ..+++++..+...| +.
T Consensus 661 ~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~---~~~s~vve~~C~i~~~~v~~~~~ 737 (982)
T KOG2022|consen 661 QLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMW---LGLSDVVEASCIIMVKGVRSLLT 737 (982)
T ss_pred HHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHH---hcchhHHHHHHHHHHhccccccc
Confidence 344444444432221 01 23456677888777777411 11 34455555555443 22
Q ss_pred cC-cCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-------hHH----hHHHHHHHHHHHHHhccC-CchHHHHH
Q 046417 212 RS-KGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF-------DKD----LATEYKRSCLAALETRRF-DKVKIVRE 278 (595)
Q Consensus 212 ~~-~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a-------vge----~f~py~~~~I~~Le~crf-DKVK~VRd 278 (595)
.| .|+++.+++.+..+.+...- ++..+++.+.. +++ .|.......+.+++.--| +-+-.+-.
T Consensus 738 sF~~p~l~~l~~Fi~r~~~~~~a-----~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~ 812 (982)
T KOG2022|consen 738 SFPEPMLPSLCPFIVRFLTSCLA-----VTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQ 812 (982)
T ss_pred cchhhhHHHHHHHHHHhccchHH-----HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHH
Confidence 35 66677777777776655432 22223322221 122 344455667777887653 33444444
Q ss_pred HHHHHHHHhHhcCCCCCC
Q 046417 279 TMNRSLEMWKEVPGVCEE 296 (595)
Q Consensus 279 a~~~aL~~~K~i~~~~~~ 296 (595)
-+---=+.||.+|+--++
T Consensus 813 ~~~~v~~ilkk~P~~~~~ 830 (982)
T KOG2022|consen 813 LIGFVRQILKKIPKFLEP 830 (982)
T ss_pred HHHHHHHHHHhCcCcccc
Confidence 444445788999977543
No 103
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.29 E-value=0.24 Score=49.01 Aligned_cols=137 Identities=21% Similarity=0.193 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhhhhhcCC----------cch-----hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch------
Q 046417 114 VRSACVAATTAMSLNITKP----------SFS-----VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE------ 172 (595)
Q Consensus 114 VR~Ac~~aLg~LA~~l~~~----------~~~-----~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~------ 172 (595)
||.++...|..++..+... |.. ..-.+|+..++.|.++.+..+|+.+|+.++|+.....
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 7888998988888775331 111 1445677788789999999999999999998842110
Q ss_pred --------------HHHHHHHHHHHHHhhccC-chhHHHHHHHHHHHHHHhh--cccCcCcHHhHHHHHHHhccCCCHHH
Q 046417 173 --------------VEQLRKLLPRLGKAVRIE-GFKAKAAVLGVIGSVVRVG--GARSKGVLDWLVPCLVEFLCCDDWAT 235 (595)
Q Consensus 173 --------------~~~L~~Ll~rL~klL~~~-~~kaK~alLsAIgSlA~a~--g~~~~~yl~~lmp~L~e~L~~dDW~~ 235 (595)
..++..+=..|..+|..+ +..+-.+++-+++.++++- ...-.+++..++..+..++.+.|-.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 012223334444555554 5556678888888888753 22235778888999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 046417 236 RKAAAEVLGKVAVFD 250 (595)
Q Consensus 236 RkaAaEaLgsIA~av 250 (595)
|.+++-||+.+..+.
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999987653
No 104
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.23 E-value=0.42 Score=49.53 Aligned_cols=180 Identities=13% Similarity=0.131 Sum_probs=117.7
Q ss_pred HHHHhhccC-CChhHHHHHHHHHHHhhhhhcCCcch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCC--chHHH
Q 046417 101 STVSCRLRD-PDSSVRSACVAATTAMSLNITKPSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPN--PEVEQ 175 (595)
Q Consensus 101 ~~IvrrLkD-~ds~VR~Ac~~aLg~LA~~l~~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d--~~~~~ 175 (595)
..++..|+. .||.+++.+..++|..+.+-..+..+ .=..+++..|+.++++.++..|..||+.+-.+... .+..|
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 344445554 57899999999999988764333222 13456777777889999999999999876544322 22357
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHH---HhHH
Q 046417 176 LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAV---FDKD 252 (595)
Q Consensus 176 L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~---avge 252 (595)
+.++|..+... .-+..++.+.+.++..+.. ...++..+...+|.|.+.|...+-.+|.-++.+|..++. ..++
T Consensus 95 i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv--~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~ 170 (254)
T PF04826_consen 95 IPQVCEETVSS--PLNSEVQLAGLRLLTNLTV--TNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRE 170 (254)
T ss_pred HHHHHHHHhcC--CCCCHHHHHHHHHHHccCC--CcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHH
Confidence 77777765442 1144556677777776642 222345566778889999988888899999999999976 2345
Q ss_pred hHHHHH-HHHHHHHHhccCCchHHHHHHHHHHHHHhHhc
Q 046417 253 LATEYK-RSCLAALETRRFDKVKIVRETMNRSLEMWKEV 290 (595)
Q Consensus 253 ~f~py~-~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i 290 (595)
.+..-. ..++..|+.+ .=++...++|-....|
T Consensus 171 Ll~~q~~~~~~~Lf~~~------~~~~~l~~~l~~~~ni 203 (254)
T PF04826_consen 171 LLSAQVLSSFLSLFNSS------ESKENLLRVLTFFENI 203 (254)
T ss_pred HHhccchhHHHHHHccC------CccHHHHHHHHHHHHH
Confidence 554432 4556666633 3455666666666665
No 105
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.16 E-value=0.15 Score=60.29 Aligned_cols=178 Identities=13% Similarity=0.163 Sum_probs=118.2
Q ss_pred hHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCC--------------------cCcHHHHHHhhhhcCCCCChHHHHH
Q 046417 17 NDLKQRVITCLNKLADRDTLPVATAELESIARTLT--------------------QDSFSSFLNCLQTTDSSSKSPVRKQ 76 (595)
Q Consensus 17 ~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~--------------------~~~lp~fL~~L~d~~ss~kp~vRKa 76 (595)
.++-.+++.+| ++..+-..|+..++.+...-+ .+.+|.+++.+.. ....+|-.
T Consensus 814 ~~ia~klld~L---s~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t----~~~~~K~~ 886 (1030)
T KOG1967|consen 814 SEIAEKLLDLL---SGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFET----APGSQKHN 886 (1030)
T ss_pred chHHHHHHHhc---CCccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhcc----CCccchhH
Confidence 35566666554 456666777777776655432 1224444555542 22334444
Q ss_pred HHHHHHHHHHHcc-ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh-ccHHHHHHHh---hc--C
Q 046417 77 CVNLLTLLSRSHG-DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV-LSKPLIELIL---VE--Q 149 (595)
Q Consensus 77 aI~lLG~lAEg~g-d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~aLl---~d--~ 149 (595)
-+.+|.-+-..-+ ..+.|++|.++|.+++.|.=||..||--+..++.-+-.... .... ++.-++..|+ .+ +
T Consensus 887 yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~--tL~t~~~~Tlvp~lLsls~~~~n 964 (1030)
T KOG1967|consen 887 YLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE--TLQTEHLSTLVPYLLSLSSDNDN 964 (1030)
T ss_pred HHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc--ccchHHHhHHHHHHHhcCCCCCc
Confidence 4455544444444 77799999999999999999999999888777655554331 2221 3444444443 23 2
Q ss_pred C-hhHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 046417 150 D-VNSQVGGAMCLAAAIDAAPNP-EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIG 203 (595)
Q Consensus 150 n-k~VQ~~AA~cLaaviE~a~d~-~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIg 203 (595)
| ..|-..|--||.++.+-.+.. +.+|-++++..|.+.|+++.+.+|..++++=+
T Consensus 965 ~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 965 NMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred chhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 2 568899999999999976544 36888999999999999999999988776644
No 106
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=1.2 Score=55.64 Aligned_cols=218 Identities=18% Similarity=0.147 Sum_probs=142.4
Q ss_pred CChhHHHHHHHHHhhhcCCCC--hHHHHHHHHHHHHHhCCcCcHH----HHHHhhhhcCCCCChHHHHHHHHHHHHHHHH
Q 046417 14 PSTNDLKQRVITCLNKLADRD--TLPVATAELESIARTLTQDSFS----SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRS 87 (595)
Q Consensus 14 ~~~~~lk~rvl~~L~KL~DrD--T~r~A~~~LD~lA~~L~~~~lp----~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg 87 (595)
+...++...+..++-||+=|| |.--|+++|-.+......+.+- .+.-.+.+..-+++..+|......+..+...
T Consensus 34 ~~~~~~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~ 113 (1312)
T KOG0803|consen 34 PFVLELDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTK 113 (1312)
T ss_pred hHHhccCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 334568889999999999888 6777999999999988755533 3334445555677889999999999999999
Q ss_pred ccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhh-------------------
Q 046417 88 HGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILV------------------- 147 (595)
Q Consensus 88 ~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~------------------- 147 (595)
+.+.++|||..+||...-...|.+..|..|+-.+.-.....- +.+.. .++.|-+..+..
T Consensus 114 lkk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~e-k~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~ 192 (1312)
T KOG0803|consen 114 LKKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEE-KDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSS 192 (1312)
T ss_pred HHHHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChh-hhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcch
Confidence 999999999999999999999999999888877754333200 01111 133332222210
Q ss_pred ----cCChhHHHHHHHHHHHHHh-cCCCchHH---H-HHH--HHHHHHHhhccCchhHHHHHHHHHHHHHHhhccc-CcC
Q 046417 148 ----EQDVNSQVGGAMCLAAAID-AAPNPEVE---Q-LRK--LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR-SKG 215 (595)
Q Consensus 148 ----d~nk~VQ~~AA~cLaaviE-~a~d~~~~---~-L~~--Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~-~~~ 215 (595)
..-+.|-..+-.+|.++.- ...+.... . +.. --..+-++++++.-.++.++++.+-++.+..... .++
T Consensus 193 Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~ 272 (1312)
T KOG0803|consen 193 EELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMES 272 (1312)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchh
Confidence 1123345566666777763 33322211 1 222 2367778888888788889898888887643322 222
Q ss_pred cHHhHHHHHHHhccCCC
Q 046417 216 VLDWLVPCLVEFLCCDD 232 (595)
Q Consensus 216 yl~~lmp~L~e~L~~dD 232 (595)
-...+.|.+.....+.|
T Consensus 273 ~~~~l~~~~~~~~~~~d 289 (1312)
T KOG0803|consen 273 EKNYLKPVLLGSIDSLD 289 (1312)
T ss_pred hhhHhhHHHHccccccc
Confidence 22334455555544433
No 107
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.12 E-value=0.19 Score=49.68 Aligned_cols=115 Identities=13% Similarity=0.059 Sum_probs=82.8
Q ss_pred hccHHHHHHHhhcCChhHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHH---Hhhcc
Q 046417 136 VLSKPLIELILVEQDVNSQVGGAMCLAAAIDA-APNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVV---RVGGA 211 (595)
Q Consensus 136 ~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~-a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA---~a~g~ 211 (595)
.+|+-+++.|.....++ .--|..++..+++. .++.+.|.+++|+..|-++|++.+-.+..++|.++.-++ ...|.
T Consensus 38 ~~Lpif~dGL~Et~~Py-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPY-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hHHHHHHhhhhccCccH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 36666778884334444 34455556667777 777789999999999999999999999999999999884 44466
Q ss_pred cCcCcHHhHHHHHHHhccCC-------C----HHHHHHHHHHHHHHHHHhH
Q 046417 212 RSKGVLDWLVPCLVEFLCCD-------D----WATRKAAAEVLGKVAVFDK 251 (595)
Q Consensus 212 ~~~~yl~~lmp~L~e~L~~d-------D----W~~RkaAaEaLgsIA~avg 251 (595)
+..||+.+++|.+.-|.... | -..+-...|+|..+...-|
T Consensus 117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG 167 (183)
T PF10274_consen 117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGG 167 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcC
Confidence 67899999999998665422 2 2344455566666665555
No 108
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.10 E-value=1.3 Score=50.69 Aligned_cols=238 Identities=16% Similarity=0.162 Sum_probs=124.0
Q ss_pred HHHHHHHHHh-CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc---hhhHHHHHHH---------HHhh
Q 046417 40 TAELESIART-LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL---SPHLSKMIST---------VSCR 106 (595)
Q Consensus 40 ~~~LD~lA~~-L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I---~PhLpkIL~~---------Ivrr 106 (595)
+..+-.+++. ..++-+.+.++.|.....+++...|=.|++.|..+|-..+..+ .+.+..++.- |...
T Consensus 285 Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtL 364 (898)
T COG5240 285 ARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTL 364 (898)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHH
Confidence 3334444443 3566688888888888888888999999999999999888766 3444444431 1111
Q ss_pred ccCCCh-------------------hHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhc
Q 046417 107 LRDPDS-------------------SVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDA 167 (595)
Q Consensus 107 LkD~ds-------------------~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~ 167 (595)
|+-... ...-++.+|+-.|+-....+ ...++.=|...|.++..-.-...+.-|+..+++.
T Consensus 365 LKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k-~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~ 443 (898)
T COG5240 365 LKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK-KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN 443 (898)
T ss_pred HHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH-HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh
Confidence 221111 11111122222222111000 0013333444443333222223333334444444
Q ss_pred CCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 046417 168 APNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVA 247 (595)
Q Consensus 168 a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA 247 (595)
.++.- +..+..|+..+++--|. ..++..+|-+-.-|..+..| ...+-.+-..+.-++--+|.+|..||...|
T Consensus 444 ~p~sk----EraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P--~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ 515 (898)
T COG5240 444 DPDSK----ERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTP--GKYVRHIYNRLILENNIVRSAAVQALSKFA 515 (898)
T ss_pred CchHH----HHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCc--chHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 33311 22333333333222221 22223333221222111111 112233333333456689999999999999
Q ss_pred HHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417 248 VFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWK 288 (595)
Q Consensus 248 ~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K 288 (595)
....+.+.| ..+..+|.+|--|+=--|||-+.=+|..+.
T Consensus 516 ln~~d~~~~--~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 516 LNISDVVSP--QSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cCccccccH--HHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 877776664 356678999999999999999988888776
No 109
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=0.57 Score=52.44 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=51.0
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCC
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPD 111 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~d 111 (595)
+.-++..+.....+++...|.-|++.||.+++++++.+..|-+.++-.|++.|-|++
T Consensus 256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~ 312 (533)
T KOG2032|consen 256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDL 312 (533)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCC
Confidence 666777777777777779999999999999999999999999999999999999986
No 110
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=0.63 Score=54.83 Aligned_cols=235 Identities=13% Similarity=0.133 Sum_probs=142.0
Q ss_pred CCCChHHH-HHHHHHHHHHhCCcCcHHHHHHhhhhc------CCCCChHHHHHHHHHHHHHHHH-----cc----ccchh
Q 046417 31 ADRDTLPV-ATAELESIARTLTQDSFSSFLNCLQTT------DSSSKSPVRKQCVNLLTLLSRS-----HG----DSLSP 94 (595)
Q Consensus 31 ~DrDT~r~-A~~~LD~lA~~L~~~~lp~fL~~L~d~------~ss~kp~vRKaaI~lLG~lAEg-----~g----d~I~P 94 (595)
+|-||+|- |..-+.-|.+++.....+.|-..+... ..+-+|..+..+|-++..+|-- || ..+.+
T Consensus 373 sDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvd 452 (960)
T KOG1992|consen 373 SDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVD 452 (960)
T ss_pred CCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecccccc
Confidence 58888665 555557799999754455555444333 2466799899999998888754 22 11111
Q ss_pred ----hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHH---hc
Q 046417 95 ----HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAI---DA 167 (595)
Q Consensus 95 ----hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaavi---E~ 167 (595)
+...|+|.+...=-.+.|.++.++.+=+-.+=.++.++..+.+++-|+..| ......|..-||.|++++. |+
T Consensus 453 v~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L-~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 453 VVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFL-EAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred HHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHhccccccC
Confidence 122334444333223456677666544333333333222233555566665 5667789999999988864 33
Q ss_pred C------CCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc----C-CCHHHH
Q 046417 168 A------PNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC----C-DDWATR 236 (595)
Q Consensus 168 a------~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~----~-dDW~~R 236 (595)
+ +..+.|++..++..|++.++.+.-.=-..+.-||--++.....+-.|+++.+++.|.+++. + .+=+-=
T Consensus 532 ~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fn 611 (960)
T KOG1992|consen 532 SNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFN 611 (960)
T ss_pred ccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhH
Confidence 1 2334578889999999999776443335566677666666666556888999999999874 1 111222
Q ss_pred HHHHHHHHHHHHHhHH----hHHHHHHHHHHHHH
Q 046417 237 KAAAEVLGKVAVFDKD----LATEYKRSCLAALE 266 (595)
Q Consensus 237 kaAaEaLgsIA~avge----~f~py~~~~I~~Le 266 (595)
--..|.+|.+-...++ .+..+....+.+|+
T Consensus 612 HYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq 645 (960)
T KOG1992|consen 612 HYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQ 645 (960)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 3457777777665532 34555555554444
No 111
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.90 E-value=0.15 Score=44.99 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=61.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHH
Q 046417 66 DSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELI 145 (595)
Q Consensus 66 ~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aL 145 (595)
..++.+++|-+++..|.-+.+... ....+++.|+..+...|+|+|+-|--+|..+|+.|+....+ ..++-|++.-
T Consensus 12 L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~----~vl~~L~~~y 86 (92)
T PF10363_consen 12 LNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD----EVLPILLDEY 86 (92)
T ss_pred ccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----HHHHHHHHHH
Confidence 345678999999999999999888 55667899999999999999999999999999999998742 1344455444
No 112
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.78 E-value=0.098 Score=56.32 Aligned_cols=102 Identities=17% Similarity=0.214 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhhccC-------chhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc----------CCCHHHHH
Q 046417 175 QLRKLLPRLGKAVRIE-------GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC----------CDDWATRK 237 (595)
Q Consensus 175 ~L~~Ll~rL~klL~~~-------~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~----------~dDW~~Rk 237 (595)
-|+.|+|+|+..+... +...-..++.++.++..=-.....+|+-.+||.+..|+- +++|.+|.
T Consensus 207 gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd 286 (343)
T cd08050 207 GLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRD 286 (343)
T ss_pred CchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHH
Confidence 4555666665555322 222222344555655543344457999999999999972 46899999
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHH
Q 046417 238 AAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIV 276 (595)
Q Consensus 238 aAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~V 276 (595)
-|+..|+.|....+.......+.+++.|-..-+|..+++
T Consensus 287 ~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~ 325 (343)
T cd08050 287 YAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPL 325 (343)
T ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCc
Confidence 999999999998886555555666666666666776655
No 113
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.60 E-value=1.3 Score=46.40 Aligned_cols=206 Identities=20% Similarity=0.270 Sum_probs=111.3
Q ss_pred cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh-c
Q 046417 52 QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI-T 130 (595)
Q Consensus 52 ~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l-~ 130 (595)
.+.+++++.-+.+. ++.|.+|-++-.+||.+. . +.+++++-+-.+||-..||.-|.-|+.++-..- .
T Consensus 66 ~~Av~~l~~vl~de--sq~pmvRhEAaealga~~--~--------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDE--SQEPMVRHEAAEALGAIG--D--------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred chhhHHHHHHhccc--ccchHHHHHHHHHHHhhc--c--------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 44488888877764 567999999999999876 2 234455566668999999999988887775321 1
Q ss_pred CCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHH---HHHHH
Q 046417 131 KPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVI---GSVVR 207 (595)
Q Consensus 131 ~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAI---gSlA~ 207 (595)
+.. .--.|... .++.+..-.....=|...+ -+.-.+.++.. ..++.+-+...-.+-.++++-+ ++++.
T Consensus 134 ~~~--~~~~p~~S---vdPa~p~~~ssv~~lr~~l---ld~t~~l~~Ry-~amF~LRn~g~EeaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 134 DKI--ANSSPYIS---VDPAPPANLSSVHELRAEL---LDETKPLFERY-RAMFYLRNIGTEEAINALIDGLADDSALFR 204 (289)
T ss_pred ccc--cccCcccc---CCCCCccccccHHHHHHHH---HhcchhHHHHH-hhhhHhhccCcHHHHHHHHHhcccchHHHH
Confidence 110 00011111 1222110000011011111 01001111111 1111111111111111111100 11111
Q ss_pred -----hhcccCcCcHHhHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHH
Q 046417 208 -----VGGARSKGVLDWLVPCLVEFLCC--DDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETM 280 (595)
Q Consensus 208 -----a~g~~~~~yl~~lmp~L~e~L~~--dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~ 280 (595)
+-|+. --+..+|.|.+.|.+ +.--+|-.|+++||+||. +.|+++|...--|-...||++.
T Consensus 205 hEvAfVfGQl---~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc 271 (289)
T KOG0567|consen 205 HEVAFVFGQL---QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESC 271 (289)
T ss_pred HHHHHHHhhc---cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHH
Confidence 11111 114568888888864 577899999999999976 3577788888889999999999
Q ss_pred HHHHHHhHhcC
Q 046417 281 NRSLEMWKEVP 291 (595)
Q Consensus 281 ~~aL~~~K~i~ 291 (595)
.-||..+---+
T Consensus 272 ~valdm~eyen 282 (289)
T KOG0567|consen 272 EVALDMLEYEN 282 (289)
T ss_pred HHHHHHHHHhc
Confidence 99998876444
No 114
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=94.58 E-value=0.32 Score=59.37 Aligned_cols=122 Identities=20% Similarity=0.175 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-hHHhH
Q 046417 176 LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF-DKDLA 254 (595)
Q Consensus 176 L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a-vge~f 254 (595)
+-.+.|+++.++.+++.-+|-++..+|+.++..+-... +..++..+...+.+.+--.|..+++++-.+... .+-.+
T Consensus 814 ~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~---m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l 890 (1549)
T KOG0392|consen 814 LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRET---MATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGL 890 (1549)
T ss_pred hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccc
Confidence 55678999999999999899999999998887553221 222333333344444444555555555555444 45688
Q ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCCCCCCCCC
Q 046417 255 TEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGVCEEVSSP 300 (595)
Q Consensus 255 ~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~~~~~~~p 300 (595)
.||...++..|-.|-.|-.-.||+++.++...++-+.+...+.++|
T Consensus 891 ~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p 936 (1549)
T KOG0392|consen 891 VPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDP 936 (1549)
T ss_pred cccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCC
Confidence 8899888888999999999999999999999999988886555555
No 115
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=5 Score=47.08 Aligned_cols=121 Identities=14% Similarity=0.211 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhhcCCCChHHH--HHHHHHHHHHh-----CCcCc--HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc
Q 046417 18 DLKQRVITCLNKLADRDTLPV--ATAELESIART-----LTQDS--FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH 88 (595)
Q Consensus 18 ~lk~rvl~~L~KL~DrDT~r~--A~~~LD~lA~~-----L~~~~--lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~ 88 (595)
.|..+++.-|+.|=.. |..+ -.+++..++.. ++... +...++-|.....++++..|.=++.+|+-++-.|
T Consensus 252 RLgKKLieplt~li~s-T~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH 330 (877)
T KOG1059|consen 252 RLGKKLIEPITELMES-TVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH 330 (877)
T ss_pred hhhhhhhhHHHHHHHh-hHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC
Confidence 4777777777776432 2222 23444444333 43222 7777788888888889999999999999999999
Q ss_pred cccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh
Q 046417 89 GDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL 146 (595)
Q Consensus 89 gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl 146 (595)
++++.-|.. .|++.|.|-|.+||-=+.+-|-.|... +....+++-|+..+.
T Consensus 331 p~~Vqa~kd----lIlrcL~DkD~SIRlrALdLl~gmVsk---kNl~eIVk~LM~~~~ 381 (877)
T KOG1059|consen 331 PKAVQAHKD----LILRCLDDKDESIRLRALDLLYGMVSK---KNLMEIVKTLMKHVE 381 (877)
T ss_pred HHHHHHhHH----HHHHHhccCCchhHHHHHHHHHHHhhh---hhHHHHHHHHHHHHH
Confidence 999999987 778899999999998887766555431 122236666666663
No 116
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.52 E-value=1.5 Score=52.75 Aligned_cols=175 Identities=11% Similarity=0.074 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHccccchhhHHHHHHHHHhhcc------CCC--hhHHHHHHHHHHHhhhhhcCCc-ch----hccHHHH
Q 046417 76 QCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLR------DPD--SSVRSACVAATTAMSLNITKPS-FS----VLSKPLI 142 (595)
Q Consensus 76 aaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLk------D~d--s~VR~Ac~~aLg~LA~~l~~~~-~~----~~l~PLi 142 (595)
++..++-.++.--|+.. |+++|++++.-|. .+. +.--+-|..++|.+++.+.+.. +. .++.+.+
T Consensus 391 Aa~~~l~~~~~KR~ke~---l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hV 467 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKET---LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHV 467 (1010)
T ss_pred HHHHHHHHHHHhcchhh---hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHh
Confidence 67777777777776554 4588888887777 443 3446679999999998887642 11 2555544
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHhhc-cCchhHHHHHHHHHHHHHHhhcccCcCcHHhH
Q 046417 143 ELILVEQDVNSQVGGAMCLAAAIDA-APNPEVEQLRKLLPRLGKAVR-IEGFKAKAAVLGVIGSVVRVGGARSKGVLDWL 220 (595)
Q Consensus 143 ~aLl~d~nk~VQ~~AA~cLaaviE~-a~d~~~~~L~~Ll~rL~klL~-~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~l 220 (595)
.-.+..+--+.++.||.-+..+.+. -++ ...+.+++....+.|. ++...+|--+.-|+.+++.....+ ++|+...
T Consensus 468 fP~f~s~~g~Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~-~e~~~~h 544 (1010)
T KOG1991|consen 468 FPEFQSPYGYLRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA-DEKVSAH 544 (1010)
T ss_pred hHhhcCchhHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh-hhhHhhh
Confidence 4444555567889999988888854 333 3478888888888887 777778877777888888765443 3445444
Q ss_pred HHHHHHh----ccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q 046417 221 VPCLVEF----LCCDDWATRKAAAEVLGKVAVFDKDLATEYKR 259 (595)
Q Consensus 221 mp~L~e~----L~~dDW~~RkaAaEaLgsIA~avge~f~py~~ 259 (595)
+|.+.+- ...-+-. ....+|-+|..-.++-+.||+.
T Consensus 545 vp~~mq~lL~L~ne~End---~Lt~vme~iV~~fseElsPfA~ 584 (1010)
T KOG1991|consen 545 VPPIMQELLKLSNEVEND---DLTNVMEKIVCKFSEELSPFAV 584 (1010)
T ss_pred hhHHHHHHHHHHHhcchh---HHHHHHHHHHHHHHHhhchhHH
Confidence 4444333 2211100 1344555555555555566553
No 117
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.38 E-value=0.42 Score=46.04 Aligned_cols=144 Identities=11% Similarity=0.117 Sum_probs=90.7
Q ss_pred HHHHHHHHhhccCCC-hhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhc--CChhHHHHHHHHHHHHH--hcCCCc
Q 046417 97 SKMISTVSCRLRDPD-SSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVE--QDVNSQVGGAMCLAAAI--DAAPNP 171 (595)
Q Consensus 97 pkIL~~IvrrLkD~d-s~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d--~nk~VQ~~AA~cLaavi--E~a~d~ 171 (595)
|+++..+++.|+-.. ..+|..+..++|.|+.- | |-..-.... .....+.....+-.... .+....
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL--D--------P~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGAL--D--------PYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPS 78 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc--C--------cHHHhcccccCCccccccccccchhhHHhhccCCCc
Confidence 678888888877664 67999999999999851 1 111110000 00000111111111111 111112
Q ss_pred hHHHHH-HHHHHHHHhhccCchh-HHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 046417 172 EVEQLR-KLLPRLGKAVRIEGFK-AKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF 249 (595)
Q Consensus 172 ~~~~L~-~Ll~rL~klL~~~~~k-aK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a 249 (595)
..+|.+ -.+..|++.|+++... -+.+++.||-.|+...|....+|++.++|.+...+..-+-..|...+.-|+.|...
T Consensus 79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 234544 4778889999888444 34678899999998777667899999999999999754338888888888887765
Q ss_pred h
Q 046417 250 D 250 (595)
Q Consensus 250 v 250 (595)
+
T Consensus 159 v 159 (160)
T PF11865_consen 159 V 159 (160)
T ss_pred h
Confidence 4
No 118
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.30 E-value=3.3 Score=48.98 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=61.8
Q ss_pred CCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh
Q 046417 68 SSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV 147 (595)
Q Consensus 68 s~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~ 147 (595)
++++..|-.|++.|. ..---.|+| -||-.|-+...|+.+.||..++.|+..+=.-- ......+.-+++-|+.
T Consensus 119 DpN~LiRasALRvlS---sIRvp~IaP---I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd--~e~k~qL~e~I~~LLa 190 (968)
T KOG1060|consen 119 DPNQLIRASALRVLS---SIRVPMIAP---IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD--PEQKDQLEEVIKKLLA 190 (968)
T ss_pred CCcHHHHHHHHHHHH---hcchhhHHH---HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC--hhhHHHHHHHHHHHhc
Confidence 345555555555432 222222233 34445555556666666666555554443211 1111245567777888
Q ss_pred cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc
Q 046417 148 EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRI 189 (595)
Q Consensus 148 d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~ 189 (595)
|..+-|-.+|++|+..+|-+--+.+.++..+||.-|..+=+|
T Consensus 191 D~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeW 232 (968)
T KOG1060|consen 191 DRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEW 232 (968)
T ss_pred CCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhh
Confidence 999999988888888777542233345666666544433333
No 119
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.29 E-value=0.24 Score=52.48 Aligned_cols=87 Identities=21% Similarity=0.169 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhccCchh-HH-----HHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc----------CCCHHHHHH
Q 046417 175 QLRKLLPRLGKAVRIEGFK-AK-----AAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC----------CDDWATRKA 238 (595)
Q Consensus 175 ~L~~Ll~rL~klL~~~~~k-aK-----~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~----------~dDW~~Rka 238 (595)
-|+.|+|-|+..+...-.+ .+ ..++..+.|+-.---..-.||+.++||.|..++- ++.+.+|.-
T Consensus 227 GlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~ 306 (450)
T COG5095 227 GLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDV 306 (450)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 5667777777777543221 11 2222333333321122347999999999998862 234789999
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHH
Q 046417 239 AAEVLGKVAVFDKDLATEYKRSC 261 (595)
Q Consensus 239 AaEaLgsIA~avge~f~py~~~~ 261 (595)
|++.|+.+-.-.+..+...++.+
T Consensus 307 AA~ll~yV~~~F~~~YktLkPRv 329 (450)
T COG5095 307 AADLLKYVFSNFSSSYKTLKPRV 329 (450)
T ss_pred HHHHHHHHHhhhhHhhhhhchHH
Confidence 99999998877776555555553
No 120
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.27 E-value=4.5 Score=41.19 Aligned_cols=171 Identities=19% Similarity=0.134 Sum_probs=94.9
Q ss_pred hhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhh
Q 046417 27 LNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCR 106 (595)
Q Consensus 27 L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr 106 (595)
+.|-.|.......+..|-.++.+=. ...++++..|......++...+--+++++..+-..- +...|+|..++.....+
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~r~f~~L~~~L~~~~~r 86 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN-DRHFPFLQPLLLLLILR 86 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHhh
Confidence 4444444455556666666666443 457788887777655555555556677766666554 33448888777764433
Q ss_pred ----ccCCCh--hHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 046417 107 ----LRDPDS--SVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLL 180 (595)
Q Consensus 107 ----LkD~ds--~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll 180 (595)
.++.+. .+.-++..++..++....+ ....++.++...|.++.+..+|.-|.-+|+.++++.-........-|.
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~ 165 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQ 165 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 222222 2344445555555554432 111255555555525667777777777788888764333334444455
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417 181 PRLGKAVRIEGFKAKAAVLGVIGSVVR 207 (595)
Q Consensus 181 ~rL~klL~~~~~kaK~alLsAIgSlA~ 207 (595)
++| ...-++.++..+.+++.
T Consensus 166 ~~l-------~~~~rp~v~~~l~~l~~ 185 (234)
T PF12530_consen 166 KKL-------SLDYRPLVLKSLCSLFA 185 (234)
T ss_pred Hhc-------CCccchHHHHHHHHHHH
Confidence 554 22234566665666664
No 121
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.38 Score=55.99 Aligned_cols=64 Identities=25% Similarity=0.206 Sum_probs=46.5
Q ss_pred HhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417 218 DWLVPCLVEFLC-CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 218 ~~lmp~L~e~L~-~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~ 287 (595)
+..+|..++.|+ +-+--+|-.|+-+||--...-| . ..||.+||-.-.|++-.||..+.-|+.++
T Consensus 587 p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG--~----~eAi~lLepl~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 587 PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG--L----KEAINLLEPLTSDPVDFVRQGALIALAMI 651 (929)
T ss_pred hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC--c----HHHHHHHhhhhcChHHHHHHHHHHHHHHH
Confidence 456777777776 4567888888888775433222 2 35788899999999999999988776554
No 122
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.03 E-value=9.1 Score=44.91 Aligned_cols=130 Identities=16% Similarity=0.233 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh-ccHHHHHHH-hhcCChhHHHHHHHHHHHHHhcCCCchH
Q 046417 96 LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV-LSKPLIELI-LVEQDVNSQVGGAMCLAAAIDAAPNPEV 173 (595)
Q Consensus 96 LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~aL-l~d~nk~VQ~~AA~cLaaviE~a~d~~~ 173 (595)
+.+|+|.|.+.++|.+..+++.|+..++.+++.+- .+++. .+-|.+..| +...+..|+..+..||+.+++..+..
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD-~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~-- 463 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID-VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA-- 463 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH--
Confidence 56899999999999999999999999999998773 23332 344444444 24677889999999999999764321
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH--hhcccCcCcHHhHHHHHHHhccCC
Q 046417 174 EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR--VGGARSKGVLDWLVPCLVEFLCCD 231 (595)
Q Consensus 174 ~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~--a~g~~~~~yl~~lmp~L~e~L~~d 231 (595)
..++.++|-+... +...-......+.++..++- .+|. .-..+.++|.+..+...+
T Consensus 464 ~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~--ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 464 AVLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGV--EVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccce--eeehhhhhhhhhhhhhcc
Confidence 2444444443333 22332222233333322221 1221 122467788887665443
No 123
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=93.99 E-value=0.5 Score=45.50 Aligned_cols=143 Identities=13% Similarity=0.186 Sum_probs=81.3
Q ss_pred CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhh--ccCCChhHHHHHHHHHHHhhhhhc
Q 046417 53 DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCR--LRDPDSSVRSACVAATTAMSLNIT 130 (595)
Q Consensus 53 ~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr--LkD~ds~VR~Ac~~aLg~LA~~l~ 130 (595)
+.++.++..|... ..|..|++++++||.|.. +-||--+.+.--... -.+.+....+......+.-. ..
T Consensus 10 ~LL~~L~~iLk~e---~s~~iR~E~lr~lGilGA-----LDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~ 79 (160)
T PF11865_consen 10 ELLDILLNILKTE---QSQSIRREALRVLGILGA-----LDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISP--SS 79 (160)
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHhhhccc-----cCcHHHhcccccCCccccccccccchhhHHhhccCCC--ch
Confidence 3455555555542 348999999999999954 556665533211110 01112222332222111100 00
Q ss_pred CCcch--hccHHHHHHHhhcC-ChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417 131 KPSFS--VLSKPLIELILVEQ-DVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR 207 (595)
Q Consensus 131 ~~~~~--~~l~PLi~aLl~d~-nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~ 207 (595)
+.+. ..+.-|+..| .|+ -...+..+..|+-.+....+....+||++++|.++..++.-.-..+..++.-++.++.
T Consensus 80 -ee~y~~vvi~~L~~iL-~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 80 -EEYYPTVVINALMRIL-RDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred -HHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1111 2455666666 333 2334456677777777666666689999999999999986544677777766666653
No 124
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=2.3 Score=50.29 Aligned_cols=214 Identities=14% Similarity=0.096 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCC--------ChHHHH-HHHHHHHHHHHHccccc--hh-hHHHHHHHHHh
Q 046417 38 VATAELESIARTLTQDSFSSFLNCLQTTDSSS--------KSPVRK-QCVNLLTLLSRSHGDSL--SP-HLSKMISTVSC 105 (595)
Q Consensus 38 ~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~--------kp~vRK-aaI~lLG~lAEg~gd~I--~P-hLpkIL~~Ivr 105 (595)
||-.....+=..+.+-.+|+++..|....+.+ +...+| +.+.++|..|-...+.+ .. ....++|-+.
T Consensus 416 CaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpEl~- 494 (978)
T KOG1993|consen 416 CAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPELA- 494 (978)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHHhh-
Confidence 44444455555555545788888885543222 234444 55567777666554332 11 1222333332
Q ss_pred hccC-CChh-HHHHHHHHHHHhhhhhcCCcchhccHHH-HHH---HhhcC-ChhHHHHHHHHHHHHHhcC---CCchHHH
Q 046417 106 RLRD-PDSS-VRSACVAATTAMSLNITKPSFSVLSKPL-IEL---ILVEQ-DVNSQVGGAMCLAAAIDAA---PNPEVEQ 175 (595)
Q Consensus 106 rLkD-~ds~-VR~Ac~~aLg~LA~~l~~~~~~~~l~PL-i~a---Ll~d~-nk~VQ~~AA~cLaaviE~a---~d~~~~~ 175 (595)
.| ++.. +|+=.+|-+|+....=+ . .-++|+ ..+ |+.++ |..|-.+++-.|..++|.. .+.-.||
T Consensus 495 --~~~~~~RiiRRRVa~ilg~Wvsvq~--~--~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~ 568 (978)
T KOG1993|consen 495 --NDHGNSRIIRRRVAWILGQWVSVQQ--K--LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPY 568 (978)
T ss_pred --hcccchhHHHHHHHHHHhhhhheec--h--HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhh
Confidence 22 2333 46666677666665211 1 122332 222 23455 8889999999999999873 4555788
Q ss_pred HHHHHHHHHHhhcc-CchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhHH
Q 046417 176 LRKLLPRLGKAVRI-EGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC--CDDWATRKAAAEVLGKVAVFDKD 252 (595)
Q Consensus 176 L~~Ll~rL~klL~~-~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~--~dDW~~RkaAaEaLgsIA~avge 252 (595)
++.+-..+.++|+. ..+..|..++..++.++.-.+....||...++..|-..|. .++--+|-+.+-+|-.+..++|.
T Consensus 569 lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~ 648 (978)
T KOG1993|consen 569 LENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGA 648 (978)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhcc
Confidence 88887888888855 3777899999999999985544445898888888888885 34557888888889888888873
Q ss_pred ---hHHHHH
Q 046417 253 ---LATEYK 258 (595)
Q Consensus 253 ---~f~py~ 258 (595)
.+-||+
T Consensus 649 qS~~~~~fL 657 (978)
T KOG1993|consen 649 QSFEFYPFL 657 (978)
T ss_pred CCccchHHH
Confidence 444444
No 125
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.83 E-value=2.6 Score=48.07 Aligned_cols=154 Identities=12% Similarity=0.056 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHHhC--C-cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHH-Hccccc-------hhhHHHHHHHH
Q 046417 35 TLPVATAELESIARTL--T-QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSR-SHGDSL-------SPHLSKMISTV 103 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L--~-~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAE-g~gd~I-------~PhLpkIL~~I 103 (595)
+..-|++.|-.+...+ | ++.+..|+..+........+..|..|+++||.++. .|.+.- ..+++.+...+
T Consensus 372 ~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l 451 (574)
T smart00638 372 TPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELL 451 (574)
T ss_pred CHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Confidence 4444556566655554 2 33477877777655445567999999999999998 554321 22333333334
Q ss_pred HhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 046417 104 SCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRL 183 (595)
Q Consensus 104 vrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL 183 (595)
-...++.+...+..+..|||-++.... +..+.|++.+= ......++..|..||..+.+..+. .+.+.|
T Consensus 452 ~~~~~~~~~~~~~~~LkaLGN~g~~~~----i~~l~~~l~~~-~~~~~~iR~~Av~Alr~~a~~~p~-------~v~~~l 519 (574)
T smart00638 452 QQAVSKGDEEEIQLYLKALGNAGHPSS----IKVLEPYLEGA-EPLSTFIRLAAILALRNLAKRDPR-------KVQEVL 519 (574)
T ss_pred HHHHhcCCchheeeHHHhhhccCChhH----HHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHhCch-------HHHHHH
Confidence 344445677788999999998886331 12455554411 134567889999999988765544 233333
Q ss_pred HHhhcc--CchhHHHHHHH
Q 046417 184 GKAVRI--EGFKAKAAVLG 200 (595)
Q Consensus 184 ~klL~~--~~~kaK~alLs 200 (595)
+.++.+ ....+|.+++.
T Consensus 520 ~~i~~n~~e~~EvRiaA~~ 538 (574)
T smart00638 520 LPIYLNRAEPPEVRMAAVL 538 (574)
T ss_pred HHHHcCCCCChHHHHHHHH
Confidence 444433 36667765543
No 126
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.76 E-value=12 Score=40.67 Aligned_cols=208 Identities=10% Similarity=0.067 Sum_probs=131.3
Q ss_pred HHHHHHhhhhcCCCCC-hHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc
Q 046417 55 FSSFLNCLQTTDSSSK-SPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS 133 (595)
Q Consensus 55 lp~fL~~L~d~~ss~k-p~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~ 133 (595)
+..++..+....+.-+ ...=-+.+.+|-.+..-+++.+..|...=++.++..+-+....+|..|. ++|..+..+.
T Consensus 131 ~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~-~l~~~~~~~l--- 206 (372)
T PF12231_consen 131 VERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAI-SLLLEAKKCL--- 206 (372)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHHHHh---
Confidence 5556665555432122 3555677777778888888889888888888999998888888888743 4443333221
Q ss_pred chhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc-CchhHHHHHHHHHHHHHHhhccc
Q 046417 134 FSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRI-EGFKAKAAVLGVIGSVVRVGGAR 212 (595)
Q Consensus 134 ~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~-~~~kaK~alLsAIgSlA~a~g~~ 212 (595)
..++.+. -.+....+..-... .+.+.++.+|.+++.. ..+..-..+=.++-.+.......
T Consensus 207 --------------~~~~~~s----~~~~~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~ 267 (372)
T PF12231_consen 207 --------------GPNKELS----KSVLEDLQRSLENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLD 267 (372)
T ss_pred --------------ChhHHHH----HHHHHHhccccccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhh
Confidence 1122111 11122222211111 5788899999999988 44432222223332222211123
Q ss_pred CcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH--H-----hHHHHHHHHHHHHHhccCCchH-HHHHHHHHHH
Q 046417 213 SKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK--D-----LATEYKRSCLAALETRRFDKVK-IVRETMNRSL 284 (595)
Q Consensus 213 ~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg--e-----~f~py~~~~I~~Le~crfDKVK-~VRda~~~aL 284 (595)
.-.++...+.....++.+.|-.+|..|..|-..+..+.. + .+.-...+++..++.-..+|++ .||+.+...+
T Consensus 268 ~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l 347 (372)
T PF12231_consen 268 SWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSL 347 (372)
T ss_pred ccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHH
Confidence 467889999999999999999999999999999988663 1 2222335556668888888887 8888877655
Q ss_pred H
Q 046417 285 E 285 (595)
Q Consensus 285 ~ 285 (595)
-
T Consensus 348 ~ 348 (372)
T PF12231_consen 348 C 348 (372)
T ss_pred h
Confidence 3
No 127
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.74 E-value=4.4 Score=42.48 Aligned_cols=196 Identities=13% Similarity=0.128 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHccccchh--hHHHHHHHHH-hhccCCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhhcCChh
Q 046417 77 CVNLLTLLSRSHGDSLSP--HLSKMISTVS-CRLRDPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILVEQDVN 152 (595)
Q Consensus 77 aI~lLG~lAEg~gd~I~P--hLpkIL~~Iv-rrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~nk~ 152 (595)
|+.....+-+.....+.| .|..|+..++ ..++.+++.||..+..+||.++-.-. ... .++.-++..+ ...+..
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~-~~~~~~ 79 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQAL-QKDDEE 79 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHH-HhCCHH
Confidence 344445555555555655 5568887666 88999999999999999999884321 111 2555566666 555777
Q ss_pred HHHHHHHHHHHHHhcCCCchH---------HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHH
Q 046417 153 SQVGGAMCLAAAIDAAPNPEV---------EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPC 223 (595)
Q Consensus 153 VQ~~AA~cLaaviE~a~d~~~---------~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~ 223 (595)
+++.|.-|+--++-.=+.... ..-..+..-|.++|++.+..++..++..+..+.-.+.... -+.++..
T Consensus 80 v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~ 156 (298)
T PF12719_consen 80 VKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSR 156 (298)
T ss_pred HHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHH
Confidence 887777665444322111111 1234577778888888887888888888888886654432 2456666
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417 224 LVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 224 L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~ 293 (595)
|.-.|.++.-..-- .+-.+++-+|.-|.. ....--..+.++...++..|-..+..
T Consensus 157 Lll~yF~p~t~~~~-------~LrQ~L~~Ffp~y~~--------s~~~~Q~~l~~~f~~~l~~~~~~~~~ 211 (298)
T PF12719_consen 157 LLLLYFNPSTEDNQ-------RLRQCLSVFFPVYAS--------SSPENQERLAEAFLPTLRTLSNAPDE 211 (298)
T ss_pred HHHHHcCcccCCcH-------HHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHHHhCccc
Confidence 66666543211100 222223333333331 11111245667777777777766654
No 128
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.72 E-value=3.2 Score=50.36 Aligned_cols=67 Identities=13% Similarity=0.050 Sum_probs=41.2
Q ss_pred CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc-hhhHHHHHHHHHhhccCCChhHHHHHHHHHH
Q 046417 51 TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL-SPHLSKMISTVSCRLRDPDSSVRSACVAATT 123 (595)
Q Consensus 51 ~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I-~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg 123 (595)
||++||+.|+-|... -+|-.|+.+||-.-.--+=++ ...=--|.||+++.|+.+-..+|..-++--+
T Consensus 470 PPeQLPiVLQVLLSQ------vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWA 537 (1387)
T KOG1517|consen 470 PPEQLPIVLQVLLSQ------VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWA 537 (1387)
T ss_pred ChHhcchHHHHHHHH------HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHH
Confidence 688899999988753 456666666555444332111 0011146778888888887777777665433
No 129
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.69 E-value=1.1 Score=43.35 Aligned_cols=134 Identities=11% Similarity=0.138 Sum_probs=97.0
Q ss_pred hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch----hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcC
Q 046417 93 SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS----VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAA 168 (595)
Q Consensus 93 ~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~----~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a 168 (595)
...+++++.-|...|+++++.-|.+.+.-++.+.++..-+.+. ..+.-|+..|-....+.+-..|+.+|..+.+..
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 5578899999999999999999999988888888776222222 255555555633344567788899999998874
Q ss_pred C-Cc------hHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhc
Q 046417 169 P-NP------EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFL 228 (595)
Q Consensus 169 ~-d~------~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L 228 (595)
. .+ ..|.++++++-++++++. -.+...+++++..+...-...|.||...+-..+.+++
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 2 22 246788888888888865 3455678899998887766678888776666555543
No 130
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.66 E-value=1.5 Score=50.90 Aligned_cols=136 Identities=17% Similarity=0.208 Sum_probs=71.2
Q ss_pred ccCCChhHHHHHHHHHHHhhhhhcCCcchh-ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 046417 107 LRDPDSSVRSACVAATTAMSLNITKPSFSV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGK 185 (595)
Q Consensus 107 LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~k 185 (595)
|.|.=-.||.|++.+++.||..- +.+.. -|.=|++.+ +|....|-.-|..+|..+.... .+=++.++.+++
T Consensus 382 lEDEf~EVR~AAV~Sl~~La~ss--P~FA~~aldfLvDMf-NDE~~~VRL~ai~aL~~Is~~l-----~i~eeql~~il~ 453 (823)
T KOG2259|consen 382 LEDEFYEVRRAAVASLCSLATSS--PGFAVRALDFLVDMF-NDEIEVVRLKAIFALTMISVHL-----AIREEQLRQILE 453 (823)
T ss_pred chHHHHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHh-----eecHHHHHHHHH
Confidence 33333457788877777777533 22222 334444444 5555667777777777766541 223345666667
Q ss_pred hhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHH
Q 046417 186 AVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLAT 255 (595)
Q Consensus 186 lL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~ 255 (595)
.|.+.+..+|.++...++.. .+. ....+.-++..|...|.--- +.|-...-||+.|+.-.+.++.
T Consensus 454 ~L~D~s~dvRe~l~elL~~~-~~~---d~~~i~m~v~~lL~~L~kyP-qDrd~i~~cm~~iGqnH~~lv~ 518 (823)
T KOG2259|consen 454 SLEDRSVDVREALRELLKNA-RVS---DLECIDMCVAHLLKNLGKYP-QDRDEILRCMGRIGQNHRRLVL 518 (823)
T ss_pred HHHhcCHHHHHHHHHHHHhc-CCC---cHHHHHHHHHHHHHHhhhCC-CCcHHHHHHHHHHhccChhhHH
Confidence 77777777777766666532 111 12233333333433332110 1122345567777665554443
No 131
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.61 Score=53.11 Aligned_cols=122 Identities=11% Similarity=0.189 Sum_probs=87.3
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCC-ChhHHHHHHHHHHHhhhhhcCCc
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDP-DSSVRSACVAATTAMSLNITKPS 133 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~-ds~VR~Ac~~aLg~LA~~l~~~~ 133 (595)
+..+|.. ..++.+-.+|++++.+||.++= -|. ..++-++..|.++ ++.||-+.+.+||..+.--.++
T Consensus 553 v~~lLh~---avsD~nDDVrRAAViAlGfvc~--~D~------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~- 620 (926)
T COG5116 553 VSTLLHY---AVSDGNDDVRRAAVIALGFVCC--DDR------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK- 620 (926)
T ss_pred Hhhhhee---ecccCchHHHHHHHHheeeeEe--cCc------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-
Confidence 5555554 1223456899999999998763 332 3445566666665 6789999999999988754332
Q ss_pred chhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc
Q 046417 134 FSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG 191 (595)
Q Consensus 134 ~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~ 191 (595)
...-++++|+.|.+--|..+|+.|+..+.-...+.+.|-+..|..+|..++.+.+
T Consensus 621 ---~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 621 ---VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred ---HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhh
Confidence 3445667776677778889999999888777667677888888888888886554
No 132
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.38 E-value=3.8 Score=47.98 Aligned_cols=197 Identities=19% Similarity=0.165 Sum_probs=115.9
Q ss_pred HHHHHHHhCC---c--CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHH
Q 046417 42 ELESIARTLT---Q--DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRS 116 (595)
Q Consensus 42 ~LD~lA~~L~---~--~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~ 116 (595)
-|..+...|+ + +.+..++-+|.-...+.+-.||..++.+|+.+..--++---.-..+|.-.+..||.|-+|.||.
T Consensus 65 fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRi 144 (892)
T KOG2025|consen 65 FLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRI 144 (892)
T ss_pred HHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHH
Confidence 3444555554 2 2377888888777777778999999999999988333222334568888999999999999999
Q ss_pred HHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHH-------HHhcCCCchHH----HHHHHHHHHH-
Q 046417 117 ACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAA-------AIDAAPNPEVE----QLRKLLPRLG- 184 (595)
Q Consensus 117 Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaa-------viE~a~d~~~~----~L~~Ll~rL~- 184 (595)
-|+.+|.+|=..-.++ ......-+...+-.|++.-|..+|-+|+.. ++|-+.|.... ..+.++|++.
T Consensus 145 qAv~aLsrlQ~d~~de-e~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~ 223 (892)
T KOG2025|consen 145 QAVLALSRLQGDPKDE-ECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDL 223 (892)
T ss_pred HHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhh
Confidence 9999999887532222 112333344444346666677776666432 33443332210 1123444432
Q ss_pred ---------H----hhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc-CCCHHHHHHHHHHHHHH
Q 046417 185 ---------K----AVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC-CDDWATRKAAAEVLGKV 246 (595)
Q Consensus 185 ---------k----lL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~-~dDW~~RkaAaEaLgsI 246 (595)
. -|++..+-+|.|+.++|.+-= ..+.+.=++-+.+.|. +....++..|+++|-.+
T Consensus 224 r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~W-------l~~~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 224 RSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGW-------LRFSDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred hhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-------hhhccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 1 223445667777766665310 0111112333444443 34447777888888773
No 133
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=3.5 Score=44.64 Aligned_cols=183 Identities=12% Similarity=0.061 Sum_probs=111.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHccccc-hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC-Ccch---hccHHH
Q 046417 67 SSSKSPVRKQCVNLLTLLSRSHGDSL-SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK-PSFS---VLSKPL 141 (595)
Q Consensus 67 ss~kp~vRKaaI~lLG~lAEg~gd~I-~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~-~~~~---~~l~PL 141 (595)
++.+...|..++--|..++|-.-.+. .-.+. .+.-++..|+++++.||..++|++|..++.-.+ +..+ -++..|
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~g-gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLG-GLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhcc-CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 44567888888888888888664221 11122 233455599999999999999999999987643 1111 288999
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHH-HHHHHHHhhcc--CchhHHHHHHHHHHHHHHhhcccCcCcHH
Q 046417 142 IELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRK-LLPRLGKAVRI--EGFKAKAAVLGVIGSVVRVGGARSKGVLD 218 (595)
Q Consensus 142 i~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~-Ll~rL~klL~~--~~~kaK~alLsAIgSlA~a~g~~~~~yl~ 218 (595)
+..|-.+.+-.+-..|-+|+..+|-+-.+....++.- =..-|..++.+ ...+.|.-++-.|+.+.+.-.....-.-.
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999655555677888888988887744332222211 02334445555 34444444455666666532111000011
Q ss_pred hHHHHH-HHhccCCCHHHHHHHHHHHHHHHHHh
Q 046417 219 WLVPCL-VEFLCCDDWATRKAAAEVLGKVAVFD 250 (595)
Q Consensus 219 ~lmp~L-~e~L~~dDW~~RkaAaEaLgsIA~av 250 (595)
..++.. ..+....+|..+..++.++-+.....
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 222333 33345678999999998888876654
No 134
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=2.2 Score=50.61 Aligned_cols=131 Identities=19% Similarity=0.220 Sum_probs=74.0
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH-HHHHHHHhhccCCCh-hHHHHHHHHH----------
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS-KMISTVSCRLRDPDS-SVRSACVAAT---------- 122 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp-kIL~~IvrrLkD~ds-~VR~Ac~~aL---------- 122 (595)
+|.++..|... .+...--.|+++|..++|.++..+.--.. ..||+++.+|.--+= .|-+.|..||
T Consensus 213 vp~Lv~LL~~E---~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~A 289 (1051)
T KOG0168|consen 213 VPVLVALLSHE---HNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKA 289 (1051)
T ss_pred HHHHHHHHhcc---ccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHH
Confidence 45555555432 34778889999999999999854422211 234555555543321 1222222221
Q ss_pred ----HHhh---------------------hhhcC----Ccc--hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc
Q 046417 123 ----TAMS---------------------LNITK----PSF--SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP 171 (595)
Q Consensus 123 ----g~LA---------------------~~l~~----~~~--~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~ 171 (595)
|+|+ ..+|+ +.+ +.-..||+.-|+..+++.+-+.+|.||..++|+....
T Consensus 290 iL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~ 369 (1051)
T KOG0168|consen 290 ILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG 369 (1051)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC
Confidence 1111 11111 111 1234577777778889999999999999999995332
Q ss_pred h--HHHH--HHHHHHHHHhhc
Q 046417 172 E--VEQL--RKLLPRLGKAVR 188 (595)
Q Consensus 172 ~--~~~L--~~Ll~rL~klL~ 188 (595)
+ .+.| ..|+.+...||.
T Consensus 370 ~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 370 PDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred hHHHHHHhchhHHHHHHHHHh
Confidence 2 2222 246677777764
No 135
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.93 E-value=9.4 Score=43.74 Aligned_cols=188 Identities=17% Similarity=0.193 Sum_probs=102.4
Q ss_pred HHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHH
Q 046417 40 TAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACV 119 (595)
Q Consensus 40 ~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~ 119 (595)
...|-.+.+.++.+.|..+...+.... .+...|+--+-+|+.+...-. +.+|...+...+-.--. +.
T Consensus 349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~a----------v~~i~~~I~~~~~~~~e-a~ 415 (618)
T PF01347_consen 349 FSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPA----------VKFIKDLIKSKKLTDDE-AA 415 (618)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHH----------HHHHHHHHHTT-S-HHH-HH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHH----------HHHHHHHHHcCCCCHHH-HH
Confidence 667777777787777877777776532 346777777777655433221 12333333333222222 23
Q ss_pred HHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcC-CC------------c-hHHHHHHHHHH
Q 046417 120 AATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAA-PN------------P-EVEQLRKLLPR 182 (595)
Q Consensus 120 ~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a-~d------------~-~~~~L~~Ll~r 182 (595)
.++..+......+ -..++.-+++.+. ...++.+...|.+++..++-.. .. . ...|++.|...
T Consensus 416 ~~l~~l~~~~~~P-t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~ 494 (618)
T PF01347_consen 416 QLLASLPFHVRRP-TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQE 494 (618)
T ss_dssp HHHHHHHHT------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHH
T ss_pred HHHHHHHhhcCCC-CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHH
Confidence 4455555544222 1123333333331 2456678888888888877551 11 1 12355556566
Q ss_pred HHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHhH
Q 046417 183 LGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCD---DWATRKAAAEVLGKVAVFDK 251 (595)
Q Consensus 183 L~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~d---DW~~RkaAaEaLgsIA~avg 251 (595)
|..+....+...+...|-|||.+- .+..++.|..++.+. .-.+|.+|+.+|..++....
T Consensus 495 l~~~~~~~~~~~~~~~LkaLgN~g----------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 495 LKEAVSRGDEEEKIVYLKALGNLG----------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred HHHHhhccCHHHHHHHHHHhhccC----------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 556666667777788888888543 134667777777655 67889999999997765554
No 136
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.81 E-value=2 Score=50.33 Aligned_cols=207 Identities=17% Similarity=0.280 Sum_probs=128.4
Q ss_pred hHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCC--cCc---HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcccc
Q 046417 17 NDLKQRVITCLNKLADRDTLPVATAELESIARTLT--QDS---FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDS 91 (595)
Q Consensus 17 ~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~--~~~---lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~ 91 (595)
.+||..+..... +.++-|+ +.....++ .+. ++-++.|.. ..+-..+|-+.+-+..-|.++++.
T Consensus 16 ~elks~l~s~~~-----~kr~~a~---kkvIa~Mt~G~DvSslF~dvvk~~~----T~dlelKKlvyLYl~nYa~~~P~~ 83 (734)
T KOG1061|consen 16 PELKSQLNSQSK-----EKRKDAV---KKVIAYMTVGKDVSSLFPDVVKCMQ----TRDLELKKLVYLYLMNYAKGKPDL 83 (734)
T ss_pred hHHHHHhhhhhh-----hhHHHHH---HHHHhcCccCcchHhhhHHHHhhcc----cCCchHHHHHHHHHHHhhccCchH
Confidence 467766632222 3444443 33344333 333 444444443 345788999999999999999865
Q ss_pred chhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCC
Q 046417 92 LSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPN 170 (595)
Q Consensus 92 I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d 170 (595)
-.- .+.++++-..|++|.+|.-|..++|.+--. ... -++.||...+ .+.+++|+..|+.|.+++-.--++
T Consensus 84 a~~----avnt~~kD~~d~np~iR~lAlrtm~~l~v~----~i~ey~~~Pl~~~l-~d~~~yvRktaa~~vakl~~~~~~ 154 (734)
T KOG1061|consen 84 AIL----AVNTFLKDCEDPNPLIRALALRTMGCLRVD----KITEYLCDPLLKCL-KDDDPYVRKTAAVCVAKLFDIDPD 154 (734)
T ss_pred HHh----hhhhhhccCCCCCHHHHHHHhhceeeEeeh----HHHHHHHHHHHHhc-cCCChhHHHHHHHHHHHhhcCChh
Confidence 332 256889999999999999888776655421 111 2788999999 789999999999999998653222
Q ss_pred chHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcc-cCcCcHHhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Q 046417 171 PEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGA-RSKGVLDWLVPCLVEFLC-CDDWATRKAAAEVLGKVAV 248 (595)
Q Consensus 171 ~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~-~~~~yl~~lmp~L~e~L~-~dDW~~RkaAaEaLgsIA~ 248 (595)
...-..+++.|..++.+.+..+-+.++.++..|...-.. ........++..+.+.+. .++|.. +..|..++.
T Consensus 155 --~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q----i~IL~~l~~ 228 (734)
T KOG1061|consen 155 --LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ----IFILDCLAE 228 (734)
T ss_pred --hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH----HHHHHHHHh
Confidence 112234777777888777777777777777776653321 111111223333333333 367763 666666666
Q ss_pred Hh
Q 046417 249 FD 250 (595)
Q Consensus 249 av 250 (595)
.+
T Consensus 229 y~ 230 (734)
T KOG1061|consen 229 YV 230 (734)
T ss_pred cC
Confidence 55
No 137
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.70 E-value=24 Score=44.84 Aligned_cols=110 Identities=15% Similarity=0.294 Sum_probs=86.4
Q ss_pred CChhHHHHHHHHHhhhcCCCC--------------------hHHHHHHHHHHHHHhC--CcCcHHHHHHhhhhcCCCCCh
Q 046417 14 PSTNDLKQRVITCLNKLADRD--------------------TLPVATAELESIARTL--TQDSFSSFLNCLQTTDSSSKS 71 (595)
Q Consensus 14 ~~~~~lk~rvl~~L~KL~DrD--------------------T~r~A~~~LD~lA~~L--~~~~lp~fL~~L~d~~ss~kp 71 (595)
|+.--||.+.|.||+-+-.-| ...+==++||.+.+.. .++.++.+..+|.+...++.-
T Consensus 827 e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgv 906 (1692)
T KOG1020|consen 827 ENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGV 906 (1692)
T ss_pred CchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCch
Confidence 344568999999999886655 2222234456665543 267799999999999888778
Q ss_pred HHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHh
Q 046417 72 PVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAM 125 (595)
Q Consensus 72 ~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~L 125 (595)
.|||.+|+.+-.+++..+++ +-++.|..-+++|..|.+..|..-.++++-.+
T Consensus 907 sVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 907 SVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred hHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 99999999999999999986 45678999999999999999999888886554
No 138
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.65 E-value=7 Score=45.94 Aligned_cols=124 Identities=14% Similarity=0.121 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHcc--ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh---cC
Q 046417 75 KQCVNLLTLLSRSHG--DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV---EQ 149 (595)
Q Consensus 75 KaaI~lLG~lAEg~g--d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~---d~ 149 (595)
...++.++.+.+..+ +.--..+..++-+++|.+..++-.||--||--+..+......-+. .++.-|.+.|+. |.
T Consensus 60 dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd-~vfn~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDD-DVFNKLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCH-HHHHHHHHHHHHHHhcc
Confidence 356666666776665 222446778889999999999999999999999988885432121 245555566542 78
Q ss_pred ChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh-ccCchhHHHHHHHHHH
Q 046417 150 DVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAV-RIEGFKAKAAVLGVIG 203 (595)
Q Consensus 150 nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL-~~~~~kaK~alLsAIg 203 (595)
.|+|.+-|..||..+-+.-.++-.+... -+..++ ++|+-.+|.+++..|.
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~dee~~v~n----~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKDEECPVVN----LLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCCCcccHHH----HHHHHHhcCCcHHHHHHHHHhhc
Confidence 8999999999999998653333222222 223333 5678889988877663
No 139
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.44 E-value=2.8 Score=49.55 Aligned_cols=202 Identities=15% Similarity=0.148 Sum_probs=112.4
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF 134 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~ 134 (595)
+-.+..+|..-..+.+-. ...+||-+++..|+.-+++ .+.|-|.+.|+.+++.||.=|+-++.++-.... ..
T Consensus 105 llLltNslknDL~s~nq~---vVglAL~alg~i~s~Emar---dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P--~l 176 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNSSNQY---VVGLALCALGNICSPEMAR---DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP--DL 176 (866)
T ss_pred HHHHHHHHHhhccCCCee---ehHHHHHHhhccCCHHHhH---HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc--hH
Confidence 455566776656555544 4555666666667665555 777888999999999999888777777766542 22
Q ss_pred hh-ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch--------------------------------HHHHHHHHH
Q 046417 135 SV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE--------------------------------VEQLRKLLP 181 (595)
Q Consensus 135 ~~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~--------------------------------~~~L~~Ll~ 181 (595)
.. |+.+....| .+.+..|=.++..-+-.+|+..++.+ .|+|+--+-
T Consensus 177 ~e~f~~~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 177 VEHFVIAFRKLL-CEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL 255 (866)
T ss_pred HHHhhHHHHHHH-hhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH
Confidence 22 444444444 55554443332222333343322111 244444444
Q ss_pred HHHHhhccCchhHHHHHHHHHHHHHHhhcc--------------------cCcCcHHhHHHHHHHhccCCCHHHHHHHHH
Q 046417 182 RLGKAVRIEGFKAKAAVLGVIGSVVRVGGA--------------------RSKGVLDWLVPCLVEFLCCDDWATRKAAAE 241 (595)
Q Consensus 182 rL~klL~~~~~kaK~alLsAIgSlA~a~g~--------------------~~~~yl~~lmp~L~e~L~~dDW~~RkaAaE 241 (595)
||+++|..++..+...--+.++-+|.-.+. ...++..-.+..|..||.+.|-..|-.|+.
T Consensus 256 rlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn 335 (866)
T KOG1062|consen 256 RLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALN 335 (866)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence 555555444444443333444433321000 112334445777788888888888888888
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHH
Q 046417 242 VLGKVAVFDKDLATEYKRSCLAAL 265 (595)
Q Consensus 242 aLgsIA~avge~f~py~~~~I~~L 265 (595)
+|..+..........|..-++..|
T Consensus 336 ~L~r~V~~d~~avqrHr~tIleCL 359 (866)
T KOG1062|consen 336 MLLRVVQQDPTAVQRHRSTILECL 359 (866)
T ss_pred hHHhhhcCCcHHHHHHHHHHHHHh
Confidence 888876554444444444333333
No 140
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=4.6 Score=43.72 Aligned_cols=172 Identities=16% Similarity=0.211 Sum_probs=110.7
Q ss_pred HHHHhhhcC-CCChHHHHHHHHHHHHHhCCc-------CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc---cc
Q 046417 23 VITCLNKLA-DRDTLPVATAELESIARTLTQ-------DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG---DS 91 (595)
Q Consensus 23 vl~~L~KL~-DrDT~r~A~~~LD~lA~~L~~-------~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g---d~ 91 (595)
.+.+++-.+ |-+....|+..|.-++.+++. ..+.+++. +..+.++..|+.|...+|.++.--+ +.
T Consensus 86 ~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~ 161 (342)
T KOG2160|consen 86 PIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG----YLENSDAELRELAARVIGTAVQNNPKSQEQ 161 (342)
T ss_pred hhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH----HhcCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 677777664 778899999999999999862 22445554 4455678999999999999998775 33
Q ss_pred c--hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh------ccHHHHHHHhhc--CChhHHHHHHHHH
Q 046417 92 L--SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV------LSKPLIELILVE--QDVNSQVGGAMCL 161 (595)
Q Consensus 92 I--~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~------~l~PLi~aLl~d--~nk~VQ~~AA~cL 161 (595)
+ .-.|.+++..+. +|.+-.||..+.+|++.+-++-. +.+. =+.-|..+| .. .++..|..|+.=+
T Consensus 162 v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~--~g~~~fl~~~G~~~L~~vl-~~~~~~~~lkrK~~~Ll 235 (342)
T KOG2160|consen 162 VIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNNK--PGQDEFLKLNGYQVLRDVL-QSNNTSVKLKRKALFLL 235 (342)
T ss_pred HHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcCc--HHHHHHHhcCCHHHHHHHH-HcCCcchHHHHHHHHHH
Confidence 3 224555555444 55666789999999988887652 2211 133466666 44 5667788888878
Q ss_pred HHHHhcCCCc-h---HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417 162 AAAIDAAPNP-E---VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR 207 (595)
Q Consensus 162 aaviE~a~d~-~---~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~ 207 (595)
+.++++.... . ...++.++..+..-+ .+.++..++.++-++..
T Consensus 236 ~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l---~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 236 SLLLQEDKSDEDIASSLGFQRVLENLISSL---DFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHhhhhhhhHHHHhhhhHHHHHHhhcc---chhhhHHHHHHHHHHHH
Confidence 8888873211 1 112333444433333 44455566666655543
No 141
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=92.41 E-value=0.15 Score=38.52 Aligned_cols=40 Identities=30% Similarity=0.336 Sum_probs=30.6
Q ss_pred HHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHH
Q 046417 80 LLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAA 121 (595)
Q Consensus 80 lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~a 121 (595)
+|+.+++.-+..+.- +.|+..|.++|.|+.+.||+|+++.
T Consensus 2 ~l~~iv~~dp~ll~~--~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDS--SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccch--HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 455566665555422 3888999999999999999999875
No 142
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.20 E-value=4.5 Score=50.89 Aligned_cols=217 Identities=15% Similarity=0.128 Sum_probs=137.3
Q ss_pred hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCC-----CCChHHHHHHHHHHH---HHHHHccccchhhHHHHHHHHHhh
Q 046417 35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDS-----SSKSPVRKQCVNLLT---LLSRSHGDSLSPHLSKMISTVSCR 106 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~s-----s~kp~vRKaaI~lLG---~lAEg~gd~I~PhLpkIL~~Ivrr 106 (595)
..+++....-.++..|....+-+++..+.+-.. ...-.-+...+..|+ .++|.+---+.||...++--.+-.
T Consensus 1365 ~E~sV~~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a~~~~~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~ 1444 (1621)
T KOG1837|consen 1365 LERSVQNKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKAEQKCLERLISFYHFADYLQESLKSIVTPYFGYLLEPRVIL 1444 (1621)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 667777888888888876665555555544332 111233444444443 456666677788877776655544
Q ss_pred ccCCCh------------hHHHHHHHHHHHhhhhhcCC--------------cchhccHHHHHHHhh---c--CChhHHH
Q 046417 107 LRDPDS------------SVRSACVAATTAMSLNITKP--------------SFSVLSKPLIELILV---E--QDVNSQV 155 (595)
Q Consensus 107 LkD~ds------------~VR~Ac~~aLg~LA~~l~~~--------------~~~~~l~PLi~aLl~---d--~nk~VQ~ 155 (595)
|+--+. ..| -+|.+|.|+-.+... .......|++..|.+ + -...|-.
T Consensus 1445 L~k~n~s~~~~~~~~~~~~~r--~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~~ 1522 (1621)
T KOG1837|consen 1445 LKKINASKHRWFWLLPVNQSR--KPLLLGTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLLEFYASDIVSK 1522 (1621)
T ss_pred HHHhhhhhhhhhhhhcccccc--hhHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhccchhhhHHHH
Confidence 433332 234 445566666443211 111366788888754 1 1223444
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHH
Q 046417 156 GGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWAT 235 (595)
Q Consensus 156 ~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~ 235 (595)
..+.|++.+--..++. +.+|..++++...+...++|-.+|-.+--++.-.|+.....++.++|.|.|.++|++-++
T Consensus 1523 ~li~~i~~~~~a~~~d----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~V 1598 (1621)
T KOG1837|consen 1523 LLIAEIASDSVADKDD----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEV 1598 (1621)
T ss_pred HHHHHHHhhccCChhh----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHH
Confidence 4444444433223332 677777777888888889998888888877777777777888999999999999998888
Q ss_pred HHHHHHHHHHHHHHhHHhHHHH
Q 046417 236 RKAAAEVLGKVAVFDKDLATEY 257 (595)
Q Consensus 236 RkaAaEaLgsIA~avge~f~py 257 (595)
--.+.+.+..+-..+|+.|..|
T Consensus 1599 e~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1599 ECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred HHHHHHHHHHHHHHhchhhhhc
Confidence 7777777777777778876655
No 143
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.18 E-value=1.4 Score=38.91 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=60.3
Q ss_pred HHHHHHhhhcCCCC--hHHHHHHHHHHHHHhCC-cCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh
Q 046417 21 QRVITCLNKLADRD--TLPVATAELESIARTLT-QDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP 94 (595)
Q Consensus 21 ~rvl~~L~KL~DrD--T~r~A~~~LD~lA~~L~-~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P 94 (595)
...-.++..|.|.. .+.-|+..|..+.+.-. +.. ++.++..+.+...++++++=-.||..|+.+|+.+++.+.|
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~ 80 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLP 80 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHH
Confidence 34556778888877 56669999999888765 333 8888888888888899999999999999999999986555
No 144
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.14 E-value=2.7 Score=48.25 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=63.4
Q ss_pred CCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCC
Q 046417 31 ADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDP 110 (595)
Q Consensus 31 ~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ 110 (595)
++.-+-+.|++-+-.+...+| +.-...+.++.|-..+++..+|+.||+.|..+|..-++ |+++|.-.+++.|+-.
T Consensus 34 g~~k~K~Laaq~I~kffk~FP-~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~QlL~td 108 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFP-DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQLLQTD 108 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-G-GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHHHHhcc
Confidence 455688899999999999996 33333444444444456789999999998888887666 7889999999999999
Q ss_pred ChhHHHHHHHHHHHhhh
Q 046417 111 DSSVRSACVAATTAMSL 127 (595)
Q Consensus 111 ds~VR~Ac~~aLg~LA~ 127 (595)
|+..+.++-++|-.|-.
T Consensus 109 d~~E~~~v~~sL~~ll~ 125 (556)
T PF05918_consen 109 DPVELDAVKNSLMSLLK 125 (556)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 99888888888766554
No 145
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.12 E-value=4 Score=50.07 Aligned_cols=170 Identities=11% Similarity=0.100 Sum_probs=101.7
Q ss_pred HHHHHHhhhhcC----CCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc
Q 046417 55 FSSFLNCLQTTD----SSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT 130 (595)
Q Consensus 55 lp~fL~~L~d~~----ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~ 130 (595)
+..|.+.+.+-- ...+|..+.+|..+||-+.=.-.++-..|||-++..+- +.|.|.||.-|+-++|-|+-...
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftime---ksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIME---KSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh---cCCCceeeecchheccchhhhcc
Confidence 555555554432 34568899999999987755554444445554444332 47999999999999888885441
Q ss_pred CCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc--------------hHHHHHHHHHHHHHhhccCchhHHH
Q 046417 131 KPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP--------------EVEQLRKLLPRLGKAVRIEGFKAKA 196 (595)
Q Consensus 131 ~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~--------------~~~~L~~Ll~rL~klL~~~~~kaK~ 196 (595)
.++.-+.+.+-+.++|.++.|+..|.+-|..+|=+---. +.+-+..|+..|++-|.+..--.-+
T Consensus 994 --nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n~iyn 1071 (1251)
T KOG0414|consen 994 --NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKGNTIYN 1071 (1251)
T ss_pred --cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccchhh
Confidence 111122233333347889999999999988887542111 1134445666666666555421222
Q ss_pred HHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCC
Q 046417 197 AVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCD 231 (595)
Q Consensus 197 alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~d 231 (595)
.+=+.|+-+..- +..+.+ +..+|..|+.++..+
T Consensus 1072 lLPdil~~Ls~~-~l~~~~-~~~vm~~li~~ikkd 1104 (1251)
T KOG0414|consen 1072 LLPDILSRLSNG-NLEEES-YKTVMEFLIGLIKKD 1104 (1251)
T ss_pred hchHHHHhhccC-cccchh-hHHHHHHHHHHhccc
Confidence 222444433322 334445 478899999888765
No 146
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=91.77 E-value=3 Score=49.42 Aligned_cols=138 Identities=15% Similarity=0.113 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhH
Q 046417 35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSV 114 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~V 114 (595)
-.|.---.|..+|+.-| +..-..++.+...+.++++..|=.||+.++.+=. ...++.+++.|.+.+.|+++.|
T Consensus 71 lKrL~ylYl~~yak~~P-~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~------~el~~~~~~~ik~~l~d~~ayV 143 (757)
T COG5096 71 LKRLLYLYLERYAKLKP-ELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV------KELLGNIIDPIKKLLTDPHAYV 143 (757)
T ss_pred HHHHHHHHHHHHhccCH-HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHccCCcHHH
Confidence 34455555666666554 3333445666666788999999999999888754 2356688899999999999999
Q ss_pred HHHHHHHHHHhhhh---hcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 046417 115 RSACVAATTAMSLN---ITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGK 185 (595)
Q Consensus 115 R~Ac~~aLg~LA~~---l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~k 185 (595)
|..++.+++.+=+. +..+. . +.-+...|+.|.++.|-..|..+|..+.+. ...+|...++.++-.
T Consensus 144 Rk~Aalav~kly~ld~~l~~~~--g-~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e---~a~~~~~~~~~~i~~ 211 (757)
T COG5096 144 RKTAALAVAKLYRLDKDLYHEL--G-LIDILKELVADSDPIVIANALASLAEIDPE---LAHGYSLEVILRIPQ 211 (757)
T ss_pred HHHHHHHHHHHHhcCHhhhhcc--c-HHHHHHHHhhCCCchHHHHHHHHHHHhchh---hhhhHHHHHHHHhhh
Confidence 99999998887632 22111 0 222344455789999888877777776655 234566655554444
No 147
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.70 E-value=0.25 Score=36.31 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=26.8
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHhhh
Q 046417 98 KMISTVSCRLRDPDSSVRSACVAATTAMSL 127 (595)
Q Consensus 98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~ 127 (595)
..||.+++.|+++++.|+..|+|+|+-|+.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 467889999999999999999999998874
No 148
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=91.55 E-value=1.7 Score=39.16 Aligned_cols=90 Identities=16% Similarity=0.184 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhhcc----CchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 046417 174 EQLRKLLPRLGKAVRI----EGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF 249 (595)
Q Consensus 174 ~~L~~Ll~rL~klL~~----~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a 249 (595)
+++--|+.+|-..+.+ ....-|..++.+|+.++..++..-..+.+++|-+|+..+..+ .+|..|++|...+...
T Consensus 7 ~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 7 PHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHH
Confidence 3444566666666655 566778888999999998776665677788888888888777 7899999999999998
Q ss_pred hH-HhHHHHHHHHHHHH
Q 046417 250 DK-DLATEYKRSCLAAL 265 (595)
Q Consensus 250 vg-e~f~py~~~~I~~L 265 (595)
+. +.+.|+.+.++..+
T Consensus 85 L~~~~l~~ll~~~~~~l 101 (107)
T PF08064_consen 85 LDEEDLGPLLDQIFAIL 101 (107)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 86 57777777766554
No 149
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.52 E-value=3.9 Score=46.58 Aligned_cols=149 Identities=11% Similarity=0.083 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChh
Q 046417 35 TLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSS 113 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~ 113 (595)
.+.-..+.|.-++--++.+. +..+..-+.+ ..+.|..-++++-.|..++......=.+-||+||..|++.= ....
T Consensus 368 fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp--~Q~~ 443 (559)
T KOG2081|consen 368 FRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLP--EQAP 443 (559)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCc--cchh
Confidence 44455666677777777655 7766666665 34569999999999998887766444555666666665542 2233
Q ss_pred HHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh-cCChhHHHHHHHHHHHHHhcCCCch---HHHHHHHHHHHHHhhcc
Q 046417 114 VRSACVAATTAMSLNITKPSFSVLSKPLIELILV-EQDVNSQVGGAMCLAAAIDAAPNPE---VEQLRKLLPRLGKAVRI 189 (595)
Q Consensus 114 VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~-d~nk~VQ~~AA~cLaaviE~a~d~~---~~~L~~Ll~rL~klL~~ 189 (595)
||..++--+|.|++|+...| .++.|+...++. -+.+..+.+||.|+..++....+.. .+++..+.--+...+-+
T Consensus 444 ~~~ts~ll~g~~~ew~~~~p--~~le~v~~~~~~~~~~~~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~ 521 (559)
T KOG2081|consen 444 LRYTSILLLGEYSEWVEQHP--ELLEPVLRYIRQGLQLKRLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQIN 521 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc
Confidence 99999999999999996544 356666666543 2344588899999999888753322 35555555544444433
No 150
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=91.27 E-value=17 Score=38.64 Aligned_cols=190 Identities=16% Similarity=0.134 Sum_probs=97.7
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC---
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK--- 131 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~--- 131 (595)
+..|++++..- .+-....+.+.+|+.-....+..+. ++++.++.+.++|..+.||.+-...+|.+......
T Consensus 24 ~~~l~~~~~KE---~nE~aL~~~l~al~~~~~~~~~~~~---~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 24 VQGLSPLLSKE---SNEAALSALLSALFKHLFFLSSELP---KKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred HHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHhCcCCC---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 44555555442 3455666666666665555533333 48889999999999999999999888887651000
Q ss_pred Ccch-hccHHHHHHHh---hcCChhHH---HHHHHHHHHHHhcCCCchH--HHHH-----------HHHHHHHHh-hccC
Q 046417 132 PSFS-VLSKPLIELIL---VEQDVNSQ---VGGAMCLAAAIDAAPNPEV--EQLR-----------KLLPRLGKA-VRIE 190 (595)
Q Consensus 132 ~~~~-~~l~PLi~aLl---~d~nk~VQ---~~AA~cLaaviE~a~d~~~--~~L~-----------~Ll~rL~kl-L~~~ 190 (595)
..+. .++++|++.+- ...-+..| ..+|+|+........+... .... -+-+|++.- ...+
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~ 177 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEE 177 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHh
Confidence 0122 25555555552 23334444 3445544441111000000 0000 111444444 2222
Q ss_pred chhHHHHHHHHHHHHHHhhcc-cCcCcHHhHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhHHh
Q 046417 191 GFKAKAAVLGVIGSVVRVGGA-RSKGVLDWLVPCLVEFLCCD--DWATRKAAAEVLGKVAVFDKDL 253 (595)
Q Consensus 191 ~~kaK~alLsAIgSlA~a~g~-~~~~yl~~lmp~L~e~L~~d--DW~~RkaAaEaLgsIA~avge~ 253 (595)
... -++.++.+++.--.. .........-..++-++.+. .|.+|+.|+++|..+....+..
T Consensus 178 d~~---w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 178 DLC---WLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred HHH---HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 222 233344433321110 00010233445556666666 8999999999999886655443
No 151
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=91.09 E-value=2.8 Score=43.88 Aligned_cols=144 Identities=13% Similarity=0.140 Sum_probs=96.0
Q ss_pred cccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc---ch------hccHHHHHHHh-------hcCChh
Q 046417 89 GDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS---FS------VLSKPLIELIL-------VEQDVN 152 (595)
Q Consensus 89 gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~---~~------~~l~PLi~aLl-------~d~nk~ 152 (595)
...+..|++-++|.++..+-|.++.++.-.|..|..|...+.... +. .|..-|...|. .+....
T Consensus 110 ~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~ 189 (282)
T PF10521_consen 110 RPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLE 189 (282)
T ss_pred cchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHH
Confidence 377788999999999999999999999999999999998764322 11 12222333332 033344
Q ss_pred HHHHHHHHHHHHHhcC---CCch-HHHHHHHH-HHHHHhhcc----CchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHH
Q 046417 153 SQVGGAMCLAAAIDAA---PNPE-VEQLRKLL-PRLGKAVRI----EGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPC 223 (595)
Q Consensus 153 VQ~~AA~cLaaviE~a---~d~~-~~~L~~Ll-~rL~klL~~----~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~ 223 (595)
+-..|--||-.++... +... ...+.+++ ..++.-+.+ +...+...+++.+..++..-|.....|+..++|.
T Consensus 190 Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~ 269 (282)
T PF10521_consen 190 LLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPV 269 (282)
T ss_pred HHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5556666666664431 1111 22333333 324444433 2466778888999998888887778999999999
Q ss_pred HHHhccCCC
Q 046417 224 LVEFLCCDD 232 (595)
Q Consensus 224 L~e~L~~dD 232 (595)
|.+++.+.+
T Consensus 270 l~~~l~npf 278 (282)
T PF10521_consen 270 LSQILENPF 278 (282)
T ss_pred HHHHhcCCC
Confidence 999988764
No 152
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.08 E-value=24 Score=42.25 Aligned_cols=171 Identities=18% Similarity=0.241 Sum_probs=113.0
Q ss_pred hHHHHHHHHHhhhc-CCC-C--hHHHHHHHHHHHHHhCC--cCcHHHHHHhhhhcC-----CCCChHHHHHHHHHHHHHH
Q 046417 17 NDLKQRVITCLNKL-ADR-D--TLPVATAELESIARTLT--QDSFSSFLNCLQTTD-----SSSKSPVRKQCVNLLTLLS 85 (595)
Q Consensus 17 ~~lk~rvl~~L~KL-~Dr-D--T~r~A~~~LD~lA~~L~--~~~lp~fL~~L~d~~-----ss~kp~vRKaaI~lLG~lA 85 (595)
.|+|..+.-++.+| .|. | +.=.++++|..++.... ++.+.++++.+.... .-..-..|-..+.+|+.+.
T Consensus 521 ~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI 600 (978)
T KOG1993|consen 521 LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLI 600 (978)
T ss_pred HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 57788887777776 455 3 66668889999988754 666555555443321 0112356778999999999
Q ss_pred HHccccchhhHHHHHHHHHhhccC--CChhHHHHHHHHHHHhhhhhcCCcch--hccHHHHHHHhhcCC-h-hH--HHHH
Q 046417 86 RSHGDSLSPHLSKMISTVSCRLRD--PDSSVRSACVAATTAMSLNITKPSFS--VLSKPLIELILVEQD-V-NS--QVGG 157 (595)
Q Consensus 86 Eg~gd~I~PhLpkIL~~IvrrLkD--~ds~VR~Ac~~aLg~LA~~l~~~~~~--~~l~PLi~aLl~d~n-k-~V--Q~~A 157 (595)
+-.++.|.||..+|++++-..=+. .++.+|-|-..+|-.|..-+..+++. .|+-|+++.= .|.+ + +| -+.+
T Consensus 601 ~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~-~D~~sP~hv~L~EDg 679 (978)
T KOG1993|consen 601 ERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELS-TDPSSPEHVYLLEDG 679 (978)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHh-cCCCCCceeehhhhH
Confidence 999999999999999988777554 46778999999999999888765433 5888888775 3322 2 21 1222
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc
Q 046417 158 AMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRI 189 (595)
Q Consensus 158 A~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~ 189 (595)
-.-=..++++.+. ..|-+-.|+|.+.-.+..
T Consensus 680 meLW~~~L~n~~~-l~p~ll~L~p~l~~~iE~ 710 (978)
T KOG1993|consen 680 MELWLTTLMNSQK-LTPELLLLFPHLLYIIEQ 710 (978)
T ss_pred HHHHHHHHhcccc-cCHHHHHHHHHHHHHHHh
Confidence 2223345555533 224555566666666643
No 153
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.06 E-value=2.5 Score=48.08 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=78.2
Q ss_pred hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccC--------chhHHHHHHHHHHHHHH
Q 046417 136 VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIE--------GFKAKAAVLGVIGSVVR 207 (595)
Q Consensus 136 ~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~--------~~kaK~alLsAIgSlA~ 207 (595)
.|++-+++++++ .+...-..|-.+|+ .| +-|+.|+|+|...+... ++..=..++..+.|+..
T Consensus 207 lYy~~It~a~~g-~~~~~r~eAL~sL~------TD---sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 207 LYYKEITEACTG-SDEPLRQEALQSLE------TD---SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHHhc-CCHHHHHHHHHhhc------cC---ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 377778888865 33222222222222 22 35677777777776322 22222233345555554
Q ss_pred hhcccCcCcHHhHHHHHHHhcc----------CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCc
Q 046417 208 VGGARSKGVLDWLVPCLVEFLC----------CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDK 272 (595)
Q Consensus 208 a~g~~~~~yl~~lmp~L~e~L~----------~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDK 272 (595)
--.....+|+-.+||.+..|+- |+.|.+|--|++.|..|....++........+++.|..--.|-
T Consensus 277 Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 277 NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDN 351 (576)
T ss_pred CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 3333457999999999999862 5789999999999999988877655555566666655444454
No 154
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=90.73 E-value=14 Score=38.49 Aligned_cols=174 Identities=14% Similarity=0.135 Sum_probs=102.4
Q ss_pred hhhcCCCChHHHHHHHHHHHHH--hCCcCcHHHHHHhhhhcC--CCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHH
Q 046417 27 LNKLADRDTLPVATAELESIAR--TLTQDSFSSFLNCLQTTD--SSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMIST 102 (595)
Q Consensus 27 L~KL~DrDT~r~A~~~LD~lA~--~L~~~~lp~fL~~L~d~~--ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~ 102 (595)
++||.|..+...|+..|..|++ .++.+....++..|.+.. ++.--..|..+..+|..+.+-|.+.+...-...+..
T Consensus 48 ~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~ 127 (262)
T PF14500_consen 48 CSRLDDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYG 127 (262)
T ss_pred HHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHH
Confidence 4688888888889999999984 345666777777776543 233358999999999999999988775555556666
Q ss_pred HHhhccC-CChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh---------cCChh--HHHHHHHHHHHHHhcCCC
Q 046417 103 VSCRLRD-PDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV---------EQDVN--SQVGGAMCLAAAIDAAPN 170 (595)
Q Consensus 103 IvrrLkD-~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~---------d~nk~--VQ~~AA~cLaaviE~a~d 170 (595)
++..+.. -||.---.+..-+..+..... ...+..-+++.+.- .++++ -...=..+|...+-+.+
T Consensus 128 ~i~~~~gEkDPRnLl~~F~l~~~i~~~~~---~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~- 203 (262)
T PF14500_consen 128 FIQLIDGEKDPRNLLLSFKLLKVILQEFD---ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP- 203 (262)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHhcc---cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-
Confidence 5554432 244432233333333333331 11244555555531 22332 11122222222222111
Q ss_pred chHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417 171 PEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR 207 (595)
Q Consensus 171 ~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~ 207 (595)
.+-+..+|-|+.-|.+....+|.-++.++..-+.
T Consensus 204 ---~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 204 ---LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIE 237 (262)
T ss_pred ---hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 2445677888888888887788777666665554
No 155
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.61 E-value=19 Score=46.55 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=94.7
Q ss_pred CcCcH-HHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhH-HHHHHHHHHHhhhh
Q 046417 51 TQDSF-SSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSV-RSACVAATTAMSLN 128 (595)
Q Consensus 51 ~~~~l-p~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~V-R~Ac~~aLg~LA~~ 128 (595)
.|+.+ ..-+.++.......+|..|=++..++|-++-..++. |++..+..+++.+|++.+..| |.--.-++|.+=++
T Consensus 869 g~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhky 946 (2067)
T KOG1822|consen 869 GPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKY 946 (2067)
T ss_pred CHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 34443 344555555567788999999999999999988874 678889999999999986665 66667778888777
Q ss_pred hcCCcchhccHH---HHHHHhhcCC-hhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Q 046417 129 ITKPSFSVLSKP---LIELILVEQD-VNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAV 187 (595)
Q Consensus 129 l~~~~~~~~l~P---Li~aLl~d~n-k~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL 187 (595)
.........+.. ++-+|..|.+ +.||.-+-.||+-++|........|+...+--..++|
T Consensus 947 vgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lL 1009 (2067)
T KOG1822|consen 947 VGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLL 1009 (2067)
T ss_pred ccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHc
Confidence 643111112223 5556655654 5999999999999999865544556666555555555
No 156
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=90.56 E-value=0.6 Score=54.12 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=117.1
Q ss_pred HHHHHHHHHhhhc---CCCChHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcccc-c
Q 046417 18 DLKQRVITCLNKL---ADRDTLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDS-L 92 (595)
Q Consensus 18 ~lk~rvl~~L~KL---~DrDT~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~-I 92 (595)
+.-++++-+|.|| -||-++-.=++-++.++..|+++. -..+++++..-+.+.++..|+..++.+..+|.-.+.. +
T Consensus 326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 3667788888887 377788888899999999998554 3355555554444557899999999999999888755 3
Q ss_pred hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc-chhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc
Q 046417 93 SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS-FSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP 171 (595)
Q Consensus 93 ~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~-~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~ 171 (595)
.- +++.++-+.--|.+..+|.-+-..+|.++.++.-.. ...+..+..-+| .|.-...-.++.++|.+..+.-+
T Consensus 406 n~---Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftral-kdpf~paR~a~v~~l~at~~~~~-- 479 (690)
T KOG1243|consen 406 NG---ELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRAL-KDPFVPARKAGVLALAATQEYFD-- 479 (690)
T ss_pred cH---HHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhh-cCCCCCchhhhhHHHhhcccccc--
Confidence 33 666666666668888899888888898888863100 001333333355 34444556677777777666422
Q ss_pred hHHHHHHHHHHHHHhhccCchhHHHHHH
Q 046417 172 EVEQLRKLLPRLGKAVRIEGFKAKAAVL 199 (595)
Q Consensus 172 ~~~~L~~Ll~rL~klL~~~~~kaK~alL 199 (595)
....-.+|+|++.-+.-++...++..+.
T Consensus 480 ~~~va~kIlp~l~pl~vd~e~~vr~~a~ 507 (690)
T KOG1243|consen 480 QSEVANKILPSLVPLTVDPEKTVRDTAE 507 (690)
T ss_pred hhhhhhhccccccccccCcccchhhHHH
Confidence 2234567888888777666555554433
No 157
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.36 E-value=27 Score=42.18 Aligned_cols=241 Identities=10% Similarity=0.086 Sum_probs=139.3
Q ss_pred HHHHhhhcCCCChHHHHHHH-HHHHHHhCCcCcHHHHHHh----hhhcC----CCCChHHHHHHHHHHHHHHHHccccch
Q 046417 23 VITCLNKLADRDTLPVATAE-LESIARTLTQDSFSSFLNC----LQTTD----SSSKSPVRKQCVNLLTLLSRSHGDSLS 93 (595)
Q Consensus 23 vl~~L~KL~DrDT~r~A~~~-LD~lA~~L~~~~lp~fL~~----L~d~~----ss~kp~vRKaaI~lLG~lAEg~gd~I~ 93 (595)
+-+-..+-.|.++.+..... +..++..++.+.+.++... +.++. .....-++-.+..+.+..+.+-++..-
T Consensus 365 ~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~d 444 (1005)
T KOG2274|consen 365 VNQFVADEDDGYTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDAND 444 (1005)
T ss_pred HHHhhccCCCCchhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchH
Confidence 33344444455577775554 5678889988887777776 33321 111123444455555555555555566
Q ss_pred hhHHHHHHHHHhhccCCCh-hHHHHHHHHHHHhhhhhcC--CcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCC
Q 046417 94 PHLSKMISTVSCRLRDPDS-SVRSACVAATTAMSLNITK--PSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPN 170 (595)
Q Consensus 94 PhLpkIL~~IvrrLkD~ds-~VR~Ac~~aLg~LA~~l~~--~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d 170 (595)
.++..++-++..+|--.+. ..-.-+.|+++.++.-... +.+..|+.-.+.++.-+.-+.+.++|+.++..++ -..
T Consensus 445 d~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~ 522 (1005)
T KOG2274|consen 445 DKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVK 522 (1005)
T ss_pred HHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--Cce
Confidence 6677777677777666553 2333677888888876422 2222466667777755666778888888888877 344
Q ss_pred chHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhcc--CCCHHHHHHHHHHHHHHH
Q 046417 171 PEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLC--CDDWATRKAAAEVLGKVA 247 (595)
Q Consensus 171 ~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~--~dDW~~RkaAaEaLgsIA 247 (595)
.+.+.++.++.-|..+.-...-.+=.++..++..+...-.+ |..-. ..+.|.+..... ++|=++-.-+-|++-.+.
T Consensus 523 vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpe-f~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~ 601 (1005)
T KOG2274|consen 523 VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPE-FAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELL 601 (1005)
T ss_pred eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChh-hhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 45678888888888888665666667777888877754322 11111 223444443321 233355555555554443
Q ss_pred ---HHhHHhHHHHHHHHHHHHH
Q 046417 248 ---VFDKDLATEYKRSCLAALE 266 (595)
Q Consensus 248 ---~avge~f~py~~~~I~~Le 266 (595)
...|....-..+.++.+|.
T Consensus 602 q~~~~~g~m~e~~iPslisil~ 623 (1005)
T KOG2274|consen 602 QIAANYGPMQERLIPSLISVLQ 623 (1005)
T ss_pred HHHHhhcchHHHHHHHHHHHHc
Confidence 3334433334455555554
No 158
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.08 E-value=0.67 Score=48.88 Aligned_cols=187 Identities=17% Similarity=0.207 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHhhhc-CCCChHHHHHHHHHHHHHhCCcCcHH------------HHHHhhhhcCCCCChHHHHHHHHHHH
Q 046417 16 TNDLKQRVITCLNKL-ADRDTLPVATAELESIARTLTQDSFS------------SFLNCLQTTDSSSKSPVRKQCVNLLT 82 (595)
Q Consensus 16 ~~~lk~rvl~~L~KL-~DrDT~r~A~~~LD~lA~~L~~~~lp------------~fL~~L~d~~ss~kp~vRKaaI~lLG 82 (595)
+.....-++..|.++ ++.||.+..+..++-|...-+ .... ++-+.+. ...++++.....++..|+
T Consensus 53 ~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~-~~~~~~~~~~~~~~~~~~~~fl~-ll~~~D~~i~~~a~~iLt 130 (312)
T PF03224_consen 53 GDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP-SRVELFLELAKQDDSDPYSPFLK-LLDRNDSFIQLKAAFILT 130 (312)
T ss_dssp ---------HHHHHH---HHHHHHHHHHHHHHHH-SS-SSHHHHHHHHH-TTH--HHHHHH-H-S-SSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHhcccccchhHHHHHH-HhcCCCHHHHHHHHHHHH
Confidence 445666777888888 888999999999988877654 1111 2222232 344568999999999999
Q ss_pred HHHHHccccchh----hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh-cCCcch--hccHHHHHHH------hhcC
Q 046417 83 LLSRSHGDSLSP----HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI-TKPSFS--VLSKPLIELI------LVEQ 149 (595)
Q Consensus 83 ~lAEg~gd~I~P----hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l-~~~~~~--~~l~PLi~aL------l~d~ 149 (595)
.++...+..... .|+.++.++...++.++..++..|+.+|+.|...= .+..+. ..+.+|+..| -+..
T Consensus 131 ~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~ 210 (312)
T PF03224_consen 131 SLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSS 210 (312)
T ss_dssp HHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------
T ss_pred HHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCC
Confidence 999988765544 66777777777666677788899999988887321 001111 2667777766 1122
Q ss_pred ChhHHHHHHHHHHHHHhcCCCchHHHH--HHHHHHHHHhhccC-chhHHHHHHHHHHHHH
Q 046417 150 DVNSQVGGAMCLAAAIDAAPNPEVEQL--RKLLPRLGKAVRIE-GFKAKAAVLGVIGSVV 206 (595)
Q Consensus 150 nk~VQ~~AA~cLaaviE~a~d~~~~~L--~~Ll~rL~klL~~~-~~kaK~alLsAIgSlA 206 (595)
+...|=.+++|+=-+-=+ +...+.+ ..+++.|+.+++.. .=|+--.++.++..++
T Consensus 211 ~~Ql~Y~~ll~lWlLSF~--~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~ 268 (312)
T PF03224_consen 211 GIQLQYQALLCLWLLSFE--PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLL 268 (312)
T ss_dssp HHHHHHHHHHHHHHHTTS--HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHhcC--HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 334455677764332111 0011111 11666666666543 2233334444444444
No 159
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=89.88 E-value=2.9 Score=47.08 Aligned_cols=194 Identities=11% Similarity=0.095 Sum_probs=126.5
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccc-cchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC-
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGD-SLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP- 132 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd-~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~- 132 (595)
.+.|+..--| +.+..+|-++++++++.+=.++- -..-+...-...|++.|-|..-.+|.-+.|++|.+...+.+.
T Consensus 392 ~~~Fl~GC~d---~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~ 468 (728)
T KOG4535|consen 392 CITFLLGCND---SKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNM 468 (728)
T ss_pred hHHHHhcccc---hHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCC
Confidence 6666665543 45678999999999998877763 335556666677888888888889999999999999888653
Q ss_pred cc----h-hccHHHHHHHhh-----c-CChhHHHHHHHHHHHHHhcCCCchHHHHHHHH-HHHHHhhc----cCchhHHH
Q 046417 133 SF----S-VLSKPLIELILV-----E-QDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLL-PRLGKAVR----IEGFKAKA 196 (595)
Q Consensus 133 ~~----~-~~l~PLi~aLl~-----d-~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll-~rL~klL~----~~~~kaK~ 196 (595)
|. . .+.--++..++. + .+-.|...|.-+|....+-........+..++ .-+.+++. .-.+++|-
T Consensus 469 Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~W 548 (728)
T KOG4535|consen 469 PTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRW 548 (728)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccch
Confidence 21 1 133333333321 2 12347777777777766653222222233322 22233332 23778898
Q ss_pred HHHHHHHHHHHhh--cccCcCcHHhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhH
Q 046417 197 AVLGVIGSVVRVG--GARSKGVLDWLVPCLVEFLC-CDDWATRKAAAEVLGKVAVFDK 251 (595)
Q Consensus 197 alLsAIgSlA~a~--g~~~~~yl~~lmp~L~e~L~-~dDW~~RkaAaEaLgsIA~avg 251 (595)
.+--++|.++.-. .....++...+.+.|...+. ..++.+|..|+-+|...+.-.+
T Consensus 549 NaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 549 NACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred HHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence 8888999988532 22235666778888888876 4789999999998887776553
No 160
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=89.63 E-value=11 Score=43.15 Aligned_cols=20 Identities=10% Similarity=0.127 Sum_probs=13.2
Q ss_pred ChhHHHHHHHHHHHhhhhhc
Q 046417 111 DSSVRSACVAATTAMSLNIT 130 (595)
Q Consensus 111 ds~VR~Ac~~aLg~LA~~l~ 130 (595)
.+.+|..|.-++|.+....|
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c 429 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYC 429 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHh
Confidence 34567777777777776554
No 161
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=89.24 E-value=22 Score=43.43 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=48.9
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhh
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSL 127 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~ 127 (595)
+|.|...|.- ++.-..|...|.++|.+|-.+--.+- +-+|.|..+|+||++.||..+..-|++|-+
T Consensus 970 ~P~lvkeLe~---~~~~aiRnNiV~am~D~C~~YTam~d----~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq 1035 (1529)
T KOG0413|consen 970 MPMLVKELEY---NTAHAIRNNIVLAMGDICSSYTAMTD----RYIPMIAASLCDPSVIVRRQTIILLARLLQ 1035 (1529)
T ss_pred HHHHHHHHHh---hhHHHHhcceeeeehhhHHHHHHHHH----HhhHHHHHHhcCchHHHHHHHHHHHHHHHh
Confidence 6777766654 23468899999999888877744333 445577889999999999988877776653
No 162
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=89.16 E-value=7 Score=41.78 Aligned_cols=193 Identities=17% Similarity=0.151 Sum_probs=131.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCc----HHHHHHhhhhcCCCCChHHHHHHHHHH
Q 046417 6 RSSSASPPPSTNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDS----FSSFLNCLQTTDSSSKSPVRKQCVNLL 81 (595)
Q Consensus 6 ~~~~~~~~~~~~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~----lp~fL~~L~d~~ss~kp~vRKaaI~lL 81 (595)
..+.++..|....+=+|+-|||+---=.--++-|++.-+.|=+.++++. ++.+++.|....+.....+|-..+.++
T Consensus 42 ~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~ 121 (307)
T PF04118_consen 42 SNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIY 121 (307)
T ss_pred cCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3445566677789999999999874444467778888888888887554 778888888877666678898888888
Q ss_pred HHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHH
Q 046417 82 TLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCL 161 (595)
Q Consensus 82 G~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cL 161 (595)
..-----+..+.|.++-++..++..|.|..+.+-+-+..-+-.+...+.+. .|..-+..+++. ++.+-.+|-.-|
T Consensus 122 e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~---~F~~~lwl~ii~--sp~~Rl~al~~l 196 (307)
T PF04118_consen 122 EKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK---YFWQCLWLCIIT--SPSRRLGALNYL 196 (307)
T ss_pred HHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh---HHHHHHHHHHhc--CcchhHHHHHHH
Confidence 776666678889999999999999999999999888888888888776432 477777888864 333444443333
Q ss_pred HHHHhcCC-------CchHH-HH----HHHHHHHHHhhccCchhHHHHHHHHHH
Q 046417 162 AAAIDAAP-------NPEVE-QL----RKLLPRLGKAVRIEGFKAKAAVLGVIG 203 (595)
Q Consensus 162 aaviE~a~-------d~~~~-~L----~~Ll~rL~klL~~~~~kaK~alLsAIg 203 (595)
.+-..... ..... .+ .-++..|+..|++++.-++-..+|.+-
T Consensus 197 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl 250 (307)
T PF04118_consen 197 LRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLL 250 (307)
T ss_pred HHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 33222111 00001 11 135566666666666666655555554
No 163
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=89.02 E-value=4.8 Score=36.08 Aligned_cols=75 Identities=16% Similarity=0.020 Sum_probs=56.8
Q ss_pred CcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccC--------CchHHHHHHHHHHHHH
Q 046417 215 GVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRF--------DKVKIVRETMNRSLEM 286 (595)
Q Consensus 215 ~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crf--------DKVK~VRda~~~aL~~ 286 (595)
.....+|..|...|.+.+|..-.-|+..|=++...+|+.|..+...-.-..+-++| |.=..||+-+.+.+++
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 44567888899999999999999999999999999998776665332222232332 2236899999999999
Q ss_pred hHh
Q 046417 287 WKE 289 (595)
Q Consensus 287 ~K~ 289 (595)
|.+
T Consensus 113 w~~ 115 (115)
T cd00197 113 WAS 115 (115)
T ss_pred HhC
Confidence 974
No 164
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.89 E-value=52 Score=40.17 Aligned_cols=274 Identities=15% Similarity=0.116 Sum_probs=145.0
Q ss_pred HHHHHHHHHhhhcCCCCh--HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCC-----CC-hHHHHHHHHHHHHHHHHcc
Q 046417 18 DLKQRVITCLNKLADRDT--LPVATAELESIARTLTQDSFSSFLNCLQTTDSS-----SK-SPVRKQCVNLLTLLSRSHG 89 (595)
Q Consensus 18 ~lk~rvl~~L~KL~DrDT--~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss-----~k-p~vRKaaI~lLG~lAEg~g 89 (595)
+|.--+...|.|+++.-+ .++|..++-.|+..+.-..++.++.+=.|+.-. .+ ...-.+....+.++..--.
T Consensus 586 ~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~~~s~~~~~Vl~vVl~~s~ 665 (1014)
T KOG4524|consen 586 ELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTSGMSPRVPDVLMVVLQYSD 665 (1014)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccCCCCchhHHHHHHHhhcCC
Confidence 444556677889998775 456888899999998876677766654444210 00 1111244445555555555
Q ss_pred ccchhhHHHHHHHHHhhccCCC--h-----hHHHHHHHHH----------HHhhhhhcCCcchh--ccHHHHHHHhhcCC
Q 046417 90 DSLSPHLSKMISTVSCRLRDPD--S-----SVRSACVAAT----------TAMSLNITKPSFSV--LSKPLIELILVEQD 150 (595)
Q Consensus 90 d~I~PhLpkIL~~IvrrLkD~d--s-----~VR~Ac~~aL----------g~LA~~l~~~~~~~--~l~PLi~aLl~d~n 150 (595)
-...|||..++..|...|.--. + .+-.|-...+ |.+++|...+.... .++--+..+.+..+
T Consensus 666 ~~~i~~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~~~~~~~~il~~~~d~~~~~~~k~l~e~p~~~~e~~n~~~ 745 (1014)
T KOG4524|consen 666 YGTIPNLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMKKKYINDEILGHIADQHISQSTKVLNELPTQVKELINDEN 745 (1014)
T ss_pred CCchhhHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHhhcchhhHHHhhhhHH
Confidence 6667777777777776653321 1 1111111111 12222221100000 01111111110000
Q ss_pred hhHHHHHHHHHHHHH--------hc--------------CCC--------chHHHHHHHHHHHHHhhccCchhHHHHHHH
Q 046417 151 VNSQVGGAMCLAAAI--------DA--------------APN--------PEVEQLRKLLPRLGKAVRIEGFKAKAAVLG 200 (595)
Q Consensus 151 k~VQ~~AA~cLaavi--------E~--------------a~d--------~~~~~L~~Ll~rL~klL~~~~~kaK~alLs 200 (595)
...+..-..=..... ++ ... +-..++.+|+.|-.++|.++....|-.+|+
T Consensus 746 d~~~~l~~~~~e~~~~~~~~~~~dnee~~e~~~e~edens~~~d~ep~~~~qv~iv~kIl~r~~~~LS~e~l~irvkaLd 825 (1014)
T KOG4524|consen 746 DLKDDLEPSNFEKDFASKLREPDDNEEPEEREEEVEDENSEYTDTEPILPDQVKIVLKILGRGIHLLSHESLRIRVKALD 825 (1014)
T ss_pred HHHHhhhhHHHHHHhhhhccCCCcccCcCCCCCCccccccCCCCCCCCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 000111011011111 00 000 113478899999999999999999988899
Q ss_pred HHHHHHHhhc---ccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHH-HHHHHHHHHHhccCC-----
Q 046417 201 VIGSVVRVGG---ARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATE-YKRSCLAALETRRFD----- 271 (595)
Q Consensus 201 AIgSlA~a~g---~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~p-y~~~~I~~Le~crfD----- 271 (595)
++......-. ..+.|.+...-|.+++++..+|--+-..|+.||..+....|+++.. +...+++.|+..--|
T Consensus 826 vl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l~~~~~~~~~~~ 905 (1014)
T KOG4524|consen 826 VLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWLKHLCQDSFART 905 (1014)
T ss_pred HHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8886554321 1234445555566666667788788889999999999999987554 455555555532222
Q ss_pred chHHHHHHHHHHHHHhHhcC
Q 046417 272 KVKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 272 KVK~VRda~~~aL~~~K~i~ 291 (595)
+-+.+|.-..+---..|-|.
T Consensus 906 ~~~~~~~qta~yKlq~k~i~ 925 (1014)
T KOG4524|consen 906 ILKELRIQTAEYKLQLKSIS 925 (1014)
T ss_pred hhhhHHHHHHHHHHHHHHHh
Confidence 23556655444333334333
No 165
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.57 E-value=7.5 Score=44.89 Aligned_cols=101 Identities=20% Similarity=0.173 Sum_probs=71.5
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF 134 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~ 134 (595)
+.+++-+|.--..+.+-.+|+.++..|+.+...-++---....-++-.+..|+-|-++.||.-|+++|..+-+.-.++.
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee- 167 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE- 167 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH-
Confidence 6677777776667777899999999999999888753333444667788899999999999999999998876543221
Q ss_pred hhccHHHHHHHhhcCChhHHHHHH
Q 046417 135 SVLSKPLIELILVEQDVNSQVGGA 158 (595)
Q Consensus 135 ~~~l~PLi~aLl~d~nk~VQ~~AA 158 (595)
.++..++-.++ .++|......+
T Consensus 168 -n~~~n~l~~~v-qnDPS~EVRr~ 189 (885)
T COG5218 168 -NRIVNLLKDIV-QNDPSDEVRRL 189 (885)
T ss_pred -HHHHHHHHHHH-hcCcHHHHHHH
Confidence 23444555553 34555444433
No 166
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.53 E-value=5 Score=44.09 Aligned_cols=128 Identities=21% Similarity=0.241 Sum_probs=89.8
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC--
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP-- 132 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~-- 132 (595)
+--+|.++. +.+..+|+.++.=|-.+--.|++.+..|+-.+++.+..++.|-+..||.+....+--+...++.+
T Consensus 60 lkeLl~qlk----HhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~ 135 (393)
T KOG2149|consen 60 LKELLSQLK----HHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQ 135 (393)
T ss_pred HHHHHhhhc----CchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhh
Confidence 555555555 45689999999999888888999999999999999999999999999999988877766665532
Q ss_pred -cchh-ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Q 046417 133 -SFSV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAV 187 (595)
Q Consensus 133 -~~~~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL 187 (595)
++.. ++.-+..|| +.--+.+|..+..=|.-+++..++....+.-.+++.+...+
T Consensus 136 sp~~~l~~~yi~~AM-Thit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i 191 (393)
T KOG2149|consen 136 SPMVSLLMPYISSAM-THITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVI 191 (393)
T ss_pred cchHHHHHHHHHHHH-hhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 2222 333344444 56677788888777777777655533333333443333333
No 167
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=88.36 E-value=8.8 Score=34.74 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhhcc-CCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhhcCChhH-HHHHHHHHHHHHhc
Q 046417 95 HLSKMISTVSCRLR-DPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILVEQDVNS-QVGGAMCLAAAIDA 167 (595)
Q Consensus 95 hLpkIL~~IvrrLk-D~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~nk~V-Q~~AA~cLaaviE~ 167 (595)
+++.|+|++.+.|+ -..+..|-+|.--++.|+... ++. ..+..+++.+.......- +..+-.||..+++.
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~---~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV---PLSDEVLNALMESILKNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc---CCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence 68899999999999 777889999999999999876 333 377888888865443332 36788888888876
No 168
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.33 E-value=24 Score=42.03 Aligned_cols=211 Identities=17% Similarity=0.168 Sum_probs=107.4
Q ss_pred cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc---hhhHHHHHHH---------HHhhccCCChhHHHHHH
Q 046417 52 QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL---SPHLSKMIST---------VSCRLRDPDSSVRSACV 119 (595)
Q Consensus 52 ~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I---~PhLpkIL~~---------IvrrLkD~ds~VR~Ac~ 119 (595)
+..+.+-+..|+-..+++++..|-++++-|-.+|-.|+..+ ..-|..++.- |..+|+-....--+.-.
T Consensus 277 ~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm 356 (865)
T KOG1078|consen 277 SRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLM 356 (865)
T ss_pred HhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHH
Confidence 33466677788887889999999999999999999998766 3445555542 22233322111111111
Q ss_pred HHHHHhhhhhcCC----------------cc-h-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH-----
Q 046417 120 AATTAMSLNITKP----------------SF-S-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL----- 176 (595)
Q Consensus 120 ~aLg~LA~~l~~~----------------~~-~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L----- 176 (595)
..+..+...+.++ |. . .++.=|...|..+..-.-..+..=|+-.++|..++.-...|
T Consensus 357 ~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCe 436 (865)
T KOG1078|consen 357 KQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCE 436 (865)
T ss_pred HHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 1222222333221 00 0 01111222221111111112222233333333222211111
Q ss_pred -------HHHHHHHHHhhcc---------------------CchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhc
Q 046417 177 -------RKLLPRLGKAVRI---------------------EGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFL 228 (595)
Q Consensus 177 -------~~Ll~rL~klL~~---------------------~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L 228 (595)
..|..|++++|.. .++.++++++.|+..+. ++ .....+.+.-.|+.|+
T Consensus 437 fIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg-~~---~~~l~~sI~vllkRc~ 512 (865)
T KOG1078|consen 437 FIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG-AQ---DVVLLPSILVLLKRCL 512 (865)
T ss_pred HHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh-cC---CCCccccHHHHHHHHh
Confidence 2344566666631 23346666666666544 11 1233466777888999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhHHhHHHH--HHHHHHHHH
Q 046417 229 CCDDWATRKAAAEVLGKVAVFDKDLATEY--KRSCLAALE 266 (595)
Q Consensus 229 ~~dDW~~RkaAaEaLgsIA~avge~f~py--~~~~I~~Le 266 (595)
.|.|-.+|-.|.=+|..+-..-.....+| ...||.-||
T Consensus 513 ~D~DdevRdrAtf~l~~l~~~~~~l~~~~~~l~~s~~~le 552 (865)
T KOG1078|consen 513 NDSDDEVRDRATFYLKNLEEKDDVLNQNYSGLFVSIPGLE 552 (865)
T ss_pred cCchHHHHHHHHHHHHHhhhhhhhhcccccccccccchhH
Confidence 99999999999988888864333333333 234455555
No 169
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=88.02 E-value=15 Score=43.12 Aligned_cols=124 Identities=8% Similarity=0.140 Sum_probs=87.5
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccchhhH
Q 046417 19 LKQRVITCLNKLADRDTLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSLSPHL 96 (595)
Q Consensus 19 lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I~PhL 96 (595)
+.-.+.-++++-.-.++.-+=++-+|.|.+.++++. ...+|+.|..+.++.+....+.++..++.++|.-. -.+..
T Consensus 350 ~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~-- 427 (700)
T KOG2137|consen 350 MLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQ-- 427 (700)
T ss_pred hhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHH--
Confidence 334444455543344567778888899999999766 88999999998888889999999999999999885 22222
Q ss_pred HHHHHHHHh-hccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHH
Q 046417 97 SKMISTVSC-RLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELI 145 (595)
Q Consensus 97 pkIL~~Ivr-rLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aL 145 (595)
.|+|.|-. .++.....|+..|+-+++.+++.+-.......+.|++..+
T Consensus 428 -~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~ 476 (700)
T KOG2137|consen 428 -AILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI 476 (700)
T ss_pred -HHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 23333333 3667788899999999999996663211112566666666
No 170
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=87.90 E-value=49 Score=37.10 Aligned_cols=238 Identities=14% Similarity=0.078 Sum_probs=127.0
Q ss_pred CCCCChhHHHHHHHHHhhhcCCCC---hHHHHHHHHHHHHHhCCc---CcHHHHHHhhhhcCCCC-ChHHHHHHHHHHHH
Q 046417 11 SPPPSTNDLKQRVITCLNKLADRD---TLPVATAELESIARTLTQ---DSFSSFLNCLQTTDSSS-KSPVRKQCVNLLTL 83 (595)
Q Consensus 11 ~~~~~~~~lk~rvl~~L~KL~DrD---T~r~A~~~LD~lA~~L~~---~~lp~fL~~L~d~~ss~-kp~vRKaaI~lLG~ 83 (595)
-..|..++|=+.+++.+.+-+..+ --||-+..|-.+-..+.| ..++.+...|.....++ ||..=-...-.+|+
T Consensus 19 di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~ 98 (435)
T PF03378_consen 19 DIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGA 98 (435)
T ss_dssp GTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Confidence 345667888888888888844322 344444444443333322 12445555554433333 56666777788888
Q ss_pred HHHHcc----ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc----hhccHHHHHHHhhcCChhHHH
Q 046417 84 LSRSHG----DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF----SVLSKPLIELILVEQDVNSQV 155 (595)
Q Consensus 84 lAEg~g----d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~----~~~l~PLi~aLl~d~nk~VQ~ 155 (595)
+.+.+. +.+..+-+.++|.+..-|+..=...--=+-.-|+.|-+.....+. ..+++||+..-+-+..-++-.
T Consensus 99 lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPa 178 (435)
T PF03378_consen 99 LIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPA 178 (435)
T ss_dssp HHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHH
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCc
Confidence 877643 444455556666666555433211111112233444444321111 125555554443344445543
Q ss_pred HHHHHHHHHHhcCCCchH--HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc-ccCcCcHHhHHHHHHHhcc-CC
Q 046417 156 GGAMCLAAAIDAAPNPEV--EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG-ARSKGVLDWLVPCLVEFLC-CD 231 (595)
Q Consensus 156 ~AA~cLaaviE~a~d~~~--~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g-~~~~~yl~~lmp~L~e~L~-~d 231 (595)
-.. -|.++++-.+..+. ++++.++..+-|++.+..... ...+.+.+++.... ....+|++.++..|...|. +.
T Consensus 179 lvr-LL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~--~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~sk 255 (435)
T PF03378_consen 179 LVR-LLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDH--YGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSK 255 (435)
T ss_dssp HHH-HHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHH--HHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC-
T ss_pred HHH-HHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcch--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence 322 37777776544442 588899999999998775443 34577888887543 3457899999888888886 34
Q ss_pred CHHHHHHHHHHHHHHHHHhH
Q 046417 232 DWATRKAAAEVLGKVAVFDK 251 (595)
Q Consensus 232 DW~~RkaAaEaLgsIA~avg 251 (595)
-+.-.+.-+-.++.++...|
T Consensus 256 T~kf~~~fv~F~~~~~~~~g 275 (435)
T PF03378_consen 256 TEKFVKRFVVFLSLFAIKYG 275 (435)
T ss_dssp -HHHHHHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHHHHcC
Confidence 44555555555565555444
No 171
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=87.63 E-value=46 Score=39.79 Aligned_cols=151 Identities=9% Similarity=0.023 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHHhCCcCcHHHHHHhhh-hc---CCCCChHHHHHHHHHHHHHHHHcc---------ccc-hhhHHHHH
Q 046417 35 TLPVATAELESIARTLTQDSFSSFLNCLQ-TT---DSSSKSPVRKQCVNLLTLLSRSHG---------DSL-SPHLSKMI 100 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~-d~---~ss~kp~vRKaaI~lLG~lAEg~g---------d~I-~PhLpkIL 100 (595)
+.|--+.-+-.....++|+.+-.++..-. .+ ..+..|..-+.+|.++-.++|+-. |.. ..-|-.++
T Consensus 414 e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~ 493 (980)
T KOG2021|consen 414 EVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNE 493 (980)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHH
Confidence 33444444433444455655333333222 22 244568999999999999999863 222 23455677
Q ss_pred HHHHhh--ccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh-----cCChhHHHHHHHHHHHHHhcCCCchH
Q 046417 101 STVSCR--LRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV-----EQDVNSQVGGAMCLAAAIDAAPNPEV 173 (595)
Q Consensus 101 ~~Ivrr--LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~-----d~nk~VQ~~AA~cLaaviE~a~d~~~ 173 (595)
+.++.. +..+++.|.--=.+.+.++.......+ ..++-++.+.++ +++.+|.-+|.|-+-+++-.....+.
T Consensus 494 ~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~es--q~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlv 571 (980)
T KOG2021|consen 494 LLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTES--QKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLV 571 (980)
T ss_pred HHHHHcccccCCchHHHHHHHHHHHHHHHHHhcch--hhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHH
Confidence 777654 677888888888888888887774322 355566666543 67888999999999999988777677
Q ss_pred HHHHHHHHHHHHhh
Q 046417 174 EQLRKLLPRLGKAV 187 (595)
Q Consensus 174 ~~L~~Ll~rL~klL 187 (595)
||.++++.+|..+|
T Consensus 572 pfie~iln~iqdlL 585 (980)
T KOG2021|consen 572 PFIEEILNKIQDLL 585 (980)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888777
No 172
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=87.55 E-value=3.9 Score=37.15 Aligned_cols=90 Identities=17% Similarity=0.208 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhhccC----chhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 046417 174 EQLRKLLPRLGKAVRIE----GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF 249 (595)
Q Consensus 174 ~~L~~Ll~rL~klL~~~----~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a 249 (595)
+++--|+.+|...+.+. .+.-|...|.+|+-++..+|..-..+.+++|-+|+..|..++ +|..|++|...+...
T Consensus 7 ~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~ 84 (107)
T smart00802 7 DHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHh
Confidence 45556777777777654 344577888999999987766556778888999999997665 899999999999988
Q ss_pred hH-HhHHHHHHHHHHHH
Q 046417 250 DK-DLATEYKRSCLAAL 265 (595)
Q Consensus 250 vg-e~f~py~~~~I~~L 265 (595)
+. +-+.+....++.++
T Consensus 85 L~~~~l~~ll~~~~~~i 101 (107)
T smart00802 85 LKEEELGPLLDQIFAAI 101 (107)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 85 56666666655544
No 173
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=87.41 E-value=47 Score=36.00 Aligned_cols=247 Identities=13% Similarity=0.131 Sum_probs=139.5
Q ss_pred ChhHHHHHHHHHhhhcC--CCChHHHHHHHHHHHHHh------------------------C-CcCcHHHHHHhhhhcCC
Q 046417 15 STNDLKQRVITCLNKLA--DRDTLPVATAELESIART------------------------L-TQDSFSSFLNCLQTTDS 67 (595)
Q Consensus 15 ~~~~lk~rvl~~L~KL~--DrDT~r~A~~~LD~lA~~------------------------L-~~~~lp~fL~~L~d~~s 67 (595)
++.|+-+.+...|.+|+ ..+..+-+.+++...... + ..+.+..++.+|..
T Consensus 11 tP~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~dll~~Li~~L~~--- 87 (335)
T PF08569_consen 11 TPAELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRSDLLYLLIRNLPK--- 87 (335)
T ss_dssp -HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHTHHHHHHHTGGG---
T ss_pred CHHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHHHhhh---
Confidence 35678888888888882 112333344443332211 1 11223444444443
Q ss_pred CCChHHHHHHHHHHHHHHHHcc--------ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc-----
Q 046417 68 SSKSPVRKQCVNLLTLLSRSHG--------DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF----- 134 (595)
Q Consensus 68 s~kp~vRKaaI~lLG~lAEg~g--------d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~----- 134 (595)
-+...||.+...++.+-+... +++..|.|+|+..+++.-.+||..+ ..|.|-+.+++-+.
T Consensus 88 -L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial------~~g~mlRec~k~e~l~~~i 160 (335)
T PF08569_consen 88 -LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL------NCGDMLRECIKHESLAKII 160 (335)
T ss_dssp -S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH------HHHHHHHHHTTSHHHHHHH
T ss_pred -CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc------hHHHHHHHHHhhHHHHHHH
Confidence 457999999999999988763 3455666999999999999998432 23555555544211
Q ss_pred --hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH----HHHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 046417 135 --SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL----RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRV 208 (595)
Q Consensus 135 --~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L----~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a 208 (595)
...+..+++.+ ...+-.+...|..-+..+.-.-.....+|| ..+...+.++|.+++|-+|-+.|-.+|.+.--
T Consensus 161 L~~~~f~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 161 LYSECFWKFFKYV-QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp HTSGGGGGHHHHT-TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred hCcHHHHHHHHHh-cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence 01444566665 344444554444444444433222223455 46777889999999999999999999988842
Q ss_pred --hcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh------HHhHHHHHHHHHHHHHhccCCc
Q 046417 209 --GGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD------KDLATEYKRSCLAALETRRFDK 272 (595)
Q Consensus 209 --~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av------ge~f~py~~~~I~~Le~crfDK 272 (595)
.-.....|+ +.-+-.+...|.+..-..|..|.-..-....-- -+.+..=....++.|....-|+
T Consensus 240 r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 240 RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT-
T ss_pred hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 111112222 223455556667777777888877777665432 1223323467788888777776
No 174
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.21 E-value=11 Score=44.49 Aligned_cols=159 Identities=16% Similarity=0.122 Sum_probs=89.7
Q ss_pred CCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhh-ccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHH
Q 046417 66 DSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCR-LRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIEL 144 (595)
Q Consensus 66 ~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr-LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~a 144 (595)
..+.+|-.|..++..++..=-|-|.. ++|..++.- ..|++-.||+|++-+||-+. ++.| ..++-.++.
T Consensus 528 ~~dkdpilR~~Gm~t~alAy~GTgnn------kair~lLh~aVsD~nDDVrRaAVialGFVl---~~dp--~~~~s~V~l 596 (929)
T KOG2062|consen 528 LRDKDPILRYGGMYTLALAYVGTGNN------KAIRRLLHVAVSDVNDDVRRAAVIALGFVL---FRDP--EQLPSTVSL 596 (929)
T ss_pred hcCCchhhhhhhHHHHHHHHhccCch------hhHHHhhcccccccchHHHHHHHHHheeeE---ecCh--hhchHHHHH
Confidence 34457999999998877655555532 223333322 57888899999998887654 2333 245556666
Q ss_pred HhhcCChhHHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHH
Q 046417 145 ILVEQDVNSQVGGAMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPC 223 (595)
Q Consensus 145 Ll~d~nk~VQ~~AA~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~ 223 (595)
|...-|++|.-|||+||--+|-+.+... ...|+.|+ + +-.+|-.+.|+|..-=-+.+..... -|-+..+-..
T Consensus 597 Lses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~----~--D~~~fVRQgAlIa~amIm~Q~t~~~-~pkv~~frk~ 669 (929)
T KOG2062|consen 597 LSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLT----S--DPVDFVRQGALIALAMIMIQQTEQL-CPKVNGFRKQ 669 (929)
T ss_pred HhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhh----c--ChHHHHHHHHHHHHHHHHHhccccc-CchHHHHHHH
Confidence 6456699999999999999887754422 22333322 2 2235544555443222222333332 2333444455
Q ss_pred HHHhcc--CCCHHHHHHHHHH
Q 046417 224 LVEFLC--CDDWATRKAAAEV 242 (595)
Q Consensus 224 L~e~L~--~dDW~~RkaAaEa 242 (595)
+...+. ++|-.+..-|+-+
T Consensus 670 l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 670 LEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred HHHHhhhhhhHHHHHHHHHHH
Confidence 555554 3454444444433
No 175
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=87.09 E-value=76 Score=38.04 Aligned_cols=203 Identities=14% Similarity=0.146 Sum_probs=119.1
Q ss_pred HHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc--cccchhhHHHHHHHHHhhccCCChhHHHHHHHH-HHHhhhhhcCCc
Q 046417 57 SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH--GDSLSPHLSKMISTVSCRLRDPDSSVRSACVAA-TTAMSLNITKPS 133 (595)
Q Consensus 57 ~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~--gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~a-Lg~LA~~l~~~~ 133 (595)
-.+.|+.+ ..-+++=++.+|+-.+-..- .+.+..|+|.+|..++..-++=+..+-.-|.+. ++++++.+. |
T Consensus 503 ~t~ncl~n----n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELs--p 576 (970)
T COG5656 503 NTHNCLKN----NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELS--P 576 (970)
T ss_pred HHHHHHhc----CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhc--h
Confidence 34445544 22467777777776655433 477899999999999999999888777777666 477777774 3
Q ss_pred chh---------ccHHHHHHHhhcC---Ch---hHHHHHHHHHHH---HHhcCCC-c-hHHHH-----------------
Q 046417 134 FSV---------LSKPLIELILVEQ---DV---NSQVGGAMCLAA---AIDAAPN-P-EVEQL----------------- 176 (595)
Q Consensus 134 ~~~---------~l~PLi~aLl~d~---nk---~VQ~~AA~cLaa---viE~a~d-~-~~~~L----------------- 176 (595)
+.. |++ +...++.+. .. .-|.+|..-|.. ++=+... + ++.|+
T Consensus 577 fa~eLa~~Lv~qFlk-iaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~ 655 (970)
T COG5656 577 FAPELAGSLVRQFLK-IAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEIS 655 (970)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHH
Confidence 321 332 333332211 11 124444433333 2211111 0 11111
Q ss_pred ------------------------HHHHHHHHHhhccCch-hHHHHHHHHHHHHHHhhcccC---cCcHHhHHHHHHHhc
Q 046417 177 ------------------------RKLLPRLGKAVRIEGF-KAKAAVLGVIGSVVRVGGARS---KGVLDWLVPCLVEFL 228 (595)
Q Consensus 177 ------------------------~~Ll~rL~klL~~~~~-kaK~alLsAIgSlA~a~g~~~---~~yl~~lmp~L~e~L 228 (595)
..+.+.+.++++.+.. .--..+..++..++..|+..| .-|...+...+..++
T Consensus 656 dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l 735 (970)
T COG5656 656 DFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCL 735 (970)
T ss_pred HHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHH
Confidence 1233334444444432 112344467777777776543 456666777777788
Q ss_pred cCCCH--HHHHHHHHHHHHHHHHhHH-hHHHHHHHHHHHHH
Q 046417 229 CCDDW--ATRKAAAEVLGKVAVFDKD-LATEYKRSCLAALE 266 (595)
Q Consensus 229 ~~dDW--~~RkaAaEaLgsIA~avge-~f~py~~~~I~~Le 266 (595)
.+++- ..+..+++.+..++..+++ ...+|.+..+.+.-
T Consensus 736 ~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vag 776 (970)
T COG5656 736 CSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAG 776 (970)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHh
Confidence 76654 7899999999999999974 88888877666544
No 176
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=87.02 E-value=1.6 Score=39.68 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHHcccc----------------chhhHHHHHHHHHhhccCCC----hhHHHHHHHHHHHhhhhhc
Q 046417 71 SPVRKQCVNLLTLLSRSHGDS----------------LSPHLSKMISTVSCRLRDPD----SSVRSACVAATTAMSLNIT 130 (595)
Q Consensus 71 p~vRKaaI~lLG~lAEg~gd~----------------I~PhLpkIL~~IvrrLkD~d----s~VR~Ac~~aLg~LA~~l~ 130 (595)
+......+..|..+.|-..+. +..+++.|+.++.+.|.... ..+..++..+++.+..|+.
T Consensus 39 ~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~ 118 (148)
T PF08389_consen 39 PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP 118 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-
T ss_pred hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC
Confidence 677777888888877777542 55567888888888887765 6678888888888888763
Q ss_pred CCcch--hccHHHHHHHhhcCChhHHHHHHHHH
Q 046417 131 KPSFS--VLSKPLIELILVEQDVNSQVGGAMCL 161 (595)
Q Consensus 131 ~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cL 161 (595)
-.... .++.-++..| +++..+..|+-||
T Consensus 119 ~~~i~~~~~l~~~~~~l---~~~~~~~~A~~cl 148 (148)
T PF08389_consen 119 IELIINSNLLNLIFQLL---QSPELREAAAECL 148 (148)
T ss_dssp HHHHHSSSHHHHHHHHT---TSCCCHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHc---CCHHHHHHHHHhC
Confidence 11111 1455555555 3445688888876
No 177
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=86.46 E-value=41 Score=35.83 Aligned_cols=204 Identities=14% Similarity=0.126 Sum_probs=105.8
Q ss_pred HHHHHHHHhhhcCCCChHHHHHH-HHHHHHHhC---CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHH-----Hcc
Q 046417 19 LKQRVITCLNKLADRDTLPVATA-ELESIARTL---TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSR-----SHG 89 (595)
Q Consensus 19 lk~rvl~~L~KL~DrDT~r~A~~-~LD~lA~~L---~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAE-----g~g 89 (595)
+-.++++.|..+-..|+...|+. +++.++.++ ..+.-..++..+..-..+-++.+|+.-+.++|.+.. ...
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 45555555555544465555443 335555554 222233444555444555678899999999999885 445
Q ss_pred ccchhhHHHHHHHHHhhccCCChhHH---HHHHHHHHHhhhhhcC--------------Ccchh-ccHH-HHHHHhhcCC
Q 046417 90 DSLSPHLSKMISTVSCRLRDPDSSVR---SACVAATTAMSLNITK--------------PSFSV-LSKP-LIELILVEQD 150 (595)
Q Consensus 90 d~I~PhLpkIL~~IvrrLkD~ds~VR---~Ac~~aLg~LA~~l~~--------------~~~~~-~l~P-Li~aLl~d~n 150 (595)
.++.+.+|.++.++-+....|-+... -.|+.++-.+..+..+ .+-.. ++.+ ++.-| .+
T Consensus 99 ~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl---~~ 175 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL---AS 175 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc---CC
Confidence 66777778888877777777655432 1122222111111100 00001 1211 22222 12
Q ss_pred hhHHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHhhccC--chhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHh
Q 046417 151 VNSQVGGAMCLAAAIDAAPNPEV-EQLRKLLPRLGKAVRIE--GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEF 227 (595)
Q Consensus 151 k~VQ~~AA~cLaaviE~a~d~~~-~~L~~Ll~rL~klL~~~--~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~ 227 (595)
.....-.+.+|.++......... .....+...++.++-++ ..++|..+++++..+....... +-..++..+-++
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~---l~~~li~~l~~~ 252 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL---LSKSLISGLWKW 252 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH---HHHHHHHHHHHH
Confidence 22233445555555544322221 12345666677777777 7889988888888777543221 234445555544
Q ss_pred c
Q 046417 228 L 228 (595)
Q Consensus 228 L 228 (595)
+
T Consensus 253 l 253 (339)
T PF12074_consen 253 L 253 (339)
T ss_pred H
Confidence 4
No 178
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=86.45 E-value=5.7 Score=42.89 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=78.4
Q ss_pred HHHHHHHhCC-cCcHHHHHHhhhhcCC--CC-ChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc----------
Q 046417 42 ELESIARTLT-QDSFSSFLNCLQTTDS--SS-KSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL---------- 107 (595)
Q Consensus 42 ~LD~lA~~L~-~~~lp~fL~~L~d~~s--s~-kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL---------- 107 (595)
.|+.|.+.-. ...+|.|+..|.+... .. +...=...++.+-.|..--.=++-|||..|||.++..|
T Consensus 198 aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~ 277 (343)
T cd08050 198 ALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPP 277 (343)
T ss_pred HHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCC
Confidence 4556666443 2237777777766531 11 34444444555555554445677999999999888665
Q ss_pred cCCChhHHHHHHHHHHHhhhhhcCC-c-chh-ccHHHHHHHhhcCChh-HHHHHHHHHHHHHh
Q 046417 108 RDPDSSVRSACVAATTAMSLNITKP-S-FSV-LSKPLIELILVEQDVN-SQVGGAMCLAAAID 166 (595)
Q Consensus 108 kD~ds~VR~Ac~~aLg~LA~~l~~~-~-~~~-~l~PLi~aLl~d~nk~-VQ~~AA~cLaaviE 166 (595)
-+.+-.+|+-++..|+.++..+... + ... ++.-|..+|+....+. .+-||..+|.++..
T Consensus 278 ~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 278 DDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALGP 340 (343)
T ss_pred CchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhCc
Confidence 2333478999999999999887542 1 112 5666777776444333 36788888888753
No 179
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.05 E-value=83 Score=37.50 Aligned_cols=237 Identities=19% Similarity=0.168 Sum_probs=139.7
Q ss_pred hHHHHHHHHHhhhcCCCChHHH--HHHHHHHHH-----HhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc
Q 046417 17 NDLKQRVITCLNKLADRDTLPV--ATAELESIA-----RTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG 89 (595)
Q Consensus 17 ~~lk~rvl~~L~KL~DrDT~r~--A~~~LD~lA-----~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g 89 (595)
+-+|.-+.++-+-|..||+-.+ |++.+-.+. +.+.+ .|+ -|.-+ .+....+|+.+.++|=.+-+..+
T Consensus 107 dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~-DI~----KlLvS-~~~~~~vkqkaALclL~L~r~sp 180 (938)
T KOG1077|consen 107 DLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFAD-DIP----KLLVS-GSSMDYVKQKAALCLLRLFRKSP 180 (938)
T ss_pred HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhh-hhH----HHHhC-CcchHHHHHHHHHHHHHHHhcCc
Confidence 4455556666677877774443 555554433 22211 233 22221 22346888888888888888899
Q ss_pred ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh-ccHHHHHHHh-------hc---------CChh
Q 046417 90 DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV-LSKPLIELIL-------VE---------QDVN 152 (595)
Q Consensus 90 d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~aLl-------~d---------~nk~ 152 (595)
|.+.|. .-..-|+..|.|.+=.|-.|+.--+-.|+....+ ... -+.+-+.-|. .+ +.|-
T Consensus 181 Dl~~~~--~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~--~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW 256 (938)
T KOG1077|consen 181 DLVNPG--EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE--SYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW 256 (938)
T ss_pred cccChh--hHHHHHHHHhCccccceeeehHHHHHHHHHcCCH--HHhhhHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence 988762 2234566788999877776666555555544421 111 1222222221 01 3456
Q ss_pred HHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHhhc----cC---chhHHHHHH-HHHHHHHHhhcccCcCcHHhHHHH
Q 046417 153 SQVGGAMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVR----IE---GFKAKAAVL-GVIGSVVRVGGARSKGVLDWLVPC 223 (595)
Q Consensus 153 VQ~~AA~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~----~~---~~kaK~alL-sAIgSlA~a~g~~~~~yl~~lmp~ 223 (595)
.|.-.+..|... +...|+. ...|..++.+++...+ .. +..+|+++| +||.-++..-. .+..+...+..
T Consensus 257 L~vKl~rlLq~~-p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~--e~~ll~~~~~~ 333 (938)
T KOG1077|consen 257 LQVKLLRLLQIY-PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDS--EPELLSRAVNQ 333 (938)
T ss_pred HHHHHHHHHHhC-CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCC--cHHHHHHHHHH
Confidence 777777766655 2222222 3455566666655544 22 333777777 78776665432 24667888999
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHh--HHhHHHHHHHHHHHHH
Q 046417 224 LVEFLCCDDWATRKAAAEVLGKVAVFD--KDLATEYKRSCLAALE 266 (595)
Q Consensus 224 L~e~L~~dDW~~RkaAaEaLgsIA~av--ge~f~py~~~~I~~Le 266 (595)
|..||++.+-..|--|+|.+..++..- -+.+.-|...+|..|.
T Consensus 334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLk 378 (938)
T KOG1077|consen 334 LGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLK 378 (938)
T ss_pred HHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhc
Confidence 999999988889999999999998753 2455555555555444
No 180
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=85.90 E-value=43 Score=37.55 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHhCCcCcHHHHHH-hhhhcCCCCChHHHHHHHHHHHHHHHHcc
Q 046417 35 TLPVATAELESIARTLTQDSFSSFLN-CLQTTDSSSKSPVRKQCVNLLTLLSRSHG 89 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~lp~fL~-~L~d~~ss~kp~vRKaaI~lLG~lAEg~g 89 (595)
++-.|+..|-.+...++.+.+..++. .|..++++.-...|--+.+.+..-|..+.
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~ 158 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACK 158 (441)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCc
Confidence 56678899999999998777766665 46666666667888888888888888776
No 181
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.67 E-value=15 Score=42.37 Aligned_cols=108 Identities=21% Similarity=0.195 Sum_probs=73.5
Q ss_pred hhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhh-ccCCChhHHHHHHHHHHHhhhhhcCCcchhccH
Q 046417 61 CLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCR-LRDPDSSVRSACVAATTAMSLNITKPSFSVLSK 139 (595)
Q Consensus 61 ~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr-LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~ 139 (595)
.|.+...+.+|..|-+++..++..--|-|.. .++..++.- ..|.+-.||.|++-|||-++ ++++ ..+.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn~------~vv~~lLh~avsD~nDDVrRAAViAlGfvc---~~D~--~~lv 588 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGNL------GVVSTLLHYAVSDGNDDVRRAAVIALGFVC---CDDR--DLLV 588 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCcc------hhHhhhheeecccCchHHHHHHHHheeeeE---ecCc--chhh
Confidence 4444455677899999998887766666643 344444443 68889999999998877654 3332 2455
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch-HHHHHHH
Q 046417 140 PLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE-VEQLRKL 179 (595)
Q Consensus 140 PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~-~~~L~~L 179 (595)
-.++.|....|.+|..+.|.||--+|-+.++.. ...|..|
T Consensus 589 ~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L 629 (926)
T COG5116 589 GTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEAL 629 (926)
T ss_pred HHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHH
Confidence 566666556789999999999999988866533 2344443
No 182
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=85.52 E-value=28 Score=37.53 Aligned_cols=138 Identities=15% Similarity=0.078 Sum_probs=75.0
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHhh----------ccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhc----
Q 046417 163 AAIDAAPNPEVEQLRKLLPRLGKAV----------RIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFL---- 228 (595)
Q Consensus 163 aviE~a~d~~~~~L~~Ll~rL~klL----------~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L---- 228 (595)
++..+-.-.+.||++.|||-++.+| ++.++-+|-.+.+.++-+. ..|...+..+-|.+...+
T Consensus 262 sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~----~~F~~~YktLkPRvtrTllKaf 337 (450)
T COG5095 262 SLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVF----SNFSSSYKTLKPRVTRTLLKAF 337 (450)
T ss_pred HHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH----hhhhHhhhhhchHHHHHHHHHH
Confidence 3444434445699999999998877 2334434433333333332 334444555555554433
Q ss_pred -c-CCCHHHHHHHHHHHHHHHHHh-----HHhHHHHHHHHHHHHH---hccCCchHHHHHHHHHHHHHhHhcCCCCCCCC
Q 046417 229 -C-CDDWATRKAAAEVLGKVAVFD-----KDLATEYKRSCLAALE---TRRFDKVKIVRETMNRSLEMWKEVPGVCEEVS 298 (595)
Q Consensus 229 -~-~dDW~~RkaAaEaLgsIA~av-----ge~f~py~~~~I~~Le---~crfDKVK~VRda~~~aL~~~K~i~~~~~~~~ 298 (595)
. ..-..+--.|+-+|..+...+ +..+.-|...+-+-|+ +-..|.-..|=|++..||-.++.-.-.++-+.
T Consensus 338 LD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle~~~e~~~~e~n~~vd~l~dalliL~~d~Lpnqr~~ 417 (450)
T COG5095 338 LDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLEKGNEEEIYENNRVVDLLKDALLILQSDGLPNQRTL 417 (450)
T ss_pred HhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHhccchhhcccchHHHHHHHHHHHHHhccCCCCccCC
Confidence 2 223445566777887775533 3223333333322232 22233345677888999988887544445666
Q ss_pred CCCCCC
Q 046417 299 SPSPSK 304 (595)
Q Consensus 299 ~p~~s~ 304 (595)
+|..++
T Consensus 418 ~~n~~~ 423 (450)
T COG5095 418 PPNASG 423 (450)
T ss_pred CCcHHH
Confidence 665554
No 183
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=85.51 E-value=39 Score=36.91 Aligned_cols=196 Identities=14% Similarity=0.056 Sum_probs=102.3
Q ss_pred CCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHH------HHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHH
Q 046417 50 LTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLS------RSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAAT 122 (595)
Q Consensus 50 L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lA------Eg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aL 122 (595)
++++. |..+-+.|.-+ +.+|..+-.++.-+|-+- ...++.+..-++..+.-...-+.-.|+.-..|+.++|
T Consensus 251 laQeglIdlicnIIsGa--dsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDal 328 (524)
T KOG4413|consen 251 LAQEGLIDLICNIISGA--DSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDAL 328 (524)
T ss_pred cchhhHHHHHHHHhhCC--CCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHH
Confidence 45555 44444444433 345665554555544332 1122344444444444444555567778899999999
Q ss_pred HHhhhhhcCCcch-hccHHHHHHHh---hcCChh-HHHHHHHHHHHHHhcCCCch--------HHHHHH-----------
Q 046417 123 TAMSLNITKPSFS-VLSKPLIELIL---VEQDVN-SQVGGAMCLAAAIDAAPNPE--------VEQLRK----------- 178 (595)
Q Consensus 123 g~LA~~l~~~~~~-~~l~PLi~aLl---~d~nk~-VQ~~AA~cLaaviE~a~d~~--------~~~L~~----------- 178 (595)
|+|.....-.... ..-+|-++.|+ .+++++ -|.++.-||+++--...... ...+..
T Consensus 329 GilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstk 408 (524)
T KOG4413|consen 329 GILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTK 408 (524)
T ss_pred HhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccC
Confidence 9999765311100 12233444432 367766 58889999998765432111 111211
Q ss_pred --HHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHH---HHHHHhccCCCHHHHHHHHHHHHHHHHHhHHh
Q 046417 179 --LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLV---PCLVEFLCCDDWATRKAAAEVLGKVAVFDKDL 253 (595)
Q Consensus 179 --Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lm---p~L~e~L~~dDW~~RkaAaEaLgsIA~avge~ 253 (595)
=+.-|...+..+....+-+.+....+|+. .|+....| |-++++..|-.-..-|+|-|+=+....++.+.
T Consensus 409 ldPleLFlgilqQpfpEihcAalktfTAiaa------qPWalkeifakeefieiVtDastEhaKaakdAkYeccKAiaea 482 (524)
T KOG4413|consen 409 LDPLELFLGILQQPFPEIHCAALKTFTAIAA------QPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAEA 482 (524)
T ss_pred CChHHHHHHHHcCCChhhHHHHHHHHHHHHc------CcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHHH
Confidence 11234455566677777777776666652 23221111 22334445555555677777666665555443
No 184
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=85.50 E-value=5.3 Score=39.21 Aligned_cols=97 Identities=14% Similarity=0.204 Sum_probs=70.3
Q ss_pred ccchhhHHHHHHHHHhhccC-CC-----------------hhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhhcCC
Q 046417 90 DSLSPHLSKMISTVSCRLRD-PD-----------------SSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILVEQD 150 (595)
Q Consensus 90 d~I~PhLpkIL~~IvrrLkD-~d-----------------s~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~n 150 (595)
+.|.|||+.|+|.+..-++= ++ -.+|.+|-++|-.+-+.+...-.. .|+.-+..+| .| +
T Consensus 1 ~li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL-~D-~ 78 (169)
T PF08623_consen 1 DLIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGL-KD-E 78 (169)
T ss_dssp GGTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTT-SS--
T ss_pred CchHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhc-CC-c
Confidence 35789999999999966543 21 458999999998887765432111 2555566666 56 7
Q ss_pred hhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhc
Q 046417 151 VNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVR 188 (595)
Q Consensus 151 k~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~ 188 (595)
..++.-++.-|.+++...+..+...|..|++.|-+.|+
T Consensus 79 ~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 79 HDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 77898899999999998887777778888888888774
No 185
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=85.49 E-value=11 Score=46.76 Aligned_cols=185 Identities=16% Similarity=0.115 Sum_probs=122.9
Q ss_pred HHHhhhcCCCCh-------HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH
Q 046417 24 ITCLNKLADRDT-------LPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL 96 (595)
Q Consensus 24 l~~L~KL~DrDT-------~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL 96 (595)
.-+|++++|-=+ +..-++.|..+.+++....+...+.++......+.|..|-.+++.+-......-|.+...+
T Consensus 127 v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~ 206 (1549)
T KOG0392|consen 127 VLALDRFGDFISDNVVAPVREACAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL 206 (1549)
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH
Confidence 345677776432 3345678999999998888888888888887777899999988888777778889999999
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc--ch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc-h
Q 046417 97 SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS--FS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP-E 172 (595)
Q Consensus 97 pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~--~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~-~ 172 (595)
+.++.+++..|.|++-.||..++.++...+....+.. .+ .++.-+...|.. -+- .-.+.+.-...+.+-..+. .
T Consensus 207 ~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~-ldd-l~~s~~si~~ll~~l~~~~ev 284 (1549)
T KOG0392|consen 207 NLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLE-LDD-LSSSTASIMHLLDELCIENEV 284 (1549)
T ss_pred HHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHH-hhh-cchhhHHHHHHHHHHhhhHHH
Confidence 9999999999999999999999988877776553211 11 144444444432 111 1111111111111111111 1
Q ss_pred HH-----HH-HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc
Q 046417 173 VE-----QL-RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG 210 (595)
Q Consensus 173 ~~-----~L-~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g 210 (595)
.. -+ ..|.|++.-.+++.-..++.++++.+..+-.+..
T Consensus 285 l~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 285 LDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11 11 2577888888888877888888887777766553
No 186
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=85.43 E-value=43 Score=35.30 Aligned_cols=148 Identities=16% Similarity=0.186 Sum_probs=79.7
Q ss_pred ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc----CchhHHHHHHHHHHHHHHhhccc
Q 046417 137 LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRI----EGFKAKAAVLGVIGSVVRVGGAR 212 (595)
Q Consensus 137 ~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~----~~~kaK~alLsAIgSlA~a~g~~ 212 (595)
.+.|++..| +.+|..++..|+..|+.++...+.........+++.++..|.+ +.......++.+++.+...-.
T Consensus 106 ~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-- 182 (312)
T PF03224_consen 106 PYSPFLKLL-DRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-- 182 (312)
T ss_dssp -HHHHHHH--S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH--
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch--
Confidence 567888844 7789999999999999999886655544345666666666654 333344555666666654221
Q ss_pred CcCcH--HhHHHHHHHhcc-------CCCHHHHHHHHHHHHHHH---HHhHHhHHH-HHHHHHHHHHhccCCchHHHHHH
Q 046417 213 SKGVL--DWLVPCLVEFLC-------CDDWATRKAAAEVLGKVA---VFDKDLATE-YKRSCLAALETRRFDKVKIVRET 279 (595)
Q Consensus 213 ~~~yl--~~lmp~L~e~L~-------~dDW~~RkaAaEaLgsIA---~avge~f~p-y~~~~I~~Le~crfDKVK~VRda 279 (595)
+...| ...++.|.+.+. ...-++--.++-|+=-+. .+.++.... ..+..+.++..+. |-|.||=+
T Consensus 183 ~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~--KEKvvRv~ 260 (312)
T PF03224_consen 183 YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI--KEKVVRVS 260 (312)
T ss_dssp HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc--cchHHHHH
Confidence 11111 445666666661 234555555555544331 122222121 2455666777773 77888876
Q ss_pred HHHHHHHhHhcCCC
Q 046417 280 MNRSLEMWKEVPGV 293 (595)
Q Consensus 280 ~~~aL~~~K~i~~~ 293 (595)
+ ..++.+-..
T Consensus 261 l----a~l~Nl~~~ 270 (312)
T PF03224_consen 261 L----AILRNLLSK 270 (312)
T ss_dssp H----HHHHHTTSS
T ss_pred H----HHHHHHHhc
Confidence 4 455555533
No 187
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=85.24 E-value=25 Score=40.36 Aligned_cols=161 Identities=18% Similarity=0.136 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChh
Q 046417 73 VRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVN 152 (595)
Q Consensus 73 vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~ 152 (595)
..+.....|..|.+.....=...|..++..+...- .....|..-.++|++.+..-+ +.-+.+.+. . ++.
T Consensus 341 ~~~~~~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~a-------v~~i~~~I~-~-~~~ 409 (618)
T PF01347_consen 341 VSKETLSKFSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPA-------VKFIKDLIK-S-KKL 409 (618)
T ss_dssp --TTHHHHHHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHH-------HHHHHHHHH-T-T-S
T ss_pred cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHH-------HHHHHHHHH-c-CCC
Confidence 34444555666666666555555555554333222 256678888888887765331 223334442 2 222
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc----CchhHHHHHHHHHHHHHHhhccc----------CcC---
Q 046417 153 SQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRI----EGFKAKAAVLGVIGSVVRVGGAR----------SKG--- 215 (595)
Q Consensus 153 VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~----~~~kaK~alLsAIgSlA~a~g~~----------~~~--- 215 (595)
-..-|+..|..+.-....+..++|.. +..+++. +...++.+++=++|+++.-.... ...
T Consensus 410 ~~~ea~~~l~~l~~~~~~Pt~e~l~~----l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~ 485 (618)
T PF01347_consen 410 TDDEAAQLLASLPFHVRRPTEELLKE----LFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIE 485 (618)
T ss_dssp -HHHHHHHHHHHHHT-----HHHHHH----HHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--G
T ss_pred CHHHHHHHHHHHHhhcCCCCHHHHHH----HHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHH
Confidence 22334444555555443433344443 3333332 34457777777888888633211 233
Q ss_pred -cHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417 216 -VLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAV 248 (595)
Q Consensus 216 -yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~ 248 (595)
|.+.+...|.+.....|-..+..++-+||-++.
T Consensus 486 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~ 519 (618)
T PF01347_consen 486 KYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH 519 (618)
T ss_dssp GGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC
Confidence 444444444444445666788888999888753
No 188
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.79 E-value=41 Score=39.96 Aligned_cols=144 Identities=18% Similarity=0.201 Sum_probs=94.5
Q ss_pred HhhhhcCCCCChHHHHHHHHHHHHHHHHcc----cc----chhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh--
Q 046417 60 NCLQTTDSSSKSPVRKQCVNLLTLLSRSHG----DS----LSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI-- 129 (595)
Q Consensus 60 ~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g----d~----I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l-- 129 (595)
++|.-...-.++.+|-.|..+| .+.++ |. +-.-|.+=.-.+...|.|+=|.||.-+...+..+-...
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf---~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLF---VEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHH---HHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 4555556667889999988884 45553 33 33344555568889999999999999988877666322
Q ss_pred cCCcch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417 130 TKPSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR 207 (595)
Q Consensus 130 ~~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~ 207 (595)
.=++.+ .++.-+++.|..|.-..|..+..-||-.+..+ ..-.+.|+.++|++-.+|.++.-++|.|.++.|.-|-.
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 112222 15555666663333333443444444444432 22357899999999999999999999999988876655
Q ss_pred h
Q 046417 208 V 208 (595)
Q Consensus 208 a 208 (595)
+
T Consensus 332 v 332 (1005)
T KOG1949|consen 332 V 332 (1005)
T ss_pred h
Confidence 4
No 189
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=84.33 E-value=7.3 Score=38.38 Aligned_cols=88 Identities=18% Similarity=0.382 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHh-------CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHH-HHcc
Q 046417 18 DLKQRVITCLNKLADRDTLPVATAELESIART-------LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLS-RSHG 89 (595)
Q Consensus 18 ~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~-------L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lA-Eg~g 89 (595)
++|--++.||+.= +|..+...-|-.++.. ++.+.-+-+.+||.... ..++ +.|+..|..+. -..+
T Consensus 3 eikplLIsCL~~q---~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~ 75 (174)
T PF04510_consen 3 EIKPLLISCLTMQ---ETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYG 75 (174)
T ss_pred chHHHHHHHHHhh---cccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhh
Confidence 6888999999984 3444445555444443 24444667778887643 2223 46777777777 7789
Q ss_pred ccchhhHHHHHHHHHhhccCCCh
Q 046417 90 DSLSPHLSKMISTVSCRLRDPDS 112 (595)
Q Consensus 90 d~I~PhLpkIL~~IvrrLkD~ds 112 (595)
+++.|+|..+++-+.++|.+|..
T Consensus 76 efl~~~~~~L~~~~~~~L~~p~~ 98 (174)
T PF04510_consen 76 EFLIPFMENLLPEISKVLLPPEE 98 (174)
T ss_pred hHHHHHHHHHHHHHHHHcCCchh
Confidence 99999999999999999999965
No 190
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=84.03 E-value=16 Score=41.41 Aligned_cols=234 Identities=17% Similarity=0.073 Sum_probs=136.1
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc----
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT---- 130 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~---- 130 (595)
+...+.|+..+. ..+++|-+|+-.|..+|...+ .+.-|+-++...|...+-|+++.|..-...-|-.+...++
T Consensus 255 ~~~~~~~~~~~~--~ps~~rle~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~ 331 (728)
T KOG4535|consen 255 GSDAGSAAGSTY--EPSPMRLEALQVLTLLARYFS-MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYK 331 (728)
T ss_pred hhhHHhhhcCcc--CCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcC
Confidence 566777776653 236899999999999998775 3456888899999999999999985544444444443332
Q ss_pred -CC--------cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH-hhccCchhHHHHH
Q 046417 131 -KP--------SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGK-AVRIEGFKAKAAV 198 (595)
Q Consensus 131 -~~--------~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~k-lL~~~~~kaK~al 198 (595)
+. ++- ..++|+-.++...-....|.++|-++-.+.-..-+....--+..++.|.. +=++...-++.++
T Consensus 332 P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA 411 (728)
T KOG4535|consen 332 PDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAA 411 (728)
T ss_pred CCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHH
Confidence 11 111 24455555554444567788888887776544211111111233333321 2244455566665
Q ss_pred HHHHHHHHHhhcc-cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH---h---HHH-----HHHHHHHHHH
Q 046417 199 LGVIGSVVRVGGA-RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD---L---ATE-----YKRSCLAALE 266 (595)
Q Consensus 199 LsAIgSlA~a~g~-~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge---~---f~p-----y~~~~I~~Le 266 (595)
+.+.+-.+---+. --..+.......+...+.|.....|.-|+=++|-|..++-. . +.. .+...+..-.
T Consensus 412 ~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~ 491 (728)
T KOG4535|consen 412 SRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAI 491 (728)
T ss_pred HhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 5444322210011 01233444555566666777889999999999999776521 1 222 2233334434
Q ss_pred hccCCchHHHHHHHHHHHHHhHhcCC
Q 046417 267 TRRFDKVKIVRETMNRSLEMWKEVPG 292 (595)
Q Consensus 267 ~crfDKVK~VRda~~~aL~~~K~i~~ 292 (595)
.|--||- -||+.+.+||...-|+-.
T Consensus 492 ~~~Ad~d-kV~~navraLgnllQvlq 516 (728)
T KOG4535|consen 492 EASADKD-KVKSNAVRALGNLLQFLQ 516 (728)
T ss_pred Hhhhhhh-hhhhHHHHHHhhHHHHHH
Confidence 4444544 378888888887777654
No 191
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=84.00 E-value=58 Score=38.23 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=95.4
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHhC-------C-cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc
Q 046417 21 QRVITCLNKLADRDTLPVATAELESIARTL-------T-QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL 92 (595)
Q Consensus 21 ~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L-------~-~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I 92 (595)
.-++.++..+.|-|-.+.|...|..+++.. . .+...++++.+. .+...+...++-++-.++=-+++.=
T Consensus 379 ~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~----dp~~~i~~~~lgai~NlVmefs~~k 454 (678)
T KOG1293|consen 379 ESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM----DPEIMIMGITLGAICNLVMEFSNLK 454 (678)
T ss_pred HHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh----CcchhHHHHHHHHHHHHHhhcccHH
Confidence 345566777789888888888887777653 2 334777777773 2445666665555444444444322
Q ss_pred hhhHH-HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC----CcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhc
Q 046417 93 SPHLS-KMISTVSCRLRDPDSSVRSACVAATTAMSLNITK----PSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDA 167 (595)
Q Consensus 93 ~PhLp-kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~----~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~ 167 (595)
..+|. ..+-.+..-+.|+++.+|..+.|+|-.+.-..-. +....+...++..+.+|.+..||+.+..-|..++-+
T Consensus 455 skfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 455 SKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 22222 4567888899999999999999999877743311 111125566666666889999999988888887765
Q ss_pred C
Q 046417 168 A 168 (595)
Q Consensus 168 a 168 (595)
.
T Consensus 535 ~ 535 (678)
T KOG1293|consen 535 S 535 (678)
T ss_pred c
Confidence 3
No 192
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=83.74 E-value=86 Score=37.45 Aligned_cols=239 Identities=17% Similarity=0.150 Sum_probs=115.3
Q ss_pred CCChHHHHHHHHHHHHHh------CC-cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc--ccch--hhHHHHH
Q 046417 32 DRDTLPVATAELESIART------LT-QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG--DSLS--PHLSKMI 100 (595)
Q Consensus 32 DrDT~r~A~~~LD~lA~~------L~-~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g--d~I~--PhLpkIL 100 (595)
|.+.+.+++..|-.|+.. +. .+.+|.++.+|... ++..+..+.+.++-.+|-... +.|. .-|+.+|
T Consensus 383 d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~---~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~ 459 (708)
T PF05804_consen 383 DPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN---SEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLM 459 (708)
T ss_pred CCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC---CCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHH
Confidence 444555666666666542 22 23477777777663 334445555555444433221 2221 1133333
Q ss_pred HHHHhhccCCChh----HHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH
Q 046417 101 STVSCRLRDPDSS----VRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL 176 (595)
Q Consensus 101 ~~IvrrLkD~ds~----VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L 176 (595)
... ++-.|+. ||.++-+. |. .+..+..|+.||+..+....+.....-...+|+.+--. +..-..++
T Consensus 460 ~ra---~~~~D~lLlKlIRNiS~h~-~~-----~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~-~ld~~~ll 529 (708)
T PF05804_consen 460 KRA---LKTRDPLLLKLIRNISQHD-GP-----LKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIP-DLDWAQLL 529 (708)
T ss_pred HHH---HhcccHHHHHHHHHHHhcC-ch-----HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC-CcCHHHHH
Confidence 322 3333433 24333221 00 00123348889998874333333333333334443211 11224566
Q ss_pred H--HHHHHHHHhhccCch--hHHHHHHHHHHHHHHhhcc----cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417 177 R--KLLPRLGKAVRIEGF--KAKAAVLGVIGSVVRVGGA----RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAV 248 (595)
Q Consensus 177 ~--~Ll~rL~klL~~~~~--kaK~alLsAIgSlA~a~g~----~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~ 248 (595)
. .++|-|.+.|..... .+-..++-.+|+++.--.. ...+..+.++..|..+-.|++. .+.++..+-.
T Consensus 530 ~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~-----VlQil~~f~~ 604 (708)
T PF05804_consen 530 QEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEI-----VLQILYVFYQ 604 (708)
T ss_pred HhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHH-----HHHHHHHHHH
Confidence 5 488888888864422 2333334556666631111 1123333344444333333333 3444444443
Q ss_pred Hh--HH---hHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417 249 FD--KD---LATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKE 289 (595)
Q Consensus 249 av--ge---~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~ 289 (595)
.+ ++ .+. ....+...|-....||-+.||.....+|...-+
T Consensus 605 ll~h~~tr~~ll-~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 605 LLFHEETREVLL-KETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred HHcChHHHHHHH-hccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33 22 222 124466677777789999999999999977554
No 193
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=83.61 E-value=33 Score=40.11 Aligned_cols=147 Identities=12% Similarity=0.170 Sum_probs=102.7
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHhhhhh--cCCcch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHH
Q 046417 100 ISTVSCRLRDPDSSVRSACVAATTAMSLNI--TKPSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQ 175 (595)
Q Consensus 100 L~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l--~~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~ 175 (595)
.-+....++ |..++.|+|..+-.+++-+ .+.++. ....||+..| .+++-.|+..+-.||..+|-.-.+.--.+
T Consensus 381 ~l~~~~~~k--d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~NlVmefs~~kskf 457 (678)
T KOG1293|consen 381 HLMCLPPIK--DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSNLKSKF 457 (678)
T ss_pred HHccccccc--cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHHHHhhcccHHHHH
Confidence 333334444 4558888888887777543 122222 2778999999 68888999999999999886644433334
Q ss_pred HHH-HHHHHHHhhccCchhHHHHHHHHHHHHHHhhc--ccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 046417 176 LRK-LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG--ARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF 249 (595)
Q Consensus 176 L~~-Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g--~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a 249 (595)
+.. .+..+.+++.++.+..|.-.+-++.-+..-.. ..+.+|-+.-+..|..+.+|+||.+...++..|--+...
T Consensus 458 l~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 458 LRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 443 66788888888888888777777776665332 225666677788888999999999988888777666543
No 194
>PF05536 Neurochondrin: Neurochondrin
Probab=83.12 E-value=96 Score=35.80 Aligned_cols=194 Identities=15% Similarity=0.090 Sum_probs=122.6
Q ss_pred HHHHhhhhcCCCCC-hHHHHHHHHHHHHHHHHcc-ccc--hhhHHHHHHHHHhhccCCCh-hHHHHHHHHHHHhhhhhcC
Q 046417 57 SFLNCLQTTDSSSK-SPVRKQCVNLLTLLSRSHG-DSL--SPHLSKMISTVSCRLRDPDS-SVRSACVAATTAMSLNITK 131 (595)
Q Consensus 57 ~fL~~L~d~~ss~k-p~vRKaaI~lLG~lAEg~g-d~I--~PhLpkIL~~IvrrLkD~ds-~VR~Ac~~aLg~LA~~l~~ 131 (595)
.||..|..+...+. .......-+++.+++..|. +.+ .|.+-.-||.++..+...+. .+-.=|..+|..++.+=.-
T Consensus 53 ~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G 132 (543)
T PF05536_consen 53 KFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEG 132 (543)
T ss_pred hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHh
Confidence 57777766544332 2445555566666777775 223 57788889999999887776 6666677777777732110
Q ss_pred -Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHhhccCchhHHHHHHHHHHH
Q 046417 132 -PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPN----PEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGS 204 (595)
Q Consensus 132 -~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d----~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgS 204 (595)
..+. .-+..|++++.+ ......-|...|..++-.... .....+..+++.|...+....-..|-.++..++.
T Consensus 133 ~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~ 210 (543)
T PF05536_consen 133 AKALLESGAVPALCEIIPN--QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSA 210 (543)
T ss_pred HHHHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 1111 267889999843 334455555556665554321 1123556777888888866655566677888887
Q ss_pred HHHhhc------ccCcCcHHhHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhHH
Q 046417 205 VVRVGG------ARSKGVLDWLVPCLVEFLCC-DDWATRKAAAEVLGKVAVFDKD 252 (595)
Q Consensus 205 lA~a~g------~~~~~yl~~lmp~L~e~L~~-dDW~~RkaAaEaLgsIA~avge 252 (595)
+..... .........+...|...|.+ -.-..|.+|+...+.+..+.|.
T Consensus 211 ~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 211 FLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred hcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Confidence 776432 11234556677777777765 3456799999999999998873
No 195
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.85 E-value=19 Score=42.56 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHh--HHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417 230 CDDWATRKAAAEVLGKVAVFD--KDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 230 ~dDW~~RkaAaEaLgsIA~av--ge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~ 291 (595)
+|---....=+|+|..+|... .+.+.+|...+..+ -+..||.+ ++||.-|....
T Consensus 326 nDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-------D~~fvrka-Iraig~~aik~ 381 (734)
T KOG1061|consen 326 NDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-------DVDFVRKA-VRAIGRLAIKA 381 (734)
T ss_pred CCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-------CHHHHHHH-HHHhhhhhhhh
Confidence 344566777788887777643 35566655543322 24566665 44554444433
No 196
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=82.81 E-value=65 Score=33.61 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=67.0
Q ss_pred ccccchhhHHHHHHHHHhhc----cCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHH
Q 046417 88 HGDSLSPHLSKMISTVSCRL----RDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAA 163 (595)
Q Consensus 88 ~gd~I~PhLpkIL~~IvrrL----kD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaa 163 (595)
+.+.+.|+|-++|...+.+. .|.+.... .+++-.||+.-.. .-+.||+..+..+.+ .+ ..-
T Consensus 28 ~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~---~~a~~LLaq~re~----~A~~~li~l~~~~~~-~~-------~~l 92 (249)
T PF06685_consen 28 QREEITPELLKILEDAIERANELLDDEEYNLH---FYALYLLAQFREE----RALPPLIRLFSQDDD-FL-------EDL 92 (249)
T ss_pred CHHHhhHHHHHHHHHHHHhHHHhccCcchHHH---HHHHHHHHHHhhh----hhHHHHHHHHcCCcc-hH-------HHH
Confidence 88999999999998877543 22333222 3444444443211 246777777732222 10 011
Q ss_pred HHhcCCCchHHHHHHHH----HHHHHhhccCch--hHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCC
Q 046417 164 AIDAAPNPEVEQLRKLL----PRLGKAVRIEGF--KAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCD 231 (595)
Q Consensus 164 viE~a~d~~~~~L~~Ll----~rL~klL~~~~~--kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~d 231 (595)
+.+...+....++..++ ..|.++++++.. -+|.++++++..++..+...-......+...+..++..+
T Consensus 93 ~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~ 166 (249)
T PF06685_consen 93 FGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERN 166 (249)
T ss_pred HcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccC
Confidence 11111111222333332 345556666633 389999999999998776653343444444444445433
No 197
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=82.62 E-value=9.1 Score=45.38 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=95.5
Q ss_pred hccCCChhHHHHHHHHHHHhhhhhcCCcch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH-HHHHH
Q 046417 106 RLRDPDSSVRSACVAATTAMSLNITKPSFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL-RKLLP 181 (595)
Q Consensus 106 rLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L-~~Ll~ 181 (595)
.++..+..+| +|...|..||+...-..-+ -++.+|+..| ...+..+...+..+|.++.-.-.. -..+. ..+++
T Consensus 258 l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~L-dr~n~ellil~v~fLkkLSi~~EN-K~~m~~~giV~ 334 (708)
T PF05804_consen 258 LIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCL-DRENEELLILAVTFLKKLSIFKEN-KDEMAESGIVE 334 (708)
T ss_pred HHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHH-HHHHHHcCCHH
Confidence 3444455556 6677788888765211011 2888999888 566777888777777776422100 01122 24889
Q ss_pred HHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH--HhHHHH-
Q 046417 182 RLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK--DLATEY- 257 (595)
Q Consensus 182 rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg--e~f~py- 257 (595)
+|.++|.+++..+...++.++..+..-...- ...+ ..++|.|.++|.++++. ..++-.|+.|..... ..|. |
T Consensus 335 kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R-~~mV~~GlIPkLv~LL~d~~~~--~val~iLy~LS~dd~~r~~f~-~T 410 (708)
T PF05804_consen 335 KLLKLLPSENEDLVNVALRLLFNLSFDPELR-SQMVSLGLIPKLVELLKDPNFR--EVALKILYNLSMDDEARSMFA-YT 410 (708)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCcCHHHH-HHHHHCCCcHHHHHHhCCCchH--HHHHHHHHHhccCHhhHHHHh-hc
Confidence 9999999888777777777777666422211 0111 23678888898877644 456777777765331 2232 3
Q ss_pred --HHHHHHHHHhccCCch
Q 046417 258 --KRSCLAALETRRFDKV 273 (595)
Q Consensus 258 --~~~~I~~Le~crfDKV 273 (595)
.+.++..|.++-...+
T Consensus 411 dcIp~L~~~Ll~~~~~~v 428 (708)
T PF05804_consen 411 DCIPQLMQMLLENSEEEV 428 (708)
T ss_pred chHHHHHHHHHhCCCccc
Confidence 2444555555544444
No 198
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=82.52 E-value=39 Score=37.42 Aligned_cols=200 Identities=16% Similarity=0.072 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHH--HHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC---Ccch-hccHHHHHH
Q 046417 71 SPVRKQCVNLLT--LLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK---PSFS-VLSKPLIEL 144 (595)
Q Consensus 71 p~vRKaaI~lLG--~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~---~~~~-~~l~PLi~a 144 (595)
.-.|.+++.-+. ..++-.+++|.+.--.+...+.+-++-|.+.=..++.-.+|.++-.+.- ..+. .-..|....
T Consensus 74 AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~~~~~l 153 (427)
T KOG2842|consen 74 AKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLGPFLAL 153 (427)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccchHHHH
Confidence 467777776544 4456678999999889999999999999876544444444555443321 1111 244555555
Q ss_pred HhhcCChhHHH--HHHHHHHHHHhc-CCCchHHHHHHHH-----HHHHHhhccCchh---HH--HHHHHHHHHHHH--h-
Q 046417 145 ILVEQDVNSQV--GGAMCLAAAIDA-APNPEVEQLRKLL-----PRLGKAVRIEGFK---AK--AAVLGVIGSVVR--V- 208 (595)
Q Consensus 145 Ll~d~nk~VQ~--~AA~cLaaviE~-a~d~~~~~L~~Ll-----~rL~klL~~~~~k---aK--~alLsAIgSlA~--a- 208 (595)
++.++++.++. .+|.||+..+=. +.+...-+.-.+| .+.. +.+....- +. ..++.++.+-+- .
T Consensus 154 i~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~a~~Lti 232 (427)
T KOG2842|consen 154 ILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVY-LEDDETVVVCACQNLGLLLTCLTAWSLLLTI 232 (427)
T ss_pred HhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh-cccCCCccccccchhHHHHHHHHHHHHHHHc
Confidence 65677777764 444555554433 2333322222223 3333 44333211 11 111122221111 0
Q ss_pred hcc-cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH----HhHHHHHHHHHHHHHhccCC
Q 046417 209 GGA-RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK----DLATEYKRSCLAALETRRFD 271 (595)
Q Consensus 209 ~g~-~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg----e~f~py~~~~I~~Le~crfD 271 (595)
..+ ........+.|.|..+|..+.-..|.+|.|++..++.... +++-|-++.++..|+....|
T Consensus 233 ~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~latd 300 (427)
T KOG2842|consen 233 CPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLATD 300 (427)
T ss_pred CccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHh
Confidence 000 1112223366888889999999999999999999887662 35555566666666655444
No 199
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=82.27 E-value=83 Score=34.48 Aligned_cols=95 Identities=12% Similarity=0.162 Sum_probs=74.4
Q ss_pred ChHHHHHHHHHHHHHhCC-cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccchhhH----HHHHHHHHhhc
Q 046417 34 DTLPVATAELESIARTLT-QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSLSPHL----SKMISTVSCRL 107 (595)
Q Consensus 34 DT~r~A~~~LD~lA~~L~-~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I~PhL----pkIL~~IvrrL 107 (595)
++.-.-+..|+++-+... ...+|.+++-|+--.-.++..++--+++-+|.+.|-|- +.+..-+ ..|++.|+..+
T Consensus 58 ekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI 137 (524)
T KOG4413|consen 58 EKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI 137 (524)
T ss_pred chhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH
Confidence 355567888988887654 45588888888877777778899999999999999997 3333222 36788888888
Q ss_pred cCCChhHHHHHHHHHHHhhhh
Q 046417 108 RDPDSSVRSACVAATTAMSLN 128 (595)
Q Consensus 108 kD~ds~VR~Ac~~aLg~LA~~ 128 (595)
-..|-.|-.|+.+++.+++..
T Consensus 138 ggeddeVAkAAiesikrialf 158 (524)
T KOG4413|consen 138 GGEDDEVAKAAIESIKRIALF 158 (524)
T ss_pred cCCcHHHHHHHHHHHHHHHhc
Confidence 889999999999999999853
No 200
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=82.25 E-value=4.9 Score=46.90 Aligned_cols=197 Identities=13% Similarity=0.173 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh--hHHHHHHHHHhhccCCC
Q 046417 35 TLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP--HLSKMISTVSCRLRDPD 111 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P--hLpkIL~~IvrrLkD~d 111 (595)
-.+-.+.-|=.+++.++.+. -..|+++|...+..++-.+|=--+.-+.... +.+.+ ...+|+|.+..+++|.+
T Consensus 307 a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i----~~Lt~~~~~d~I~phv~~G~~DTn 382 (690)
T KOG1243|consen 307 AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI----DHLTKQILNDQIFPHVALGFLDTN 382 (690)
T ss_pred cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHh----hhcCHHhhcchhHHHHHhhcccCC
Confidence 45556666667777777444 3356666666666666666644433333333 33322 34589999999999999
Q ss_pred hhHHHHHHHHHHHhhhhhcCCcchh-ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH--HHHHHHHHhhc
Q 046417 112 SSVRSACVAATTAMSLNITKPSFSV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR--KLLPRLGKAVR 188 (595)
Q Consensus 112 s~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~--~Ll~rL~klL~ 188 (595)
+.+|..++.++..|+..+....+.. +++ .+.-+..|.....-.---.||-+.-.. +.+... -|..++.+.++
T Consensus 383 ~~Lre~Tlksm~~La~kL~~~~Ln~Ellr-~~ar~q~d~~~~irtntticlgki~~~----l~~~~R~~vL~~aftralk 457 (690)
T KOG1243|consen 383 ATLREQTLKSMAVLAPKLSKRNLNGELLR-YLARLQPDEHGGIRTNTTICLGKIAPH----LAASVRKRVLASAFTRALK 457 (690)
T ss_pred HHHHHHHHHHHHHHHhhhchhhhcHHHHH-HHHhhCccccCcccccceeeecccccc----cchhhhccccchhhhhhhc
Confidence 9999999999999998775321111 111 111111121111111112222222111 011112 25677788888
Q ss_pred cCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHH
Q 046417 189 IEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEV 242 (595)
Q Consensus 189 ~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEa 242 (595)
++...+|.+.+-++.+.-.--. .......++|.|.....+++=.+|-.|..+
T Consensus 458 dpf~paR~a~v~~l~at~~~~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~ 509 (690)
T KOG1243|consen 458 DPFVPARKAGVLALAATQEYFD--QSEVANKILPSLVPLTVDPEKTVRDTAEKA 509 (690)
T ss_pred CCCCCchhhhhHHHhhcccccc--hhhhhhhccccccccccCcccchhhHHHHH
Confidence 8888887765544443221100 012224577777777777776666655443
No 201
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.13 E-value=7.6 Score=47.79 Aligned_cols=142 Identities=16% Similarity=0.119 Sum_probs=95.4
Q ss_pred ccHHHHHHHhh----cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhc-cCchhHHHHHHHHHHHHHHhhcc
Q 046417 137 LSKPLIELILV----EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVR-IEGFKAKAAVLGVIGSVVRVGGA 211 (595)
Q Consensus 137 ~l~PLi~aLl~----d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~-~~~~kaK~alLsAIgSlA~a~g~ 211 (595)
-|.|++..+.. -+++..|.+|-+||.++.--. ..+-..=+|-|+..++ +++..+|..++-++|-+|.
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS----a~fces~l~llftimeksp~p~IRsN~VvalgDlav---- 990 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS----AEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAV---- 990 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhcCCCceeeecchheccchhh----
Confidence 46666666542 357889999999999987432 2355556677777776 6787888777777776663
Q ss_pred cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417 212 RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 212 ~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~ 291 (595)
.|+-+++.--+.|-..|.|++-.+|+.|..+|..+-..-.--...|....-..|+ |-..-||+.+- +-.|++.
T Consensus 991 ~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~----D~~~~IsdlAk---~FF~Els 1063 (1251)
T KOG0414|consen 991 RFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLE----DPNAEISDLAK---SFFKELS 1063 (1251)
T ss_pred hcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhc----CCcHHHHHHHH---HHHHHhh
Confidence 3666667677788888899999999999999999966543222222222222344 77777777643 4455555
Q ss_pred CC
Q 046417 292 GV 293 (595)
Q Consensus 292 ~~ 293 (595)
..
T Consensus 1064 ~k 1065 (1251)
T KOG0414|consen 1064 SK 1065 (1251)
T ss_pred hc
Confidence 33
No 202
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=82.10 E-value=95 Score=40.85 Aligned_cols=206 Identities=13% Similarity=0.127 Sum_probs=120.2
Q ss_pred HHHHH---HHhCCcCcHHHHHHhhhhcCCCC---ChHHHHHHHHHHHHHHHHccccchhhHHHHHH----HHHhhccCCC
Q 046417 42 ELESI---ARTLTQDSFSSFLNCLQTTDSSS---KSPVRKQCVNLLTLLSRSHGDSLSPHLSKMIS----TVSCRLRDPD 111 (595)
Q Consensus 42 ~LD~l---A~~L~~~~lp~fL~~L~d~~ss~---kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~----~IvrrLkD~d 111 (595)
.+|.+ ...|+.+.|..|+.+|.+-.... ...-|-.++..|..++..-.+-+.-.+.+|+. ++++.-.+++
T Consensus 1071 ~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n 1150 (1780)
T PLN03076 1071 EMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSEN 1150 (1780)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcc
Confidence 44554 33577888999999987642111 12347888888888888888777555556444 4455445667
Q ss_pred hhHHHHHHHHHHHhhhhhcCCc------ch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Q 046417 112 SSVRSACVAATTAMSLNITKPS------FS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLG 184 (595)
Q Consensus 112 s~VR~Ac~~aLg~LA~~l~~~~------~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~ 184 (595)
..|+--|++.|.+++..+.+.. +. .||+|+...|-...+..++....-|+..+++.-..-+..--..+..-|.
T Consensus 1151 ~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs 1230 (1780)
T PLN03076 1151 LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFT 1230 (1780)
T ss_pred hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 7799999999999997665422 22 3999999888666677889999999999888733222111122333333
Q ss_pred HhhccCchhHHHHHHHHHHHHHHhh-c-cc--CcCcHHhHHHHHHHhccCC-CHHHHHHHHHHHHHHH
Q 046417 185 KAVRIEGFKAKAAVLGVIGSVVRVG-G-AR--SKGVLDWLVPCLVEFLCCD-DWATRKAAAEVLGKVA 247 (595)
Q Consensus 185 klL~~~~~kaK~alLsAIgSlA~a~-g-~~--~~~yl~~lmp~L~e~L~~d-DW~~RkaAaEaLgsIA 247 (595)
.....++-.+-..+.+.+.-|..-. . .. -...|..++.+|.+|.... +-..=..|++.|-.++
T Consensus 1231 ~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~ 1298 (1780)
T PLN03076 1231 TAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCA 1298 (1780)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHH
Confidence 2333333222233344444333210 1 00 0245667777777776532 2222234455555443
No 203
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.60 E-value=69 Score=38.67 Aligned_cols=225 Identities=14% Similarity=0.165 Sum_probs=116.2
Q ss_pred hHHHHHHHHHHHHH--------hCCcCcHH----HHHHhhhhcCCC----CChHHHHHHHHHHHHHHHHc---cccchhh
Q 046417 35 TLPVATAELESIAR--------TLTQDSFS----SFLNCLQTTDSS----SKSPVRKQCVNLLTLLSRSH---GDSLSPH 95 (595)
Q Consensus 35 T~r~A~~~LD~lA~--------~L~~~~lp----~fL~~L~d~~ss----~kp~vRKaaI~lLG~lAEg~---gd~I~Ph 95 (595)
-+..|+-+++.+-. .+.++.++ .+|..|..+.+. .+.+.=|+-+|.++++-+.. +..+.++
T Consensus 514 vhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~ 593 (960)
T KOG1992|consen 514 VHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQ 593 (960)
T ss_pred HHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHH
Confidence 56678888887543 23344444 344444444333 34455666666666655544 3444455
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc------chhccHHHHHHHhhcCChhHHHHH---HHHHHHHHh
Q 046417 96 LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS------FSVLSKPLIELILVEQDVNSQVGG---AMCLAAAID 166 (595)
Q Consensus 96 LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~------~~~~l~PLi~aLl~d~nk~VQ~~A---A~cLaaviE 166 (595)
|.+|+..+.|--. +|..-.=.-+++|.+-...++.. +..-+-|+++.++.+ .+|+-- ..-|+-++|
T Consensus 594 Lteiv~~v~KNPs--~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~e---DI~EfiPYvfQlla~lve 668 (960)
T KOG1992|consen 594 LTEIVEEVSKNPS--NPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSE---DIQEFIPYVFQLLAVLVE 668 (960)
T ss_pred HHHHHHHHhcCCC--CchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5555555544443 34445556667777777766532 122455666776642 233322 233566777
Q ss_pred cCCCch----HHHHHHHH-HHHHHhhccCchhHHHHHHHHHHHHHHhhcccCc--CcHHhHHHHHHHhccC--CCHHHHH
Q 046417 167 AAPNPE----VEQLRKLL-PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSK--GVLDWLVPCLVEFLCC--DDWATRK 237 (595)
Q Consensus 167 ~a~d~~----~~~L~~Ll-~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~--~yl~~lmp~L~e~L~~--dDW~~Rk 237 (595)
.....+ .+.++.|+ |++-+.- .+. ++++..+.++...|...+. ..+..++..++..+.+ .|..
T Consensus 669 ~~~~~ip~~~~~l~~~lLsp~lW~r~--gNi---palvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~--- 740 (960)
T KOG1992|consen 669 HSSGTIPDSYSPLFPPLLSPNLWKRS--GNI---PALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHH--- 740 (960)
T ss_pred hcCCCCchhHHHHHHHhcCHHHHhhc--CCc---HHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchh---
Confidence 743222 22333322 3322211 122 5777778877776644333 4455566666666653 3433
Q ss_pred HHHHHHHHHHHHhH-HhHHHHHHHHHH-HHHhccCCch
Q 046417 238 AAAEVLGKVAVFDK-DLATEYKRSCLA-ALETRRFDKV 273 (595)
Q Consensus 238 aAaEaLgsIA~avg-e~f~py~~~~I~-~Le~crfDKV 273 (595)
+...|..|-.... ..+.||+..+.- .|++-+.-|.
T Consensus 741 -GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT 777 (960)
T KOG1992|consen 741 -GFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKT 777 (960)
T ss_pred -HHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCc
Confidence 6777777776663 456667654422 2444444443
No 204
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=81.21 E-value=30 Score=36.17 Aligned_cols=138 Identities=17% Similarity=0.070 Sum_probs=90.7
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc-----hhhHH-HHHHHHHhhcc--------CCChhHHHHHHH
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL-----SPHLS-KMISTVSCRLR--------DPDSSVRSACVA 120 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I-----~PhLp-kIL~~IvrrLk--------D~ds~VR~Ac~~ 120 (595)
++.+++.+.....+..+.+|..++.+|..+.+-++... ..-|. -+-..+...|- |....+-.++.-
T Consensus 117 ~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~ 196 (282)
T PF10521_consen 117 WPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYP 196 (282)
T ss_pred hhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH
Confidence 55666666555555578999999999999999776433 22222 23334444554 455567888888
Q ss_pred HHHHhhhhhcCCcc---h-hccHHHHHHHhh----cCC---hhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc
Q 046417 121 ATTAMSLNITKPSF---S-VLSKPLIELILV----EQD---VNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRI 189 (595)
Q Consensus 121 aLg~LA~~l~~~~~---~-~~l~PLi~aLl~----d~n---k~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~ 189 (595)
|+-.++.-...... . .+.+-|-+.+++ ..+ +.+....+-.|..++...+...+.||++|.+-|...+.+
T Consensus 197 ~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 197 ALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred HHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 88888764422111 1 133334443433 333 556666666688899988888889999999999999987
Q ss_pred Cch
Q 046417 190 EGF 192 (595)
Q Consensus 190 ~~~ 192 (595)
+.+
T Consensus 277 pf~ 279 (282)
T PF10521_consen 277 PFG 279 (282)
T ss_pred CCc
Confidence 754
No 205
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=80.96 E-value=38 Score=34.93 Aligned_cols=164 Identities=15% Similarity=0.142 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHHHHcc-------ccc-hhhHHHHHHHHHhhccCC-ChhHHHHHHHHHHHhhhhhcC--Cc-ch---
Q 046417 71 SPVRKQCVNLLTLLSRSHG-------DSL-SPHLSKMISTVSCRLRDP-DSSVRSACVAATTAMSLNITK--PS-FS--- 135 (595)
Q Consensus 71 p~vRKaaI~lLG~lAEg~g-------d~I-~PhLpkIL~~IvrrLkD~-ds~VR~Ac~~aLg~LA~~l~~--~~-~~--- 135 (595)
|..=|++-.+|+.+++.++ ..+ ..++.+|..+++..|..- .-.+=+++..++.++++.+.. .+ +.
T Consensus 61 Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP 140 (255)
T PF10350_consen 61 WRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELP 140 (255)
T ss_pred HHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhH
Confidence 7778899999999997652 222 557888877777776554 345667777888888888763 11 11
Q ss_pred -hccHHHHHHHhhc-CCh-hH---HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCch--------hHHHHHHHH
Q 046417 136 -VLSKPLIELILVE-QDV-NS---QVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGF--------KAKAAVLGV 201 (595)
Q Consensus 136 -~~l~PLi~aLl~d-~nk-~V---Q~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~--------kaK~alLsA 201 (595)
..+.-+++.+.++ +.. .+ -+|--+++.+++-+.+....+.++..+.+|+.+.+.+.. ..+..++.+
T Consensus 141 ~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNi 220 (255)
T PF10350_consen 141 EEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNI 220 (255)
T ss_pred HHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHH
Confidence 1556666666333 111 12 134455567777665433237888899999988876543 256677889
Q ss_pred HHHHHHhh--cccCcCcHHhHHHHHHHhccCCCHH
Q 046417 202 IGSVVRVG--GARSKGVLDWLVPCLVEFLCCDDWA 234 (595)
Q Consensus 202 IgSlA~a~--g~~~~~yl~~lmp~L~e~L~~dDW~ 234 (595)
+..|+.-+ +....+|+...+-.-.+.+.+++|.
T Consensus 221 Lr~if~ds~L~~~~~~yi~~~l~lai~~f~s~~Wa 255 (255)
T PF10350_consen 221 LRAIFRDSKLSEDVSPYIEDALILAIKGFSSPDWA 255 (255)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 99988744 3335688888887777888888884
No 206
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=80.85 E-value=32 Score=35.87 Aligned_cols=116 Identities=18% Similarity=0.279 Sum_probs=76.5
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHH
Q 046417 19 LKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSK 98 (595)
Q Consensus 19 lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpk 98 (595)
+-++.....+++.+.+..-.=+-.+-.||+-=....+++++..+.... + .+-..+||.+...|+.
T Consensus 39 ~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re~~A~~~li~l~~~~~---~------------~~~~l~GD~~tE~l~~ 103 (249)
T PF06685_consen 39 ILEDAIERANELLDDEEYNLHFYALYLLAQFREERALPPLIRLFSQDD---D------------FLEDLFGDFITEDLPR 103 (249)
T ss_pred HHHHHHHhHHHhccCcchHHHHHHHHHHHHHhhhhhHHHHHHHHcCCc---c------------hHHHHHcchhHhHHHH
Confidence 334444445566555555444566666666545556888888885421 1 3556678888888888
Q ss_pred HHHHHH--------hhccCCCh--hHHHHHHHHHHHhhhhhcCC--cchhccHHHHHHHhhcC
Q 046417 99 MISTVS--------CRLRDPDS--SVRSACVAATTAMSLNITKP--SFSVLSKPLIELILVEQ 149 (595)
Q Consensus 99 IL~~Iv--------rrLkD~ds--~VR~Ac~~aLg~LA~~l~~~--~~~~~l~PLi~aLl~d~ 149 (595)
|+..+. +.+.|++. -||.||+.||+.++..-... ..+.++..++...+..+
T Consensus 104 ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~ 166 (249)
T PF06685_consen 104 ILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERN 166 (249)
T ss_pred HHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccC
Confidence 888764 45777765 48999999999999765332 22348888888854433
No 207
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=80.78 E-value=2e+02 Score=38.00 Aligned_cols=266 Identities=9% Similarity=0.082 Sum_probs=150.1
Q ss_pred HHHHhhhcC-CCChHHHHHHHHH---HHHHhC-C-cC---------cHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHH
Q 046417 23 VITCLNKLA-DRDTLPVATAELE---SIARTL-T-QD---------SFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRS 87 (595)
Q Consensus 23 vl~~L~KL~-DrDT~r~A~~~LD---~lA~~L-~-~~---------~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg 87 (595)
+-..+++.+ .++ ..+|+-++| +++..+ . .+ -|.+|.-.+.. +....+|+-.+..+..+...
T Consensus 1138 l~~hf~~vg~~~n-~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~---s~~~eVrE~ILeCv~qmI~s 1213 (1780)
T PLN03076 1138 LSDFFVTIGCSEN-LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRK---SNAVEIRELIIRCVSQMVLS 1213 (1780)
T ss_pred HHHHHHHhcCCcc-hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHH
Confidence 444567764 444 346666666 555543 2 12 25555555542 34579999999999999999
Q ss_pred ccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC-Ccc--hhccHHHHHHHhh--cC--ChhHHHHHHHH
Q 046417 88 HGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK-PSF--SVLSKPLIELILV--EQ--DVNSQVGGAMC 160 (595)
Q Consensus 88 ~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~-~~~--~~~l~PLi~aLl~--d~--nk~VQ~~AA~c 160 (595)
+++.|..=+..|+..+.....|.+..+=..+-.++..+...... -+. ...+.-++..|.. .+ +.++-..|..-
T Consensus 1214 ~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~l 1293 (1780)
T PLN03076 1214 RVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAF 1293 (1780)
T ss_pred HHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHH
Confidence 99999888889999888888888877666777777766644221 011 1234556666531 11 12222222221
Q ss_pred HH----HHHhc---------------------------C----C-CchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHH
Q 046417 161 LA----AAIDA---------------------------A----P-NPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGS 204 (595)
Q Consensus 161 La----aviE~---------------------------a----~-d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgS 204 (595)
|. .+.+. . . +....+--.|+..|.++..++...+|..+|..+--
T Consensus 1294 L~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~ 1373 (1780)
T PLN03076 1294 LRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFD 1373 (1780)
T ss_pred HHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 22 11111 0 0 00113445688888888888888899888877766
Q ss_pred HHHhhcccCcC-----cHHhHHHHHHHhcc------------------------CCCHHHHHHHHHHHHHHHHHhH---H
Q 046417 205 VVRVGGARSKG-----VLDWLVPCLVEFLC------------------------CDDWATRKAAAEVLGKVAVFDK---D 252 (595)
Q Consensus 205 lA~a~g~~~~~-----yl~~lmp~L~e~L~------------------------~dDW~~RkaAaEaLgsIA~avg---e 252 (595)
+..+-|..|.+ .+..++-+|.+.+. .+.|. .-....+|..|..... +
T Consensus 1374 iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl-~eT~~~AL~~lvdLft~fFd 1452 (1780)
T PLN03076 1374 TLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL-YETCTLALQLVVDLFVKFYP 1452 (1780)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH-HHHHHHHHHHHHHHHHHHHH
Confidence 66666666654 23444444443331 12353 3344445555544443 3
Q ss_pred hHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417 253 LATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 253 ~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~ 293 (595)
.+.++.+.++..|..|-.---..+=.+...+|+.+-.-.|.
T Consensus 1453 ~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1453 TVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 34445677788888884443333333345555554444433
No 208
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=80.09 E-value=33 Score=45.87 Aligned_cols=218 Identities=13% Similarity=0.112 Sum_probs=121.3
Q ss_pred CCChHHHHHHHHHHHHHhCC---cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhcc
Q 046417 32 DRDTLPVATAELESIARTLT---QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLR 108 (595)
Q Consensus 32 DrDT~r~A~~~LD~lA~~L~---~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLk 108 (595)
|-++..+|...+-.++--.. ++.+..-..++.+-...-.-..|-+++..+..++...+.+..|+++.++..+...+.
T Consensus 106 ~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~ 185 (2341)
T KOG0891|consen 106 DVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALR 185 (2341)
T ss_pred ChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhcc
Confidence 55677777777766555322 333444444444433222235677899999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh--------cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 046417 109 DPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV--------EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLL 180 (595)
Q Consensus 109 D~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~--------d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll 180 (595)
|+++.+|..||.++......+.+.. .....+-+.-.+. +..+ --++......++..... ........+
T Consensus 186 ~~~~~i~~~a~~al~~~~~~~~~~~-~~~~~~~~~rcvd~~~~~l~~~~~~--~~~~~~~~~e~~~~~~~-~~~~~~~~~ 261 (2341)
T KOG0891|consen 186 DPKPAIRLQACSALHAVLSSLAQRE-AKLKPQWYQRCVDEARHGLSSDGVK--IHASLLVYNELLRISDP-FLEKYDSTC 261 (2341)
T ss_pred CCChhhhHHHHHHHHHHHhhhhhcc-chhhhHHHHHHHHhccccccchHHH--hhhHHHHHHHHHHHHHH-HHHhhHHHH
Confidence 9999999999999988776654322 1111111111111 1111 00111112222211111 111122223
Q ss_pred --HHHHHhhccCchhHHHHHHHHHHHHHH--hhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHH
Q 046417 181 --PRLGKAVRIEGFKAKAAVLGVIGSVVR--VGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATE 256 (595)
Q Consensus 181 --~rL~klL~~~~~kaK~alLsAIgSlA~--a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~p 256 (595)
..+.+.+++.... ..+.--++-+|. .++-. ..|+...|..+...+...+ -.|...|+.||.+++..+.+
T Consensus 262 ~~~~~~~~lk~~~i~--~~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~l~~~~~~~----~~~~~~i~~ia~al~~~~~~ 334 (2341)
T KOG0891|consen 262 VRQAKGKLLKSIVIR--MTLSQILPLLAAFNPAKFQ-VKYLHTEMDHLLSILRKEK----TRAFVSIGEIAVALGSSMSP 334 (2341)
T ss_pred HHHHHHHHhccccHH--HHHHhccHHHhhhhhhhhH-HHHHHHHHHHHHHhhhccc----hhHHHHHHHHHHHhhhhhhh
Confidence 2233334333322 111111122222 22211 2566666666666665333 77999999999999988887
Q ss_pred HHHH
Q 046417 257 YKRS 260 (595)
Q Consensus 257 y~~~ 260 (595)
|...
T Consensus 335 ~~~~ 338 (2341)
T KOG0891|consen 335 YLSN 338 (2341)
T ss_pred hhcc
Confidence 7644
No 209
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=79.85 E-value=18 Score=41.92 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh---cccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Q 046417 176 LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG---GARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD 252 (595)
Q Consensus 176 L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~---g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge 252 (595)
+.+++..++.+-+++...- -++..+..++..- ...+..+++.++-.+...+.+.|-.+|+..+..|..|...+|+
T Consensus 47 flr~vn~IL~~Kk~~si~d--Ril~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e 124 (885)
T COG5218 47 FLRVVNTILACKKNPSIPD--RILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE 124 (885)
T ss_pred HHHHHHHhhccccCCCcHH--HHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch
Confidence 3455556666666554432 2345555555421 1112455677777888888899999999999999999999998
Q ss_pred hHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCCCC
Q 046417 253 LATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGVCE 295 (595)
Q Consensus 253 ~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~~~ 295 (595)
.-.......+.-|..+-||+-|.||--+..+|-.+++..+..+
T Consensus 125 IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 125 IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 6666677778888899999999999999999999998877754
No 210
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=78.68 E-value=67 Score=31.51 Aligned_cols=135 Identities=17% Similarity=0.185 Sum_probs=83.3
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF 134 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~ 134 (595)
+..|++.|.+..-+++..+|..++..++.+.+. ..+-| ...+|+++-...||++.||..|...+..+.+... .
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q--GLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~--s- 78 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQ--GLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE--S- 78 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc--CCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH--H-
Confidence 566777777776677899999999999988873 33344 4568899999999999999999888777776441 1
Q ss_pred hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 046417 135 SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP-EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRV 208 (595)
Q Consensus 135 ~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~-~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a 208 (595)
.+...+.++ ++ .|+.+...+...... .......++.++..+++ ++.+-|...+..|-..+..
T Consensus 79 -~v~~~~~~g--------i~--~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~ 141 (187)
T PF12830_consen 79 -LVESRYSEG--------IR--LAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDF 141 (187)
T ss_pred -HHHHHHHHH--------HH--HHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHh
Confidence 011112222 22 233334443332110 01114567777888887 4445566666666655543
No 211
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=78.39 E-value=1.2e+02 Score=33.75 Aligned_cols=275 Identities=12% Similarity=0.092 Sum_probs=158.8
Q ss_pred CCCCCCChhHHHHHHHHHhhhcC--CCC-------hHHHHHHHHHHHHHhC------CcCcHHHHHHhhhhc--------
Q 046417 9 SASPPPSTNDLKQRVITCLNKLA--DRD-------TLPVATAELESIARTL------TQDSFSSFLNCLQTT-------- 65 (595)
Q Consensus 9 ~~~~~~~~~~lk~rvl~~L~KL~--DrD-------T~r~A~~~LD~lA~~L------~~~~lp~fL~~L~d~-------- 65 (595)
-.++++....+.+++.+|=.-.+ |.. ..+.++.+|-.+..+- +++.++.++..+...
T Consensus 7 dv~~~e~~~lf~~Kl~~C~~ifDF~d~~~d~~~Ke~K~~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~NifR~lP~~ 86 (409)
T PF01603_consen 7 DVPPPERQELFLKKLQQCCVIFDFSDPSSDLKEKEIKRQTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIFRPLPPI 86 (409)
T ss_dssp SS-SSSCSCHTTHHHHHHHHHSTTSSSSSSHHHHHSHHHHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-S-----
T ss_pred CCCcHHHHHHHHHHHHHhCCEeeCCCCccchHHHHHHHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhccCCCCCc
Confidence 44566667888999999888773 433 3455666665555433 244466665555411
Q ss_pred ------------CCCCChHHHHHHHHHHHHHHHHcc-ccchhhHH-HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC
Q 046417 66 ------------DSSSKSPVRKQCVNLLTLLSRSHG-DSLSPHLS-KMISTVSCRLRDPDSSVRSACVAATTAMSLNITK 131 (595)
Q Consensus 66 ------------~ss~kp~vRKaaI~lLG~lAEg~g-d~I~PhLp-kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~ 131 (595)
...+.|++-.-+...|-.+.+... +....|+. +.+..++.++.-+|+.-|+.....|.++-.....
T Consensus 87 ~~~~~~~~~d~~~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~ 166 (409)
T PF01603_consen 87 PNPSFDPDDDEPFLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPN 166 (409)
T ss_dssp SS--S-GGG------TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TT
T ss_pred ccccCCccccccccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 133557877777777777777654 33333443 7788899999999999999999998886655432
Q ss_pred C-cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHhhccCchhH-HHHHHHHHHHHH
Q 046417 132 P-SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVRIEGFKA-KAAVLGVIGSVV 206 (595)
Q Consensus 132 ~-~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~~~~~ka-K~alLsAIgSlA 206 (595)
. +++ .+-.-+...+.+....+.-.-.---|..++.+-..++ .++...+..-|+-|.+.+.+.. ...+..++-.+.
T Consensus 167 ~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~ 246 (409)
T PF01603_consen 167 LRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFL 246 (409)
T ss_dssp THHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 1 111 0222222233111222211111122455566533333 3455555566666666665543 456667776655
Q ss_pred HhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 046417 207 RVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DLATEYKRSCLAALETRRFDKVKIVRETMNRSLE 285 (595)
Q Consensus 207 ~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~ 285 (595)
.- .+.+...++..|..+|.-.+-+.-..-++-|..|...+. +.|......+.+.+..|--- .+. ..+.+||.
T Consensus 247 ~k----dp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S--~h~-qVAErAl~ 319 (409)
T PF01603_consen 247 EK----DPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISS--PHF-QVAERALY 319 (409)
T ss_dssp HH-----GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTS--SSH-HHHHHHHG
T ss_pred Hh----CchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC--CCH-HHHHHHHH
Confidence 32 245678899999999988777777777777777777664 56777777777777777111 122 34688899
Q ss_pred HhHhc
Q 046417 286 MWKEV 290 (595)
Q Consensus 286 ~~K~i 290 (595)
.|..-
T Consensus 320 ~w~n~ 324 (409)
T PF01603_consen 320 FWNNE 324 (409)
T ss_dssp GGGSH
T ss_pred HHCCH
Confidence 99863
No 212
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=78.37 E-value=1.2e+02 Score=34.05 Aligned_cols=184 Identities=13% Similarity=0.154 Sum_probs=110.9
Q ss_pred hHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCC-------------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHH
Q 046417 17 NDLKQRVITCLNKLADRDTLPVATAELESIARTLT-------------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTL 83 (595)
Q Consensus 17 ~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~-------------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~ 83 (595)
....+-.+..|.+.+..||.+..+.-++-|.+..| ++...+|+..|. .+++.....+...++.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~----~~d~~i~~~a~~iLt~ 127 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLN----RQDQFIVHMSFSILAK 127 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHc----CCchhHHHHHHHHHHH
Confidence 45667778888889999999999999988887754 223455555442 4577888888888888
Q ss_pred HHHHccccc-hhhHHHHHHHHHhhccCCC-hhHHHHHHHHHHHhhhhh-cCCcch--hccHHHHHHHhhcC-ChhHHHHH
Q 046417 84 LSRSHGDSL-SPHLSKMISTVSCRLRDPD-SSVRSACVAATTAMSLNI-TKPSFS--VLSKPLIELILVEQ-DVNSQVGG 157 (595)
Q Consensus 84 lAEg~gd~I-~PhLpkIL~~IvrrLkD~d-s~VR~Ac~~aLg~LA~~l-~~~~~~--~~l~PLi~aLl~d~-nk~VQ~~A 157 (595)
++..-.... ...++.++..+...|+.++ ......|+..|..|...= .+..+. ..+++|+..|-... +...|=-+
T Consensus 128 l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 128 LACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred HHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHH
Confidence 875433322 2356667777888887654 456667776666654210 000111 16778888873322 34556677
Q ss_pred HHHH--HHHHhcCCCchHHHH--HHHHHHHHHhhccC-chhHHHHHHHHHHHHHHh
Q 046417 158 AMCL--AAAIDAAPNPEVEQL--RKLLPRLGKAVRIE-GFKAKAAVLGVIGSVVRV 208 (595)
Q Consensus 158 A~cL--aaviE~a~d~~~~~L--~~Ll~rL~klL~~~-~~kaK~alLsAIgSlA~a 208 (595)
++|+ -.+.+.+ .+.+ ..+++.|+.+++.. .=|+--.++.++..+...
T Consensus 208 ll~lWlLSF~~~~----~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 208 IFCIWLLTFNPHA----AEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHHHHHHhccHHH----HHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 7773 3333321 1222 35778888777554 223333445556555553
No 213
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.37 E-value=99 Score=40.53 Aligned_cols=149 Identities=15% Similarity=0.222 Sum_probs=97.5
Q ss_pred HHHHHHHHHccc-cchhh-HHH-HHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh-ccHHHHHHHhhcCChhHH
Q 046417 79 NLLTLLSRSHGD-SLSPH-LSK-MISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV-LSKPLIELILVEQDVNSQ 154 (595)
Q Consensus 79 ~lLG~lAEg~gd-~I~Ph-Lpk-IL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~aLl~d~nk~VQ 154 (595)
.+|+.+++.-+. .+.|+ +.+ .+..++..|--++|..|=++..++++++....++++.. ..+.+|+-|...++++--
T Consensus 854 s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R 933 (2067)
T KOG1822|consen 854 SALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITR 933 (2067)
T ss_pred HHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHH
Confidence 355666666554 34443 222 35567788999999999999999999999998777764 777888888655666554
Q ss_pred HH---HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccC-chhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc
Q 046417 155 VG---GAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIE-GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC 229 (595)
Q Consensus 155 ~~---AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~-~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~ 229 (595)
.+ |-.||.+-+-+... ...+..=+.-++.+-.+. ...++.-.|-++.-++..++..+..|.+.+|-.+...|-
T Consensus 934 ~ghslalg~lhkyvgs~~s--~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLl 1010 (2067)
T KOG1822|consen 934 TGHSLALGCLHKYVGSIGS--GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLL 1010 (2067)
T ss_pred HHHHHHHHHHHHhccCCCC--chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcC
Confidence 44 44445554433221 234444333344444333 446777777778777777777778888888887777764
No 214
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.19 E-value=1.5e+02 Score=36.13 Aligned_cols=155 Identities=14% Similarity=0.087 Sum_probs=80.5
Q ss_pred cccchhh-HHHHHHHHHhhccCC-ChhHHHHHHHHHHHhhhhhcCCcch-h---ccHHHHHHHhhcCChhHHHHHHHHHH
Q 046417 89 GDSLSPH-LSKMISTVSCRLRDP-DSSVRSACVAATTAMSLNITKPSFS-V---LSKPLIELILVEQDVNSQVGGAMCLA 162 (595)
Q Consensus 89 gd~I~Ph-LpkIL~~IvrrLkD~-ds~VR~Ac~~aLg~LA~~l~~~~~~-~---~l~PLi~aLl~d~nk~VQ~~AA~cLa 162 (595)
.+.+..+ +..++|.|+..|++. +..+-.-||.||.-|.+-+..-..+ + .++-|++-|+.=+=-.|.+-+-.||.
T Consensus 201 EesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE 280 (1051)
T KOG0168|consen 201 EESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALE 280 (1051)
T ss_pred hhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 3544332 567788888888885 4567777778888888877431111 1 22333333421000011122222222
Q ss_pred HHHhcCCCchHHHHHH--HH--HHHHHhhccCchhHHHHHHHHHHHHHHhh-cccCcCcHHhHHHHHHHhccCCCHHHHH
Q 046417 163 AAIDAAPNPEVEQLRK--LL--PRLGKAVRIEGFKAKAAVLGVIGSVVRVG-GARSKGVLDWLVPCLVEFLCCDDWATRK 237 (595)
Q Consensus 163 aviE~a~d~~~~~L~~--Ll--~rL~klL~~~~~kaK~alLsAIgSlA~a~-g~~~~~yl~~lmp~L~e~L~~dDW~~Rk 237 (595)
.+-.. -...+|+. |+ -.++..| ...++-.+|..+....... -+.| .|+...+|.|...|...|-+.-.
T Consensus 281 ~iSR~---H~~AiL~AG~l~a~LsylDFF---Si~aQR~AlaiaaN~Cksi~sd~f-~~v~ealPlL~~lLs~~D~k~ie 353 (1051)
T KOG0168|consen 281 KISRR---HPKAILQAGALSAVLSYLDFF---SIHAQRVALAIAANCCKSIRSDEF-HFVMEALPLLTPLLSYQDKKPIE 353 (1051)
T ss_pred HHHhh---ccHHHHhcccHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHHHhhccchhHH
Confidence 22221 11223331 11 1222222 2223333333222222222 2334 45677899999999998889999
Q ss_pred HHHHHHHHHHHHh
Q 046417 238 AAAEVLGKVAVFD 250 (595)
Q Consensus 238 aAaEaLgsIA~av 250 (595)
.++-|+..||...
T Consensus 354 s~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 354 SVCICLTRIADGF 366 (1051)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999864
No 215
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=77.77 E-value=7 Score=34.34 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChh--HHHHHHHHHHHhhhhhc
Q 046417 69 SKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSS--VRSACVAATTAMSLNIT 130 (595)
Q Consensus 69 ~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~--VR~Ac~~aLg~LA~~l~ 130 (595)
+.|..|+.+..+|+.++.-|++.--..-++|+..+.+.|.||... .+--|..+|..|....+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~v 81 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEAV 81 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999999999766566669999999999999765 58888888888877654
No 216
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=77.77 E-value=85 Score=31.92 Aligned_cols=165 Identities=13% Similarity=0.102 Sum_probs=92.6
Q ss_pred CCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh-
Q 046417 68 SSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL- 146 (595)
Q Consensus 68 s~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl- 146 (595)
..+|......+.+|+.+|..- . ...+.++..+......+...++..+..-+..+-..- .....++++++..+.
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~--~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~--~r~f~~L~~~L~~~~~ 85 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHK--N--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN--DRHFPFLQPLLLLLIL 85 (234)
T ss_pred CCChHHHHHHHHHHHHHhccC--c--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC--chHHHHHHHHHHHHHh
Confidence 345666666666655555422 1 455577777777777777666444433333333211 111135555554411
Q ss_pred --------hcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh-ccCchhHHHHHHHHHHHHHHhhcccCcCcH
Q 046417 147 --------VEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAV-RIEGFKAKAAVLGVIGSVVRVGGARSKGVL 217 (595)
Q Consensus 147 --------~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL-~~~~~kaK~alLsAIgSlA~a~g~~~~~yl 217 (595)
++..-..+.+.+.++..+|..-++ .-.++++.|...| ++..--+++..+++|..+-...-..|....
T Consensus 86 r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w 161 (234)
T PF12530_consen 86 RIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAW 161 (234)
T ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 122234567778889999988766 4456666777777 666777888888999988855444433333
Q ss_pred HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 046417 218 DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF 249 (595)
Q Consensus 218 ~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a 249 (595)
. .|...+.. ..|-..+..|..+-..
T Consensus 162 ~----vl~~~l~~---~~rp~v~~~l~~l~~l 186 (234)
T PF12530_consen 162 K----VLQKKLSL---DYRPLVLKSLCSLFAL 186 (234)
T ss_pred H----HHHHhcCC---ccchHHHHHHHHHHHH
Confidence 3 33333422 2334445545555443
No 217
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=77.76 E-value=2.5 Score=30.05 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=23.5
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHhh
Q 046417 99 MISTVSCRLRDPDSSVRSACVAATTAMS 126 (595)
Q Consensus 99 IL~~IvrrLkD~ds~VR~Ac~~aLg~LA 126 (595)
+++.+++.|+.+++.|+..++|+|+.|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4666777778889999999999999886
No 218
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.73 E-value=65 Score=38.36 Aligned_cols=186 Identities=15% Similarity=0.075 Sum_probs=106.4
Q ss_pred hccCCChhHHHHHHHHHHHhhhhh-cCCc----chhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcC-CCchHH----H
Q 046417 106 RLRDPDSSVRSACVAATTAMSLNI-TKPS----FSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAA-PNPEVE----Q 175 (595)
Q Consensus 106 rLkD~ds~VR~Ac~~aLg~LA~~l-~~~~----~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a-~d~~~~----~ 175 (595)
.+.-|.+-|..--...||.|+..= .++. ...+.+|++--=+...|-.||..||.-+-.+.--. ++.-.+ .
T Consensus 138 aiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i 217 (1005)
T KOG1949|consen 138 AIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSI 217 (1005)
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHH
Confidence 344455555555566777777542 2222 11367774443336788889988777543332211 222122 4
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh-cccCcCcHHhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhHHh
Q 046417 176 LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG-GARSKGVLDWLVPCLVEFLC-CDDWATRKAAAEVLGKVAVFDKDL 253 (595)
Q Consensus 176 L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~-g~~~~~yl~~lmp~L~e~L~-~dDW~~RkaAaEaLgsIA~avge~ 253 (595)
+++=-.-+.++|.++-..+|..++--+..+..-- ..--...+..+|..+.+-+. +.--.+|-+..++|..|+..--
T Consensus 218 ~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~-- 295 (1005)
T KOG1949|consen 218 IQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL-- 295 (1005)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc--
Confidence 4555566788999987777765553333333110 00001122334444444443 4456899999999999875321
Q ss_pred HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417 254 ATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 254 f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~ 293 (595)
=.+.....++.|.-.-.|++-.||-|+...|-.+|.+-..
T Consensus 296 sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~ 335 (1005)
T KOG1949|consen 296 SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAA 335 (1005)
T ss_pred chhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhh
Confidence 1112234455666666799999999999998888876544
No 219
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=77.27 E-value=19 Score=32.66 Aligned_cols=125 Identities=14% Similarity=0.081 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCC----ch------------HHHH
Q 046417 113 SVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPN----PE------------VEQL 176 (595)
Q Consensus 113 ~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d----~~------------~~~L 176 (595)
.||.-.+.+++.++.+---..-..++.-++..+. .++.........|..+.|+..+ .. ....
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~--~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQ--SSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 4666677777777755421111136666666662 2444455556667777666322 11 1123
Q ss_pred HHHHHHHHHhhccCc----hhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHH
Q 046417 177 RKLLPRLGKAVRIEG----FKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVL 243 (595)
Q Consensus 177 ~~Ll~rL~klL~~~~----~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaL 243 (595)
+.++.-+.+++.... -....+++.++++...-.... ..+ ..+++.+.++|.+++. |.+|+|||
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~--~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIE--LIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH--HHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH--HhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 345555555554432 455667778888776532211 111 2378888888877664 89999987
No 220
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=77.19 E-value=69 Score=38.40 Aligned_cols=84 Identities=12% Similarity=0.200 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHHhhccCC-ChhHHHHHHHHHHHhhhhhcCCcchh---ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcC
Q 046417 93 SPHLSKMISTVSCRLRDP-DSSVRSACVAATTAMSLNITKPSFSV---LSKPLIELILVEQDVNSQVGGAMCLAAAIDAA 168 (595)
Q Consensus 93 ~PhLpkIL~~IvrrLkD~-ds~VR~Ac~~aLg~LA~~l~~~~~~~---~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a 168 (595)
.|.|-..+=-+++.-+.. +|.+-.-|.+++|++..|+- -.+++ |+.-|+..| +-+.+.++||.|+-++|.--
T Consensus 187 ip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWId-InLIaNd~f~nLLy~fl---~ieelR~aac~cilaiVsKk 262 (980)
T KOG2021|consen 187 IPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWID-INLIANDYFLNLLYKFL---NIEELRIAACNCILAIVSKK 262 (980)
T ss_pred HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhh-hhhhhchhHHHHHHHHH---hHHHHHHHHHHHHHHHHhcC
Confidence 344444444455554555 88899999999999999982 23442 444444444 35678899999999998773
Q ss_pred CCch--HHHHHHHH
Q 046417 169 PNPE--VEQLRKLL 180 (595)
Q Consensus 169 ~d~~--~~~L~~Ll 180 (595)
-++. ++.|+-|+
T Consensus 263 MkP~dKL~lln~L~ 276 (980)
T KOG2021|consen 263 MKPMDKLALLNMLN 276 (980)
T ss_pred CChhHHHHHHHHHH
Confidence 3333 45666653
No 221
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.88 E-value=21 Score=36.65 Aligned_cols=102 Identities=22% Similarity=0.245 Sum_probs=77.8
Q ss_pred ccC-chhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH---hHHhHHHHHHHHHH
Q 046417 188 RIE-GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF---DKDLATEYKRSCLA 263 (595)
Q Consensus 188 ~~~-~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a---vge~f~py~~~~I~ 263 (595)
+++ .|-++..+.+.| .+++....|.++.++..|...|...|-++-..++.+|..|... +|..+.||-.+++.
T Consensus 127 ~hpyrf~A~~Gi~DLL----l~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp 202 (262)
T KOG3961|consen 127 DHPYRFVARQGITDLL----LAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPFYRQLLP 202 (262)
T ss_pred CCCcchhhhhcHHHHH----HhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhh
Confidence 344 555666655544 4566667899999999999999999989999999999888654 57888898888888
Q ss_pred HHHhcc-----------CCchHHHHHHHHHHHHHhHhcCCC
Q 046417 264 ALETRR-----------FDKVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 264 ~Le~cr-----------fDKVK~VRda~~~aL~~~K~i~~~ 293 (595)
+|...| |||---+-|.+++.|+.+-.-.|.
T Consensus 203 ~~n~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~GGp 243 (262)
T KOG3961|consen 203 VLNTFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSGGP 243 (262)
T ss_pred hhhhhcccccccccccCccccccHHHHHHHHHHHHHHcCCc
Confidence 776443 567777888899999888755544
No 222
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=76.50 E-value=43 Score=38.03 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHH---HHHHHHccccc-
Q 046417 17 NDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLL---TLLSRSHGDSL- 92 (595)
Q Consensus 17 ~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lL---G~lAEg~gd~I- 92 (595)
..+|.|+|+.|.| -.+|....+..+..+..+|.... .....|-.++.-+ .-+...++..+
T Consensus 297 ~~lq~kIL~~L~k--------------S~~Aa~~~~~~~~i~~~~l~~~~--~~~klk~~~l~F~~~~~~~~~~~~~~~l 360 (501)
T PF13001_consen 297 PRLQEKILSLLSK--------------SVIAATSFPNILQIVFDGLYSDN--TNSKLKSLALQFIRGSSWIFKHISPQIL 360 (501)
T ss_pred HHHHHHHHHHHHH--------------hHHHHhCCccHHHHHhccccCCc--cccccchhcchhhhcchHHhhhcCHHHH
Confidence 4699999999998 12344444555666666665431 2567777888887 77777776444
Q ss_pred hhhHHHHHHHHHhhccC--------CChhHHHHHHHHHHHhhhhhcCC--cchhccHHHHHHHhhcCChhHHHHHHHHHH
Q 046417 93 SPHLSKMISTVSCRLRD--------PDSSVRSACVAATTAMSLNITKP--SFSVLSKPLIELILVEQDVNSQVGGAMCLA 162 (595)
Q Consensus 93 ~PhLpkIL~~IvrrLkD--------~ds~VR~Ac~~aLg~LA~~l~~~--~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLa 162 (595)
...=+-|+.-+.+.+.+ .+...|.-+-.|||.|+.....- ....++.=||++| .+..+.+-...--||.
T Consensus 361 ~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL-~~~~~evr~sIqeALs 439 (501)
T PF13001_consen 361 KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSL-EDESPEVRVSIQEALS 439 (501)
T ss_pred HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHh-hCcchHHHHHHHHHHH
Confidence 33334445555566631 24458999999999999877431 1124888899999 5444444444444444
Q ss_pred HHHhc
Q 046417 163 AAIDA 167 (595)
Q Consensus 163 aviE~ 167 (595)
.+...
T Consensus 440 sl~~a 444 (501)
T PF13001_consen 440 SLAPA 444 (501)
T ss_pred HHHHH
Confidence 44444
No 223
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=76.48 E-value=1.3e+02 Score=33.34 Aligned_cols=203 Identities=16% Similarity=0.203 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHccccchh-hHHHHHHHHHhhccCCChhH-HHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh---c
Q 046417 74 RKQCVNLLTLLSRSHGDSLSP-HLSKMISTVSCRLRDPDSSV-RSACVAATTAMSLNITKPSFSVLSKPLIELILV---E 148 (595)
Q Consensus 74 RKaaI~lLG~lAEg~gd~I~P-hLpkIL~~IvrrLkD~ds~V-R~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~---d 148 (595)
=.+.+..||-+..|+.-.+.+ |..-+...|+...+.+.-.. +..-...+.++.+.= + .+..+++..|+. -
T Consensus 192 I~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd---p--~l~~~~i~~llk~WP~ 266 (409)
T PF01603_consen 192 IAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD---P--SLAEPVIKGLLKHWPK 266 (409)
T ss_dssp HHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH----G--GGHHHHHHHHHHHS-S
T ss_pred HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC---c--hhHHHHHHHHHHhCCC
Confidence 334444444444444433322 33333334444444433222 333333333333211 1 356677777764 2
Q ss_pred CChhHHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHh
Q 046417 149 QDVNSQVGGAMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEF 227 (595)
Q Consensus 149 ~nk~VQ~~AA~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~ 227 (595)
.+..-|..--.=|..+++..++.. ..+...|+.++.+++.++++++-..++.....-.-.. ....+-..++|.+.+.
T Consensus 267 t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~--li~~~~~~i~p~i~~~ 344 (409)
T PF01603_consen 267 TNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLS--LISQNSRVILPIIFPA 344 (409)
T ss_dssp S-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHH--HHHCTHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHH--HHHhChHHHHHHHHHH
Confidence 344444444444666666544322 4677889999999999999998766663222111000 0123345566666666
Q ss_pred cc---CCCH--HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417 228 LC---CDDW--ATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 228 L~---~dDW--~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~ 291 (595)
|. ...| .+|..|..+|..+...-.+.|.. |...+. ++.+--.+...+..+.|++|.
T Consensus 345 L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~----~~~~~~----~~~~~~~~~~~~r~~~W~~i~ 405 (409)
T PF01603_consen 345 LYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK----CAQKYK----EKEQKEKAREKKRKKKWKKIE 405 (409)
T ss_dssp HSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH----HHHHHH----HHHHHHHHSSHHHHHHHTT-S
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH----HHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 53 2344 57999999999888877777664 332322 112222223355667888876
No 224
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=76.01 E-value=19 Score=40.86 Aligned_cols=180 Identities=20% Similarity=0.205 Sum_probs=101.1
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh----------cCChhHHHHHHHHHHHHHhc
Q 046417 98 KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV----------EQDVNSQVGGAMCLAAAIDA 167 (595)
Q Consensus 98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~----------d~nk~VQ~~AA~cLaaviE~ 167 (595)
.++++|+-. .|+...|-+.+-..|-++.-.+.+. .++..|+...+| --+..+|...-.-|.+-+..
T Consensus 238 ~~~~~liAs-ad~~~~V~~~ae~~LKr~~~~~ed~---~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A 313 (501)
T PF13001_consen 238 RFPPLLIAS-ADSNSSVSDRAEDLLKRLSVSLEDP---DLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA 313 (501)
T ss_pred HHhheeeEE-eCCcchHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH
Confidence 334444444 7888889888888888887665332 366777777763 12334444443334443332
Q ss_pred CCCchHHHHHHHHHHHHHhhccC--chhHHHHHHHHH---HHHHHhhcccCcCcHHhHHHHHH----Hhc--------cC
Q 046417 168 APNPEVEQLRKLLPRLGKAVRIE--GFKAKAAVLGVI---GSVVRVGGARSKGVLDWLVPCLV----EFL--------CC 230 (595)
Q Consensus 168 a~d~~~~~L~~Ll~rL~klL~~~--~~kaK~alLsAI---gSlA~a~g~~~~~yl~~lmp~L~----e~L--------~~ 230 (595)
+. ..+.++.-+...|.++ ..++|...+..+ ..+....+. .++..+-|.|. ..+ ..
T Consensus 314 a~-----~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~---~~l~~l~~~i~~~g~p~~~~~~~~~~~~ 385 (501)
T PF13001_consen 314 AT-----SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISP---QILKLLRPVILSQGWPLIQDSSSQSNSS 385 (501)
T ss_pred Hh-----CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCH---HHHHHHHHHHHhcCccccccccccCCCc
Confidence 21 1122222233334444 556666666666 433332221 12222222222 112 23
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHhHHH---HHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417 231 DDWATRKAAAEVLGKVAVFDKDLATE---YKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 231 dDW~~RkaAaEaLgsIA~avge~f~p---y~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~ 293 (595)
++-.+|..|.|+||.|+......|.. +.......|+ +--.-||-++.+||..|..-...
T Consensus 386 ~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~----~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 386 EDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLE----DESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred ccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhh----CcchHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999987665532 3444444454 55788888888888888765533
No 225
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=75.68 E-value=6.4 Score=34.73 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhh
Q 046417 72 PVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMS 126 (595)
Q Consensus 72 ~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA 126 (595)
..|-++++.|+.+..+++-.+=++||++|..+.+...| ...|+...-.+|+.|=
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFk 57 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFK 57 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHH
Confidence 45778999999999999988989999999999999998 4457777777777765
No 226
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=75.37 E-value=5.1 Score=38.38 Aligned_cols=134 Identities=20% Similarity=0.170 Sum_probs=79.4
Q ss_pred CChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH--HHHHHHHHHhh
Q 046417 110 PDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL--RKLLPRLGKAV 187 (595)
Q Consensus 110 ~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L--~~Ll~rL~klL 187 (595)
..+.||..+.-++.++- ...++.+...+...+..++.+.+..-...++.+|.++....++.....+ +.+++-+..+.
T Consensus 17 ~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~ 95 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA 95 (157)
T ss_dssp TSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence 45568888888888873 2211222236666677776433333556677777887766544433322 23666666666
Q ss_pred c--cCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc-CCCHH-HHHHHHHHHHH
Q 046417 188 R--IEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC-CDDWA-TRKAAAEVLGK 245 (595)
Q Consensus 188 ~--~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~-~dDW~-~RkaAaEaLgs 245 (595)
. +++.....+++.+|.+...-..- -....+..++.|.+.+. +++-. .|..|+-.|.+
T Consensus 96 ~~~~~~~~~~~~~lell~aAc~d~~~-r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 96 SRKSKDRKVQKAALELLSAACIDKSC-RTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp H-CTS-HHHHHHHHHHHHHHTTSHHH-HHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hcccCCHHHHHHHHHHHHHHHccHHH-HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 6 67777788888888754321111 12335777888999985 44444 67777766654
No 227
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=74.45 E-value=40 Score=39.89 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=81.0
Q ss_pred HHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHh
Q 046417 46 IARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAM 125 (595)
Q Consensus 46 lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~L 125 (595)
+-.+|..+.=+.++..|.++.-+.+ ...++.+|+. .. -||=..++..|-.-+..++ -|-.+..-||.|
T Consensus 28 ~~~~~~~~~~~~l~~~l~~y~~~t~------s~~~~~il~~-~~---~P~~K~~~~~l~~~~~~~~--~Rl~~L~Ll~~~ 95 (668)
T PF04388_consen 28 LQELLNSDREPWLVNGLVDYYLSTN------SQRALEILVG-VQ---EPHDKHLFDKLNDYFVKPS--YRLQALTLLGHF 95 (668)
T ss_pred HHHHhhccchHHHHHHHHHHHhhcC------cHHHHHHHHh-cC---CccHHHHHHHHHHHHcCch--hHHHHHHHHHHH
Confidence 3344554444455555555532222 2233333331 11 3444455555555665554 454554444554
Q ss_pred hhhhcCCcc-------hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc
Q 046417 126 SLNITKPSF-------SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG 191 (595)
Q Consensus 126 A~~l~~~~~-------~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~ 191 (595)
.. .+|. ..+|.-|+..|..|.+..+-..|.+||..++-..+..+.+||+.|..-+..++.|..
T Consensus 96 v~---~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl~~W~~ 165 (668)
T PF04388_consen 96 VR---SQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRLLSWER 165 (668)
T ss_pred Hh---cCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHccc
Confidence 43 2221 137777777777788988999999999999998887788999999999999997764
No 228
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=73.94 E-value=1.4e+02 Score=32.68 Aligned_cols=262 Identities=13% Similarity=0.136 Sum_probs=129.5
Q ss_pred HHHHHHHHHhhhc-CCCChHHHHHHHHHHHHHh--------CC---cCcHHHHHHhhhhcC-------C---CCC----h
Q 046417 18 DLKQRVITCLNKL-ADRDTLPVATAELESIART--------LT---QDSFSSFLNCLQTTD-------S---SSK----S 71 (595)
Q Consensus 18 ~lk~rvl~~L~KL-~DrDT~r~A~~~LD~lA~~--------L~---~~~lp~fL~~L~d~~-------s---s~k----p 71 (595)
+|=+++.+.+... .|.+..+..++.|..+.+. || .+.+..++..+.... . .+. +
T Consensus 31 ~l~~~~~~~i~~~~~~~~~l~~~~~~l~lilKiF~sL~~~DLPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~ 110 (370)
T PF08506_consen 31 ELFKQTDQLIEANANNAASLKVLFEMLKLILKIFYSLNCQDLPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLE 110 (370)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHSSS--HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHccCcCcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHH
Confidence 3455566666654 3555666777777776664 34 223444444332211 1 111 3
Q ss_pred HHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChh-----HHHHHHHHHHHhhhhhcCC-cch--hccHHHHH
Q 046417 72 PVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSS-----VRSACVAATTAMSLNITKP-SFS--VLSKPLIE 143 (595)
Q Consensus 72 ~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~-----VR~Ac~~aLg~LA~~l~~~-~~~--~~l~PLi~ 143 (595)
.++...+..+...++-+.|...||++.++..+...|..-... +-..|..-|+.+++..... .+. ..+.-+++
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie 190 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIE 190 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHH
Confidence 677888888888888888988999999999888887553222 1122233344433221100 000 01111222
Q ss_pred H--------------Hhh-cCC------------hhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh---ccCchh
Q 046417 144 L--------------ILV-EQD------------VNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAV---RIEGFK 193 (595)
Q Consensus 144 a--------------Ll~-d~n------------k~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL---~~~~~k 193 (595)
. |+. |+. -..-.+|+-.|.++++.-.....+.+..++..++.-. ...+.+
T Consensus 191 ~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~ 270 (370)
T PF08506_consen 191 KVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWR 270 (370)
T ss_dssp HTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HH
T ss_pred HhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHH
Confidence 1 111 111 1233466666777776522222233322222222211 134667
Q ss_pred HHHHHHHHHHHHHHhhcccC------------cCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-HhHHHHHH
Q 046417 194 AKAAVLGVIGSVVRVGGARS------------KGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DLATEYKR 259 (595)
Q Consensus 194 aK~alLsAIgSlA~a~g~~~------------~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~f~py~~ 259 (595)
.|-++|-.+++++..+.... ..+| ..++|-|.. -.+..=-+|..|+..+......+. +.+....+
T Consensus 271 ~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~-~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~ 349 (370)
T PF08506_consen 271 SKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQP-DVNSHPILKADAIKFLYTFRNQLPKEQLLQIFP 349 (370)
T ss_dssp HHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcc-cCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 89999999999997542211 1222 223454541 112233467777777777766654 34444444
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHH
Q 046417 260 SCLAALETRRFDKVKIVRETMNRSL 284 (595)
Q Consensus 260 ~~I~~Le~crfDKVK~VRda~~~aL 284 (595)
.++..|. +.-..|+.=+..+|
T Consensus 350 ~l~~~L~----~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 350 LLVNHLQ----SSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTT----SS-HHHHHHHHHHH
T ss_pred HHHHHhC----CCCcchhhhhhhhC
Confidence 4444444 66778888776654
No 229
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=73.77 E-value=88 Score=36.14 Aligned_cols=139 Identities=15% Similarity=0.152 Sum_probs=74.5
Q ss_pred HHHHHHHHHhCCcCcHHHHHHhhhhcCC-CCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhH----
Q 046417 40 TAELESIARTLTQDSFSSFLNCLQTTDS-SSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSV---- 114 (595)
Q Consensus 40 ~~~LD~lA~~L~~~~lp~fL~~L~d~~s-s~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~V---- 114 (595)
+.+|-..+..|+.. ...++..|....- .-++..+++-+..++.|+..++. |++.++..+++.+..+....
T Consensus 57 L~~L~~~Vs~Ld~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~----yl~~vl~~LV~~f~p~~~~~~~~~ 131 (563)
T PF05327_consen 57 LKALSSCVSLLDSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPK----YLSPVLSMLVKNFIPPPSSIAEWP 131 (563)
T ss_dssp HHHHHHGGGGG-SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GG----GHHHHHHHHHHGGGS-HHHHHH--
T ss_pred HHHHHHHHHHhhhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHhccCCCccccccc
Confidence 33444444445554 6666666665432 23457788888889999999987 56667777777766654432
Q ss_pred ----------HHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhh--cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 046417 115 ----------RSACVAATTAMSLNITKPSFS-VLSKPLIELILV--EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLP 181 (595)
Q Consensus 115 ----------R~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~--d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~ 181 (595)
..-+-.+|..+.+.+ |.. ..+.|++..-+- ......+..=...|=.+++.++..-..++.-++.
T Consensus 132 ~~~~~~~~~~~~~vH~~L~~Il~lv---P~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~L~~~Il~lIi~ 208 (563)
T PF05327_consen 132 GCPPEKRREIYERVHDALQKILRLV---PTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPELRSDILSLIIE 208 (563)
T ss_dssp -------------HHHHHHHHHHH----GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHc---CCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 223445556666554 221 244444333322 2334455555555666666665544567777777
Q ss_pred HHHHh
Q 046417 182 RLGKA 186 (595)
Q Consensus 182 rL~kl 186 (595)
|++++
T Consensus 209 rLi~i 213 (563)
T PF05327_consen 209 RLIKI 213 (563)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
No 230
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=73.72 E-value=39 Score=33.21 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHh
Q 046417 175 QLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDL 253 (595)
Q Consensus 175 ~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~ 253 (595)
.++..+++++++.-++..+++.+++..|+.+..-|=. .| ..++|.|+...+|++-..|..|...+..+..-.+..
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv--nP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLV--NP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC--Ch--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 5677888888888888999999999999988864332 23 468999999999999999999999999997766443
No 231
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=73.55 E-value=54 Score=43.95 Aligned_cols=228 Identities=15% Similarity=0.153 Sum_probs=119.5
Q ss_pred HhhhcCCCC-hHHHHHHHHHHHHHhCCcCcHHHHHHh-hhhcCCCCChHHHHHHHHHHHHHHHHcc--ccchhhHHHHHH
Q 046417 26 CLNKLADRD-TLPVATAELESIARTLTQDSFSSFLNC-LQTTDSSSKSPVRKQCVNLLTLLSRSHG--DSLSPHLSKMIS 101 (595)
Q Consensus 26 ~L~KL~DrD-T~r~A~~~LD~lA~~L~~~~lp~fL~~-L~d~~ss~kp~vRKaaI~lLG~lAEg~g--d~I~PhLpkIL~ 101 (595)
.+-|.++.- ....|...|..+-...- ....|+.+ +......+++..|+.+.+-.-.+-.... ....||.-+.+.
T Consensus 450 ~~~~~~~~~~~~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~ 527 (2341)
T KOG0891|consen 450 ILQKTGDSTDDIQLAFKTLGGFKFSGY--SLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVK 527 (2341)
T ss_pred hhhhcccccHHHHHHHHHHhhhhhhhh--hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHH
Confidence 566666433 34445566555554421 13333333 4555566789999999554333222221 122343333333
Q ss_pred HHH-----hhccCCChhHHHHHHHHHH-HhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHH
Q 046417 102 TVS-----CRLRDPDSSVRSACVAATT-AMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQ 175 (595)
Q Consensus 102 ~Iv-----rrLkD~ds~VR~Ac~~aLg-~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~ 175 (595)
.++ =.+.|+++.+|.+....+. ++-.+++. + ..+.-++.+| ++..-..|.++-..+..+.+..+..+++.
T Consensus 528 ~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~laQ-~--~~lr~~~~al-~~~~l~~~~~~~~~ig~l~~~~~a~vl~~ 603 (2341)
T KOG0891|consen 528 EVLSALLTVAIADTDPDIRIRVLSSLNERFDAQLAQ-P--DLLRLLFIAL-HDENFAIQELATVIIGRLSSYNPAYVLPS 603 (2341)
T ss_pred HHHHHHHHHhccCCCcchhhhHHhhhccchhhhhcC-c--hhHHHHHHHh-hhhhhhhHHhHHhhccccccccHHHHhHH
Confidence 333 3478899999999988876 22222332 2 1233356666 44454556655554554444433333455
Q ss_pred HHHHHHHHHHhhc-cCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhH
Q 046417 176 LRKLLPRLGKAVR-IEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLA 254 (595)
Q Consensus 176 L~~Ll~rL~klL~-~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f 254 (595)
+.........-++ +.....+.....-...++........+|...++-.+...|.+.+-.+=+++.++++.|+...|..+
T Consensus 604 lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~ 683 (2341)
T KOG0891|consen 604 LRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEM 683 (2341)
T ss_pred HHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchh
Confidence 5543333332222 112122222221122222211122357777778888888888887888999999999999888555
Q ss_pred HHHHH
Q 046417 255 TEYKR 259 (595)
Q Consensus 255 ~py~~ 259 (595)
..+..
T Consensus 684 ~~~~~ 688 (2341)
T KOG0891|consen 684 VKWVD 688 (2341)
T ss_pred hhccc
Confidence 44443
No 232
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=73.28 E-value=74 Score=30.10 Aligned_cols=83 Identities=13% Similarity=0.125 Sum_probs=47.3
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccchhhHHHH
Q 046417 21 QRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSLSPHLSKM 99 (595)
Q Consensus 21 ~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I~PhLpkI 99 (595)
+++-.+|+||++.. ....+.+|..+.....++.+..++..|.+... ..|........+.+.+...++ ++....|..+
T Consensus 2 r~v~~~lnklt~~n-~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~-~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~ 79 (209)
T PF02854_consen 2 RKVRGILNKLTPSN-FESIIDELIKLNWSDDPETLKEIVKLIFEKAV-EEPNFSPLYARLCAALNSRFPSEFRSLLLNRC 79 (209)
T ss_dssp HHHHHHHHHCSSTT-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred chHHHHHHHCCHHH-HHHHHHHHHHHHhhccHHHHHHHHHHHhhhhh-cCchHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 46778999999644 44455555555555455667777877776532 224445555555556666555 4333333333
Q ss_pred HHHHHh
Q 046417 100 ISTVSC 105 (595)
Q Consensus 100 L~~Ivr 105 (595)
...+..
T Consensus 80 ~~~f~~ 85 (209)
T PF02854_consen 80 QEEFEE 85 (209)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 233
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=72.98 E-value=1.7e+02 Score=33.19 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=54.6
Q ss_pred HHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc---cccc-hhhHHHHHHHHHh-hccCCChhHHHHHHHHHHHhhh
Q 046417 57 SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH---GDSL-SPHLSKMISTVSC-RLRDPDSSVRSACVAATTAMSL 127 (595)
Q Consensus 57 ~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~---gd~I-~PhLpkIL~~Ivr-rLkD~ds~VR~Ac~~aLg~LA~ 127 (595)
.||..+.+-+.+++...--.+.+++|.+|+.- -.++ ...+.++|..+.+ .--|.+..++.||+-||..|+-
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 36666666666777888889999999999753 3344 4578899998888 5677788889999999887763
No 234
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.26 E-value=2.8e+02 Score=35.63 Aligned_cols=262 Identities=14% Similarity=0.126 Sum_probs=138.3
Q ss_pred hHHHHHHHHHhhhc-CCCChHHHHHHHHHHHHHh-CCcCcHHHHHHhh-hhcCCCCChHHHHHHHHHHHHHHHHccccch
Q 046417 17 NDLKQRVITCLNKL-ADRDTLPVATAELESIART-LTQDSFSSFLNCL-QTTDSSSKSPVRKQCVNLLTLLSRSHGDSLS 93 (595)
Q Consensus 17 ~~lk~rvl~~L~KL-~DrDT~r~A~~~LD~lA~~-L~~~~lp~fL~~L-~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~ 93 (595)
.+|+++...+|.-+ .|-++++.--...|.++.+ +.-+....|++.+ .....++.-.+|...+.++--+-|.+|+++.
T Consensus 799 ~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll 878 (1610)
T KOG1848|consen 799 PELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLL 878 (1610)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhc
Confidence 46666666666554 3444555555555555553 2222222333222 2224566778999999999999999998773
Q ss_pred ---hhHHHHHHHHHhhccCCC---------------------------hhHHHHHHHHHHHhhhhhcCCcch----hccH
Q 046417 94 ---PHLSKMISTVSCRLRDPD---------------------------SSVRSACVAATTAMSLNITKPSFS----VLSK 139 (595)
Q Consensus 94 ---PhLpkIL~~IvrrLkD~d---------------------------s~VR~Ac~~aLg~LA~~l~~~~~~----~~l~ 139 (595)
+++-+|+. .+-|.+ -.+-.-|.+|++.|+..-.+.... .+|=
T Consensus 879 ~~w~sV~eml~----s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfW 954 (1610)
T KOG1848|consen 879 HGWQSVFEMLR----SATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFW 954 (1610)
T ss_pred cccHHHHHHHH----HHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHH
Confidence 44444444 333333 122334455555555544432111 1222
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHHhcC--CCchHHHH-----HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhccc
Q 046417 140 PLIELILVEQDVNSQVGGAMCLAAAIDAA--PNPEVEQL-----RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR 212 (595)
Q Consensus 140 PLi~aLl~d~nk~VQ~~AA~cLaaviE~a--~d~~~~~L-----~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~ 212 (595)
.+-+.|- .+...+-..++. ...+|.. .-.....+ =-|+..|.++-++..+.+|+.+...+=-|+.+-|-.
T Consensus 955 tvsDfl~-~km~S~sed~~~--~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~ 1031 (1610)
T KOG1848|consen 955 TVSDFLK-NKMFSTSEDSCA--YNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSK 1031 (1610)
T ss_pred HHHHHHH-hhhhccchhhhh--hcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhccc
Confidence 2223321 101111111111 2222221 00011122 235677778888889999987654444444443433
Q ss_pred CcC-----cH-HhHHHHHH-------HhccC----CCHHHHHHHHHHHHHHHHHhHHhHHHHH---------HHHHHHHH
Q 046417 213 SKG-----VL-DWLVPCLV-------EFLCC----DDWATRKAAAEVLGKVAVFDKDLATEYK---------RSCLAALE 266 (595)
Q Consensus 213 ~~~-----yl-~~lmp~L~-------e~L~~----dDW~~RkaAaEaLgsIA~avge~f~py~---------~~~I~~Le 266 (595)
+.+ ++ ..+||.|. +-|.. ++|. .-.+-+|+.||....+.|.-+. +..+.+|.
T Consensus 1032 l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwt--et~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flk 1109 (1610)
T KOG1848|consen 1032 LGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWT--ETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLK 1109 (1610)
T ss_pred CChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhh--hhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 333 22 33455554 22321 3344 2367788999988776555443 56777788
Q ss_pred hccCCchHHHHHHHHHHHHHh
Q 046417 267 TRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 267 ~crfDKVK~VRda~~~aL~~~ 287 (595)
..-+|--+-+--+++.++|.+
T Consensus 1110 rl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1110 RLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred HHHhcCChHhHHHHHHHHHHH
Confidence 888888888888888888864
No 235
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=72.05 E-value=8.1 Score=35.89 Aligned_cols=68 Identities=6% Similarity=0.062 Sum_probs=49.3
Q ss_pred HHHHHHHhhcc-CCChhHHHHHHHHHHHhhhhhcCCcch---hccHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046417 98 KMISTVSCRLR-DPDSSVRSACVAATTAMSLNITKPSFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAI 165 (595)
Q Consensus 98 kIL~~IvrrLk-D~ds~VR~Ac~~aLg~LA~~l~~~~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaavi 165 (595)
+++..+++.|. ..|+.+-.++|.=+|.|+++......+ .-.+..+..|+.+.|+.|+--|-.|+.+++
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45556666663 348889999999999999998432111 156777888888999999999999998875
No 236
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=71.94 E-value=2.1e+02 Score=37.06 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHH-HHHHHHHHHHHccccchhhH
Q 046417 18 DLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQ-CVNLLTLLSRSHGDSLSPHL 96 (595)
Q Consensus 18 ~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKa-aI~lLG~lAEg~gd~I~PhL 96 (595)
.+++-+|+.|-++=|++.+.-++..|..+-.. +++...++|.+|....- .+....+ --++++.+. ++ -...|
T Consensus 207 ~lq~eiI~~LPeIl~ds~h~~v~~~L~~ll~~-~~~L~~~iLd~Ls~L~L--s~~~l~~vr~~vl~~L~-s~---~~e~L 279 (1426)
T PF14631_consen 207 ELQKEIISSLPEILDDSQHDEVVEELLELLQE-NPELTVPILDALSNLNL--SPELLEEVREKVLEKLS-SV---DLEDL 279 (1426)
T ss_dssp TTHHHHHHTHHHHS-GGGHHHHHHHHHHHHHH--STTHHHHHHHHHHS-----HHHHHHHHHHHHHSTT-SS----TTHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhc-CCchhhhHHHHHhcCCC--CHHHHHHHHHHHHHHHh-cC---Chhhh
Confidence 48888999999998778888888888766554 35557788999987532 2322222 222223332 22 24468
Q ss_pred HHHHHHHHhhccCCCh
Q 046417 97 SKMISTVSCRLRDPDS 112 (595)
Q Consensus 97 pkIL~~IvrrLkD~ds 112 (595)
|-+|.||++.+...|.
T Consensus 280 P~lirFLL~s~t~~da 295 (1426)
T PF14631_consen 280 PVLIRFLLQSITPSDA 295 (1426)
T ss_dssp HHHHHHHHHS-SSTTH
T ss_pred HHHHHHHHHhCCcccH
Confidence 9999999998887664
No 237
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=71.58 E-value=27 Score=36.89 Aligned_cols=59 Identities=19% Similarity=0.335 Sum_probs=39.9
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHh
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAM 125 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~L 125 (595)
+|.+...|.+. ...|.+|-+|..+||.+|. ++-+..|.+.+.|+++.||.-|..+|-.+
T Consensus 220 i~~L~k~L~d~--~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 220 IPSLIKVLLDE--TEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hHHHHHHHHhh--hcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 55555555543 3457888888888887775 24556777777888888888887776544
No 238
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.68 E-value=1.8e+02 Score=35.35 Aligned_cols=71 Identities=20% Similarity=0.192 Sum_probs=52.9
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc---hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL---SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI 129 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I---~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l 129 (595)
|..+|..+. ..+-.+|..+|.+|..+-..-|--+ .--.|.=|+.++-.|.|....||..+.--|..+....
T Consensus 124 I~lll~~~e----~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 124 ITLLLQSLE----EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDN 197 (970)
T ss_pred HHHHHHHHH----hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccC
Confidence 444444444 3467899999999999988877322 2235677889999999999999999987777776544
No 239
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=69.38 E-value=1.1e+02 Score=35.49 Aligned_cols=98 Identities=14% Similarity=0.201 Sum_probs=57.8
Q ss_pred ccchhhHHHHHHHHHhhc----------cCCChhHHHHHHHHHHHhhhhhcCC--cch-hccHHHHHHHhhc-CChhHHH
Q 046417 90 DSLSPHLSKMISTVSCRL----------RDPDSSVRSACVAATTAMSLNITKP--SFS-VLSKPLIELILVE-QDVNSQV 155 (595)
Q Consensus 90 d~I~PhLpkIL~~IvrrL----------kD~ds~VR~Ac~~aLg~LA~~l~~~--~~~-~~l~PLi~aLl~d-~nk~VQ~ 155 (595)
=++-|||..+||.|+..+ -|.+-.+|+-++..++.++....+. .+. .++.-|..++++. +....+=
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhh
Confidence 356788888888776432 2334558999999999888776532 111 2566667777543 2333455
Q ss_pred HHHHHHHHHHhcC-CCchHHHHHHHHHHHHHhh
Q 046417 156 GGAMCLAAAIDAA-PNPEVEQLRKLLPRLGKAV 187 (595)
Q Consensus 156 ~AA~cLaaviE~a-~d~~~~~L~~Ll~rL~klL 187 (595)
||..+|..+.-.. .-.+.|-|.....++-.-+
T Consensus 360 Gai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l 392 (576)
T KOG2549|consen 360 GAIAGLSELGHEVIRTVILPNLKEYNERLQSVL 392 (576)
T ss_pred hHHHHHHHhhhhhhhheeccchHHHHHHhhhhc
Confidence 6666688776542 2333455555555544444
No 240
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.75 E-value=15 Score=46.45 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=61.3
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI 129 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l 129 (595)
+++++..+.-...+.....|-.+|..+-.+..--|+...++||+++|+|...+.|-+-.|-..|...+-++=+.+
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~l 1613 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVL 1613 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 555555554444445678999999999999999999999999999999999999999999989988666555544
No 241
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=67.89 E-value=13 Score=36.41 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh
Q 046417 71 SPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI 129 (595)
Q Consensus 71 p~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l 129 (595)
-..||.|.-.+-.+-+.|.+.+- +..++..|..+|.| +..|+--|+--|.+|+...
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC
Confidence 47999999999999999987773 77889999999999 9999999999999998755
No 242
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=67.79 E-value=11 Score=27.53 Aligned_cols=28 Identities=36% Similarity=0.400 Sum_probs=26.1
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 046417 220 LVPCLVEFLCCDDWATRKAAAEVLGKVA 247 (595)
Q Consensus 220 lmp~L~e~L~~dDW~~RkaAaEaLgsIA 247 (595)
.+|.|.++|.+.+-.+|+.|+-+|+.|+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999986
No 243
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=67.58 E-value=1.5e+02 Score=33.25 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=28.9
Q ss_pred ChHHHHHHHHHHHHHHHHccccchhh--HH--HHHHHHHhhccCCChhH
Q 046417 70 KSPVRKQCVNLLTLLSRSHGDSLSPH--LS--KMISTVSCRLRDPDSSV 114 (595)
Q Consensus 70 kp~vRKaaI~lLG~lAEg~gd~I~Ph--Lp--kIL~~IvrrLkD~ds~V 114 (595)
+..+-+.|+..|+.+.-+.++.-.|. .. -+++.+...++-.++.|
T Consensus 269 ~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v 317 (464)
T PF11864_consen 269 DINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRV 317 (464)
T ss_pred cHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCee
Confidence 34555688888888887775433333 22 37777777777666654
No 244
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=67.39 E-value=80 Score=29.46 Aligned_cols=76 Identities=13% Similarity=0.042 Sum_probs=56.3
Q ss_pred HHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHH------HHHHHHHHHhccCCchHHHHHHHHHHHHHhHhc
Q 046417 217 LDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEY------KRSCLAALETRRFDKVKIVRETMNRSLEMWKEV 290 (595)
Q Consensus 217 l~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py------~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i 290 (595)
...++..|...|.+.+=.+..-|+..|-.+...+|..|... ...+.+++..-..+....||+-+.+.|+.|..-
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 35567778888888887888889999999999998655433 345555555554444444999999999999987
Q ss_pred CC
Q 046417 291 PG 292 (595)
Q Consensus 291 ~~ 292 (595)
..
T Consensus 120 f~ 121 (140)
T PF00790_consen 120 FK 121 (140)
T ss_dssp TT
T ss_pred HC
Confidence 73
No 245
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.62 E-value=3.7e+02 Score=34.51 Aligned_cols=74 Identities=22% Similarity=0.118 Sum_probs=53.0
Q ss_pred CcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH-hHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCC
Q 046417 215 GVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD-LATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPG 292 (595)
Q Consensus 215 ~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge-~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~ 292 (595)
+.+-.++|.|..-|.+++-..|+.|...+|.|-..-+. .+..|-+-+-.+|.++ +|+...||-. .++..+++.-
T Consensus 255 ~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~-~D~~~~vR~~---~v~~~~~~l~ 329 (1266)
T KOG1525|consen 255 QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRF-NDISVEVRME---CVESIKQCLL 329 (1266)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHh-ccCChhhhhh---HHHHhHHHHh
Confidence 34566788888888888889999999999999776553 4444555555555555 7999999954 5555565543
No 246
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=66.50 E-value=16 Score=36.54 Aligned_cols=74 Identities=22% Similarity=0.225 Sum_probs=59.2
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-HhH
Q 046417 181 PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DLA 254 (595)
Q Consensus 181 ~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~f 254 (595)
.-+..+|+-.--.+-..++..+++++...|....+++..++..|.+.-.+++...|+.+=+|+|+...++| +.|
T Consensus 3 ~~~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~v 77 (198)
T PF08161_consen 3 ATLESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQV 77 (198)
T ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHH
Confidence 34455664444446688899999999988777778888888888888888889999999999999999988 443
No 247
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=66.30 E-value=8.6 Score=27.15 Aligned_cols=28 Identities=36% Similarity=0.392 Sum_probs=24.4
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 046417 220 LVPCLVEFLCCDDWATRKAAAEVLGKVA 247 (595)
Q Consensus 220 lmp~L~e~L~~dDW~~RkaAaEaLgsIA 247 (595)
.+|.|.+++.++++.+++.|+.+|+.|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677888888889999999999999886
No 248
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=65.93 E-value=16 Score=32.19 Aligned_cols=86 Identities=20% Similarity=0.249 Sum_probs=65.4
Q ss_pred HHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh---HHHHHHHHHhhccCCChhHHH
Q 046417 40 TAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH---LSKMISTVSCRLRDPDSSVRS 116 (595)
Q Consensus 40 ~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph---LpkIL~~IvrrLkD~ds~VR~ 116 (595)
...++..+..||...+..+|..|.+.....++..=+..++-+-.+...|+..+... +-..+..+.+.++.--..++.
T Consensus 15 ~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~~~~~l~~ 94 (110)
T PF04003_consen 15 PSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRERLQNLSK 94 (110)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999998899999999986654567778888999999999999777444 666666666666655555666
Q ss_pred HHHHHHHHh
Q 046417 117 ACVAATTAM 125 (595)
Q Consensus 117 Ac~~aLg~L 125 (595)
.|..-+|+|
T Consensus 95 l~~~n~~~L 103 (110)
T PF04003_consen 95 LLDLNLGRL 103 (110)
T ss_pred HHHHhHHHH
Confidence 666555554
No 249
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.00 E-value=2.2e+02 Score=34.41 Aligned_cols=171 Identities=16% Similarity=0.194 Sum_probs=95.0
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccchhhHHH
Q 046417 20 KQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSLSPHLSK 98 (595)
Q Consensus 20 k~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I~PhLpk 98 (595)
.++.++++.|.+|..-.-+-+.-|-.+. ......+.-+.--+....++++-.+|+-++...=-+++.|- +-|..+|.+
T Consensus 281 a~~~i~l~~kesdnnvklIvldrl~~l~-~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkk 359 (948)
T KOG1058|consen 281 ASTYIDLLVKESDNNVKLIVLDRLSELK-ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKK 359 (948)
T ss_pred HHHHHHHHHhccCcchhhhhHHHHHHHh-hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHH
Confidence 4677888888888876666555554444 12222244333333334566778899999887777777774 433333333
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHH
Q 046417 99 MISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRK 178 (595)
Q Consensus 99 IL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~ 178 (595)
=+.--...=+|..-.-|+.-..++...|-...+- ....+.-|++.| +|.|.....+...=+..++|-.+..-.-++.+
T Consensus 360 e~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~-aatvV~~ll~fi-sD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~ 437 (948)
T KOG1058|consen 360 EVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV-AATVVSLLLDFI-SDSNEAAASDVLMFVREAIEKFPNLRASIIEK 437 (948)
T ss_pred HHHhccccccccchHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 2222222212233446999999998888766321 012555567777 66664322222222444555444444456677
Q ss_pred HHHHHHHhhccCchh
Q 046417 179 LLPRLGKAVRIEGFK 193 (595)
Q Consensus 179 Ll~rL~klL~~~~~k 193 (595)
|+.-|-+.-....|.
T Consensus 438 l~~~~~~irS~ki~r 452 (948)
T KOG1058|consen 438 LLETFPQIRSSKICR 452 (948)
T ss_pred HHHhhhhhcccccch
Confidence 776666665555554
No 250
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=63.93 E-value=15 Score=35.13 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=40.8
Q ss_pred HHHHHHHhhcc--CCChhHHHHHHHHHHHhhhhh-cCCcch-hccHHHHHHHhh-cCChh-HHHHHHHHHHH
Q 046417 98 KMISTVSCRLR--DPDSSVRSACVAATTAMSLNI-TKPSFS-VLSKPLIELILV-EQDVN-SQVGGAMCLAA 163 (595)
Q Consensus 98 kIL~~IvrrLk--D~ds~VR~Ac~~aLg~LA~~l-~~~~~~-~~l~PLi~aLl~-d~nk~-VQ~~AA~cLaa 163 (595)
.+++.++.... -.+..+..++++.+..=+..- ++ .++ ....++++.+.. ..+.. ++..|+.+|.+
T Consensus 86 g~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 86 GFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp THHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 45556666655 556678889988876655321 11 122 367778888863 45556 88999998876
No 251
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=63.47 E-value=44 Score=31.86 Aligned_cols=93 Identities=18% Similarity=0.214 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHhCCc-----CcHHHHHHh--------hhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHH
Q 046417 35 TLPVATAELESIARTLTQ-----DSFSSFLNC--------LQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMIS 101 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~-----~~lp~fL~~--------L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~ 101 (595)
+...|++.|..+-++-++ +..+.|+.. |.....+..+.+=..+++.+..+...+...+..+++-+++
T Consensus 38 ~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~ 117 (168)
T PF12783_consen 38 SKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLS 117 (168)
T ss_pred HHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777666542 111233333 3333344447777789999999999999999999999999
Q ss_pred HHHhhccCCCh---hHHHHHHHHHHHhhh
Q 046417 102 TVSCRLRDPDS---SVRSACVAATTAMSL 127 (595)
Q Consensus 102 ~IvrrLkD~ds---~VR~Ac~~aLg~LA~ 127 (595)
.++.++-+++. .-|..+.+++..++.
T Consensus 118 ~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 118 HIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 99997666543 357788888877775
No 252
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.28 E-value=2.4e+02 Score=31.17 Aligned_cols=178 Identities=16% Similarity=0.239 Sum_probs=107.0
Q ss_pred HHHhhhc----CCCChHHHHHHHHHHHHHh------CC-cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc--c
Q 046417 24 ITCLNKL----ADRDTLPVATAELESIART------LT-QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG--D 90 (595)
Q Consensus 24 l~~L~KL----~DrDT~r~A~~~LD~lA~~------L~-~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g--d 90 (595)
+..|++. -|.|....+...|..||-. +. ...|..++.||.+.....+-..-|.|+.+|-.+|-.-. +
T Consensus 243 l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs 322 (461)
T KOG4199|consen 243 LTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKS 322 (461)
T ss_pred HHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHH
Confidence 4444443 3788777777777777653 32 34499999999987654444455778888777765432 3
Q ss_pred cch--hhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc--ch-h-ccHHHHHHHhhc-CChhHHHHHHHHHHH
Q 046417 91 SLS--PHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS--FS-V-LSKPLIELILVE-QDVNSQVGGAMCLAA 163 (595)
Q Consensus 91 ~I~--PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~--~~-~-~l~PLi~aLl~d-~nk~VQ~~AA~cLaa 163 (595)
.|. .-+++|+....+-+. +|.|-++.+-.+..|+-...+-. ++ . .-.-.+++|-.. +.+.||--||..+..
T Consensus 323 ~IV~~gg~~~ii~l~~~h~~--~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRN 400 (461)
T KOG4199|consen 323 TIVEKGGLDKIITLALRHSD--DPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRN 400 (461)
T ss_pred HHHHhcChHHHHHHHHHcCC--ChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 442 237788888777774 45566666556565553332110 00 0 223456666333 345689999999888
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 046417 164 AIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIG 203 (595)
Q Consensus 164 viE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIg 203 (595)
++-.....-.++|..=.+.|+..-+.++.-|..++-+|++
T Consensus 401 iv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALR 440 (461)
T KOG4199|consen 401 IVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALR 440 (461)
T ss_pred HHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHH
Confidence 8765433333455444556665566666666666555555
No 253
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.16 E-value=1.4e+02 Score=33.30 Aligned_cols=123 Identities=12% Similarity=0.134 Sum_probs=91.7
Q ss_pred ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHh-hcccCcC
Q 046417 137 LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRV-GGARSKG 215 (595)
Q Consensus 137 ~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a-~g~~~~~ 215 (595)
.++=|+.-| +.-|..|-..|-.-|...+-+-+......+..|++.+..++-+..+.+|..++.++-.++.. +.+...+
T Consensus 59 tlkeLl~ql-kHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQL-KHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhh-cCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 455556566 56666677677776666665533333446677888888888888999999999888876653 3333568
Q ss_pred cHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 046417 216 VLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRS 260 (595)
Q Consensus 216 yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~ 260 (595)
.+..+|+++.-.+++--=..|.-++-.|..++..+++.|.-+...
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~ 182 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK 182 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH
Confidence 889999999999998877889999999999999998776666543
No 254
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=63.14 E-value=8.6 Score=33.92 Aligned_cols=57 Identities=19% Similarity=0.178 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417 234 ATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 234 ~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~ 291 (595)
..|-+++..|+++..+..-.+.++++.+|..|.++-.| ..+||.++.++|+-+|..-
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhC
Confidence 45778899999998888777888999999999999997 8999999999999998755
No 255
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=63.02 E-value=1.3e+02 Score=28.00 Aligned_cols=125 Identities=8% Similarity=0.095 Sum_probs=73.6
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH--
Q 046417 19 LKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-- 96 (595)
Q Consensus 19 lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-- 96 (595)
+..-|-.+-+..-..+-....++-.|.+-.. +..-...+..|...+.+.+|.+.-.|+.+|..++.-||..+...+
T Consensus 6 ~~~li~kATs~~~~~~Dw~~~l~icD~i~~~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~ 83 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDWSLILEICDLINSS--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVAS 83 (140)
T ss_dssp HHHHHHHHT-TTSSS--HHHHHHHHHHHHTS--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS
T ss_pred HHHHHHHHhCcCCCCCCHHHHHHHHHHHHcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhH
Confidence 4444444444432222223344555655554 333445566666666667899999999999999999986654433
Q ss_pred HHHHHHHHhhccCCCh----hHHHHHHHHHHHhhhhhcCCcchhccHHHHHHH
Q 046417 97 SKMISTVSCRLRDPDS----SVRSACVAATTAMSLNITKPSFSVLSKPLIELI 145 (595)
Q Consensus 97 pkIL~~IvrrLkD~ds----~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aL 145 (595)
.+++..+.+.+.++.. .||+-+...|...+..+...+...++.-+...|
T Consensus 84 ~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~~L 136 (140)
T PF00790_consen 84 KEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLIQDTYKRL 136 (140)
T ss_dssp HHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHHHH
Confidence 2345555555554322 289999888888888774434333444444443
No 256
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=62.93 E-value=14 Score=32.90 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=48.1
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcccc-chhhHHHHHHHHHhhccCC
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDS-LSPHLSKMISTVSCRLRDP 110 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~-I~PhLpkIL~~IvrrLkD~ 110 (595)
++.++.++.....+-.+.+|..+++.|..+-+.||+. +..+..+|++.++..|.-.
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 5677777777778888999999999999999999988 6778999999888877655
No 257
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=62.87 E-value=1.7e+02 Score=29.30 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc
Q 046417 155 VGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG 210 (595)
Q Consensus 155 ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g 210 (595)
.-....++++.+..+..-.+++.+++..+.++-+++.|..|..+=.+||+.+.+.|
T Consensus 18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amG 73 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMG 73 (198)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCC
Confidence 33444455666665544457999999999999999999999999999999988765
No 258
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=61.48 E-value=15 Score=34.20 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCc--HH--HHHHhhhhcCCCCChHHHHHHHHHHHHHH
Q 046417 16 TNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDS--FS--SFLNCLQTTDSSSKSPVRKQCVNLLTLLS 85 (595)
Q Consensus 16 ~~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~--lp--~fL~~L~d~~ss~kp~vRKaaI~lLG~lA 85 (595)
.-++-++++++|.+-.|..+..+|...|-.+++.+|... +. -.=..|-+-..++++.+|++|+.++..+.
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 456778888888776677799999999999999997422 11 01122223345678999999999987654
No 259
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=61.23 E-value=10 Score=33.34 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHH
Q 046417 230 CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKI 275 (595)
Q Consensus 230 ~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~ 275 (595)
+++|.+|.-|+..|+.|....++......+.+++.|...-.|.-++
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~ 62 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKP 62 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCC
Confidence 5799999999999999999988766656667777777666676653
No 260
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=60.66 E-value=2.6e+02 Score=30.79 Aligned_cols=72 Identities=13% Similarity=0.254 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHHHHHHHc--cccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch---hccHHHHHH
Q 046417 70 KSPVRKQCVNLLTLLSRSH--GDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS---VLSKPLIEL 144 (595)
Q Consensus 70 kp~vRKaaI~lLG~lAEg~--gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~---~~l~PLi~a 144 (595)
.-..|++|++++=.+.+.. .+.+. .-++..|+.-..+++-..|.+|..+|..++-.- +... .-+++|+.+
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~~~---~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKEIP---RGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRA 155 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcccCC---HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHH
Confidence 3589999999999999884 34433 367778888888899999999999988887432 1111 156888888
Q ss_pred Hh
Q 046417 145 IL 146 (595)
Q Consensus 145 Ll 146 (595)
+.
T Consensus 156 l~ 157 (371)
T PF14664_consen 156 LI 157 (371)
T ss_pred HH
Confidence 85
No 261
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.95 E-value=29 Score=42.26 Aligned_cols=94 Identities=12% Similarity=0.051 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC-----cch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC
Q 046417 96 LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP-----SFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP 169 (595)
Q Consensus 96 LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~-----~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~ 169 (595)
+.+|+...+..|.+++-.+|-++.+.|.--...+.+. |.+ .+++++++.+ .+.|+-+-..|+.|+..+++-++
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~-~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECL-LCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHH-hcCchHHHHHHHHHHHHHHHHhh
Confidence 5678888889999999999999998876555555432 333 3888999998 57788888899999999999999
Q ss_pred CchH-HHHHHHHHHHHHhhccC
Q 046417 170 NPEV-EQLRKLLPRLGKAVRIE 190 (595)
Q Consensus 170 d~~~-~~L~~Ll~rL~klL~~~ 190 (595)
+.+. -.++.++|++-.++...
T Consensus 880 DFv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 9885 47778889988777543
No 262
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=58.80 E-value=1.7e+02 Score=27.78 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=34.7
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc
Q 046417 22 RVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG 89 (595)
Q Consensus 22 rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g 89 (595)
++...++||++ +.....+.+|..+.... ++....++..|.+.... .|..-.....+++.+....+
T Consensus 3 ~v~~~lnkLs~-~n~~~~~~~l~~~~~~~-~~~~~~l~~~i~~~~~~-~~~~~~~ya~L~~~l~~~~~ 67 (200)
T smart00543 3 KVKGLINKLSP-SNFESIIKELLKLNNSD-KNLRKYILELIFEKAVE-EPNFIPAYARLCALLNAKNP 67 (200)
T ss_pred HHHHHHhhCCH-HHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHc-CcchHHHHHHHHHHHHHHHH
Confidence 57788999985 44445555555554332 34577777777665322 23333333444444444333
No 263
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=58.60 E-value=1.5e+02 Score=31.76 Aligned_cols=93 Identities=9% Similarity=0.140 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhCCcCcHHHHHHhhh----hcC---CCCChHHHHHHHHHHHHHHHHccccch----hhHHHHHHHHHhh
Q 046417 38 VATAELESIARTLTQDSFSSFLNCLQ----TTD---SSSKSPVRKQCVNLLTLLSRSHGDSLS----PHLSKMISTVSCR 106 (595)
Q Consensus 38 ~A~~~LD~lA~~L~~~~lp~fL~~L~----d~~---ss~kp~vRKaaI~lLG~lAEg~gd~I~----PhLpkIL~~Ivrr 106 (595)
+.+.-+..+...+. +.++.++..+. +.. -..-|..|.+-..+|..+.+.|.+.+. .++..++-+|+-.
T Consensus 95 l~~~ii~kl~~~~~-~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg 173 (319)
T PF08767_consen 95 LMATIINKLGELIQ-PQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWG 173 (319)
T ss_dssp HHHHHHHHHGGGCC-CCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444444444443 34454444443 322 223489999999999999999987663 3578899999999
Q ss_pred ccCCChhHHHHHHHHHHHhhhhhcC
Q 046417 107 LRDPDSSVRSACVAATTAMSLNITK 131 (595)
Q Consensus 107 LkD~ds~VR~Ac~~aLg~LA~~l~~ 131 (595)
+++++..|-+.|+.+|..|...+..
T Consensus 174 ~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 174 FKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987754
No 264
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=57.78 E-value=3.8e+02 Score=34.86 Aligned_cols=216 Identities=17% Similarity=0.183 Sum_probs=111.3
Q ss_pred cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc-cCCChhHHHHHHHHHHHhhhhhc
Q 046417 52 QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL-RDPDSSVRSACVAATTAMSLNIT 130 (595)
Q Consensus 52 ~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL-kD~ds~VR~Ac~~aLg~LA~~l~ 130 (595)
.+.++.||........+.++.++..+..+|-.+=..+..+.. .+|+..|+.-+ ...+..| .+|.++|-.|+....
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~q---qeVv~~Lvthi~sg~~~ev-~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQ---QEVVGALVTHIGSGNSQEV-DAALDVLCELAEKNP 505 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHH---HHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhH---HHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHhccH
Confidence 456888888888777888999999999999999888855433 24555554444 2344456 688999988886432
Q ss_pred C--CcchhccHHHHHHHhhcCChhHHHHHHHH---HHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH
Q 046417 131 K--PSFSVLSKPLIELILVEQDVNSQVGGAMC---LAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSV 205 (595)
Q Consensus 131 ~--~~~~~~l~PLi~aLl~d~nk~VQ~~AA~c---LaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSl 205 (595)
+ .++..+++.+++.| . .---.|+.-.+. .-++-+.. ....+-.+|---+-|.|.+...+.|- ++.||++
T Consensus 506 ~~l~~fa~~l~giLD~l-~-~Ls~~qiR~lf~il~~La~~~~~--~~s~i~del~ivIRKQLss~~~~~K~--~GIIGav 579 (1426)
T PF14631_consen 506 SELQPFATFLKGILDYL-D-NLSLQQIRKLFDILCTLAFSDSS--SSSSIQDELHIVIRKQLSSSNPKYKR--IGIIGAV 579 (1426)
T ss_dssp HHHHHTHHHHHGGGGGG-G-G--HHHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHT-SSHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHHHhcCCcc--cchhhHHHHHHHHHHhhcCCcHHHHH--HhHHHHH
Confidence 1 13334777777777 2 222234443332 22222211 11123345666666788888777663 4445544
Q ss_pred HHhhcccCcCc-HHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH---HhHHHHHHHHHHHHHhccCCch--HHHHHH
Q 046417 206 VRVGGARSKGV-LDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK---DLATEYKRSCLAALETRRFDKV--KIVRET 279 (595)
Q Consensus 206 A~a~g~~~~~y-l~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg---e~f~py~~~~I~~Le~crfDKV--K~VRda 279 (595)
..+...+-... .+... .+.-.-++ ..++.+...|..+-...+ +..+=|-.+.-.++...++|+- ..+-+.
T Consensus 580 ~~i~~la~~~~~~~~~~---~~~~~l~~-~~~~q~~~Ll~l~~ss~~~sp~~~ALfYDELA~li~~~~l~~~~~~wi~~~ 655 (1426)
T PF14631_consen 580 MMIKHLAAKNSESDSSS---SERSNLSD-EQCKQATSLLELVQSSSEQSPEALALFYDELANLIQSRKLDPKFLEWIGEH 655 (1426)
T ss_dssp HHHHHTT----------------------HHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHS---HHHHHHHHHH
T ss_pred HHHHHHHHHhccCCccc---cccccCCH-HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 43321110000 01000 00000011 234555556655544443 4555566666667777777765 555555
Q ss_pred HH
Q 046417 280 MN 281 (595)
Q Consensus 280 ~~ 281 (595)
+.
T Consensus 656 i~ 657 (1426)
T PF14631_consen 656 IT 657 (1426)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 265
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.46 E-value=3.5e+02 Score=35.23 Aligned_cols=152 Identities=16% Similarity=0.102 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHHhCC-cCcHHHHHHhhh-hcCCCCChHHHHHHHHHHHHHH--HHccccchhhHHHHHHHHHhhccCC
Q 046417 35 TLPVATAELESIARTLT-QDSFSSFLNCLQ-TTDSSSKSPVRKQCVNLLTLLS--RSHGDSLSPHLSKMISTVSCRLRDP 110 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~-~~~lp~fL~~L~-d~~ss~kp~vRKaaI~lLG~lA--Eg~gd~I~PhLpkIL~~IvrrLkD~ 110 (595)
+..+|+.+.+.++.++. +...+.|+..+. ....+..|.+|-+.+.-+-.+. ..++ .--.+..+|--.+.+.|.|.
T Consensus 1503 a~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~ 1581 (1710)
T KOG1851|consen 1503 AKNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDD 1581 (1710)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcch
Confidence 78889999999999886 445888888887 3344556899998776654433 3333 33556778888999999999
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCcchh-ccHHHHHHHhhcCChhHH-HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhc
Q 046417 111 DSSVRSACVAATTAMSLNITKPSFSV-LSKPLIELILVEQDVNSQ-VGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVR 188 (595)
Q Consensus 111 ds~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~aLl~d~nk~VQ-~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~ 188 (595)
+-.||.-++.+|+-|-..-- ..+.. --++....+.......++ -||+++|.+++=+.|..+...+++.+-.+....+
T Consensus 1582 ~i~vre~Aa~~Lsgl~~~s~-~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~ 1660 (1710)
T KOG1851|consen 1582 QIEVREEAAKCLSGLLQGSK-FQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFAR 1660 (1710)
T ss_pred HHHHHHHHHHHHHHHHhccc-cccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcC
Confidence 99999999988877764321 00000 122333333222222233 4777888888877766554455554444444433
No 266
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.03 E-value=3e+02 Score=33.51 Aligned_cols=192 Identities=12% Similarity=0.048 Sum_probs=122.8
Q ss_pred HHHHHHHhhccCCCh-hHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhc---C-----
Q 046417 98 KMISTVSCRLRDPDS-SVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDA---A----- 168 (595)
Q Consensus 98 kIL~~IvrrLkD~ds-~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~---a----- 168 (595)
+-|+.++.|+....- .=|.+||.+|-.+|+.+-......-++||+..|-.|.+-. ...-++|+.++-- .
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~--E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDP--EIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCH--HHHHHHHHHHHHHHhcCcchhh
Confidence 445566666655433 3488999999999987732111237899999996554322 2233344544311 1
Q ss_pred -CCc-----hHHHH-------HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhccc---CcCcHHhHHHHHHHhccCCC
Q 046417 169 -PNP-----EVEQL-------RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR---SKGVLDWLVPCLVEFLCCDD 232 (595)
Q Consensus 169 -~d~-----~~~~L-------~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~---~~~yl~~lmp~L~e~L~~dD 232 (595)
.+. ....+ +..+.-++.++...+|++|...|..|.++...-+.. -.-.++..+..|...|.|.-
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence 111 11111 246677778888999999999999999887643321 11223556777788888877
Q ss_pred HHHHHHHHHHHHHHHHHhHH-----hHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHhHhcC
Q 046417 233 WATRKAAAEVLGKVAVFDKD-----LATEYKRSCLAALETRR-FDKVKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 233 W~~RkaAaEaLgsIA~avge-----~f~py~~~~I~~Le~cr-fDKVK~VRda~~~aL~~~K~i~ 291 (595)
=..|-.|+-.|..+....+. .|..-....+.++++-- .|-=-.|-|.+.-.+.++|.-.
T Consensus 180 E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 180 EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 78999999999999876542 23333455566655443 6776688888888888888644
No 267
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.03 E-value=2.7e+02 Score=34.95 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=70.2
Q ss_pred ChHHHHHHHHHHHHHHHHccccch-hhHHHHHHHHHhhccC-CChhHHHHHHHHHHHhhhhhcCCcch----hccHHHHH
Q 046417 70 KSPVRKQCVNLLTLLSRSHGDSLS-PHLSKMISTVSCRLRD-PDSSVRSACVAATTAMSLNITKPSFS----VLSKPLIE 143 (595)
Q Consensus 70 kp~vRKaaI~lLG~lAEg~gd~I~-PhLpkIL~~IvrrLkD-~ds~VR~Ac~~aLg~LA~~l~~~~~~----~~l~PLi~ 143 (595)
.+.+|--+.-.|++++.++.-.=. -.=..+|...+.-|.| +++.+|+=+|-.||+|=+........ ....-|+.
T Consensus 570 ~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 570 PPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred CHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 358888888899999999852211 1113567778888999 58999999999999997655321110 13444565
Q ss_pred HHhhcCChhHHHHHHHHHHHHHhcC
Q 046417 144 LILVEQDVNSQVGGAMCLAAAIDAA 168 (595)
Q Consensus 144 aLl~d~nk~VQ~~AA~cLaaviE~a 168 (595)
.| .|.-+.|-.+|..||..++.+.
T Consensus 650 ~L-sD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 650 LL-SDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred Hh-cCccHHHHHHHHHHHHHHhccc
Confidence 66 6778889999999999999874
No 268
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=54.54 E-value=4.7e+02 Score=31.68 Aligned_cols=109 Identities=21% Similarity=0.208 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh---cc---cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417 175 QLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG---GA---RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAV 248 (595)
Q Consensus 175 ~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~---g~---~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~ 248 (595)
+.-+=+..+.++|++.+|-.|.+.+.+.+.++.-- ++ ..++-+..+|..|.+.+.|..--+|--|+..+..|-.
T Consensus 296 i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifd 375 (1128)
T COG5098 296 IMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFD 375 (1128)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHh
Confidence 44455688999999999999999999998887522 11 1233456788888888889998999999988888754
Q ss_pred HhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 046417 249 FDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSL 284 (595)
Q Consensus 249 avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL 284 (595)
-- ..+..-...+++..-+|-.||-.+||..++.-+
T Consensus 376 l~-sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~ 410 (1128)
T COG5098 376 LN-SKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLC 410 (1128)
T ss_pred Cc-ccccchHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 22 112223344555556666699999998766543
No 269
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=54.27 E-value=76 Score=29.37 Aligned_cols=76 Identities=14% Similarity=-0.010 Sum_probs=54.8
Q ss_pred HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHH-HHH-HHHHHHHhccCC--ch-HHHHHHHHHHHHHhHhcCC
Q 046417 218 DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATE-YKR-SCLAALETRRFD--KV-KIVRETMNRSLEMWKEVPG 292 (595)
Q Consensus 218 ~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~p-y~~-~~I~~Le~crfD--KV-K~VRda~~~aL~~~K~i~~ 292 (595)
..++..|...|.+.+=.+...|+..|-.+...+|..|.. +.. .++.-|...-.+ ++ ..||+-+.+.|+.|..-..
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 456777888888888788888999999999999875433 332 333333333333 34 6899999999999998765
Q ss_pred C
Q 046417 293 V 293 (595)
Q Consensus 293 ~ 293 (595)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 5
No 270
>PRK14707 hypothetical protein; Provisional
Probab=54.04 E-value=4.1e+02 Score=35.95 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=83.4
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHH-------HHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc---ccc
Q 046417 23 VITCLNKLADRDTLPVATAELESI-------ARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG---DSL 92 (595)
Q Consensus 23 vl~~L~KL~DrDT~r~A~~~LD~l-------A~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g---d~I 92 (595)
++..|.|=.|.+..+.|+..|... ...|....|..+++.|. ||+.+.+|..++..||.-.. +..
T Consensus 546 ~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLS------KWP~~~aC~~Aa~~LA~~l~~~~~lr 619 (2710)
T PRK14707 546 TLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALS------KWPDTAVCAEAVNALAERLVDEPDLR 619 (2710)
T ss_pred HHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhc------cCCCcHHHHHHHHHHHHHhccChhhh
Confidence 456677777888888888777654 22344444666666665 57778888888888888773 222
Q ss_pred hhhHHHHHHHHHhhc-cCCChhHHHHHHHHHHHhhhhhcCCc-----ch-hccHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046417 93 SPHLSKMISTVSCRL-RDPDSSVRSACVAATTAMSLNITKPS-----FS-VLSKPLIELILVEQDVNSQVGGAMCLAAAI 165 (595)
Q Consensus 93 ~PhLpkIL~~IvrrL-kD~ds~VR~Ac~~aLg~LA~~l~~~~-----~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaavi 165 (595)
..+-++=+..+++.| |-|+. .+|..+..+|+.++.... +- .-+-.++.+|-.=.+..+=..|+.+|+..+
T Consensus 620 ~~l~~q~lan~lNALSKWP~s---~~C~~Aa~rLA~rl~~~~~l~~~fnaQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rL 696 (2710)
T PRK14707 620 KELDPVDVTNVLNALSKWPGT---EVCAEVARLLAGRLVGDRLLRKTFNSLDVANALNALSKWPDTPVCAAAAGGMAERL 696 (2710)
T ss_pred hhccHHHHHHHHhhhhcCCCc---hHHHHHHHHHHHHhhhchhhHhhcchHHHHHHHHhhhcCCCchHHHHHHHHHHHHH
Confidence 333345566666665 33444 578888899988875422 11 145667777732233334445666676665
Q ss_pred hc
Q 046417 166 DA 167 (595)
Q Consensus 166 E~ 167 (595)
..
T Consensus 697 a~ 698 (2710)
T PRK14707 697 AA 698 (2710)
T ss_pred hc
Confidence 54
No 271
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=54.02 E-value=1.8e+02 Score=29.71 Aligned_cols=146 Identities=15% Similarity=0.178 Sum_probs=79.0
Q ss_pred CCChHHHHHHHHHHHHHHHHcc---------ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhcc
Q 046417 68 SSKSPVRKQCVNLLTLLSRSHG---------DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLS 138 (595)
Q Consensus 68 s~kp~vRKaaI~lLG~lAEg~g---------d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l 138 (595)
++++.+-|.+|.+++.+=...= +.++..+..|=..|+..+.+..+.||-+|.+=+-.+.-.....+.
T Consensus 4 d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~---- 79 (239)
T PF11935_consen 4 DEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSS---- 79 (239)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---T----
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCC----
Confidence 3467777888877766554432 334555677777888888888999999998766555543322110
Q ss_pred HHHHHHHhhcCCh-hHHHHHHHHHHHHHhcCCCchHHHH----HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccC
Q 046417 139 KPLIELILVEQDV-NSQVGGAMCLAAAIDAAPNPEVEQL----RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS 213 (595)
Q Consensus 139 ~PLi~aLl~d~nk-~VQ~~AA~cLaaviE~a~d~~~~~L----~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~ 213 (595)
+..+ ..+.. -..|+.+=.+-+-.-...| ..++.+|+..|..+.. .-..+..+|.+++..+..-
T Consensus 80 ---------~~~~~~~~~~-d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i-~~~~~~a~insL~~Iak~R- 147 (239)
T PF11935_consen 80 ---------DSPPRRGSPN-DFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHI-SSPLLTAIINSLSNIAKQR- 147 (239)
T ss_dssp ---------TS---GGGTT-S--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT---HHHHHHHHHHHHHHHHHS-
T ss_pred ---------CCcccccccc-CCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHHHh-
Confidence 0000 00000 0011111111000001122 2588888888877762 2234446666666655543
Q ss_pred cCcHHhHHHHHHHhcc
Q 046417 214 KGVLDWLVPCLVEFLC 229 (595)
Q Consensus 214 ~~yl~~lmp~L~e~L~ 229 (595)
+.|+..+++.|..+-.
T Consensus 148 P~~~~~Il~~ll~~~~ 163 (239)
T PF11935_consen 148 PQFMSRILPALLSFNP 163 (239)
T ss_dssp GGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCc
Confidence 6888889999988854
No 272
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=53.77 E-value=1.9e+02 Score=26.88 Aligned_cols=107 Identities=9% Similarity=0.076 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH--HHHHHHHHhhccCCCh--
Q 046417 37 PVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL--SKMISTVSCRLRDPDS-- 112 (595)
Q Consensus 37 r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL--pkIL~~IvrrLkD~ds-- 112 (595)
...++-.|.+-.. +..-...+.+|...+.+.+|.+--.++.+|..++.-||..+.-++ .+.+..+++.+.++..
T Consensus 19 ~~~l~icD~i~~~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~ 96 (133)
T smart00288 19 ELILEICDLINST--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLP 96 (133)
T ss_pred HHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcH
Confidence 3445555666544 233444555566666667899999999999999999997654333 2356666666666543
Q ss_pred hHHHHHHHHHHHhhhhhcCCcchhccHHHHHHH
Q 046417 113 SVRSACVAATTAMSLNITKPSFSVLSKPLIELI 145 (595)
Q Consensus 113 ~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aL 145 (595)
.|+.-+...+...+..+...+....+..+...|
T Consensus 97 ~Vk~kil~li~~W~~~f~~~~~~~~i~~~y~~L 129 (133)
T smart00288 97 LVKKRILELIQEWADAFKNDPDLSQIVDVYDLL 129 (133)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 499999988888888775433322334444433
No 273
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=53.16 E-value=25 Score=26.46 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=23.4
Q ss_pred HhHHHHHHHhccCCCHHHHHHHHHHH
Q 046417 218 DWLVPCLVEFLCCDDWATRKAAAEVL 243 (595)
Q Consensus 218 ~~lmp~L~e~L~~dDW~~RkaAaEaL 243 (595)
+.++..+...+.|++..+|++|.+.|
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 57889999999999999999999874
No 274
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=53.02 E-value=71 Score=31.13 Aligned_cols=78 Identities=15% Similarity=0.094 Sum_probs=49.9
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH
Q 046417 97 SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL 176 (595)
Q Consensus 97 pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L 176 (595)
+.+.+.+.+-+++.+.-+|.+++.++..+... .....+..++..++++.+..||.+.+-+|..+.-.-++...++|
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l 194 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFL 194 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 56777888888999999998887665333332 11123333444444678889999999999887765444344555
Q ss_pred HH
Q 046417 177 RK 178 (595)
Q Consensus 177 ~~ 178 (595)
.+
T Consensus 195 ~~ 196 (213)
T PF08713_consen 195 QK 196 (213)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 275
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.99 E-value=2.4e+02 Score=36.02 Aligned_cols=202 Identities=17% Similarity=0.106 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhH
Q 046417 35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSV 114 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~V 114 (595)
-.+.|-..+..+|.++.+..-..|..++....+ .....+...-.++-.+-+..++ .|--++|++..-|.-.+-.+
T Consensus 201 a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s-~~~~~~~~~he~i~~L~~~~p~----ll~~vip~l~~eL~se~~~~ 275 (1266)
T KOG1525|consen 201 ADKLASDLIERCADNLEDTIANFLNSCLTEYKS-RQSSLKIKYHELILELWRIAPQ----LLLAVIPQLEFELLSEQEEV 275 (1266)
T ss_pred HHHHHHHHHHHhhhhhchhHHHHHHHHHhhccc-cccchhhHHHHHHHHHHHhhHH----HHHHHHHHHHHHHhcchHHH
Confidence 455677778888888877667778888877653 2233333333333344443333 35668888888999899999
Q ss_pred HHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh---cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc
Q 046417 115 RSACVAATTAMSLNITKPSFSVLSKPLIELILV---EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG 191 (595)
Q Consensus 115 R~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~---d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~ 191 (595)
|--+...+|+|-..-...-+ .-..|++.+.++ |....|-....-+.--.+-+-+..... ..++.++-...-++.
T Consensus 276 Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~--~~~~~~l~~~~~D~~ 352 (1266)
T KOG1525|consen 276 RLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA--STILLALRERDLDED 352 (1266)
T ss_pred HHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH--HHHHHHHHhhcCChh
Confidence 99999999998754321111 124566666554 444333322222222222221111100 011122211111112
Q ss_pred hhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417 192 FKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAV 248 (595)
Q Consensus 192 ~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~ 248 (595)
..++..++-.+. .+.. ....|.+.+|..+.+.+.|.-|.+|+-|+.-|..|=.
T Consensus 353 ~rir~~v~i~~~---~v~~-~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 353 VRVRTQVVIVAC---DVMK-FKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hhheeeEEEEEe---ehhH-hhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 111111110000 0111 1133444477788888889999999999999988855
No 276
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=52.40 E-value=13 Score=36.25 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=47.6
Q ss_pred HHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh
Q 046417 59 LNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI 129 (595)
Q Consensus 59 L~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l 129 (595)
.+.+..-..++++-.|+.++.++--.... .+++.++..+...+.|++.-||.|..|+|..++..-
T Consensus 122 ~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 122 LELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 44444445567788888887765322222 778899999999999999999999999999888653
No 277
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=52.27 E-value=12 Score=25.36 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhhhhcCCcchhccHHHHHHH
Q 046417 114 VRSACVAATTAMSLNITKPSFSVLSKPLIELI 145 (595)
Q Consensus 114 VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aL 145 (595)
||.+++++||++...- .+.+|+++|
T Consensus 1 VR~~Aa~aLg~igd~~-------ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGDPR-------AIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-SHH-------HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHH-------HHHHHHHHh
Confidence 7999999999998722 467777777
No 278
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=51.26 E-value=4e+02 Score=29.97 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhhhhcCCcchhccHH-HHHHHhhcCChhHHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHhhccC-
Q 046417 114 VRSACVAATTAMSLNITKPSFSVLSKP-LIELILVEQDVNSQVGGAMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVRIE- 190 (595)
Q Consensus 114 VR~Ac~~aLg~LA~~l~~~~~~~~l~P-Li~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~~~- 190 (595)
-|-+|+.+||.+..++.+.....++.| |+..| ....-..+..||+-|........... .+..+.+.++|...|..+
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~~ 181 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSLQEIFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENPE 181 (441)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCCC
Confidence 389999999999999865443347777 55555 55555567788887777666532211 111466777888877622
Q ss_pred -chh---------HHHHHHHHHHHHHHhhc
Q 046417 191 -GFK---------AKAAVLGVIGSVVRVGG 210 (595)
Q Consensus 191 -~~k---------aK~alLsAIgSlA~a~g 210 (595)
.+. ++...-..+.++...|.
T Consensus 182 ~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 182 PPYYDELVPSLKRLRTECQQLLATFRDVGK 211 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 211 34444456666665554
No 279
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=51.12 E-value=1.8e+02 Score=26.40 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=63.9
Q ss_pred HHhhccCchhHHHHHHHHHHHHHHhhcccCc-CcHHhHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHhHHhHHHHH-
Q 046417 184 GKAVRIEGFKAKAAVLGVIGSVVRVGGARSK-GVLDWLVPCLVEFL---CCDDWATRKAAAEVLGKVAVFDKDLATEYK- 258 (595)
Q Consensus 184 ~klL~~~~~kaK~alLsAIgSlA~a~g~~~~-~yl~~lmp~L~e~L---~~dDW~~RkaAaEaLgsIA~avge~f~py~- 258 (595)
-++-+++...+...++.-|+... |. ..+..+|..|...| ....|..-.=|+-.|-.+.....+.|...+
T Consensus 9 ~eAT~~d~~gp~~~~l~eIa~~t------~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~ 82 (125)
T PF01417_consen 9 REATSNDPWGPPGKLLAEIAQLT------YNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELR 82 (125)
T ss_dssp HHHTSSSSSS--HHHHHHHHHHT------TSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHcCCCCCCcCHHHHHHHHHHH------hccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 34555555555555555554322 21 33567888898888 567999999999999999887665444443
Q ss_pred --HHHHHHHHhccC------CchHHHHHHHHHHHHHhH
Q 046417 259 --RSCLAALETRRF------DKVKIVRETMNRSLEMWK 288 (595)
Q Consensus 259 --~~~I~~Le~crf------DKVK~VRda~~~aL~~~K 288 (595)
-..|+.|.+.++ |.-.-||+.+.+-++++.
T Consensus 83 ~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 83 DHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhC
Confidence 245666776665 566779999999998875
No 280
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=51.11 E-value=80 Score=28.44 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhhc-cCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 046417 174 EQLRKLLPRLGKAVR-IEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD 250 (595)
Q Consensus 174 ~~L~~Ll~rL~klL~-~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av 250 (595)
.++..++|-+.+.|. +.....+.+.+-.++-++...... ...++.+|..+...+....- .+.++-||..|...-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 378899999999998 667788888888888877654433 45566677777766665543 566778888777544
No 281
>PRK14707 hypothetical protein; Provisional
Probab=49.88 E-value=4.7e+02 Score=35.45 Aligned_cols=176 Identities=16% Similarity=0.223 Sum_probs=97.7
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHH-------HHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHH---ccc
Q 046417 21 QRVITCLNKLADRDTLPVATAELESI-------ARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRS---HGD 90 (595)
Q Consensus 21 ~rvl~~L~KL~DrDT~r~A~~~LD~l-------A~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg---~gd 90 (595)
-+++..|.|.-|....+.|+..|..- ...|.+..+-..|+.|. ||+....|..+...||+. .++
T Consensus 712 AN~LNALSKWP~~~~Cr~AA~~LA~rL~~~p~l~~a~~aQevANaLNALS------KWPd~~~C~~AA~aLA~rLa~~~~ 785 (2710)
T PRK14707 712 ANALNALSKWPRTPVCAAVASALAARVVAEPRLRKAFDAQQVATALNALS------KWPDNQACAAAANTLAERQLREPD 785 (2710)
T ss_pred HHHHhhhhcCCCcHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHhh------cCCCchHHHHHHHHHHHHHhhCcc
Confidence 36788888988888888877766432 23355555777777665 566666666666666655 333
Q ss_pred cchhhHHHHHHHHHhhccC-CChhHHHHHHHHHHHhhhhhcCCc-----chh-ccHHHHHHHhhcCChhHHHHHHHHHHH
Q 046417 91 SLSPHLSKMISTVSCRLRD-PDSSVRSACVAATTAMSLNITKPS-----FSV-LSKPLIELILVEQDVNSQVGGAMCLAA 163 (595)
Q Consensus 91 ~I~PhLpkIL~~IvrrLkD-~ds~VR~Ac~~aLg~LA~~l~~~~-----~~~-~l~PLi~aLl~d~nk~VQ~~AA~cLaa 163 (595)
.....-++=|...++.|.- |+ ..+|..+...||..+...+ +.. -+-..+.+|-.=.+..+=..|+.+|+.
T Consensus 786 Lr~aL~pQ~vAn~LNALSKWPe---~~~Cr~AA~~LA~rLa~dp~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~ 862 (2710)
T PRK14707 786 VRDVLKPREMTNALNALSKWPD---TPACAAAASALAARVADDPRLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAE 862 (2710)
T ss_pred hhhhcCHHHHHHHHHHhhcCCC---chHHHHHHHHHHHHHhcChhHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 3333334666677777633 43 3456666677777665433 111 455666677322333445566777787
Q ss_pred HHhcCCCchHH-HHHHHHHHHHHhhccCchh-HHHHHHHHHHHH
Q 046417 164 AIDAAPNPEVE-QLRKLLPRLGKAVRIEGFK-AKAAVLGVIGSV 205 (595)
Q Consensus 164 viE~a~d~~~~-~L~~Ll~rL~klL~~~~~k-aK~alLsAIgSl 205 (595)
-+...++.-.. --+.|...|-.+=+|+... |+.+++...+-|
T Consensus 863 RLa~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL 906 (2710)
T PRK14707 863 RLADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERL 906 (2710)
T ss_pred HHhcChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHH
Confidence 66553322111 1123444444555777544 444444333333
No 282
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.47 E-value=5.2e+02 Score=30.15 Aligned_cols=179 Identities=15% Similarity=0.078 Sum_probs=105.5
Q ss_pred ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC---Cc-chhccHHHHHHHhhc-CChhHHHHHHHHHHHH
Q 046417 90 DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK---PS-FSVLSKPLIELILVE-QDVNSQVGGAMCLAAA 164 (595)
Q Consensus 90 d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~---~~-~~~~l~PLi~aLl~d-~nk~VQ~~AA~cLaav 164 (595)
+.+.++.++++.++.-.|++++..=-..+-.++..++.|+-- .+ .+.-..||+..++.- +.-...+.|.-|+..+
T Consensus 145 ~~l~~~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~l 224 (559)
T KOG2081|consen 145 DELAAQVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICAL 224 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHH
Confidence 667778889999999999998876567777778888888741 11 112455888777651 2334667777777777
Q ss_pred HhcCCCc-----hHHHH---HHHHHHHHHhh-ccCchhHHHHHHHHHHHHHHhhccc-------CcCcHHhHHHHHHHhc
Q 046417 165 IDAAPNP-----EVEQL---RKLLPRLGKAV-RIEGFKAKAAVLGVIGSVVRVGGAR-------SKGVLDWLVPCLVEFL 228 (595)
Q Consensus 165 iE~a~d~-----~~~~L---~~Ll~rL~klL-~~~~~kaK~alLsAIgSlA~a~g~~-------~~~yl~~lmp~L~e~L 228 (595)
.+...+. ..+.+ ..+++-..++- -...+. -..+++.|+.-.+++ .+.++-.++..|.-..
T Consensus 225 l~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d----~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~ 300 (559)
T KOG2081|consen 225 LYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLD----KNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVA 300 (559)
T ss_pred HHHhhhhhccCchhHHHhccccccchHHHHhhcccCHH----HHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhc
Confidence 7653111 11111 11222222221 222332 123556665433322 2445555666666667
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhH--------HhHHHHHHHHHHH-HHhccCCc
Q 046417 229 CCDDWATRKAAAEVLGKVAVFDK--------DLATEYKRSCLAA-LETRRFDK 272 (595)
Q Consensus 229 ~~dDW~~RkaAaEaLgsIA~avg--------e~f~py~~~~I~~-Le~crfDK 272 (595)
.+.+|++-.+.+-....+-..+- ..|.||....+.+ .++|+++.
T Consensus 301 ~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~ 353 (559)
T KOG2081|consen 301 GHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPP 353 (559)
T ss_pred cCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCC
Confidence 78999888887777777766541 1477777776666 55665544
No 283
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=47.25 E-value=2.4e+02 Score=26.82 Aligned_cols=107 Identities=8% Similarity=0.122 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH--HHHHHHHHhhccC-CChh
Q 046417 37 PVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL--SKMISTVSCRLRD-PDSS 113 (595)
Q Consensus 37 r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL--pkIL~~IvrrLkD-~ds~ 113 (595)
..-++-.|.+-.. +..-.-.+..|.....+.+|.+--.++.+|..++.-||..+..++ .+.+..+++.+.+ .++.
T Consensus 19 ~~il~icD~I~~~--~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~ 96 (144)
T cd03568 19 GLILDVCDKVKSD--ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPT 96 (144)
T ss_pred HHHHHHHHHHhcC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHH
Confidence 3444555555543 222334444454445556788889999999999999996554332 2445566666666 6778
Q ss_pred HHHHHHHHHHHhhhhhcCCcchhccHHHHHHH
Q 046417 114 VRSACVAATTAMSLNITKPSFSVLSKPLIELI 145 (595)
Q Consensus 114 VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aL 145 (595)
|+.=+..-+...+..+...+...++.-+...|
T Consensus 97 Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L 128 (144)
T cd03568 97 VKEKLREVVKQWADEFKNDPSLSLMSDLYKKL 128 (144)
T ss_pred HHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 99888888888887665433222333344444
No 284
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=45.71 E-value=3e+02 Score=31.72 Aligned_cols=166 Identities=16% Similarity=0.112 Sum_probs=89.8
Q ss_pred CChHHHHHHHHHHHHHHHHccccchh-hHHHHHH-HHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch------hccHH
Q 046417 69 SKSPVRKQCVNLLTLLSRSHGDSLSP-HLSKMIS-TVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS------VLSKP 140 (595)
Q Consensus 69 ~kp~vRKaaI~lLG~lAEg~gd~I~P-hLpkIL~-~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~------~~l~P 140 (595)
.+|..=++|.++||.++=.-+..+.- .+.|=.+ .+...--..|...|--+|-++..|+..-.-++++ .++.|
T Consensus 276 t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEP 355 (832)
T KOG3678|consen 276 TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEP 355 (832)
T ss_pred CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhh
Confidence 45888889999999887544433322 1222222 2222222336778888888888888543212221 37888
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc---ccCcCcH
Q 046417 141 LIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG---ARSKGVL 217 (595)
Q Consensus 141 Li~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g---~~~~~yl 217 (595)
|+..+ |.-.-.. + +.+-.-+.-++-+.||+.+|+++...++. |.|.---+.+.- ......|
T Consensus 356 lva~~--DP~~FAR-----------D-~hd~aQG~~~d~LqRLvPlLdS~R~EAq~--i~AF~l~~EAaIKs~Q~K~kVF 419 (832)
T KOG3678|consen 356 LVASL--DPGRFAR-----------D-AHDYAQGRGPDDLQRLVPLLDSNRLEAQC--IGAFYLCAEAAIKSLQGKTKVF 419 (832)
T ss_pred hhhcc--Ccchhhh-----------h-hhhhhccCChHHHHHhhhhhhcchhhhhh--hHHHHHHHHHHHHHhccchhHH
Confidence 88777 2221111 1 00100012234456777788877666542 222222222211 1112233
Q ss_pred Hh--HHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 046417 218 DW--LVPCLVEFLCCDDWATRKAAAEVLGKVAVFD 250 (595)
Q Consensus 218 ~~--lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av 250 (595)
.. .++.|++..++.|-..-+-|-++|..|...+
T Consensus 420 seIGAIQaLKevaSS~d~vaakfAseALtviGEEV 454 (832)
T KOG3678|consen 420 SEIGAIQALKEVASSPDEVAAKFASEALTVIGEEV 454 (832)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcccc
Confidence 32 5888888888888777788888888776644
No 285
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=45.13 E-value=57 Score=31.38 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=63.8
Q ss_pred HHHHHHhhhhcCCCCChHHH-HHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHH-hhhhhcCC
Q 046417 55 FSSFLNCLQTTDSSSKSPVR-KQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTA-MSLNITKP 132 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vR-KaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~-LA~~l~~~ 132 (595)
+..|...|.. -++|.+- --|..+++..-...... +.+.+-+++++.-+|.++.-.+.. +.. +
T Consensus 73 ~~~~~~~i~~---~~~W~~~D~~~~~~~~~~~~~~~~~---------~~~~~w~~s~~~~~rR~~~~~~~~~~~~----~ 136 (197)
T cd06561 73 LERFEPWIEY---IDNWDLVDSLCANLLGKLLYAEPEL---------DLLEEWAKSENEWVRRAAIVLLLRLIKK----E 136 (197)
T ss_pred HHHHHHHHcC---CchHHHHHHHHHHHHHHHHhcCcch---------HHHHHHHhCCcHHHHHHHHHHHHHHHHh----c
Confidence 5566666652 2345332 23444444444333322 456666778888887777666655 335 1
Q ss_pred cchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHH
Q 046417 133 SFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRK 178 (595)
Q Consensus 133 ~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~ 178 (595)
.....+-.+++.+.++.+..||.+.+-||..+.-.-++....|+.+
T Consensus 137 ~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~ 182 (197)
T cd06561 137 TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEK 182 (197)
T ss_pred ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 1123455677777777888899998888888877644444455544
No 286
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=43.32 E-value=2.3e+02 Score=26.76 Aligned_cols=88 Identities=9% Similarity=0.089 Sum_probs=0.0
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHH--HHHHHHHhhc-cCchhHHHHHHHHHHHHHHhh-cccC
Q 046417 138 SKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRK--LLPRLGKAVR-IEGFKAKAAVLGVIGSVVRVG-GARS 213 (595)
Q Consensus 138 l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~--Ll~rL~klL~-~~~~kaK~alLsAIgSlA~a~-g~~~ 213 (595)
++-|-.-| ...|+++|..|..-|+.++.+++......+.. ++..|.+++. ..+.++|.-++..|.+-+.+- +...
T Consensus 43 ~ral~krl-~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~ 121 (142)
T cd03569 43 MRALKKRL-LSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKPQ 121 (142)
T ss_pred HHHHHHHH-cCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCcc
Q ss_pred cCcHHhHHHHHHH
Q 046417 214 KGVLDWLVPCLVE 226 (595)
Q Consensus 214 ~~yl~~lmp~L~e 226 (595)
.+++..+-..|..
T Consensus 122 l~~i~~~y~~L~~ 134 (142)
T cd03569 122 LKYVVDTYQILKA 134 (142)
T ss_pred cHHHHHHHHHHHH
No 287
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=42.70 E-value=3.4e+02 Score=26.64 Aligned_cols=156 Identities=12% Similarity=0.141 Sum_probs=77.2
Q ss_pred hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC-CcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchH
Q 046417 95 HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK-PSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEV 173 (595)
Q Consensus 95 hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~-~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~ 173 (595)
++.+++..|+|..-+-=-.||..|+.++.++-.+-.. .+.+....+|...+-.+... .....
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~---------------~~~w~-- 66 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEA---------------SLNWS-- 66 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHccccccc---------------ccccC--
Confidence 3455666666655444456899999888888843321 12222333444333111100 00010
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHh-
Q 046417 174 EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC--CDDWATRKAAAEVLGKVAVFD- 250 (595)
Q Consensus 174 ~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~--~dDW~~RkaAaEaLgsIA~av- 250 (595)
--....|+++++|.-+.|. ..++..++...|..........-..|.+++. +++-......+..|..+....
T Consensus 67 -~~~~~F~~l~~LL~~~~y~-----~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~ 140 (193)
T PF12612_consen 67 -SSSEYFPRLVKLLDLPEYR-----YSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENL 140 (193)
T ss_pred -CHHHHHHHHHHHhccHHHH-----HHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC
Confidence 1123345556677666543 2234444443333334556666677777775 344455555556666655533
Q ss_pred H--HhHHHHHHHHHHHHHhccCCch
Q 046417 251 K--DLATEYKRSCLAALETRRFDKV 273 (595)
Q Consensus 251 g--e~f~py~~~~I~~Le~crfDKV 273 (595)
+ ..+.|...-+-..|++.=||.+
T Consensus 141 ~~dRv~vP~l~tl~~Ll~~~~~~~~ 165 (193)
T PF12612_consen 141 RNDRVVVPLLKTLDFLLSSGVFDSL 165 (193)
T ss_pred CCCCeeecHHHHHHHHHhCcchhcc
Confidence 3 2455655554455666555553
No 288
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=42.00 E-value=4.1e+02 Score=27.39 Aligned_cols=127 Identities=18% Similarity=0.129 Sum_probs=74.5
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHHHhcC---CCchH-HHHHHHHHHHHHhhccC--c---hhHHHHHH-HHHHHHHH
Q 046417 138 SKPLIELILVEQDVNSQVGGAMCLAAAIDAA---PNPEV-EQLRKLLPRLGKAVRIE--G---FKAKAAVL-GVIGSVVR 207 (595)
Q Consensus 138 l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a---~d~~~-~~L~~Ll~rL~klL~~~--~---~kaK~alL-sAIgSlA~ 207 (595)
..-++..|+.-..+.+-..+.-++..+++.. ..+.. .+....+..++..+.+. . .--|.+-| -+|.+|..
T Consensus 98 g~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ 177 (255)
T PF10350_consen 98 GELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILS 177 (255)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHh
Confidence 3444555554556666667777778887763 22222 23344556666666555 1 22344444 56666665
Q ss_pred hhcccCcCcHHhHHHHHHHhccCCC--------HHHHHHHHHHHHHHHH--HhHHhHHHHHHHHHHH
Q 046417 208 VGGARSKGVLDWLVPCLVEFLCCDD--------WATRKAAAEVLGKVAV--FDKDLATEYKRSCLAA 264 (595)
Q Consensus 208 a~g~~~~~yl~~lmp~L~e~L~~dD--------W~~RkaAaEaLgsIA~--avge~f~py~~~~I~~ 264 (595)
+......+.+..+|..|.++...+. -.-+.-|+.+|-.|-. .+++...+|.+..+.+
T Consensus 178 ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~l 244 (255)
T PF10350_consen 178 AEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALIL 244 (255)
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 5433333788999999999875321 1456777777777754 3456777787665544
No 289
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=41.83 E-value=1e+02 Score=26.57 Aligned_cols=60 Identities=15% Similarity=0.260 Sum_probs=48.6
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHH
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSA 117 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~A 117 (595)
|.||...+.. ..+..+|+-.+.++..+.+.|++.|..=.+.|+..+-....|.+..+-.-
T Consensus 19 L~Pf~~i~~~---~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~ 78 (86)
T PF09324_consen 19 LKPFEYIMSN---NPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRL 78 (86)
T ss_pred HHHHHHHHhc---cCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHH
Confidence 6666666543 35689999999999999999999998889999999999988876654333
No 290
>COG5314 Conjugal transfer/entry exclusion protein [Intracellular trafficking and secretion]
Probab=40.58 E-value=66 Score=33.34 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=44.6
Q ss_pred CCCcchHHHHHHHHHHHHH-------hhHHHHHHHHHHhccccchhhhhhhhhhhHHHHHHHHHHHhhhcCcc
Q 046417 475 KDPEDLSLIREQLLQIENQ-------QSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDLALSNGRI 540 (595)
Q Consensus 475 ~~~~~~~~i~~ql~qie~q-------q~~l~~llq~fmg~s~~~m~~le~rv~gle~~~d~is~dl~~s~gr~ 540 (595)
|..++.+.-=++|.||||| =.-++||||---+-+-+...-|+.=+.-|+.++|+.++ ++.+-|-+
T Consensus 41 N~~Qnilta~rsleqVnnQIqqlQnQaq~yqNmlqNta~l~~~iw~Ql~~~l~kl~~l~d~aqg-~afdvg~i 112 (252)
T COG5314 41 NYAQNILTAVRSLEQVNNQIQQLQNQAQQYQNMLQNTAALPFYIWGQLSQVLNKLQNLQDQAQG-YAFDVGSI 112 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhH-HHhhhhhH
Confidence 4445555555555555555 44566777777777777888899999999999999765 45554544
No 291
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.36 E-value=68 Score=34.73 Aligned_cols=62 Identities=29% Similarity=0.306 Sum_probs=43.7
Q ss_pred hcCCCCChHHHHHHH-HHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhh
Q 046417 64 TTDSSSKSPVRKQCV-NLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLN 128 (595)
Q Consensus 64 d~~ss~kp~vRKaaI-~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~ 128 (595)
+...++.|.+|++++ .++|..++ -+..+..+=...|+.+.+.++|+++ -+-++.+++.+++.
T Consensus 10 ~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 10 ELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 334456789999999 45566666 3355566667889999999999998 33445577777754
No 292
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=38.87 E-value=6.1e+02 Score=28.50 Aligned_cols=233 Identities=12% Similarity=0.097 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCCh-HHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCC-ChhHH
Q 046417 38 VATAELESIARTLTQDSFSSFLNCLQTTDSSSKS-PVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDP-DSSVR 115 (595)
Q Consensus 38 ~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp-~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~-ds~VR 115 (595)
-|++.|-..+..++.+.++.+-.+..+.....+| ..|++++.+|-.++++..+.....= ..+.+.+.++ .+..=
T Consensus 9 ~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R----~~fF~~I~~~~~~~d~ 84 (464)
T PF11864_consen 9 KAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR----AEFFRDISDPSNDDDF 84 (464)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH----HHHHHHHhcCCCchhH
Confidence 3667777777777777788888888777665555 7999999999999999876322211 2223333333 22222
Q ss_pred HHHHHHHHHhhhhhcCC-cch--------hccHHHHHHHhh-----c-----CChh-----HHHHHHHHHHHHHhc----
Q 046417 116 SACVAATTAMSLNITKP-SFS--------VLSKPLIELILV-----E-----QDVN-----SQVGGAMCLAAAIDA---- 167 (595)
Q Consensus 116 ~Ac~~aLg~LA~~l~~~-~~~--------~~l~PLi~aLl~-----d-----~nk~-----VQ~~AA~cLaaviE~---- 167 (595)
..-..+|-.|..+.-+- .+. ..+.+++.+.-. . +.+. .+.....-|=.++.+
T Consensus 85 ~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKf 164 (464)
T PF11864_consen 85 DLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKF 164 (464)
T ss_pred HHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhc
Confidence 34444555555444321 111 134444422210 0 0000 011111111112211
Q ss_pred -CCCchHHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 046417 168 -APNPEVEQLRKLLPRLGKAVRIEGFK-AKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGK 245 (595)
Q Consensus 168 -a~d~~~~~L~~Ll~rL~klL~~~~~k-aK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgs 245 (595)
......+.+..|+.+++.+-...... -=.+.|..+.+++..|... ...+..++..|-...... ...+.+-.+|..
T Consensus 165 n~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP-~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~n 241 (464)
T PF11864_consen 165 NFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIP-SESLSPCIEVLCSIVNSV--SLCKPSWRTMRN 241 (464)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCC-hHHHHHHHHHHhhHhccc--ccchhHHHHHHH
Confidence 12222345666666666663222111 1135567777776655443 344555555555554333 445566667777
Q ss_pred HHH-HhHHhHHHHHHHHHHHH---HhccCCchHHHHHHH
Q 046417 246 VAV-FDKDLATEYKRSCLAAL---ETRRFDKVKIVRETM 280 (595)
Q Consensus 246 IA~-avge~f~py~~~~I~~L---e~crfDKVK~VRda~ 280 (595)
|+. ..|..+... ...+| ..-..+-+..+|.|+
T Consensus 242 L~~S~~g~~~i~~---L~~iL~~~~~~~~~~~~~lRGAv 277 (464)
T PF11864_consen 242 LLKSHLGHSAIRT---LCDILRSPDPQNKRDINVLRGAV 277 (464)
T ss_pred HHcCccHHHHHHH---HHHHHcccCccccccHHHHhhHH
Confidence 764 345433322 22334 111234567777653
No 293
>PF02465 FliD_N: Flagellar hook-associated protein 2 N-terminus; InterPro: IPR003481 The flagellar hook-associated protein 2 (HAP2 or FliD) is the capping protein for the flagella and forms the distal end of the flagella. The protein plays a role in mucin specific adhesion of the bacteria [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum
Probab=38.56 E-value=86 Score=27.34 Aligned_cols=54 Identities=22% Similarity=0.269 Sum_probs=48.2
Q ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHhccccchhhhhhhhhhhHHHHHHHHH
Q 046417 478 EDLSLIREQLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISY 531 (595)
Q Consensus 478 ~~~~~i~~ql~qie~qq~~l~~llq~fmg~s~~~m~~le~rv~gle~~~d~is~ 531 (595)
=|+..|=+||.++|++.-..|+-=+.-...-++.+..|.+.+..|--+++.+..
T Consensus 4 ~D~~~lv~~l~~~e~~~~~~l~~~~~~~~~k~sa~~~l~s~l~~l~~~~~~L~~ 57 (99)
T PF02465_consen 4 IDTESLVDQLMQAERAPIDRLQQKKTSLEWKQSAYGSLNSKLSTLQSALSDLNS 57 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 378889999999999999888888888999999999999999999988888754
No 294
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=38.51 E-value=6.1e+02 Score=28.44 Aligned_cols=214 Identities=17% Similarity=0.155 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHhhhcCCCC--hHHHHHHHHHHHH--HhCCcCcHH---HHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc
Q 046417 16 TNDLKQRVITCLNKLADRD--TLPVATAELESIA--RTLTQDSFS---SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH 88 (595)
Q Consensus 16 ~~~lk~rvl~~L~KL~DrD--T~r~A~~~LD~lA--~~L~~~~lp---~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~ 88 (595)
-++|-.+.+..+.+..|.. |++-+++.+.... +.|+.-.++ .+...+.-.+..+++...+.+--++|.++--.
T Consensus 55 ~~dl~~~~~d~lde~~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vql 134 (427)
T KOG2842|consen 55 QEDLEEKLKDDLDEVKDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQA 134 (427)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhc
Confidence 3566667777776666544 5554555554432 233311122 22222332234445544444444566665544
Q ss_pred c--ccchhhHHHHHHHHHhhccCCChhH--HHHHHHHHHH--hhhhhcCCcchhccHHHHHH-----HhhcCChhHHHHH
Q 046417 89 G--DSLSPHLSKMISTVSCRLRDPDSSV--RSACVAATTA--MSLNITKPSFSVLSKPLIEL-----ILVEQDVNSQVGG 157 (595)
Q Consensus 89 g--d~I~PhLpkIL~~IvrrLkD~ds~V--R~Ac~~aLg~--LA~~l~~~~~~~~l~PLi~a-----Ll~d~nk~VQ~~A 157 (595)
+ ...--.+....++....+.|.+..| |.+|+.++|. +........+..++.-+-+. +..+..+.+-...
T Consensus 135 g~~q~~ee~~~t~~~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 214 (427)
T KOG2842|consen 135 GPGQEEEEWTKTLGPFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQ 214 (427)
T ss_pred cCcchhhHHHhccchHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccc
Confidence 4 3333344455667777778887776 7777766544 33322212222222222111 2122222222222
Q ss_pred -----HHHHHHHHhc---CCCchHH-HHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh---cccC-cCcHHhHHHHH
Q 046417 158 -----AMCLAAAIDA---APNPEVE-QLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG---GARS-KGVLDWLVPCL 224 (595)
Q Consensus 158 -----A~cLaaviE~---a~d~~~~-~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~---g~~~-~~yl~~lmp~L 224 (595)
+.|+++--+. ++.+... ....+.|++.++|.......+-+.-+++..++... ...| -+-.+.++..|
T Consensus 215 ~~~l~~~~~~~~a~~Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~l 294 (427)
T KOG2842|consen 215 NLGLLLTCLTAWSLLLTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTL 294 (427)
T ss_pred hhHHHHHHHHHHHHHHHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHH
Confidence 2222221111 1222222 33346788888887776655555555555555543 2222 23345555555
Q ss_pred HHhcc
Q 046417 225 VEFLC 229 (595)
Q Consensus 225 ~e~L~ 229 (595)
....+
T Consensus 295 r~lat 299 (427)
T KOG2842|consen 295 RDLAT 299 (427)
T ss_pred HHHHH
Confidence 54443
No 295
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=37.92 E-value=3.4e+02 Score=25.32 Aligned_cols=72 Identities=10% Similarity=0.006 Sum_probs=49.0
Q ss_pred HHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHH---HHHHHHHHhccC-------Cch-HHHHHHHHHHHH
Q 046417 217 LDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYK---RSCLAALETRRF-------DKV-KIVRETMNRSLE 285 (595)
Q Consensus 217 l~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~---~~~I~~Le~crf-------DKV-K~VRda~~~aL~ 285 (595)
+..+|..|...|.+..--++.-++-+|-.+...-.+.|...+ ...|+.+.+++. |-. +.||+++.+++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 456777788888777766656666666666655444555443 456677777776 333 899999999988
Q ss_pred HhH
Q 046417 286 MWK 288 (595)
Q Consensus 286 ~~K 288 (595)
++-
T Consensus 116 ~if 118 (122)
T cd03572 116 AIF 118 (122)
T ss_pred HHh
Confidence 763
No 296
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.82 E-value=98 Score=32.00 Aligned_cols=67 Identities=21% Similarity=0.158 Sum_probs=51.1
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh---cccCcCcHHhHHHHHHHhc
Q 046417 162 AAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG---GARSKGVLDWLVPCLVEFL 228 (595)
Q Consensus 162 aaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~---g~~~~~yl~~lmp~L~e~L 228 (595)
.-++...++-++|.|++|+.-|-.+|.+.+.++.-..|.+|.-+..++ |.+..||+.+++|.+.-|=
T Consensus 139 ~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~n~~k 208 (262)
T KOG3961|consen 139 TDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPFYRQLLPVLNTFK 208 (262)
T ss_pred HHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhhhhhhhc
Confidence 344455567778899999999999998888887777777777666543 5567899999999998774
No 297
>PF05536 Neurochondrin: Neurochondrin
Probab=37.77 E-value=3.9e+02 Score=30.88 Aligned_cols=174 Identities=14% Similarity=0.170 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhhhh--hcCCcc-hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHhhcc
Q 046417 114 VRSACVAATTAMSLN--ITKPSF-SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKAVRI 189 (595)
Q Consensus 114 VR~Ac~~aLg~LA~~--l~~~~~-~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~ 189 (595)
-++.++-.|+.|+.. +...+. ..-++.|++.|....+..+..-+..||.++. +.++.....+. .-++.|+..+.+
T Consensus 73 ~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 73 YLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN 151 (543)
T ss_pred HHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh
Confidence 366666555666541 110111 2366777777744334366777888888888 32222222222 244555555544
Q ss_pred CchhHHHHHHHHHHHHHHhhcc----cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH----------HhHH
Q 046417 190 EGFKAKAAVLGVIGSVVRVGGA----RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK----------DLAT 255 (595)
Q Consensus 190 ~~~kaK~alLsAIgSlA~a~g~----~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg----------e~f~ 255 (595)
..+ .+..++.++..+....+. .....+..+++.|........-..+..+++.|+.+-.... ....
T Consensus 152 ~~~-~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 152 QSF-QMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred Ccc-hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 332 344555555554443221 1234455666777666665555677888888888854331 1222
Q ss_pred HHHHHHHHHHHhccCCch-HHHHHHHHHHHHHhHhcCCC
Q 046417 256 EYKRSCLAALETRRFDKV-KIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 256 py~~~~I~~Le~crfDKV-K~VRda~~~aL~~~K~i~~~ 293 (595)
.....+-.+|.+ |+ +.-|+.+......+-++.|.
T Consensus 231 ~l~~gl~~iL~s----r~~~~~R~~al~Laa~Ll~~~G~ 265 (543)
T PF05536_consen 231 DLRKGLRDILQS----RLTPSQRDPALNLAASLLDLLGP 265 (543)
T ss_pred HHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHhCh
Confidence 223344445553 35 56688877777777777654
No 298
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=37.71 E-value=56 Score=29.50 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhHH-----HHHHHHHHhccccchhhhhhhhhhhHHHHHHH
Q 046417 482 LIREQLLQIENQQSSL-----FDLLQRFIGSSQSGMNSLETRVHGLEMALDEI 529 (595)
Q Consensus 482 ~i~~ql~qie~qq~~l-----~~llq~fmg~s~~~m~~le~rv~gle~~~d~i 529 (595)
...+.|.+||.+-.+| +.-||.-|+.--.-|..|+.++.|+++.++=+
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3389999999999888 88889999888888888888888888777643
No 299
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.07 E-value=5.1e+02 Score=32.51 Aligned_cols=165 Identities=15% Similarity=0.140 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHccccchhhHHHHHH-HHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch--hccHHHHHHHhhcCC
Q 046417 74 RKQCVNLLTLLSRSHGDSLSPHLSKMIS-TVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS--VLSKPLIELILVEQD 150 (595)
Q Consensus 74 RKaaI~lLG~lAEg~gd~I~PhLpkIL~-~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~--~~l~PLi~aLl~d~n 150 (595)
|-+.+......-+...|-|-..|..|.- .++-|-+|-++.+|..|...||.....+.. -+. .||+-+==.| .|.+
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~-~Fl~dsYLKYiGWtL-sDk~ 339 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPE-IFLSDSYLKYIGWTL-SDKN 339 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccH-HHhcchHHHHhccee-ecCc
Confidence 4455555444444455666666666654 345789999999999999888877765521 111 2665444444 6777
Q ss_pred hhHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHhhc-cCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHH
Q 046417 151 VNSQVGGAMCLAAAIDAAPNP--EVEQLRKLLPRLGKAVR-IEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVE 226 (595)
Q Consensus 151 k~VQ~~AA~cLaaviE~a~d~--~~~~L~~Ll~rL~klL~-~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e 226 (595)
-.|-.....+|..+.|...+. +.-+..+.-.|++.+.. .-..-++...|-..- . ..+.+++ +.-+-.+-+
T Consensus 340 ~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~--~----~~~~g~L~d~di~~Vy~ 413 (1048)
T KOG2011|consen 340 GTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCL--L----LSSSGLLSDKDILIVYS 413 (1048)
T ss_pred cHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH--H----HhcccccChhHHHHHHH
Confidence 778888888899999983222 23455667778887772 223333332221111 1 1122333 223344555
Q ss_pred hccCCCHHHHHHHHHHHHHH
Q 046417 227 FLCCDDWATRKAAAEVLGKV 246 (595)
Q Consensus 227 ~L~~dDW~~RkaAaEaLgsI 246 (595)
.+-+.+-+++.+|.+-|..-
T Consensus 414 Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 414 LIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHhccCcchHHHHHHHHHHH
Confidence 66677778888888877654
No 300
>COG5412 Phage-related protein [Function unknown]
Probab=36.47 E-value=7.9e+02 Score=29.14 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHcc---ccchhhHHHHHHHHHhhccCCChhHHHH
Q 046417 71 SPVRKQCVNLLTLLSRSHG---DSLSPHLSKMISTVSCRLRDPDSSVRSA 117 (595)
Q Consensus 71 p~vRKaaI~lLG~lAEg~g---d~I~PhLpkIL~~IvrrLkD~ds~VR~A 117 (595)
..-|.+..-.+..+++++. ..+.|.+.+|++.+...+..--+.|-++
T Consensus 214 e~Fr~~v~~Vid~I~~gf~ql~~~~~~~Is~Il~~vm~~~s~l~~iv~~~ 263 (637)
T COG5412 214 ESFRNAVRGVIDTIAQGFVQLAWSLIPFISAILEVVMQGGSALMPIVTQA 263 (637)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666777665 4446666666666666554444444333
No 301
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=35.82 E-value=2.6e+02 Score=25.99 Aligned_cols=76 Identities=13% Similarity=-0.047 Sum_probs=49.5
Q ss_pred HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHH--HHHHHHHHhccCCch-HH-HHHHHHHHHHHhHhcCCC
Q 046417 218 DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYK--RSCLAALETRRFDKV-KI-VRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 218 ~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~--~~~I~~Le~crfDKV-K~-VRda~~~aL~~~K~i~~~ 293 (595)
..++..|...|.+.+=.+-.-|+..|-.+..-+|..|..+. ..++..|...-.++- .+ ||+-+.+.++.|..-...
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 34556677777776666667789999999998886554332 223333332222222 22 999999999999986643
No 302
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.26 E-value=9.5e+02 Score=29.69 Aligned_cols=211 Identities=11% Similarity=0.041 Sum_probs=105.1
Q ss_pred HHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh--hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch
Q 046417 58 FLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP--HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS 135 (595)
Q Consensus 58 fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P--hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~ 135 (595)
.+--|.|++..-+-..|=+.++.++ -+|..+-+ ...+++..|..-..-.||.=|.-....+|+++..+.+- .
T Consensus 64 ~llrLaDaF~~Gn~llRf~V~rv~~----q~g~hln~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipEf--n 137 (970)
T KOG1988|consen 64 QLLRLADAFPVGNNLLRFAVLRVDQ----QSGKHLNKVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPEF--N 137 (970)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHh----hccccchhhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcccc--c
Confidence 3334455555445566766666655 33333322 22344444444555678888999999999999887431 1
Q ss_pred hccHH-HHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchh--HHHHHHHHHHHHHHhhccc
Q 046417 136 VLSKP-LIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFK--AKAAVLGVIGSVVRVGGAR 212 (595)
Q Consensus 136 ~~l~P-Li~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~k--aK~alLsAIgSlA~a~g~~ 212 (595)
...- +...| ...+..--.+|+.|.+.+.+...+.. .-||.++.+++...... .|-+++-+++-+...+..+
T Consensus 138 -~~hhlIr~sl-~S~helE~eaa~~Aaa~Faa~sk~FA----~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~A 211 (970)
T KOG1988|consen 138 -QVHHLIRISL-DSHHELEVEAAEFAAACFAAQSKDFA----CSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATGA 211 (970)
T ss_pred -chhHHHHHHh-cCccchhhHHHHHHHhhhhhhhhhhH----HHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhhh
Confidence 1111 22333 22222223567777777777665533 34666667777554332 3455555555444322111
Q ss_pred CcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417 213 SKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 213 ~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~ 287 (595)
...+..+|.++..+-+.+. . .+-+.++..+|.-.-..+..-...| ++-.++|+-|+||-.+.+.+..+
T Consensus 212 -~ra~~l~m~lv~~tps~d~-~--v~fL~stT~Lasrs~~ai~eq~d~l---~q~~ked~~kivr~~vl~kl~~L 279 (970)
T KOG1988|consen 212 -SRAFGLCMSLVSGTPSIDR-V--VAFLYSTTNLASRSLVAISEQSDVL---LQFLKEDERKIVRLKVLRKLDFL 279 (970)
T ss_pred -HHHHHHHHHHhcCCCcccc-e--eeehhhhHHHHHHHHHHhHHHHHHH---HHhhcCCchhHHHHHHHHHHHHH
Confidence 1223444444444433221 0 1123333333332222233223333 33335688888887766555443
No 303
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=34.96 E-value=8.4e+02 Score=29.86 Aligned_cols=75 Identities=17% Similarity=0.099 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc-----CCCHHHHHHHHHHHHHHH
Q 046417 173 VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC-----CDDWATRKAAAEVLGKVA 247 (595)
Q Consensus 173 ~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~-----~dDW~~RkaAaEaLgsIA 247 (595)
..++.-++.++-..+...+.++..+++..|..++--- ..-++.++.....++. .+....=...+||+..|+
T Consensus 224 ~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~----~e~m~~Lv~~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~ 299 (802)
T PF13764_consen 224 KEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGN----EEKMDALVEHFKPYLDFDKFDEEHSPDEQFKLECFCEIA 299 (802)
T ss_pred HHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCC----HHHHHHHHHHHHHhcChhhcccccCchHHHHHHHHHHHH
Confidence 4566666666665554445545455555555444211 1223444444444442 111111235599999999
Q ss_pred HHhH
Q 046417 248 VFDK 251 (595)
Q Consensus 248 ~avg 251 (595)
.++.
T Consensus 300 ~~I~ 303 (802)
T PF13764_consen 300 EGIP 303 (802)
T ss_pred hcCC
Confidence 8774
No 304
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=34.49 E-value=5.3e+02 Score=28.36 Aligned_cols=178 Identities=14% Similarity=0.196 Sum_probs=94.3
Q ss_pred HHHhhhcCCCChHHH-HHHHHHHHHHh------CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH
Q 046417 24 ITCLNKLADRDTLPV-ATAELESIART------LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL 96 (595)
Q Consensus 24 l~~L~KL~DrDT~r~-A~~~LD~lA~~------L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL 96 (595)
+.+|.+-...|..|. |+.-...+... +|...+..++++.. +.+-..|..|+.-|..++=..++.+.-
T Consensus 72 i~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae----~~~D~lr~~cletL~El~l~~P~lv~~-- 145 (371)
T PF14664_consen 72 IRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAE----HEDDRLRRICLETLCELALLNPELVAE-- 145 (371)
T ss_pred HhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHh----CCchHHHHHHHHHHHHHHhhCHHHHHH--
Confidence 445555333333433 55544444443 12222333333333 345678888888887777777765421
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc-C----Ccc--hhccHHHHHHHhh--cCCh--hHHHHHHHHHHHHH
Q 046417 97 SKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT-K----PSF--SVLSKPLIELILV--EQDV--NSQVGGAMCLAAAI 165 (595)
Q Consensus 97 pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~-~----~~~--~~~l~PLi~aLl~--d~nk--~VQ~~AA~cLaavi 165 (595)
..-+..+++.+-|+...+-++++.++-.+-.+-. + ... ..++-|..+.=.. ..+. ..-.+++.++..+.
T Consensus 146 ~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~L 225 (371)
T PF14664_consen 146 CGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLL 225 (371)
T ss_pred cCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHH
Confidence 1234566777777555577777777655543211 1 111 1245555554100 1121 12245566677777
Q ss_pred hcCCCch-HHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417 166 DAAPNPE-VEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVR 207 (595)
Q Consensus 166 E~a~d~~-~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~ 207 (595)
-+=+-.+ .-.-. .-+..|+..|..|...++.++++.+-.+..
T Consensus 226 rsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 226 RSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred hcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 6521111 00000 445667778888999999999988887775
No 305
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=34.46 E-value=6.8e+02 Score=29.27 Aligned_cols=73 Identities=21% Similarity=0.240 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhc-cCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHH----hccCCCHHHHHHHHHHHHHHHH
Q 046417 175 QLRKLLPRLGKAVR-IEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVE----FLCCDDWATRKAAAEVLGKVAV 248 (595)
Q Consensus 175 ~L~~Ll~rL~klL~-~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e----~L~~dDW~~RkaAaEaLgsIA~ 248 (595)
.+..++-.+..++. .+.-.+|.++++-++++...- .++-. +...|.|-+ .|.+.+|.+.--|+|+.+.+|.
T Consensus 476 ~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~---i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe 552 (559)
T PF14868_consen 476 LIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLF---IPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAE 552 (559)
T ss_pred HHHHHHHHHHHHHhhCCCccchHHHHHHHHHhcccc---CCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 45566666677773 345558999888888766421 11111 234444443 3679999999999999999987
Q ss_pred Hh
Q 046417 249 FD 250 (595)
Q Consensus 249 av 250 (595)
..
T Consensus 553 ~T 554 (559)
T PF14868_consen 553 RT 554 (559)
T ss_pred cC
Confidence 43
No 306
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=34.10 E-value=1.4e+02 Score=34.68 Aligned_cols=122 Identities=16% Similarity=0.110 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhcCCCch-HH-HHHHHHHHHHHhh---------------ccCchhHHHHHHHHHHHHHHhhcccCcC
Q 046417 153 SQVGGAMCLAAAIDAAPNPE-VE-QLRKLLPRLGKAV---------------RIEGFKAKAAVLGVIGSVVRVGGARSKG 215 (595)
Q Consensus 153 VQ~~AA~cLaaviE~a~d~~-~~-~L~~Ll~rL~klL---------------~~~~~kaK~alLsAIgSlA~a~g~~~~~ 215 (595)
.|-...+ ..+++.+.-.. .. +-..++||+++.| ++....+|.++|-.|-. ... ....
T Consensus 19 ~~~~~~y--~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~---~ck-~~~~ 92 (556)
T PF05918_consen 19 SQHEEDY--KEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQ---LCK-DNPE 92 (556)
T ss_dssp GGGHHHH--HHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGG---G---T--T
T ss_pred ccCHHHH--HHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHH---HHH-hHHH
Confidence 3434444 67777753222 23 3346788887766 22222333222222221 111 2357
Q ss_pred cHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 046417 216 VLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DLATEYKRSCLAALETRRFDKVKIVRETMNRSLE 285 (595)
Q Consensus 216 yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~ 285 (595)
++..+.-.|.++|..+|-..+.++-.+|..+..... ..+..+...++..-+ .| -.||+-+...|.
T Consensus 93 ~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~---~d--e~~Re~~lkFl~ 158 (556)
T PF05918_consen 93 HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKS---GD--EQVRERALKFLR 158 (556)
T ss_dssp -HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---H---S---HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc---Cc--hHHHHHHHHHHH
Confidence 888889999999999998888888888888877664 466655555443211 23 479999888774
No 307
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=33.74 E-value=3.2e+02 Score=31.23 Aligned_cols=109 Identities=10% Similarity=0.087 Sum_probs=68.4
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC-Ccch--hccHHHHHHHhh----cCChhHHHHHHHHHHHHHhcCC
Q 046417 97 SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK-PSFS--VLSKPLIELILV----EQDVNSQVGGAMCLAAAIDAAP 169 (595)
Q Consensus 97 pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~-~~~~--~~l~PLi~aLl~----d~nk~VQ~~AA~cLaaviE~a~ 169 (595)
|+++.+++.-+...|.....+.+-++|-|++.=.. ..++ .++.-|++.|.. +.|..+|-+++.||..+.=-
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-- 391 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-- 391 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc--
Confidence 46888888889999999999999999999953100 0122 378889999865 45777898988888876421
Q ss_pred Cch-HHHHHH-HHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417 170 NPE-VEQLRK-LLPRLGKAVRIEGFKAKAAVLGVIGSVVR 207 (595)
Q Consensus 170 d~~-~~~L~~-Ll~rL~klL~~~~~kaK~alLsAIgSlA~ 207 (595)
..- ..+++. +.+.++..++.....+.--+++.++-+..
T Consensus 392 v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 392 VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred CCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence 111 112222 44445555544433333345666665554
No 308
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=33.31 E-value=14 Score=39.82 Aligned_cols=62 Identities=27% Similarity=0.403 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHHHHHHHHhhHHHHHHHHHHhccccchhhhhhhhhhhHHHHHHHHHHHhhhcCcc
Q 046417 475 KDPEDLSLIREQLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEISYDLALSNGRI 540 (595)
Q Consensus 475 ~~~~~~~~i~~ql~qie~qq~~l~~llq~fmg~s~~~m~~le~rv~gle~~~d~is~dl~~s~gr~ 540 (595)
-+++||..||+-|.-||-.+.+|= .=+|+-..-|..|+++.++|+.+|.++.-+|.-=++.+
T Consensus 25 ~s~GDLs~I~eRLsaLEssv~sL~----~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV 86 (326)
T PF04582_consen 25 TSPGDLSPIRERLSALESSVASLS----DSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTV 86 (326)
T ss_dssp ------------------------------------------------------------------
T ss_pred CCcccHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999988763 33566666666666666666666666666555433433
No 309
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=33.12 E-value=90 Score=26.54 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHccccchhhHH--HHHHHHHhhccC-CChhHHHHHHHHHHHhhhh
Q 046417 73 VRKQCVNLLTLLSRSHGDSLSPHLS--KMISTVSCRLRD-PDSSVRSACVAATTAMSLN 128 (595)
Q Consensus 73 vRKaaI~lLG~lAEg~gd~I~PhLp--kIL~~IvrrLkD-~ds~VR~Ac~~aLg~LA~~ 128 (595)
..|+++-++|-++..-. =.++|+ .+++.|++.... |-.+||.-|..+||-+|.-
T Consensus 3 ~lKaaLWaighIgss~~--G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPL--GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHHhHhcChH--HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 46899999999877532 233333 588888888765 4557999999999999963
No 310
>KOG3613 consensus Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=32.63 E-value=3.6e+02 Score=35.42 Aligned_cols=166 Identities=13% Similarity=0.080 Sum_probs=109.4
Q ss_pred ccchhhHHHHHHHHHhhccCCC---hhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHH-HHHHHH
Q 046417 90 DSLSPHLSKMISTVSCRLRDPD---SSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAM-CLAAAI 165 (595)
Q Consensus 90 d~I~PhLpkIL~~IvrrLkD~d---s~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~-cLaavi 165 (595)
+.+.|-+..|+.+|+.-|+.-. ...-.||...|+.++.+--. ....+-.+--|+.|+..-.-.+.|. =...++
T Consensus 1389 ~kv~~lls~v~~~ItPylk~~sa~nap~~~a~~~LLasLSgy~y~---rkaWrKe~~eLF~D~~fFqmd~s~l~~W~~Ii 1465 (1749)
T KOG3613|consen 1389 DKVVPLLSIVNYNITPYLKNHSARNAPLFRAGLQLLASLSGYQYT---RKAWRKEFLELFLDNSFFQMDLSCLRHWSSII 1465 (1749)
T ss_pred hhhhhHHHHHHHhhhHHhccccccccchHHHHHHHHHHHhcCchh---HHHHHHHHHHHhcCcchheeeHHHHHHHHHHH
Confidence 4557888888888888777643 33567888888888875321 1145555555554443321122222 237777
Q ss_pred hcCCCchHHHHHHHHHHHHH-------hhc--cCchhHHHHHHHHHHHHHHhhc-ccCcCcHHhHHHHHHHhcc-CCCHH
Q 046417 166 DAAPNPEVEQLRKLLPRLGK-------AVR--IEGFKAKAAVLGVIGSVVRVGG-ARSKGVLDWLVPCLVEFLC-CDDWA 234 (595)
Q Consensus 166 E~a~d~~~~~L~~Ll~rL~k-------lL~--~~~~kaK~alLsAIgSlA~a~g-~~~~~yl~~lmp~L~e~L~-~dDW~ 234 (595)
+.+-..+.-++.+||.|+.- ++. +.-+..|+++|--|+=++-++. ..+.+|++.+...|.+.|. +.+-.
T Consensus 1466 d~lmt~d~t~f~DLm~ri~~s~s~s~~lftSrd~e~e~ra~~LkRiaf~ifsSp~Dqy~~~lp~iqErl~~~Lrv~~~~~ 1545 (1749)
T KOG3613|consen 1466 DHLMTHDKTIFNDLMTRISSSQSGSLNLFTSRDQELEQRAMLLKRIAFLIFSSPLDQYLGYLPDIQERLADLLRVSQSPK 1545 (1749)
T ss_pred HHHHhCCchHHHHHHHHhhcccccceeeeecchHHHHHHHHHHHhhHhheeeCcHHhhhhhchhHHHHHHHhcccCCCch
Confidence 77433333589999998553 332 2356788888877775555554 3478999989999999988 78889
Q ss_pred HHHHHHHHHHHHHHHh-HHhHHHHH
Q 046417 235 TRKAAAEVLGKVAVFD-KDLATEYK 258 (595)
Q Consensus 235 ~RkaAaEaLgsIA~av-ge~f~py~ 258 (595)
+|++..-++-.++.-. .+.+.++-
T Consensus 1546 lk~~vFL~~RVLLLR~Sp~hL~~LW 1570 (1749)
T KOG3613|consen 1546 LKKAVFLFFRVLLLRISPDHLTSLW 1570 (1749)
T ss_pred HHHHHHHHHHHHHHhcCHhhcccch
Confidence 9999999999998765 35555543
No 311
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=32.01 E-value=3.6e+02 Score=23.86 Aligned_cols=73 Identities=11% Similarity=0.130 Sum_probs=50.4
Q ss_pred cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc---------cCCChhHHHHHHHHH
Q 046417 52 QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL---------RDPDSSVRSACVAAT 122 (595)
Q Consensus 52 ~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL---------kD~ds~VR~Ac~~aL 122 (595)
++....++..|.....+.+|.+.--++.+|..++.-||+....++..-. ++...+ .|.+..||.-+...+
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~-~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~ 110 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASND-FAVELLKFDKSKLLGDDVSTNVREKAIELV 110 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhH-HHHHHHHhhccccccCCCChHHHHHHHHHH
Confidence 3456777778877777789999999999999999999976655553321 233322 245667887776655
Q ss_pred HHh
Q 046417 123 TAM 125 (595)
Q Consensus 123 g~L 125 (595)
...
T Consensus 111 ~~w 113 (115)
T cd00197 111 QLW 113 (115)
T ss_pred HHH
Confidence 443
No 312
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=31.32 E-value=4.1e+02 Score=25.33 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=63.5
Q ss_pred ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc-c--cC
Q 046417 137 LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG-A--RS 213 (595)
Q Consensus 137 ~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g-~--~~ 213 (595)
.|.-++..| +..-...|.+|.+||.. - +.-+.|.+.|+.-|+.+....|..++-.|.++.+..- . .+
T Consensus 9 ~F~~~L~~L-~aS~qSi~kaa~fAlk~--~-------~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~ 78 (139)
T PF12243_consen 9 QFTQLLRRL-NASQQSIQKAAQFALKN--R-------DMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYN 78 (139)
T ss_pred HHHHHHHHc-chhHHHHHHHHHHHHHc--c-------ccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhccccc
Confidence 344455555 33445577788887766 1 1233566666667777788888888888888777542 2 24
Q ss_pred cCcHHh---HHHHHHHhcc-CCC--HHHHHHHHHHHHHHHH
Q 046417 214 KGVLDW---LVPCLVEFLC-CDD--WATRKAAAEVLGKVAV 248 (595)
Q Consensus 214 ~~yl~~---lmp~L~e~L~-~dD--W~~RkaAaEaLgsIA~ 248 (595)
.+|... -+|.+++... ++. |.-++.+...|..+-.
T Consensus 79 ~~Yv~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~ 119 (139)
T PF12243_consen 79 YPYVSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWSK 119 (139)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHHH
Confidence 566544 4666666653 333 4777777777777644
No 313
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.27 E-value=5.8e+02 Score=31.41 Aligned_cols=97 Identities=20% Similarity=0.132 Sum_probs=62.0
Q ss_pred HHHhhhcCCCC-----hHHHHHHHHHH-HHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH
Q 046417 24 ITCLNKLADRD-----TLPVATAELES-IARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL 96 (595)
Q Consensus 24 l~~L~KL~DrD-----T~r~A~~~LD~-lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL 96 (595)
...|-||.|.= -.|.|+.-.+. -.+++++-. ..-|+.++.-...+-+|..|.-.++.||.++..-+++-
T Consensus 62 Ns~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipEfn---- 137 (970)
T KOG1988|consen 62 NSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPEFN---- 137 (970)
T ss_pred hHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhccccc----
Confidence 34555554421 35555554444 233565422 66788888888888889999999999999999998874
Q ss_pred HHHHHHHHhhccCC--ChhHHHHHHHHHHHhhh
Q 046417 97 SKMISTVSCRLRDP--DSSVRSACVAATTAMSL 127 (595)
Q Consensus 97 pkIL~~IvrrLkD~--ds~VR~Ac~~aLg~LA~ 127 (595)
-.+++++.--|+ +-.||.| +++...++.
T Consensus 138 --~~hhlIr~sl~S~helE~eaa-~~Aaa~Faa 167 (970)
T KOG1988|consen 138 --QVHHLIRISLDSHHELEVEAA-EFAAACFAA 167 (970)
T ss_pred --chhHHHHHHhcCccchhhHHH-HHHHhhhhh
Confidence 334566665555 4456644 445555553
No 314
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=31.04 E-value=5.5e+02 Score=29.76 Aligned_cols=63 Identities=24% Similarity=0.204 Sum_probs=38.7
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 046417 178 KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD 250 (595)
Q Consensus 178 ~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av 250 (595)
.|+.+++.+.=. +|.--.-+++-||+++..+...|.++.+++...=..| |+.-|||.+||.+.
T Consensus 514 sLlhHlc~~vVE-~FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrC---------KaSWe~L~~Iakhe 576 (817)
T KOG1925|consen 514 SLLHHLCSLVVE-TFPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRC---------KASWESLRSIAKHE 576 (817)
T ss_pred HHHHHHHHHHHH-hCCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHh---------hHHHHHHHHHHhhh
Confidence 455666555422 2222345688999999988888766666555543333 55667788887543
No 315
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=30.97 E-value=8.8e+02 Score=28.68 Aligned_cols=77 Identities=19% Similarity=0.050 Sum_probs=48.0
Q ss_pred HHHHhhhc--CCCChHHHHHHHHHHHHHhCC-cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccchhhHHH
Q 046417 23 VITCLNKL--ADRDTLPVATAELESIARTLT-QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSLSPHLSK 98 (595)
Q Consensus 23 vl~~L~KL--~DrDT~r~A~~~LD~lA~~L~-~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I~PhLpk 98 (595)
.|+-|.|. +|-. ++-|-+.|-.=...+. -+..++.|..|.++.++.....+-++|+-||..-.|.. +-+...|..
T Consensus 414 gl~~Ldkyly~de~-~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl~lL~P 492 (881)
T COG5110 414 GLETLDKYLYADES-YRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLELLQP 492 (881)
T ss_pred hHHHHHHHHhcCcc-cccccceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHHHHhhh
Confidence 67777775 3432 2222222221112222 34588999999999999889999999999998877765 444444443
Q ss_pred HH
Q 046417 99 MI 100 (595)
Q Consensus 99 IL 100 (595)
|+
T Consensus 493 i~ 494 (881)
T COG5110 493 IM 494 (881)
T ss_pred hh
Confidence 33
No 316
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=30.74 E-value=60 Score=21.96 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCC
Q 046417 71 SPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDP 110 (595)
Q Consensus 71 p~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ 110 (595)
|.+|.+++.+||.+ ++ +..++.+++.|+|+
T Consensus 1 ~~vR~~aa~aLg~~--~~--------~~a~~~L~~~l~d~ 30 (30)
T smart00567 1 PLVRHEAAFALGQL--GD--------EEAVPALIKALEDE 30 (30)
T ss_pred CHHHHHHHHHHHHc--CC--------HhHHHHHHHHhcCC
Confidence 56899999999987 22 24445566666653
No 317
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=30.04 E-value=7.1e+02 Score=26.61 Aligned_cols=232 Identities=16% Similarity=0.092 Sum_probs=112.6
Q ss_pred HHHHHHHhhhcCCCCh-HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc---------
Q 046417 20 KQRVITCLNKLADRDT-LPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG--------- 89 (595)
Q Consensus 20 k~rvl~~L~KL~DrDT-~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g--------- 89 (595)
-..+-..|.+++.... +..+..-.+.|.+. -+..|....++.++.....++++|..++.-.+
T Consensus 26 ~~~L~~~l~~ls~~~~~~~~g~~l~~~iL~~--------~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~ 97 (330)
T PF11707_consen 26 SSVLALLLKKLSSDLSFQSYGLELIRSILQN--------HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLR 97 (330)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHH--------HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3444455556665443 33333333333332 25555555555667778899999999998333
Q ss_pred --ccchhhHHHHHHHHHhhccCCC------hhHHHHHHHHHHHhhhhhcCCcch--------hccHHHHHHHhhcCChhH
Q 046417 90 --DSLSPHLSKMISTVSCRLRDPD------SSVRSACVAATTAMSLNITKPSFS--------VLSKPLIELILVEQDVNS 153 (595)
Q Consensus 90 --d~I~PhLpkIL~~IvrrLkD~d------s~VR~Ac~~aLg~LA~~l~~~~~~--------~~l~PLi~aLl~d~nk~V 153 (595)
|+-.+-|++++..=.+...+.. +.||.+...=+-.+-... .+.. .++.+++..|-.|....|
T Consensus 98 ~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~--~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v 175 (330)
T PF11707_consen 98 SFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSG--DPELKRDLLSQKKLMSALFKGLRKDPPETV 175 (330)
T ss_pred hcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccC--CHHHHHHHHHcCchHHHHHhcccCCCHHHH
Confidence 2212223333321111111110 288877765544444333 1111 145666666632222222
Q ss_pred HHHHHHHHH-HHHhcCCCc--h-HHHH-HHHHHHHHHhhccCch----hHHHHHHHHHHHHHH--hhcccCc--------
Q 046417 154 QVGGAMCLA-AAIDAAPNP--E-VEQL-RKLLPRLGKAVRIEGF----KAKAAVLGVIGSVVR--VGGARSK-------- 214 (595)
Q Consensus 154 Q~~AA~cLa-aviE~a~d~--~-~~~L-~~Ll~rL~klL~~~~~----kaK~alLsAIgSlA~--a~g~~~~-------- 214 (595)
. -.-.+|. .+++...-. . ..++ +..+.+|..+.++..- .+...+-+.+-.+.. ..|..|+
T Consensus 176 ~-~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~ 254 (330)
T PF11707_consen 176 I-LILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRE 254 (330)
T ss_pred H-HHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCc
Confidence 2 1112222 233322111 0 1233 3477888888877665 455555555554442 1132222
Q ss_pred --------------CcHHhHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 046417 215 --------------GVLDWLVPCLVEFLCC-DDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALE 266 (595)
Q Consensus 215 --------------~yl~~lmp~L~e~L~~-dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le 266 (595)
+....++-.+...+.- +|-. -.+.+-.|..++.+.+.+|...+-..++
T Consensus 255 ~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp~e~~~----q~~Lvl~Il~~~PeLva~Y~~~~~~~~~ 317 (330)
T PF11707_consen 255 SDSGVPVTINNKSFKINNKLLLNLLKKLKPWEDDR----QQELVLKILKACPELVAPYFNNLPYSLE 317 (330)
T ss_pred ccccccccccCCCCCcccHHHHHHHHHCCCCccHH----HHHHHHHHHHHChHHHHHHHHhhhhhCC
Confidence 1113344444445542 2211 3566888888899999999877544444
No 318
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=29.89 E-value=4.3e+02 Score=24.64 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc------c
Q 046417 35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL------R 108 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL------k 108 (595)
|--.-+++|-.+... ++..+.-++..|...++...+.++.-++++|-.+++..+....-.+.+=.. +++.+ -
T Consensus 17 ~pgy~~~Eia~~t~~-s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~-~Ik~~~~f~g~~ 94 (122)
T cd03572 17 TPGYLYEEIAKLTRK-SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSA-QIRECANYKGPP 94 (122)
T ss_pred CchHHHHHHHHHHHc-CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHH-HHHHHHHcCCCC
Confidence 555566777777766 445577788888777777668998999999998887665333333332222 22221 2
Q ss_pred CC------ChhHHHHHHHHHHHhh
Q 046417 109 DP------DSSVRSACVAATTAMS 126 (595)
Q Consensus 109 D~------ds~VR~Ac~~aLg~LA 126 (595)
|| ...||.+|-+.+..|-
T Consensus 95 Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 95 DPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred CcccCcchhHHHHHHHHHHHHHHh
Confidence 22 2347887777766553
No 319
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=29.87 E-value=1.5e+02 Score=26.38 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=33.6
Q ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHhccccchhhhhhhhhhhHHHHHHH
Q 046417 478 EDLSLIREQLLQIENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEI 529 (595)
Q Consensus 478 ~~~~~i~~ql~qie~qq~~l~~llq~fmg~s~~~m~~le~rv~gle~~~d~i 529 (595)
.-..-|++.+.+++.+...|-..||. +.-+|..|..||.+++++
T Consensus 42 ~~~~~l~~~~~~l~~k~~~l~~~l~~--------Id~Ie~~V~~LE~~v~~L 85 (99)
T PF10046_consen 42 DIAAGLEKNLEDLNQKYEELQPYLQQ--------IDQIEEQVTELEQTVYEL 85 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 34566788888888888777666664 678999999999887654
No 320
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=29.74 E-value=4.9e+02 Score=24.64 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=49.5
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH--HHHHHHHHHhhcc------CchhHHHHHHHHHHHHHHhh
Q 046417 139 KPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL--RKLLPRLGKAVRI------EGFKAKAAVLGVIGSVVRVG 209 (595)
Q Consensus 139 ~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L--~~Ll~rL~klL~~------~~~kaK~alLsAIgSlA~a~ 209 (595)
+-|..-| ...|+++|.-|-..|++.+++.+......+ ..++..|.+++.. .+..+|.-++..|.+-+.+-
T Consensus 41 rai~krl-~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 41 RLLAHKI-QSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3344444 578899999999999999999877553222 2466667777742 46778888888888877543
No 321
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=29.67 E-value=4.5e+02 Score=24.22 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH--HHHHHHHhhccC---C
Q 046417 36 LPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS--KMISTVSCRLRD---P 110 (595)
Q Consensus 36 ~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp--kIL~~IvrrLkD---~ 110 (595)
...-++-.|.+-.. +..--..+..|...+.+.+|.+...++.+|..++.-||..+..++. +.+-.+++.+.. .
T Consensus 18 ~~~il~icd~I~~~--~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~ 95 (133)
T cd03561 18 WALNLELCDLINLK--PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKY 95 (133)
T ss_pred HHHHHHHHHHHhCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCC
Confidence 33444445555433 2333445555655566678999999999999999999975533322 223334555544 4
Q ss_pred ChhHHHHHHHHHHHhhhhhcC
Q 046417 111 DSSVRSACVAATTAMSLNITK 131 (595)
Q Consensus 111 ds~VR~Ac~~aLg~LA~~l~~ 131 (595)
++.||.=+...+...+..+..
T Consensus 96 ~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 96 DPKVREKALELILAWSESFGG 116 (133)
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 778999999888888877753
No 322
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=28.20 E-value=7.1e+02 Score=26.06 Aligned_cols=121 Identities=13% Similarity=0.158 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHccccchhhHHHHHHHHHhh-ccCCChhHHHHHHHHHHHhhhhhcCCcchh-ccHHHHHHHhhcCChhH
Q 046417 76 QCVNLLTLLSRSHGDSLSPHLSKMISTVSCR-LRDPDSSVRSACVAATTAMSLNITKPSFSV-LSKPLIELILVEQDVNS 153 (595)
Q Consensus 76 aaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr-LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~aLl~d~nk~V 153 (595)
.+...|+.+|+.. =.++|.+|+..+.++ .+|.+.-++++|. .|.+++. +.+.. .+.=|++.| ...-.-+
T Consensus 134 ~~A~~La~~a~~~---~~~~La~il~~ya~~~fr~~~dfl~~v~~----~l~~~f~-P~~~~~~l~~Ll~lL-~n~~~w~ 204 (262)
T PF14225_consen 134 EIAEALAQVAEAQ---GLPNLARILSSYAKGRFRDKDDFLSQVVS----YLREAFF-PDHEFQILTFLLGLL-ENGPPWL 204 (262)
T ss_pred HHHHHHHHHHHhC---CCccHHHHHHHHHhcCCCCHHHHHHHHHH----HHHHHhC-chhHHHHHHHHHHHH-hCCcHHH
Confidence 4445555555443 446888888766654 6776666665552 3333332 11111 233344555 4455678
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh
Q 046417 154 QVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG 209 (595)
Q Consensus 154 Q~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~ 209 (595)
|...-..|..++...+-. .+...+++.-+.++|..+... .++..+-.+....
T Consensus 205 ~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~~~~---eAL~VLd~~v~~s 256 (262)
T PF14225_consen 205 RRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTDLWM---EALEVLDEIVTRS 256 (262)
T ss_pred HHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCccHH---HHHHHHHHHHhhc
Confidence 888888888888874221 236677888899999887764 4455555555443
No 323
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=27.58 E-value=4.4e+02 Score=25.19 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCC--------CChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc
Q 046417 36 LPVATAELESIARTLTQDSFSSFLNCLQTTDSS--------SKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL 107 (595)
Q Consensus 36 ~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss--------~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL 107 (595)
...+...+-.|+..|+...+-|++-.|.+-... .....+=.-.+++..+++.....+.||..-++..++..|
T Consensus 38 E~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L 117 (153)
T PF08146_consen 38 ESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLL 117 (153)
T ss_pred HHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677778888899877787777777665422 222333445667777888888888999999999888887
Q ss_pred cCCC
Q 046417 108 RDPD 111 (595)
Q Consensus 108 kD~d 111 (595)
+...
T Consensus 118 ~~~~ 121 (153)
T PF08146_consen 118 KQFN 121 (153)
T ss_pred HHhh
Confidence 6654
No 324
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=27.14 E-value=3.9e+02 Score=25.55 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcccCcCcHHhHHHHHHHhccC------CC----HHHHHHHHHHHHHHHHHh
Q 046417 200 GVIGSVVRVGGARSKGVLDWLVPCLVEFLCC------DD----WATRKAAAEVLGKVAVFD 250 (595)
Q Consensus 200 sAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~------dD----W~~RkaAaEaLgsIA~av 250 (595)
..+..++..-+..|.||+..++....+.|.. .+ |.++...+.+|.......
T Consensus 89 ~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~~~~~~~~~~~~~~~L~~~vL~~L~~~F~~D 149 (153)
T PF08146_consen 89 RLLNALAEKLKSLFTPYFSYLLDNAVDLLKQFNSSKTESKSKSWELWRLVLSTLQKCFLHD 149 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhc
Confidence 4444444444444578888888887777742 23 899998888888766543
No 325
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=27.08 E-value=5.7e+02 Score=27.47 Aligned_cols=129 Identities=16% Similarity=0.104 Sum_probs=84.7
Q ss_pred HHHHHh-c-CCCchHHHHHHHHHHHHHhhccC-chhHHHHHHHHHHHHHHhhcc-cCcCcHHhHHHHHHHhccCCCHHHH
Q 046417 161 LAAAID-A-APNPEVEQLRKLLPRLGKAVRIE-GFKAKAAVLGVIGSVVRVGGA-RSKGVLDWLVPCLVEFLCCDDWATR 236 (595)
Q Consensus 161 LaaviE-~-a~d~~~~~L~~Ll~rL~klL~~~-~~kaK~alLsAIgSlA~a~g~-~~~~yl~~lmp~L~e~L~~dDW~~R 236 (595)
|.++++ . .....+|.=..++-||.++|+-. .-.|..-+|+....|+...|. .+...+....|.|..++....-++|
T Consensus 35 L~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vk 114 (307)
T PF04118_consen 35 LLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVK 114 (307)
T ss_pred HHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhH
Confidence 444555 2 22223455567999999999765 334666678888888885543 3445566677888888887778899
Q ss_pred HHHHHHHHHHHHHhHHhHHHH----HHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417 237 KAAAEVLGKVAVFDKDLATEY----KRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 237 kaAaEaLgsIA~avge~f~py----~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~ 293 (595)
-..++.+-..-.-+|..+.|. ...++.-|| |--.-+-+-+..-|+.++..-+.
T Consensus 115 p~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLe----de~sE~~~~~~~ll~~l~~~v~~ 171 (307)
T PF04118_consen 115 PQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLE----DEGSEFFDRTLKLLDKLKEAVGD 171 (307)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHhccccc----cCCchHHHHHHHHHHHHHHhcCh
Confidence 888888877665555544444 344444455 45666777777777777766543
No 326
>PHA02836 putative transmembrane protein; Provisional
Probab=26.68 E-value=73 Score=30.31 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=45.4
Q ss_pred HHHHHhCCcCc-HHHHHHhhhhcCCCCChHH-HHHHHHHHHHHHHHcc-ccchhhHHHHHHHHHhhccCC
Q 046417 44 ESIARTLTQDS-FSSFLNCLQTTDSSSKSPV-RKQCVNLLTLLSRSHG-DSLSPHLSKMISTVSCRLRDP 110 (595)
Q Consensus 44 D~lA~~L~~~~-lp~fL~~L~d~~ss~kp~v-RKaaI~lLG~lAEg~g-d~I~PhLpkIL~~IvrrLkD~ 110 (595)
+.++..|.-+. ...+...|.+... ++.. ---.|=+||.++|-|| ..+..|++.||+.+...|.|.
T Consensus 74 ~lL~~dL~~~g~~~Rl~kfi~sn~n--~sy~~~LtLiG~~gyise~wGk~k~~kYI~~im~l~fnfl~dn 141 (153)
T PHA02836 74 NLLTSNLSKKGFISRFKKYLYSNYD--VSYVSALTLIGIIGYISECCGKYGLEKYIQDLLLLLFNFLDDN 141 (153)
T ss_pred hhhhcccCcccHHHHHHHHHHhccc--cccchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHcccc
Confidence 67777787555 6777777766322 1111 1134556788899998 677889999999999999874
No 327
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.47 E-value=4.4e+02 Score=37.13 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=99.0
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC---CcchhccHHHHHHHhh-------cCChhHHHHHHHHHHHHHhcC
Q 046417 99 MISTVSCRLRDPDSSVRSACVAATTAMSLNITK---PSFSVLSKPLIELILV-------EQDVNSQVGGAMCLAAAIDAA 168 (595)
Q Consensus 99 IL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~---~~~~~~l~PLi~aLl~-------d~nk~VQ~~AA~cLaaviE~a 168 (595)
++..|+..+...++.++.+...++..+...... .++..+..|++.+|+. ++.-+.+.|.+.+|..+++..
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~ 1064 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESM 1064 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhc
Confidence 467788888888888999988888887765432 1233477788888763 344556677777777788776
Q ss_pred CCch-HHHHHHHHHHHHHhhccC--------chhHHHHHHHHHHHHHHhhc--ccCcCcHHhHHHHHHHhccCCCHHHHH
Q 046417 169 PNPE-VEQLRKLLPRLGKAVRIE--------GFKAKAAVLGVIGSVVRVGG--ARSKGVLDWLVPCLVEFLCCDDWATRK 237 (595)
Q Consensus 169 ~d~~-~~~L~~Ll~rL~klL~~~--------~~kaK~alLsAIgSlA~a~g--~~~~~yl~~lmp~L~e~L~~dDW~~Rk 237 (595)
+..- ..+...++..+.-.|..- -..++-.+++.+.-+....+ ....-.+..++..+.-.|.+.+-.+|+
T Consensus 1065 ~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~ 1144 (3550)
T KOG0889|consen 1065 PSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVRE 1144 (3550)
T ss_pred hHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 5111 233344444444444221 11244444444433332111 111233466777777778888779999
Q ss_pred HHHHHHHHHHHHhH----HhHHHHHHH
Q 046417 238 AAAEVLGKVAVFDK----DLATEYKRS 260 (595)
Q Consensus 238 aAaEaLgsIA~avg----e~f~py~~~ 260 (595)
.+..+|..++...| +++.||++.
T Consensus 1145 ~~~~~L~~i~~~s~~~v~~L~~p~K~~ 1171 (3550)
T KOG0889|consen 1145 FSQKLLRLISELSGKSVVKLLEPFKDV 1171 (3550)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 99999999998775 355555543
No 328
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=26.42 E-value=84 Score=28.01 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=24.3
Q ss_pred ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh
Q 046417 90 DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI 129 (595)
Q Consensus 90 d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l 129 (595)
+.|.||.+.|+.+|...+.+-.+.||.-+...|.-+-+++
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~ 42 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHA 42 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHC
Confidence 4567777777777777766666666655554444444433
No 329
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=26.37 E-value=4.3e+02 Score=32.61 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=47.6
Q ss_pred CChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhc
Q 046417 69 SKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVE 148 (595)
Q Consensus 69 ~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d 148 (595)
-+|..|+.....+..++ ..|-|+--.+.=+--.+=||+.||.-|+..|-+|. ++.+..|+.+|+++| .
T Consensus 588 vkW~~redvAqmy~LL~------~Wp~l~v~~aleLLd~nypD~~VR~fAV~~L~~Ls----dd~l~~YLLqLVQal--K 655 (1076)
T KOG0904|consen 588 VKWNKREDVAQMYYLLK------DWPPLSVELALELLDCNYPDPNVRAFAVRCLEQLS----DDDLLQYLLQLVQAL--K 655 (1076)
T ss_pred eeeccHHHHHHHHHHHh------hCCCCCHHHHHHHhcCCCCcHHHHHHHHHHHHhcC----hhHHHHHHHHHHHHH--h
Confidence 46999999888888777 23333322221122233489999998887774444 344445999999999 3
Q ss_pred CChhHH
Q 046417 149 QDVNSQ 154 (595)
Q Consensus 149 ~nk~VQ 154 (595)
-+++.+
T Consensus 656 yEpyld 661 (1076)
T KOG0904|consen 656 YEPYLD 661 (1076)
T ss_pred ccchhH
Confidence 455555
No 330
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=26.17 E-value=32 Score=23.35 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=16.0
Q ss_pred HHHHHHHhhccCCChhHHHHH
Q 046417 98 KMISTVSCRLRDPDSSVRSAC 118 (595)
Q Consensus 98 kIL~~IvrrLkD~ds~VR~Ac 118 (595)
.|+|||...|+++|=.+|-|.
T Consensus 3 ~IVpyi~~~L~N~~LAl~lA~ 23 (24)
T PF09268_consen 3 NIVPYILNTLQNPDLALRLAS 23 (24)
T ss_dssp THHHHHHHTT--HHHHHHHHH
T ss_pred cchhHHHhccCCHHHHHHHhc
Confidence 689999999999998777664
No 331
>PF12531 DUF3731: DNA-K related protein ; InterPro: IPR021030 Proteins in this family are bacterial proteins of approximately 250 amino acids in length. There are two conserved sequence motifs: RPG and WRR. The proteins in this family are frequently annotated as DNA-K related proteins however there is little accompanying literature to confirm this.
Probab=26.13 E-value=1.2e+02 Score=31.82 Aligned_cols=69 Identities=16% Similarity=0.108 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC-Ccch-----hccHHHHHHHh
Q 046417 73 VRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK-PSFS-----VLSKPLIELIL 146 (595)
Q Consensus 73 vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~-~~~~-----~~l~PLi~aLl 146 (595)
.-.+.++++|.+=..-. .+=-++..-++++|+-+... .+.-||||+|+....- .+.. ..+...++.|+
T Consensus 97 ~~~emvRl~asLErL~~----~~K~elg~wll~rL~~~~~~--~~~wWAlGRlgaR~p~yGs~h~Vvp~~~~~~wl~~ll 170 (249)
T PF12531_consen 97 SYDEMVRLAASLERLPV----EDKIELGEWLLKRLQKPSES--AQHWWALGRLGARVPFYGSAHNVVPPEVAEQWLDALL 170 (249)
T ss_pred CHHHHHHHHHhhccCCH----HHHHHHHHHHHHHhcCCCCC--cchHHHHHHHHhcCcccCCcccccCHHHHHHHHHHHH
Confidence 34566777666533322 23335677888888877743 4455999999975421 1111 15566777776
Q ss_pred h
Q 046417 147 V 147 (595)
Q Consensus 147 ~ 147 (595)
.
T Consensus 171 ~ 171 (249)
T PF12531_consen 171 A 171 (249)
T ss_pred h
Confidence 5
No 332
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=25.78 E-value=5.7e+02 Score=24.10 Aligned_cols=108 Identities=11% Similarity=0.074 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCC-CCChHHHHHHHHHHHHHHHHccccchhhHH--HHHHH-HHhhccC--
Q 046417 36 LPVATAELESIARTLTQDSFSSFLNCLQTTDS-SSKSPVRKQCVNLLTLLSRSHGDSLSPHLS--KMIST-VSCRLRD-- 109 (595)
Q Consensus 36 ~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~s-s~kp~vRKaaI~lLG~lAEg~gd~I~PhLp--kIL~~-IvrrLkD-- 109 (595)
....++-.|.+-. +...-...+.+|..... +.++.+-..++.+|..++.-||..+..++. ..+.. +++.+.+
T Consensus 19 w~~ileicD~In~--~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~ 96 (141)
T cd03565 19 WGLNMEICDIINE--TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKN 96 (141)
T ss_pred HHHHHHHHHHHhC--CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccC
Confidence 4455666666644 22333344555554443 346778888999999999999976654332 33443 4555542
Q ss_pred -CChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHH
Q 046417 110 -PDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELI 145 (595)
Q Consensus 110 -~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aL 145 (595)
+...|+.-+..-+-..+..+...+...++.-+...|
T Consensus 97 ~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L 133 (141)
T cd03565 97 NPPTIVQEKVLALIQAWADAFRGSPDLTGVVEVYEEL 133 (141)
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHH
Confidence 445788888888888887664433222344444444
No 333
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=25.71 E-value=1.5e+03 Score=28.85 Aligned_cols=178 Identities=12% Similarity=0.051 Sum_probs=98.6
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF 134 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~ 134 (595)
+..+-..+...--+-.+.+|.+++.+|.-+-+.-+---. ..|+-..+..-.|+--+++.+...++..=..-+.++.-
T Consensus 470 vg~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~---~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~ 546 (1529)
T KOG0413|consen 470 VGVLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREA---FSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKK 546 (1529)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccch---HHHHHHhcCCccccchhHHHhchhhhhcccCccccccc
Confidence 333333333332233578999999988877766553222 26677777777788788888777665433332222100
Q ss_pred hh-ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhc-cCchhHHHHHHHHHHHHHHhhccc
Q 046417 135 SV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVR-IEGFKAKAAVLGVIGSVVRVGGAR 212 (595)
Q Consensus 135 ~~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~-~~~~kaK~alLsAIgSlA~a~g~~ 212 (595)
.. .+.|--+.+ .+. - +..+.++.. -.-..++.+|.+.++ .....+|.++...+-|.-.-...+
T Consensus 547 tt~~l~~~~~ii-~d~--------~--~~~~~~ge~----~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~ 611 (1529)
T KOG0413|consen 547 TTDLLLDEQQII-QDF--------K--LKLMNKGET----RVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEA 611 (1529)
T ss_pred chhhcCcchhhh-hhc--------c--hhhhhcccc----HHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchh
Confidence 00 111111111 011 0 111111110 122347777777776 445566666676666665443332
Q ss_pred CcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Q 046417 213 SKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD 252 (595)
Q Consensus 213 ~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge 252 (595)
..|+..+-.|++.-.+..-.+|+.+++.|+.+...-..
T Consensus 612 --~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr 649 (1529)
T KOG0413|consen 612 --SKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPR 649 (1529)
T ss_pred --hcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCch
Confidence 33555677777777788888899999999988665433
No 334
>PRK09169 hypothetical protein; Validated
Probab=25.57 E-value=1.9e+03 Score=30.21 Aligned_cols=244 Identities=15% Similarity=0.159 Sum_probs=128.0
Q ss_pred hHHHHHHHHHhhhcCCCChHHHHHHHHH-H------HHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHH--
Q 046417 17 NDLKQRVITCLNKLADRDTLPVATAELE-S------IARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRS-- 87 (595)
Q Consensus 17 ~~lk~rvl~~L~KL~DrDT~r~A~~~LD-~------lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg-- 87 (595)
++|- +++..|.|..|.+-.+-|+..|- . +-..+++..+...|..|.--. ....-|+++..+.+.|++.
T Consensus 667 Q~La-N~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp--~~~acr~A~~~LA~rL~~~~~ 743 (2316)
T PRK09169 667 QGLA-NALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWP--EEEACRAAAEALAGRLAADAD 743 (2316)
T ss_pred HHHH-HHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhcc--CccHHHHHHHHHHHHHhcChH
Confidence 3444 45578999998887777776662 2 234566666777777776432 2234566666666666652
Q ss_pred -ccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC--cchhccHHHHHHHhhcCChhHHHHHHHHHHHH
Q 046417 88 -HGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP--SFSVLSKPLIELILVEQDVNSQVGGAMCLAAA 164 (595)
Q Consensus 88 -~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~--~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaav 164 (595)
...+-...|...+-.+-+-..+ .+|..+.-.|+..+... ++..| +-.--.-.+.+|+.+
T Consensus 744 l~~a~~aQ~lAnsLNaLsKwp~~------~~c~~a~~~La~~lg~~~~p~~~f------------~~~~laq~aNa~aR~ 805 (2316)
T PRK09169 744 LRQAMNPQGLANSLNALSKWPQE------PACQQAALLLAERLGSAGLPFRTF------------TMAGLAQLANAMARL 805 (2316)
T ss_pred HHhhcCHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccCCCchhhc------------CHHHHHHHHHHHHHH
Confidence 2233344555555555555432 23333444444444221 11111 101112345667887
Q ss_pred HhcCC----CchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcc-----cCcCcHHhHHHHHHHhccCCCHHH
Q 046417 165 IDAAP----NPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGA-----RSKGVLDWLVPCLVEFLCCDDWAT 235 (595)
Q Consensus 165 iE~a~----d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~-----~~~~yl~~lmp~L~e~L~~dDW~~ 235 (595)
+..+. +.........+..|...|+--.-..-.+-..-|+.|+-+-+. .+.++....+..|...-.+...
T Consensus 806 ~~~~~~~~~~~~~~~~~~~L~~LA~hL~~~~~~~~~a~~~~i~~ifKalas~~l~d~lr~La~~gL~Rl~~L~~~t~~-- 883 (2316)
T PRK09169 806 ILKLEDQDDEEDLALARARLRELAAHLDLRPERLEQADARDIAVLFKALASARLKDGLRLLARPGLNRLATLHRATGF-- 883 (2316)
T ss_pred HhhccccccchhhHHHHHHHHHHHHHhccCchhhhhccchhHHHHHHHHHhccchhhhhhhhHHHHHHHHHHhhccCC--
Confidence 75431 112234455666666666433211112222345555543221 1223333344445444333332
Q ss_pred HHHHHHHHHHHHHHh----H-HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417 236 RKAAAEVLGKVAVFD----K-DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 236 RkaAaEaLgsIA~av----g-e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~ 291 (595)
|---+|+||.++..+ . .-+.+|...++++|+.. .-.+.+.|+++-+-.
T Consensus 884 r~~~LEt~g~L~~gLLPlaRspeL~~~r~~aLr~l~~~--------Qp~varki~~y~~~~ 936 (2316)
T PRK09169 884 REDNLETLGNLCAGLLPLARSPELKAHRADALRLLERL--------QPIVARKIELYLRAH 936 (2316)
T ss_pred CCCcHhHHHHHHhhhcccccChhhHHhHHHHHHHHhhh--------cHHHHHHHHHHhccc
Confidence 555689999998865 1 34777999999999843 345677777776544
No 335
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=25.36 E-value=6.2e+02 Score=24.38 Aligned_cols=44 Identities=16% Similarity=0.006 Sum_probs=36.1
Q ss_pred cCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHH
Q 046417 214 KGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEY 257 (595)
Q Consensus 214 ~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py 257 (595)
......++|.+...|.+..=.-...|+++|..|....|+.+..+
T Consensus 64 Ld~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I~~~ 107 (164)
T PF13925_consen 64 LDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVIRSN 107 (164)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788999999998877888999999999999888766644
No 336
>PF12531 DUF3731: DNA-K related protein ; InterPro: IPR021030 Proteins in this family are bacterial proteins of approximately 250 amino acids in length. There are two conserved sequence motifs: RPG and WRR. The proteins in this family are frequently annotated as DNA-K related proteins however there is little accompanying literature to confirm this.
Probab=25.15 E-value=8.2e+02 Score=25.72 Aligned_cols=188 Identities=18% Similarity=0.168 Sum_probs=102.2
Q ss_pred Hccccchh-hHHHHHHHHHhhccCC-ChhHHHHHHHHH-HHhhhhhcCCcchhccHHHHHHHhhcC--Chh----HHHHH
Q 046417 87 SHGDSLSP-HLSKMISTVSCRLRDP-DSSVRSACVAAT-TAMSLNITKPSFSVLSKPLIELILVEQ--DVN----SQVGG 157 (595)
Q Consensus 87 g~gd~I~P-hLpkIL~~IvrrLkD~-ds~VR~Ac~~aL-g~LA~~l~~~~~~~~l~PLi~aLl~d~--nk~----VQ~~A 157 (595)
|+|+.+-. -+.++.+.+-..++.+ +..|+.- -|++ -++|.-+.......++..+...|.... ++. ++..+
T Consensus 19 GfG~~lD~wRv~qlW~l~~~g~q~~~~~q~w~e-wW~lWRRiAGGL~~~qQ~~l~~~ia~~l~p~~~~~~~~~~~~~~~~ 97 (249)
T PF12531_consen 19 GFGDPLDDWRVEQLWKLYQQGIQFPKDAQVWSE-WWTLWRRIAGGLNEGQQEQLFDDIAPYLQPAAQRNRKKPKGPQPQS 97 (249)
T ss_pred CCCCCccHHHHHHHHHHhhcccCCCCcchHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHhCcccccccccccccCccC
Confidence 55666644 4889999999999988 6666522 1222 344433321111125566666663211 111 11111
Q ss_pred HHH---HHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH---hhcccCcCcHHhHHHHHHHhccCC
Q 046417 158 AMC---LAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR---VGGARSKGVLDWLVPCLVEFLCCD 231 (595)
Q Consensus 158 A~c---LaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~---a~g~~~~~yl~~lmp~L~e~L~~d 231 (595)
.-- |++..|..+. +.=-+|...|++-|..+... .+..=|||-|+. ..|....-.-+..+....+.|-..
T Consensus 98 ~~emvRl~asLErL~~---~~K~elg~wll~rL~~~~~~--~~~wWAlGRlgaR~p~yGs~h~Vvp~~~~~~wl~~ll~~ 172 (249)
T PF12531_consen 98 YDEMVRLAASLERLPV---EDKIELGEWLLKRLQKPSES--AQHWWALGRLGARVPFYGSAHNVVPPEVAEQWLDALLAL 172 (249)
T ss_pred HHHHHHHHHhhccCCH---HHHHHHHHHHHHHhcCCCCC--cchHHHHHHHHhcCcccCCcccccCHHHHHHHHHHHHhc
Confidence 111 4444454433 23334555555556655543 233456776664 112221111133455555555667
Q ss_pred CHHHHHHHHHHHHHHHHHhHH----hHHHHHHHHHHHHHhccCCc--hHHHHHHH
Q 046417 232 DWATRKAAAEVLGKVAVFDKD----LATEYKRSCLAALETRRFDK--VKIVRETM 280 (595)
Q Consensus 232 DW~~RkaAaEaLgsIA~avge----~f~py~~~~I~~Le~crfDK--VK~VRda~ 280 (595)
||.....|+-++.-||...|+ .-......+++.|+..+-.. +..|++.+
T Consensus 173 dwk~~~~a~fA~~q~aR~TgDR~rDl~~~~R~~v~~~L~~~~ap~~w~~~V~ev~ 227 (249)
T PF12531_consen 173 DWKKPPPAAFAAVQMARMTGDRARDLPDALRQKVIEKLKASKAPESWIAMVREVV 227 (249)
T ss_pred CCCCCchHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Confidence 799999999999999999875 33556678888888765443 25566553
No 337
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.62 E-value=6.1e+02 Score=30.23 Aligned_cols=189 Identities=12% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHhC--CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChh--HHHHH
Q 046417 43 LESIARTL--TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSS--VRSAC 118 (595)
Q Consensus 43 LD~lA~~L--~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~--VR~Ac 118 (595)
|-.++..+ .|+.=-..|.-|.+...++++.+||-++.. |-+.+-|.|=- |-++-+.+-+-. ++...
T Consensus 194 IA~l~s~llenPE~N~~~L~~l~eml~s~n~~~~Kl~~lS---LlaVFKDIiP~-------YkIR~lte~Ek~~k~sKev 263 (704)
T KOG2153|consen 194 IASLCSKLLENPEENLKKLKELFEMLDSQNPKAKKLALLS---LLAVFKDIIPG-------YKIRPLTEKEKRTKLSKEV 263 (704)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHhhhchHHHHHHHHH---HHHHHHhhccc-------ceecccHHHHhcccccHHH
Q ss_pred HHH-------HHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc
Q 046417 119 VAA-------TTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG 191 (595)
Q Consensus 119 ~~a-------Lg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~ 191 (595)
... |-++..++ +.+..+++-+ .+...+-...-.-|..|+..+++.++..- |.+++..-++.+++++.
T Consensus 264 ~klr~yE~~Ll~~Yk~yl--QkLe~~vK~~--~~~~~~~v~l~~vav~c~~~Ll~a~pHFN--~~~kiv~l~vr~in~~~ 337 (704)
T KOG2153|consen 264 LKLREYEQALLKQYKSYL--QKLEQFVKDL--SLRTPQQVSLAQVAVQCACELLEAVPHFN--LRQKIVKLVVRLINDPG 337 (704)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHhhh--hhcchHHHHHHHHHHHHHHHHHHhhhhcc--HHHHHHHHHHHhhcCCC
Q ss_pred hhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCC
Q 046417 192 FKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFD 271 (595)
Q Consensus 192 ~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfD 271 (595)
..+..++++++.+++ ++-..-..++.++--|...+...--++.+.|+.+|.+.|+|
T Consensus 338 ~~~s~~~i~t~k~lf------------------------~~D~~g~~sl~~Vr~i~~llK~rn~~v~~~~~~~~lsLri~ 393 (704)
T KOG2153|consen 338 RPVSSGCIQTIKTLF------------------------ENDNGGSGSLAIVRIINSLLKTRNYEVLPDMITTFLSLRID 393 (704)
T ss_pred CchHHHHHHHHHHHh------------------------cCCCccchhHHHHHHHHHHhhhhcccchhhHHHHHHhcchh
No 338
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=24.40 E-value=1.7e+02 Score=28.01 Aligned_cols=53 Identities=26% Similarity=0.377 Sum_probs=37.7
Q ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHhccccchh----hhhhhhhhhHHHHHHHH
Q 046417 478 EDLSLIREQLLQIENQQSSLFDLLQRFIGSSQSGMN----SLETRVHGLEMALDEIS 530 (595)
Q Consensus 478 ~~~~~i~~ql~qie~qq~~l~~llq~fmg~s~~~m~----~le~rv~gle~~~d~is 530 (595)
+=|..||-|..||=.|=+.+.|.+|.=.+.-..-+. .+++|+..|..+|++.-
T Consensus 20 nvLnaIr~qn~~i~aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~al 76 (140)
T PF04513_consen 20 NVLNAIRLQNVQIAAQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDAL 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999988864444443333 36667666666665543
No 339
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=24.25 E-value=1.8e+02 Score=28.67 Aligned_cols=60 Identities=20% Similarity=0.207 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHH
Q 046417 40 TAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVS 104 (595)
Q Consensus 40 ~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Iv 104 (595)
+.+.-.+....++-.....|..|..... ++.+|+.||..|..+. .+-+.-||++++..+-
T Consensus 56 v~e~~~lL~~W~~i~~~~aLeLL~~~f~--d~~VR~yAV~~L~~~s---d~eL~~yL~QLVQaLK 115 (171)
T cd00872 56 VAQMYQLLKRWPKLKPEQALELLDCNFP--DEHVREFAVRCLEKLS---DDELLQYLLQLVQVLK 115 (171)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHCCCcCC--CHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHH
Confidence 4455556666666567777888887664 4899999999876543 3667778887776543
No 340
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=24.19 E-value=52 Score=31.89 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=52.7
Q ss_pred CCCCCCcchHHHHHHHHHHHHHhhHHHHHH---HHHHhccccchhhhhhhhhhhHHHHHHHHHHHhh
Q 046417 472 DYPKDPEDLSLIREQLLQIENQQSSLFDLL---QRFIGSSQSGMNSLETRVHGLEMALDEISYDLAL 535 (595)
Q Consensus 472 ~~~~~~~~~~~i~~ql~qie~qq~~l~~ll---q~fmg~s~~~m~~le~rv~gle~~~d~is~dl~~ 535 (595)
+...+.+++-.|-.-+..|||+=-++=+++ .|-.+.+-+.+.-||+||--|++-++..|+|+-.
T Consensus 38 e~g~dne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Np 104 (157)
T COG3352 38 ENGIDNEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNP 104 (157)
T ss_pred ccCCChHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344566999999999999999876554443 4777888899999999999999999999999854
No 341
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=24.08 E-value=1.5e+02 Score=28.20 Aligned_cols=29 Identities=28% Similarity=0.171 Sum_probs=23.2
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 046417 219 WLVPCLVEFLCCDDWATRKAAAEVLGKVA 247 (595)
Q Consensus 219 ~lmp~L~e~L~~dDW~~RkaAaEaLgsIA 247 (595)
..+..|..+|.+.+..+|..|+|.|+.|.
T Consensus 158 ~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 158 DSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999875
No 342
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=23.86 E-value=9.1e+02 Score=25.79 Aligned_cols=114 Identities=6% Similarity=-0.013 Sum_probs=73.7
Q ss_pred ccHHHHHHHhhc---C-----ChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccC---chhHHHHHHHHHHHH
Q 046417 137 LSKPLIELILVE---Q-----DVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIE---GFKAKAAVLGVIGSV 205 (595)
Q Consensus 137 ~l~PLi~aLl~d---~-----nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~---~~kaK~alLsAIgSl 205 (595)
+++||++++++| . ++.|=.-.+..+.++.+...+.+..+++.+......+++.+ -...+......++++
T Consensus 68 ~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i 147 (319)
T PF08767_consen 68 FIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAI 147 (319)
T ss_dssp THHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHH
Confidence 899999988763 2 23232333333444444445555567777777777788654 234667777888887
Q ss_pred HHhhcc----cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 046417 206 VRVGGA----RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD 250 (595)
Q Consensus 206 A~a~g~----~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av 250 (595)
....-. .-...+..++.++.-.+.+.+-..-..++++|..+..-+
T Consensus 148 ~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~ 196 (319)
T PF08767_consen 148 NEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNV 196 (319)
T ss_dssp HHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 764311 113456777778877777888888888899888887755
No 343
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=23.64 E-value=1.1e+02 Score=22.15 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHH
Q 046417 76 QCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVR 115 (595)
Q Consensus 76 aaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR 115 (595)
.++..||.+..|+++. +++..+..-+.|.+..++
T Consensus 1 gA~lgLGl~~aGs~~~------~~~~~L~~~l~~~~~~~~ 34 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNE------EVLDLLRPYLSDTSNEMI 34 (35)
T ss_dssp HHHHHHHHHTTTT--H------HHHHHHHHHHCTSSHHHH
T ss_pred CcHHHHHHHHcCCCCH------HHHHHHHHHHHhcccccc
Confidence 4788999999999874 566677777788877665
No 344
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=23.47 E-value=1.4e+03 Score=27.68 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHccccchhhHHHHHHHHHh---hccCCChhHHHHHHHHHHHhhh
Q 046417 77 CVNLLTLLSRSHGDSLSPHLSKMISTVSC---RLRDPDSSVRSACVAATTAMSL 127 (595)
Q Consensus 77 aI~lLG~lAEg~gd~I~PhLpkIL~~Ivr---rLkD~ds~VR~Ac~~aLg~LA~ 127 (595)
.+-.||-+|..|++-|..-|=+|+.--+. .-.+++...+.|++==|-++|.
T Consensus 5 vvGILghla~~H~~~Ir~all~mf~~sl~~~~~~~~~~~~~~~atVPFlLqla~ 58 (696)
T PF14838_consen 5 VVGILGHLASSHSQDIRKALLEMFHESLAESSTDSEGDKQQKKATVPFLLQLAS 58 (696)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHhhccccCCCCChhhhhhhhHHHHHHHh
Confidence 45678888888888887755555443331 1124455677777644444443
No 345
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.10 E-value=1.3e+03 Score=33.07 Aligned_cols=170 Identities=19% Similarity=0.150 Sum_probs=102.6
Q ss_pred CCChHHHHHHHHHHHHHh----CC-cCc------HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccchhhHHHH
Q 046417 32 DRDTLPVATAELESIART----LT-QDS------FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSLSPHLSKM 99 (595)
Q Consensus 32 DrDT~r~A~~~LD~lA~~----L~-~~~------lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I~PhLpkI 99 (595)
+......+...|..+-.. |+ ++. +..|++-+...--++.|+.|+.++..++.+.+.-+ ..+..+.-.+
T Consensus 997 ~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~ 1076 (3550)
T KOG0889|consen 997 NSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDI 1076 (3550)
T ss_pred chhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHH
Confidence 445777777777765443 33 222 33445555444455679999999999999998887 4456677788
Q ss_pred HHHHHhhccCCChhHHH----HHHHHHHHhhhhhc-C---C-----cchhccHHHHHHHhhcCChhHHHHHHHHHHHHHh
Q 046417 100 ISTVSCRLRDPDSSVRS----ACVAATTAMSLNIT-K---P-----SFSVLSKPLIELILVEQDVNSQVGGAMCLAAAID 166 (595)
Q Consensus 100 L~~IvrrLkD~ds~VR~----Ac~~aLg~LA~~l~-~---~-----~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE 166 (595)
+..+.-.|+|-...+-. -|-+.+-.+-..+. + . ....++.|++-.|+ +.|..|-..+--+|...-|
T Consensus 1077 ~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~-npN~~VR~~~~~~L~~i~~ 1155 (3550)
T KOG0889|consen 1077 LKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELF-NPNSDVREFSQKLLRLISE 1155 (3550)
T ss_pred hhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHH
Confidence 88888888886554432 22223222222211 1 1 11237888888885 6777888888888998888
Q ss_pred cCCCchHHHHH----HH-HHHHHHhhccCchhHHHHHHHHH
Q 046417 167 AAPNPEVEQLR----KL-LPRLGKAVRIEGFKAKAAVLGVI 202 (595)
Q Consensus 167 ~a~d~~~~~L~----~L-l~rL~klL~~~~~kaK~alLsAI 202 (595)
..+..+...+. -| .|.+.+.+..-.+.+.-..++++
T Consensus 1156 ~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~ 1196 (3550)
T KOG0889|consen 1156 LSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAI 1196 (3550)
T ss_pred HcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHH
Confidence 86443332222 22 35555555555554444444444
No 346
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=23.04 E-value=6.5e+02 Score=23.84 Aligned_cols=75 Identities=15% Similarity=0.086 Sum_probs=52.1
Q ss_pred HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHH--HHHHHHHHhccCCc-hHHHHHHHHHHHHHhHhcCC
Q 046417 218 DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYK--RSCLAALETRRFDK-VKIVRETMNRSLEMWKEVPG 292 (595)
Q Consensus 218 ~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~--~~~I~~Le~crfDK-VK~VRda~~~aL~~~K~i~~ 292 (595)
..++..|...+.+.+=.+-..|+..|-+++.-+|..|.... ..++..|...=.++ -..|++-+.+.|+.|..-..
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 45666777777776666667799999999999997655432 23333333333343 37899999999999997664
No 347
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=22.98 E-value=1.3e+03 Score=28.11 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHhhhcCCCChHHHHHHHHHHHH
Q 046417 16 TNDLKQRVITCLNKLADRDTLPVATAELESIA 47 (595)
Q Consensus 16 ~~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA 47 (595)
.+.|+.+|..+||||+|..-.++++.-=..++
T Consensus 316 l~rl~rkv~g~LNKLSdaNi~~I~~~i~~Ly~ 347 (822)
T KOG2141|consen 316 LQRLRRKVNGSLNKLSDANIIKIIAGIAELYM 347 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999887766554333343
No 348
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=22.14 E-value=57 Score=30.08 Aligned_cols=15 Identities=53% Similarity=0.831 Sum_probs=13.0
Q ss_pred hhhhhhhHHHHHHHH
Q 046417 516 ETRVHGLEMALDEIS 530 (595)
Q Consensus 516 e~rv~gle~~~d~is 530 (595)
+.||.|||.||+++-
T Consensus 42 ~~rv~GLe~AL~~v~ 56 (115)
T PF06476_consen 42 QHRVAGLEKALEEVK 56 (115)
T ss_pred HHHHHHHHHHHHHHH
Confidence 469999999999983
No 349
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=21.82 E-value=2.2e+02 Score=27.01 Aligned_cols=65 Identities=18% Similarity=0.432 Sum_probs=43.6
Q ss_pred HHHHHhhhcC--CCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc
Q 046417 22 RVITCLNKLA--DRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH 88 (595)
Q Consensus 22 rvl~~L~KL~--DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~ 88 (595)
|++.++.++- +.|...++-..|+.+...|+.+++..+|.++.+-..+.+.. .-|=..|..|-..+
T Consensus 28 ~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir~WNTNsr~~--~vAQ~vL~~il~~~ 94 (141)
T PF08625_consen 28 RLLKILKDLLETEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIRDWNTNSRTS--HVAQRVLNAILKSH 94 (141)
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHhcCHHHHHHHHHHHHHhhcccccH--HHHHHHHHHHHHhC
Confidence 5566666654 34444559999999999999999999999999876554432 23333334444444
No 350
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=21.66 E-value=2e+02 Score=29.00 Aligned_cols=59 Identities=27% Similarity=0.336 Sum_probs=32.2
Q ss_pred HHHHHHhhHHHHHH-------HHHHhccccchhhhhhhhhhhHHHHHHHHHHHhhhcCcccCCCcccCc-ccCCC
Q 046417 488 LQIENQQSSLFDLL-------QRFIGSSQSGMNSLETRVHGLEMALDEISYDLALSNGRILNNNAAENT-CCKLP 554 (595)
Q Consensus 488 ~qie~qq~~l~~ll-------q~fmg~s~~~m~~le~rv~gle~~~d~is~dl~~s~gr~~~~~~~~~~-c~~~~ 554 (595)
..|=.||++|++.. |-=.=+..+|+..|+.||..||.-+++.. .|.. . ++.... +|-.|
T Consensus 17 ~~i~q~~~~ll~~~e~~~~lL~l~v~gik~~V~~L~aRV~alE~~l~dq~-ll~~----w---GC~~k~~iC~T~ 83 (204)
T PF00517_consen 17 NGIVQQQSNLLRAQEAQQHLLQLTVWGIKQGVKQLQARVLALERYLKDQQ-LLNI----W---GCSGKQHICHTP 83 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-SB----S---S-SSSS-S--B-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhHH-HHHh----c---ccCCCcceeCCC
Confidence 34444444444443 43344566778889999999999887643 2222 2 345455 67644
No 351
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=21.50 E-value=3.5e+02 Score=25.68 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=48.7
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhccc--CcC
Q 046417 138 SKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR--SKG 215 (595)
Q Consensus 138 l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~--~~~ 215 (595)
+.-++..|+...+..+|..|--||-+.=+ +++.+.-.+|..+++...|+ . .+.++....+.. -..
T Consensus 18 l~~~~~~LL~~~d~~vQklAL~cll~~k~-------~~l~pY~d~L~~Lldd~~fr--d----eL~~f~~~~~~~~I~~e 84 (141)
T PF07539_consen 18 LYDALLRLLSSRDPEVQKLALDCLLTWKD-------PYLTPYKDNLENLLDDKTFR--D----ELTTFNLSDESSVIEEE 84 (141)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHhHHHHHHHHcCcchHH--H----HHHhhcccCCcCCCCHH
Confidence 34445566688999999988888776432 46777778888999887764 2 333333322211 122
Q ss_pred cHHhHHHHHHHhc
Q 046417 216 VLDWLVPCLVEFL 228 (595)
Q Consensus 216 yl~~lmp~L~e~L 228 (595)
.=+.+||.+...|
T Consensus 85 hR~~l~pvvlRIL 97 (141)
T PF07539_consen 85 HRPELMPVVLRIL 97 (141)
T ss_pred HHhHHHHHHHHHH
Confidence 3355677776665
No 352
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=21.18 E-value=1.4e+03 Score=27.14 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc-----ccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417 174 EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG-----ARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAV 248 (595)
Q Consensus 174 ~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g-----~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~ 248 (595)
|+-..++.+|-.+|..+.+ |..+|..+|.++..-. +...++|..++-+| ..|.+-.+--.|+-+|-.+--
T Consensus 66 P~~K~~~~~l~~~~~~~~~--Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L---~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 66 PHDKHLFDKLNDYFVKPSY--RLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCL---QFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred ccHHHHHHHHHHHHcCchh--HHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHH---hhcccHHHHHHHHHHHHHHhc
Confidence 3445677777777766654 4566778887776321 22334444444444 235565555566666655544
Q ss_pred HhHHhHHHHHHHHHHH
Q 046417 249 FDKDLATEYKRSCLAA 264 (595)
Q Consensus 249 avge~f~py~~~~I~~ 264 (595)
.+...+.+|.+.++.+
T Consensus 141 ~ip~~l~~~L~~Lf~I 156 (668)
T PF04388_consen 141 HIPSSLGPHLPDLFNI 156 (668)
T ss_pred cccchhhHHHHHHHHH
Confidence 4434444444444443
No 353
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=21.01 E-value=3.5e+02 Score=31.54 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCCh-HHHHHHHHHHHHHHHHcc-ccc-hhhHHHHHHHHHhhccCCChhHH
Q 046417 39 ATAELESIARTLTQDSFSSFLNCLQTTDSSSKS-PVRKQCVNLLTLLSRSHG-DSL-SPHLSKMISTVSCRLRDPDSSVR 115 (595)
Q Consensus 39 A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp-~vRKaaI~lLG~lAEg~g-d~I-~PhLpkIL~~IvrrLkD~ds~VR 115 (595)
-+.-+..+...+.++.+..++.++.....+..| .+|-+...-|+.+++... ... .+-+|.+....--.|+|.+..|+
T Consensus 461 lL~l~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~ 540 (559)
T PF14868_consen 461 LLSLLSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLH 540 (559)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHH
Confidence 344445566667788888888888776633333 567777777777776653 222 24455666666678999999999
Q ss_pred HHHHHHHHHhhhhhc
Q 046417 116 SACVAATTAMSLNIT 130 (595)
Q Consensus 116 ~Ac~~aLg~LA~~l~ 130 (595)
+-+.+|.|.||+...
T Consensus 541 q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 541 QHALEAFGQFAERTS 555 (559)
T ss_pred HHHHHHHHHHhccCC
Confidence 999999999998764
No 354
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=20.97 E-value=8.5e+02 Score=24.40 Aligned_cols=35 Identities=6% Similarity=0.016 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHhhhhhcC---C--cc-hhccHHHHHHHh
Q 046417 112 SSVRSACVAATTAMSLNITK---P--SF-SVLSKPLIELIL 146 (595)
Q Consensus 112 s~VR~Ac~~aLg~LA~~l~~---~--~~-~~~l~PLi~aLl 146 (595)
+.+-..+|..|..+-.+=-. . +. ...+.-|+..|.
T Consensus 52 ~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~~LL~~l~ 92 (223)
T PF10441_consen 52 PSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQRLLRCLF 92 (223)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHHHHHHHHH
Confidence 34666777777666633211 1 11 125556666665
No 355
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=20.57 E-value=1.1e+03 Score=28.34 Aligned_cols=148 Identities=17% Similarity=0.245 Sum_probs=89.7
Q ss_pred ChhHHHHHHHHHhhhcCCCC----hHHHHHHHHHH-HHHhCC---cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHH
Q 046417 15 STNDLKQRVITCLNKLADRD----TLPVATAELES-IARTLT---QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSR 86 (595)
Q Consensus 15 ~~~~lk~rvl~~L~KL~DrD----T~r~A~~~LD~-lA~~L~---~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAE 86 (595)
+-+.+|.=|.+..-+-+.+| +++.-++.||. +++.+- |..-|.|++-|....+ ..-.+=+.-+..|-.+.|
T Consensus 86 ~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~-~s~~vCeNnmivLklLsE 164 (1053)
T COG5101 86 MRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQ-ISMEVCENNMIVLKLLSE 164 (1053)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhcc-chHHHHhccHHHHHHhHH
Confidence 44677888888887777444 77888888887 444443 4458888888876543 234555666666666665
Q ss_pred Hccc----------------cchhhHHHHHHHHHhhccC-CChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhhc
Q 046417 87 SHGD----------------SLSPHLSKMISTVSCRLRD-PDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILVE 148 (595)
Q Consensus 87 g~gd----------------~I~PhLpkIL~~IvrrLkD-~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d 148 (595)
--=| .+.-..|+|...+-.-|.- .++++-.|+..++-++.+|+ |.. .|...+++.++..
T Consensus 165 EvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wi---Pl~yIfeTnIieLv~~~ 241 (1053)
T COG5101 165 EVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWI---PLDYIFETNIIELVLEH 241 (1053)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhC---chhHHHHHHHHHHHHHH
Confidence 4322 2222234444443333322 47789999999999999999 332 4666666666442
Q ss_pred --CChhHHHHHHHHHHHHHh
Q 046417 149 --QDVNSQVGGAMCLAAAID 166 (595)
Q Consensus 149 --~nk~VQ~~AA~cLaaviE 166 (595)
..+....+-..||..+++
T Consensus 242 f~s~pd~r~~tl~CLtEi~~ 261 (1053)
T COG5101 242 FNSMPDTRVATLSCLTEIVD 261 (1053)
T ss_pred hccCCchhHHHHHHHHHHHh
Confidence 233333444455555544
No 356
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=20.54 E-value=1.1e+03 Score=25.58 Aligned_cols=192 Identities=10% Similarity=0.110 Sum_probs=105.2
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc---hhcc----HHHHHHHhhcCChhHHHHHHHHHHHHHhcCCC
Q 046417 98 KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF---SVLS----KPLIELILVEQDVNSQVGGAMCLAAAIDAAPN 170 (595)
Q Consensus 98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~---~~~l----~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d 170 (595)
.++..++..|..=+-..|.-++.-.+.+-++-..... ..|+ +-++..|+..-+ -+..|..|=..+-|.+..
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~ 153 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKH 153 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhh
Confidence 4445566666666666777666665555555433211 1111 224444432111 112233333334444444
Q ss_pred ch-HHHH--HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh----cccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHH
Q 046417 171 PE-VEQL--RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG----GARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVL 243 (595)
Q Consensus 171 ~~-~~~L--~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~----g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaL 243 (595)
.. ..++ ....-+|++..+.++|.+-.-+...+..+...- ..-+...++.+.......|.+++.-+|..++..|
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL 233 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL 233 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence 32 2222 235567888889999986655555554444321 1112344577888888999999999999999999
Q ss_pred HHHHHHh--HHhHHHHH--HHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417 244 GKVAVFD--KDLATEYK--RSCLAALETRRFDKVKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 244 gsIA~av--ge~f~py~--~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~ 291 (595)
|.|-.-- -..+..|. +.-++.+...--||-|.||--+..-....-.-|
T Consensus 234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 234 GELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 9997522 24556664 444555555556999999866666555555444
No 357
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=20.34 E-value=1.1e+03 Score=25.40 Aligned_cols=73 Identities=22% Similarity=0.269 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHH--HHHhhhhhcCCcchhccHHHHHHHhh
Q 046417 74 RKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAA--TTAMSLNITKPSFSVLSKPLIELILV 147 (595)
Q Consensus 74 RKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~a--Lg~LA~~l~~~~~~~~l~PLi~aLl~ 147 (595)
+...+..|-.+-.+++ .+.+.|..++..=+....|+...+|.-+.++ +..+......+-+...+.|++.-++.
T Consensus 35 ~~~~a~~Lv~if~~~g-~l~~ll~~li~~Ei~~t~~~~tLFRgNSl~TK~~~~y~r~~G~~YL~~~L~pvI~~i~~ 109 (315)
T cd05128 35 RQDVAVPLVKLFLGQG-LIVPFLDALAQLELKRTQDPNTLFRGNSLASKSMEEFMKLAGMHYLHVTLKPIIDKIFE 109 (315)
T ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhCCCHhHHhcCCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 4444444444555554 4556666666666666778777777665544 55555433211122478888887754
No 358
>smart00323 RasGAP GTPase-activator protein for Ras-like GTPases. All alpha-helical domain that accelerates the GTPase activity of Ras, thereby "switching" it into an "off" position. Improved domain limits from structure.
Probab=20.18 E-value=1.1e+03 Score=25.28 Aligned_cols=58 Identities=19% Similarity=0.263 Sum_probs=40.2
Q ss_pred ccchhhHHHHHHHHHhhccCCChhHHHHHHH--HHHHhhhhhcCCcchhccHHHHHHHhh
Q 046417 90 DSLSPHLSKMISTVSCRLRDPDSSVRSACVA--ATTAMSLNITKPSFSVLSKPLIELILV 147 (595)
Q Consensus 90 d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~--aLg~LA~~l~~~~~~~~l~PLi~aLl~ 147 (595)
..+.++|..++..-+....++....|.-++. .+..+..+....-+...+.|++..+..
T Consensus 69 ~~~~~~L~~li~~Ei~~~~~~~~lfR~Nsl~tk~l~~y~k~~g~~yL~~~l~~~i~~i~~ 128 (344)
T smart00323 69 GRGHPFLRALIDPEVERTDDPNTIFRGNSLATKSMEVYMKLVGNQYLHTTLKPVLKKIVE 128 (344)
T ss_pred CcHHHHHHHHHHHHHHcCCcHhhHhhhccHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 4567888888888888888887777765444 477777766533233467787777753
No 359
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=20.02 E-value=4.7e+02 Score=23.11 Aligned_cols=98 Identities=11% Similarity=0.098 Sum_probs=59.6
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHH-HHHH
Q 046417 25 TCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKM-ISTV 103 (595)
Q Consensus 25 ~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkI-L~~I 103 (595)
+.|.+|..-...+...+.|-.+|..-. ..-..++.++.+......|..|-..+-++-.++.-++.....++... .+.+
T Consensus 6 ~~l~~L~~~~~S~~~I~~lt~~a~~~~-~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f 84 (114)
T cd03562 6 ALLEKLTFNKNSQPSIQTLTKLAIENR-KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLF 84 (114)
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 445555544466667777777776543 22445555555555445678888899999999998875543333322 4444
Q ss_pred HhhccCCChhHHHHHHHHHH
Q 046417 104 SCRLRDPDSSVRSACVAATT 123 (595)
Q Consensus 104 vrrLkD~ds~VR~Ac~~aLg 123 (595)
....+..++.+|.....-+.
T Consensus 85 ~~~~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 85 LDAYEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 44555677778766554443
Done!