Query 046417
Match_columns 595
No_of_seqs 172 out of 369
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 20:57:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 99.9 1.9E-20 6.6E-25 214.3 25.2 256 35-291 337-617 (852)
2 2qk2_A LP04448P; mini spindles 99.8 5.7E-20 2E-24 180.5 13.8 199 55-260 13-218 (242)
3 2bpt_A Importin beta-1 subunit 99.8 7.4E-19 2.5E-23 198.2 24.1 255 35-291 347-629 (861)
4 2qk1_A Protein STU2; STU2P, XM 99.8 2E-19 7E-24 180.3 15.6 197 63-260 22-233 (249)
5 1qgr_A Protein (importin beta 99.8 3.3E-18 1.1E-22 193.2 23.5 256 35-291 344-681 (876)
6 1b3u_A Protein (protein phosph 99.8 3.8E-17 1.3E-21 175.8 22.6 266 18-289 238-509 (588)
7 1b3u_A Protein (protein phosph 99.7 4.7E-17 1.6E-21 175.1 18.6 247 37-292 221-473 (588)
8 2bpt_A Importin beta-1 subunit 99.7 8.5E-16 2.9E-20 173.3 25.9 263 28-291 418-713 (861)
9 1u6g_C TIP120 protein, CAND1; 99.7 1.2E-16 4E-21 189.8 17.6 266 21-293 6-288 (1230)
10 1wa5_C Importin alpha RE-expor 99.7 6.7E-16 2.3E-20 180.0 20.3 233 35-271 377-656 (960)
11 1u6g_C TIP120 protein, CAND1; 99.7 9.6E-16 3.3E-20 182.1 20.6 258 30-287 95-401 (1230)
12 4fdd_A Transportin-1; heat rep 99.6 8.9E-15 3E-19 167.5 22.7 254 35-291 190-473 (852)
13 1qgr_A Protein (importin beta 99.6 5.2E-14 1.8E-18 159.0 28.3 266 23-289 409-722 (876)
14 2x1g_F Cadmus; transport prote 99.6 3E-15 1E-19 173.8 18.3 249 36-287 438-720 (971)
15 2x19_B Importin-13; nuclear tr 99.6 9.5E-15 3.3E-19 168.8 19.8 251 36-291 424-716 (963)
16 1ibr_B P95, importin beta-1 su 99.6 3.3E-14 1.1E-18 148.3 20.7 269 16-289 88-395 (462)
17 1ibr_B P95, importin beta-1 su 99.5 1.7E-13 5.7E-18 143.0 19.5 230 36-268 191-459 (462)
18 4hat_C Exportin-1; heat repeat 99.5 3.4E-14 1.2E-18 168.0 14.4 228 35-264 429-692 (1023)
19 2qk2_A LP04448P; mini spindles 99.5 1E-12 3.5E-17 128.8 19.7 190 27-220 21-219 (242)
20 3m1i_C Exportin-1; heat repeat 99.4 4.5E-13 1.5E-17 157.8 14.4 223 36-260 430-688 (1049)
21 3ibv_A Exportin-T; karyopherin 99.4 2.6E-12 8.9E-17 151.4 18.3 248 42-293 420-734 (980)
22 3ltm_A Alpha-REP4; protein eng 99.4 6.9E-12 2.4E-16 119.3 15.7 190 51-292 17-206 (211)
23 2jdq_A Importin alpha-1 subuni 99.4 1.3E-11 4.5E-16 128.6 19.1 249 35-288 166-442 (450)
24 2jdq_A Importin alpha-1 subuni 99.4 1.7E-11 5.7E-16 127.9 19.1 252 35-290 123-391 (450)
25 4b8j_A Importin subunit alpha- 99.4 1.7E-11 6E-16 132.3 19.4 252 35-287 219-494 (528)
26 3ltj_A Alpharep-4; protein eng 99.4 2.6E-11 8.8E-16 114.5 17.9 183 55-289 16-198 (201)
27 1wa5_B Importin alpha subunit; 99.4 1.6E-11 5.5E-16 133.0 18.4 250 34-288 230-509 (530)
28 1wa5_B Importin alpha subunit; 99.3 2.3E-11 7.8E-16 131.8 18.7 253 34-291 188-459 (530)
29 2qk1_A Protein STU2; STU2P, XM 99.3 1.1E-10 3.9E-15 116.7 18.7 199 92-293 13-224 (249)
30 4b8j_A Importin subunit alpha- 99.3 6.4E-11 2.2E-15 127.8 17.6 253 35-291 176-445 (528)
31 4hxt_A De novo protein OR329; 99.2 1.6E-10 5.3E-15 110.8 16.7 235 54-293 3-245 (252)
32 3ltj_A Alpharep-4; protein eng 99.2 4.6E-10 1.6E-14 105.8 19.5 183 17-247 13-197 (201)
33 4hxt_A De novo protein OR329; 99.2 7.1E-11 2.4E-15 113.2 13.9 214 34-252 17-245 (252)
34 1oyz_A Hypothetical protein YI 99.2 2.6E-10 8.9E-15 113.0 18.2 199 52-288 22-220 (280)
35 4db8_A Armadillo-repeat protei 99.2 4E-11 1.4E-15 116.2 11.1 213 31-248 24-251 (252)
36 3ltm_A Alpha-REP4; protein eng 99.2 4.1E-10 1.4E-14 107.0 16.8 176 30-250 28-205 (211)
37 4db6_A Armadillo repeat protei 99.2 1.7E-10 5.7E-15 109.0 13.2 189 55-248 14-209 (210)
38 2vgl_B AP-2 complex subunit be 99.2 7.8E-09 2.7E-13 114.7 28.5 251 28-286 93-416 (591)
39 1oyz_A Hypothetical protein YI 99.2 2.4E-09 8.3E-14 106.0 21.4 214 30-288 32-249 (280)
40 4db8_A Armadillo-repeat protei 99.1 6.3E-10 2.2E-14 107.7 15.2 230 53-287 12-249 (252)
41 3gjx_A Exportin-1; transport, 99.1 1.1E-09 3.7E-14 130.2 17.9 223 36-261 456-715 (1073)
42 3tpo_A Importin subunit alpha- 99.0 9.2E-09 3.1E-13 112.2 19.9 250 37-287 227-495 (529)
43 1w63_A Adapter-related protein 99.0 1.7E-08 5.7E-13 112.9 19.2 243 30-286 116-376 (618)
44 3ul1_B Importin subunit alpha- 98.9 1.3E-08 4.3E-13 110.9 17.0 250 37-287 208-476 (510)
45 1wa5_C Importin alpha RE-expor 98.9 8.5E-09 2.9E-13 120.3 15.2 213 35-250 421-672 (960)
46 3tpo_A Importin subunit alpha- 98.9 2.6E-08 8.9E-13 108.7 17.9 252 32-288 175-448 (529)
47 3ul1_B Importin subunit alpha- 98.9 1.3E-08 4.3E-13 110.9 15.4 251 32-286 70-342 (510)
48 4db6_A Armadillo repeat protei 98.9 1.5E-08 5E-13 95.6 12.9 189 98-287 12-207 (210)
49 2vgl_B AP-2 complex subunit be 98.9 1E-07 3.5E-12 105.7 21.3 207 65-287 57-266 (591)
50 1xqr_A HSPBP1 protein; armadil 98.8 3E-08 1E-12 102.0 14.7 216 72-293 55-288 (296)
51 2x1g_F Cadmus; transport prote 98.8 1E-07 3.5E-12 110.7 20.4 227 35-266 480-740 (971)
52 2x19_B Importin-13; nuclear tr 98.8 2.6E-07 8.8E-12 106.8 23.3 225 35-264 465-730 (963)
53 1xqr_A HSPBP1 protein; armadil 98.8 1.3E-07 4.5E-12 97.2 18.1 184 17-208 27-239 (296)
54 2db0_A 253AA long hypothetical 98.7 1.7E-06 5.9E-11 84.0 21.3 214 57-291 32-248 (253)
55 2z6h_A Catenin beta-1, beta-ca 98.7 1.4E-06 4.8E-11 97.0 22.0 246 32-287 70-334 (644)
56 2z6g_A B-catenin; FULL-length, 98.6 1.5E-06 5.3E-11 99.7 22.3 247 32-287 206-470 (780)
57 4ffb_C Protein STU2; tubulin f 98.6 6.8E-07 2.3E-11 89.6 16.7 188 62-254 14-218 (278)
58 2z6g_A B-catenin; FULL-length, 98.6 2.5E-07 8.6E-12 106.2 15.0 261 24-289 362-663 (780)
59 1jdh_A Beta-catenin; beta-cate 98.6 3.3E-06 1.1E-10 89.9 22.6 246 32-287 73-337 (529)
60 3nmw_A APC variant protein; AR 98.6 6.5E-07 2.2E-11 94.2 16.8 266 13-289 42-334 (354)
61 3now_A UNC-45 protein, SD10334 98.6 1.7E-06 5.9E-11 100.2 21.2 220 55-285 497-733 (810)
62 2iw3_A Elongation factor 3A; a 98.6 1.1E-06 3.9E-11 103.4 18.9 218 23-247 97-323 (986)
63 1jdh_A Beta-catenin; beta-cate 98.6 3.6E-07 1.2E-11 97.3 13.1 248 35-287 243-528 (529)
64 2z6h_A Catenin beta-1, beta-ca 98.6 6.4E-07 2.2E-11 99.8 15.4 248 35-287 240-525 (644)
65 3nmz_A APC variant protein; pr 98.6 1.5E-06 5.2E-11 94.6 17.9 259 18-288 163-449 (458)
66 3now_A UNC-45 protein, SD10334 98.5 2.3E-06 7.7E-11 99.2 19.0 263 24-293 497-786 (810)
67 2vgl_A Adaptor protein complex 98.5 4.6E-06 1.6E-10 93.6 20.5 231 41-279 130-388 (621)
68 3a6p_A Exportin-5; exportin-5, 98.5 5.7E-07 1.9E-11 108.1 13.2 198 36-235 440-687 (1204)
69 2iw3_A Elongation factor 3A; a 98.5 9.4E-06 3.2E-10 95.7 22.2 259 30-293 25-328 (986)
70 1w63_A Adapter-related protein 98.4 1.3E-05 4.3E-10 89.7 21.0 240 32-290 153-415 (618)
71 2vgl_A Adaptor protein complex 98.4 5.8E-06 2E-10 92.8 16.6 178 55-247 76-269 (621)
72 2of3_A ZYG-9; multifunctional 98.3 3.1E-05 1E-09 78.9 19.9 178 70-258 59-246 (266)
73 1te4_A Conserved protein MTH18 98.3 1.2E-07 4.2E-12 84.4 1.0 123 95-246 9-131 (131)
74 3m1i_C Exportin-1; heat repeat 98.2 1.1E-05 3.9E-10 94.9 14.5 187 72-262 428-634 (1049)
75 1te4_A Conserved protein MTH18 98.2 3.3E-07 1.1E-11 81.6 1.1 119 57-204 12-130 (131)
76 4ffb_C Protein STU2; tubulin f 98.1 4E-05 1.4E-09 76.7 15.1 180 28-210 16-215 (278)
77 3nmw_A APC variant protein; AR 98.1 3.2E-05 1.1E-09 81.2 13.9 211 35-250 100-336 (354)
78 3nmz_A APC variant protein; pr 98.0 8.6E-05 2.9E-09 80.8 15.1 209 35-248 216-450 (458)
79 1xm9_A Plakophilin 1; armadill 98.0 0.00015 5.2E-09 77.8 16.8 221 24-248 92-406 (457)
80 3l6x_A Catenin delta-1; cateni 97.9 0.00062 2.1E-08 76.3 20.7 250 35-287 150-475 (584)
81 2db0_A 253AA long hypothetical 97.9 0.0022 7.7E-08 62.4 21.0 214 21-251 31-249 (253)
82 3ibv_A Exportin-T; karyopherin 97.8 0.00031 1E-08 83.0 18.1 230 35-266 459-748 (980)
83 4ady_A RPN2, 26S proteasome re 97.8 0.0011 3.9E-08 77.8 21.1 203 53-288 472-675 (963)
84 3l6x_A Catenin delta-1; cateni 97.7 0.0016 5.3E-08 73.1 20.8 209 35-248 24-270 (584)
85 4hat_C Exportin-1; heat repeat 97.7 0.00011 3.9E-09 87.1 12.0 169 79-251 435-621 (1023)
86 3tjz_B Coatomer subunit gamma; 97.7 6.1E-05 2.1E-09 79.6 8.6 226 35-280 84-344 (355)
87 4ady_A RPN2, 26S proteasome re 97.6 0.0015 5.3E-08 76.6 19.6 218 18-256 507-728 (963)
88 1xm9_A Plakophilin 1; armadill 97.6 0.00021 7.3E-09 76.7 10.6 129 54-187 3-136 (457)
89 3tjz_B Coatomer subunit gamma; 97.4 0.0095 3.3E-07 62.8 19.6 228 20-269 24-259 (355)
90 2of3_A ZYG-9; multifunctional 97.4 0.0016 5.4E-08 66.3 13.0 190 14-212 34-241 (266)
91 3opb_A SWI5-dependent HO expre 97.3 0.026 8.8E-07 65.1 23.7 232 50-288 454-728 (778)
92 3oc3_A Helicase MOT1, MOT1; re 97.3 0.0017 5.9E-08 72.1 12.8 203 18-244 218-432 (800)
93 3tt9_A Plakophilin-2; cell adh 97.2 0.0033 1.1E-07 62.6 13.6 167 100-268 10-206 (233)
94 1lrv_A LRV, leucine-rich repea 97.2 0.00015 5E-09 72.8 3.1 157 62-286 79-243 (244)
95 3opb_A SWI5-dependent HO expre 97.2 0.0091 3.1E-07 68.8 17.8 173 35-208 517-729 (778)
96 3tt9_A Plakophilin-2; cell adh 97.1 0.011 3.8E-07 58.7 15.9 171 55-229 10-208 (233)
97 3b2a_A TON_1937, putative unch 97.1 0.013 4.5E-07 58.8 16.0 182 52-248 32-218 (265)
98 4gmo_A Putative uncharacterize 97.0 0.00087 3E-08 75.9 7.6 151 98-249 35-215 (684)
99 3oc3_A Helicase MOT1, MOT1; re 96.9 0.0057 2E-07 68.1 12.4 231 28-288 181-432 (800)
100 3gjx_A Exportin-1; transport, 96.6 0.011 3.9E-07 70.5 12.8 154 98-252 477-648 (1073)
101 1lrv_A LRV, leucine-rich repea 96.6 0.00092 3.1E-08 67.0 3.0 129 62-245 103-243 (244)
102 3l9t_A Putative uncharacterize 96.4 0.031 1.1E-06 56.0 12.6 131 23-165 72-206 (240)
103 1vsy_5 Proteasome activator BL 96.1 0.017 5.8E-07 68.5 10.6 154 39-197 782-956 (997)
104 3l9t_A Putative uncharacterize 96.1 0.13 4.4E-06 51.5 15.4 147 96-258 69-217 (240)
105 3gs3_A Symplekin, LD45768P; he 96.1 1.4 4.9E-05 44.2 25.9 162 16-207 10-173 (257)
106 3o2t_A Symplekin; heat repeat, 96.0 0.71 2.4E-05 49.2 21.4 205 17-228 21-273 (386)
107 3a6p_A Exportin-5; exportin-5, 95.9 0.42 1.4E-05 57.6 21.5 179 71-250 437-659 (1204)
108 3grl_A General vesicular trans 95.7 0.34 1.2E-05 54.8 18.3 229 55-288 124-393 (651)
109 3b2a_A TON_1937, putative unch 95.7 0.27 9.2E-06 49.4 15.5 178 98-287 33-216 (265)
110 1vsy_4 Proteasome activator BL 94.9 0.6 2E-05 54.2 17.4 269 16-293 329-695 (799)
111 4gmo_A Putative uncharacterize 93.7 0.2 6.8E-06 56.6 10.0 146 137-287 35-212 (684)
112 4atg_A TAF6; transcription, TF 91.7 2.5 8.6E-05 40.9 13.4 128 40-167 26-163 (196)
113 1lsh_A Lipovitellin (LV-1N, LV 91.1 4 0.00014 48.5 17.1 187 39-248 375-576 (1056)
114 4atg_A TAF6; transcription, TF 89.6 3.2 0.00011 40.2 11.9 128 136-273 11-144 (196)
115 1lsh_A Lipovitellin (LV-1N, LV 88.9 19 0.00066 42.7 20.4 182 39-248 312-507 (1056)
116 1vsy_4 Proteasome activator BL 86.8 9 0.00031 44.4 15.4 168 57-230 339-569 (799)
117 1upk_A MO25 protein; transfera 86.7 33 0.0011 35.8 21.6 247 14-272 10-313 (341)
118 3grl_A General vesicular trans 86.2 10 0.00035 42.9 15.0 152 97-250 20-197 (651)
119 3u0r_A Apoptosis inhibitor 5; 86.0 16 0.00056 40.0 15.9 89 32-127 41-129 (507)
120 1vsy_5 Proteasome activator BL 80.6 6.5 0.00022 46.7 11.0 109 18-127 839-966 (997)
121 3gs3_A Symplekin, LD45768P; he 69.8 92 0.0032 31.0 15.0 127 158-292 33-176 (257)
122 3vh7_A Envelope glycoprotein G 69.2 6.9 0.00024 30.8 4.8 49 480-528 4-55 (58)
123 1w9c_A CRM1 protein, exportin 68.8 88 0.003 32.3 14.6 156 55-211 71-252 (321)
124 2npp_B PP2A, B subunit, serine 67.2 1.4E+02 0.0049 32.2 16.8 142 137-293 281-436 (449)
125 3o2t_A Symplekin; heat repeat, 56.0 2E+02 0.007 30.3 24.5 191 95-291 60-303 (386)
126 3fga_B Serine/threonine-protei 55.2 2.2E+02 0.0074 30.3 18.9 113 136-255 247-373 (403)
127 3jxy_A Alkylpurine DNA glycosy 55.1 1.5E+02 0.0051 28.5 14.6 189 19-238 5-218 (232)
128 3s4w_B Protein FACD2, fanconi 54.2 2.8E+02 0.0096 34.0 17.2 87 18-111 172-259 (1323)
129 3ldz_A STAM-1, signal transduc 53.1 50 0.0017 29.7 8.4 95 37-133 24-120 (140)
130 3ldz_A STAM-1, signal transduc 48.4 1.5E+02 0.0051 26.5 11.4 70 139-209 45-116 (140)
131 3dad_A FH1/FH2 domain-containi 47.3 2.7E+02 0.0091 29.0 16.5 147 20-171 117-291 (339)
132 1x5b_A Signal transducing adap 46.9 1.7E+02 0.006 26.8 12.3 108 36-145 33-143 (163)
133 3s4w_B Protein FACD2, fanconi 42.3 5.6E+02 0.019 31.4 21.6 250 19-281 361-623 (1323)
134 3jxy_A Alkylpurine DNA glycosy 39.8 1.7E+02 0.0057 28.2 10.4 130 34-177 76-206 (232)
135 1t06_A Hypothetical protein; s 37.1 46 0.0016 32.4 5.9 67 63-129 114-182 (235)
136 2rg8_A Programmed cell death p 36.4 59 0.002 30.1 6.2 69 12-84 2-71 (165)
137 2b6c_A Hypothetical protein EF 35.4 1E+02 0.0035 29.4 8.0 97 69-176 102-198 (220)
138 3g2s_A C-terminal fragment of 34.4 1.6E+02 0.0054 26.8 8.7 70 138-208 50-127 (149)
139 3tj1_A RNA polymerase I-specif 34.1 4.1E+02 0.014 30.0 13.6 108 71-186 152-262 (649)
140 1x5b_A Signal transducing adap 33.6 2.1E+02 0.0071 26.3 9.5 72 218-292 51-128 (163)
141 1qbz_A Protein (SIV GP41 ectod 32.8 56 0.0019 29.3 5.1 41 488-528 8-51 (123)
142 1vdy_A Hypothetical protein (R 30.6 1.6E+02 0.0055 26.7 7.9 75 217-291 47-132 (140)
143 2b6c_A Hypothetical protein EF 30.2 83 0.0028 30.1 6.3 63 60-128 127-189 (220)
144 3zyq_A Hepatocyte growth facto 28.2 2E+02 0.0067 27.8 8.7 88 138-226 47-138 (226)
145 1ho8_A Vacuolar ATP synthase s 28.2 53 0.0018 35.9 4.9 56 110-165 417-475 (480)
146 1juq_A ADP-ribosylation factor 28.0 3E+02 0.01 25.4 9.6 74 218-292 49-131 (171)
147 2zfc_A HIV-1 GP41; peptide, vi 27.1 61 0.0021 24.3 3.7 16 511-526 33-48 (49)
148 1pyi_A Protein (pyrimidine pat 25.8 21 0.00072 29.5 1.1 31 512-542 50-80 (96)
149 3p8c_E Probable protein brick1 24.0 1.1E+02 0.0038 25.2 4.9 41 490-530 25-65 (75)
150 1vdy_A Hypothetical protein (R 23.5 2.4E+02 0.0081 25.6 7.7 109 18-127 10-130 (140)
151 1elk_A Target of MYB1; superhe 23.1 3.5E+02 0.012 24.5 8.9 72 218-289 52-130 (157)
152 1dvp_A HRS, hepatocyte growth 22.6 4.9E+02 0.017 24.6 11.9 72 218-292 41-118 (220)
153 1mhq_A ADP-ribosylation factor 21.6 4.4E+02 0.015 23.7 9.6 74 218-291 37-118 (148)
154 1zme_C Proline utilization tra 21.5 54 0.0019 25.2 2.6 22 512-533 46-67 (70)
155 3jui_A Translation initiation 20.5 2.8E+02 0.0097 25.8 7.9 72 110-184 49-132 (182)
156 3d9j_A RNA-binding protein 16; 20.2 4.7E+02 0.016 23.3 9.1 88 197-289 24-119 (145)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.86 E-value=1.9e-20 Score=214.34 Aligned_cols=256 Identities=17% Similarity=0.140 Sum_probs=208.4
Q ss_pred hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhH
Q 046417 35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSV 114 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~V 114 (595)
.++.|+..|+.++..++.+.++.+++.|.+...+++|.+|++++.+||.+++++++.+.||++.+++.+++.|+|+++.|
T Consensus 337 vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~V 416 (852)
T 4fdd_A 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV 416 (852)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 37899999999999998777999999999888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc
Q 046417 115 RSACVAATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG 191 (595)
Q Consensus 115 R~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~ 191 (595)
|.+|+|++|+|+.++.......++.+++..|+ .+.++.|+..|+.||..+++..+..+.+|++.|++.|..+++...
T Consensus 417 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~ 496 (852)
T 4fdd_A 417 RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQ 496 (852)
T ss_dssp HHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhC
Confidence 99999999999998753222224444444433 578899999999999999999777778999999999999998776
Q ss_pred hhHHHHHHHHHHHHHHhhcccC--cCcHHhHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHH----HH
Q 046417 192 FKAKAAVLGVIGSVVRVGGARS--KGVLDWLVPCLVEFL---CCDDWATRKAAAEVLGKVAVFDKDLATEYKRS----CL 262 (595)
Q Consensus 192 ~kaK~alLsAIgSlA~a~g~~~--~~yl~~lmp~L~e~L---~~dDW~~RkaAaEaLgsIA~avge~f~py~~~----~I 262 (595)
.+....++++|++++.+.|..+ .+|++.+||.|.+.| .+++...| .+++||+.|+.++|..|.||.+. |+
T Consensus 497 ~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~ 575 (852)
T 4fdd_A 497 HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCV 575 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 6666778899999998776543 469999999999665 45665665 89999999999999988888765 45
Q ss_pred HHHHhc------------cCCc-hHHHHHHHHHHHHHhHhcC
Q 046417 263 AALETR------------RFDK-VKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 263 ~~Le~c------------rfDK-VK~VRda~~~aL~~~K~i~ 291 (595)
..|+.+ .++. -+.+|..+..+|..+-+.-
T Consensus 576 ~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l 617 (852)
T 4fdd_A 576 NLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGL 617 (852)
T ss_dssp HHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHH
Confidence 566654 2221 1346666666666555433
No 2
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.82 E-value=5.7e-20 Score=180.50 Aligned_cols=199 Identities=17% Similarity=0.164 Sum_probs=167.8
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc-cCCChhHHHHHHHHHHHhhhhhcCC-
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL-RDPDSSVRSACVAATTAMSLNITKP- 132 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL-kD~ds~VR~Ac~~aLg~LA~~l~~~- 132 (595)
+..+-+.|.+...+.+|..|++++..|+.++++|++.+.+++.++++.+.++| +|+++.||.+++.+++.|+..+...
T Consensus 13 ~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp GGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred cccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 44444455555667889999999999999999998777777899999999999 5999999999999999999877431
Q ss_pred -cch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc
Q 046417 133 -SFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG 210 (595)
Q Consensus 133 -~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g 210 (595)
+.. .++++|++.| +|+++.|+.+|+.||.++++..+ +..+++.|...|++.+.++|..++..|+.++...+
T Consensus 93 ~~~~~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 93 SNYASACVPSLLEKF-KEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HHHHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 111 2666677766 78899999999999999998652 57899999999999999999999999999776543
Q ss_pred --ccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH-hHHHHHHH
Q 046417 211 --ARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD-LATEYKRS 260 (595)
Q Consensus 211 --~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge-~f~py~~~ 260 (595)
..+.+|++.+||.|.++|.|.+|.+|.+|++||+.|+.++|+ .|.+|.+.
T Consensus 166 ~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~ 218 (242)
T 2qk2_A 166 PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLAD 218 (242)
T ss_dssp GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT
T ss_pred CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 346789999999999999999999999999999999999985 57777654
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.82 E-value=7.4e-19 Score=198.19 Aligned_cols=255 Identities=9% Similarity=0.034 Sum_probs=207.7
Q ss_pred hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccchhhHHHHHHHHHhhccCCChh
Q 046417 35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSLSPHLSKMISTVSCRLRDPDSS 113 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I~PhLpkIL~~IvrrLkD~ds~ 113 (595)
.++.|...|+.++..++...++.+++.|.+...+.+|.+|++++.+||.++++++ +.+.+|++.|++.+++.++|+++.
T Consensus 347 ~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~ 426 (861)
T 2bpt_A 347 VSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ 426 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 5678999999999999877799999999988888899999999999999999997 888999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCC----cch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC----CchHHHHHHHHHHHH
Q 046417 114 VRSACVAATTAMSLNITKP----SFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP----NPEVEQLRKLLPRLG 184 (595)
Q Consensus 114 VR~Ac~~aLg~LA~~l~~~----~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~----d~~~~~L~~Ll~rL~ 184 (595)
||.+++|++|+++.++... ... .++++|+..| .+. +.|+..||.+|..+++... ..+.+|++.|++.|.
T Consensus 427 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l-~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~ 504 (861)
T 2bpt_A 427 VKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL-QDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLI 504 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH-TSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 9999999999999987421 111 2555566665 454 8899999999999999854 445689999999999
Q ss_pred HhhccC--chhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccC---------------CCHHHHHHHHHHHHHHH
Q 046417 185 KAVRIE--GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCC---------------DDWATRKAAAEVLGKVA 247 (595)
Q Consensus 185 klL~~~--~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~---------------dDW~~RkaAaEaLgsIA 247 (595)
+++++. ...+|.+++.+++.++...+..+.+|+..++|.+.+.|.+ ....+|..++++|+.|+
T Consensus 505 ~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~ 584 (861)
T 2bpt_A 505 GAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVI 584 (861)
T ss_dssp HHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHH
Confidence 999853 3678999999999999987776788999999999888752 24568899999999999
Q ss_pred HHhHHhHHHHHHHHHHHHHhccCCchH-HHHHHHHHHHHHhHhcC
Q 046417 248 VFDKDLATEYKRSCLAALETRRFDKVK-IVRETMNRSLEMWKEVP 291 (595)
Q Consensus 248 ~avge~f~py~~~~I~~Le~crfDKVK-~VRda~~~aL~~~K~i~ 291 (595)
..+|+.+.||.+.+++.+...--+.-. .||+.+..++..+-...
T Consensus 585 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~ 629 (861)
T 2bpt_A 585 RKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASL 629 (861)
T ss_dssp HHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHH
Confidence 999987777776655543322112223 68888888877665543
No 4
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2e-19 Score=180.27 Aligned_cols=197 Identities=12% Similarity=0.068 Sum_probs=168.8
Q ss_pred hhcCCCCChHHHHHHHHHHHH-HHHHccccc--hhhHHHHHHHHHhhc-cCCChhHHHHHHHHHHHhhhhhcCCcch-h-
Q 046417 63 QTTDSSSKSPVRKQCVNLLTL-LSRSHGDSL--SPHLSKMISTVSCRL-RDPDSSVRSACVAATTAMSLNITKPSFS-V- 136 (595)
Q Consensus 63 ~d~~ss~kp~vRKaaI~lLG~-lAEg~gd~I--~PhLpkIL~~IvrrL-kD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~- 136 (595)
.+..++.+|..|++++..|+. ++++|++.+ ..++.+++..+.+.| +|++..||.+++.+||+|+..+..+.+. .
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 334456799999999999999 999999887 566678999999999 8999999999999999999988511222 2
Q ss_pred ---ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcc-
Q 046417 137 ---LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGA- 211 (595)
Q Consensus 137 ---~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~- 211 (595)
++++|++.+ ++..+.|+.++..||.++++..+... .+|++.++++|+..|++++.++|.+++.+|+.++...+.
T Consensus 102 ~~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 102 VSLVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 566677666 78889999999999999999864422 235999999999999999999999999999999987763
Q ss_pred --cCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH-hHHHHHHH
Q 046417 212 --RSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD-LATEYKRS 260 (595)
Q Consensus 212 --~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge-~f~py~~~ 260 (595)
.+.+|+ +.+||.|.+++.+.+-.+|.+|++||+.|+.++|+ .|.||.+.
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 366899 99999999999999999999999999999999995 68888766
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.79 E-value=3.3e-18 Score=193.25 Aligned_cols=256 Identities=11% Similarity=0.060 Sum_probs=197.9
Q ss_pred hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccchhhHHHHHHHHHhhccCCChh
Q 046417 35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSLSPHLSKMISTVSCRLRDPDSS 113 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I~PhLpkIL~~IvrrLkD~ds~ 113 (595)
.++.|+..|..++..++...++.+++.|.+...+.+|.+|++++.+||.++++++ +.+.+|++.+++.+++.|+|+++.
T Consensus 344 ~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~ 423 (876)
T 1qgr_A 344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423 (876)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 6778999999999999866799999999888888899999999999999999998 778899999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCCc-chhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcCC--------------CchHHH
Q 046417 114 VRSACVAATTAMSLNITKPS-FSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAAP--------------NPEVEQ 175 (595)
Q Consensus 114 VR~Ac~~aLg~LA~~l~~~~-~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a~--------------d~~~~~ 175 (595)
||.+|++++|+|+.++.... ...++.+++..|+ .+ ++.|+..|+.||..+++... ..+.+|
T Consensus 424 vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 502 (876)
T 1qgr_A 424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSS 502 (876)
T ss_dssp HHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTT
T ss_pred HHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHh
Confidence 99999999999999874311 1124444444443 34 48899999999999998743 335689
Q ss_pred HHHHHHHHHHhhccC---chhHHHHHHHHHHHHH----------------------------------------------
Q 046417 176 LRKLLPRLGKAVRIE---GFKAKAAVLGVIGSVV---------------------------------------------- 206 (595)
Q Consensus 176 L~~Ll~rL~klL~~~---~~kaK~alLsAIgSlA---------------------------------------------- 206 (595)
++.|++.|..++... ...+|..++++++.++
T Consensus 503 ~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~ 582 (876)
T 1qgr_A 503 FELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQS 582 (876)
T ss_dssp HHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHH
Confidence 999999999998754 2334444444444443
Q ss_pred ----------Hhhc-ccCcCcHHhHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCc-
Q 046417 207 ----------RVGG-ARSKGVLDWLVPCLVEFLCCDD--WATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDK- 272 (595)
Q Consensus 207 ----------~a~g-~~~~~yl~~lmp~L~e~L~~dD--W~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDK- 272 (595)
...+ ..+.+|++.+||.|...+.+.. |.+|..++.+|+.|+...|..|.+|.+.+++.|..+--|.
T Consensus 583 ~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 662 (876)
T 1qgr_A 583 LLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYA 662 (876)
T ss_dssp HHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcc
Confidence 3333 4456888889999999887654 6899999999999999999888888877777655543344
Q ss_pred hHHHHHHHHHHHHHhHhcC
Q 046417 273 VKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 273 VK~VRda~~~aL~~~K~i~ 291 (595)
...||.++..+|..+-...
T Consensus 663 ~~~vr~~a~~~l~~l~~~~ 681 (876)
T 1qgr_A 663 EYQVCLAAVGLVGDLCRAL 681 (876)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5679998888877665433
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.76 E-value=3.8e-17 Score=175.81 Aligned_cols=266 Identities=14% Similarity=0.111 Sum_probs=203.1
Q ss_pred HHHHHHHHHhhhc-CCCC--hHHHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccch
Q 046417 18 DLKQRVITCLNKL-ADRD--TLPVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLS 93 (595)
Q Consensus 18 ~lk~rvl~~L~KL-~DrD--T~r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~ 93 (595)
.....++..|.++ .|.+ .++.|+..|..++..++++. .+.+++.+.....++++.+|++++.+||.+++.++....
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 317 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR 317 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence 3445566666655 4555 57889999999998876543 344455555544556799999999999999999986554
Q ss_pred --hhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc
Q 046417 94 --PHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP 171 (595)
Q Consensus 94 --PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~ 171 (595)
++++.++|++.+.++|+++.||.+++++|+.++..+.+......+.|++..++.+.++.|+.+++.+|..+++..+.
T Consensus 318 ~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~- 396 (588)
T 1b3u_A 318 ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI- 396 (588)
T ss_dssp HHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-
T ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH-
Confidence 78999999999999999999999999999999988753222235667666666888899999999999999887543
Q ss_pred hHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417 172 EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK 251 (595)
Q Consensus 172 ~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg 251 (595)
..+.+.++|.|.+++++++..+|.+++.+++.++...+.. .+.+.++|.+...+.+++|.+|.+|+.+|+.++...|
T Consensus 397 -~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 473 (588)
T 1b3u_A 397 -RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 473 (588)
T ss_dssp -HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Confidence 2356778888889998888899999999999988765543 2336788999999999999999999999999988887
Q ss_pred HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417 252 DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKE 289 (595)
Q Consensus 252 e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~ 289 (595)
..+ +...+++.|..+..|.-..||.++..++..+-.
T Consensus 474 ~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~ 509 (588)
T 1b3u_A 474 KEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE 509 (588)
T ss_dssp HHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred chh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 532 244555566566667777888888877776644
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.73 E-value=4.7e-17 Score=175.11 Aligned_cols=247 Identities=18% Similarity=0.186 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHhCCcCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHH
Q 046417 37 PVATAELESIARTLTQDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVR 115 (595)
Q Consensus 37 r~A~~~LD~lA~~L~~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR 115 (595)
..|+..|..++..++++. .+.+++.|.....+++|.+|++++.+||.+++.++.. .+.+.+++.+++.++|+++.||
T Consensus 221 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr 298 (588)
T 1b3u_A 221 LLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVR 298 (588)
T ss_dssp TTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHH
Confidence 345556666666555432 3334444444444455666666666666666665432 2345566666667777777777
Q ss_pred HHHHHHHHHhhhhhcCC----cchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc
Q 046417 116 SACVAATTAMSLNITKP----SFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG 191 (595)
Q Consensus 116 ~Ac~~aLg~LA~~l~~~----~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~ 191 (595)
.+|+++++.++..+... .....+.|.+..++.+.+..|..+++.+|..+.+..+.. ..++.++|-|..+|+++.
T Consensus 299 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~ 376 (588)
T 1b3u_A 299 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD--NTIEHLLPLFLAQLKDEC 376 (588)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--HHHHHTHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHhCCCc
Confidence 77777777776655322 111233344444445666666666666666665543321 234567788888888877
Q ss_pred hhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH-hHHHHHHHHHHHHHhccC
Q 046417 192 FKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD-LATEYKRSCLAALETRRF 270 (595)
Q Consensus 192 ~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge-~f~py~~~~I~~Le~crf 270 (595)
..+|.+++.+++.+....+.. .+.+.++|.|.+++.+.+|.+|.+++++|+.++..+|. .+.+ .+++.|..+--
T Consensus 377 ~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~ 451 (588)
T 1b3u_A 377 PEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDE---KLNSLCMAWLV 451 (588)
T ss_dssp HHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCH---HHHHHHHHGGG
T ss_pred hHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHH---HHHHHHHHHhc
Confidence 788888888888777644322 24577899999999999999999999999999999874 4433 34445555555
Q ss_pred CchHHHHHHHHHHHHHhHhcCC
Q 046417 271 DKVKIVRETMNRSLEMWKEVPG 292 (595)
Q Consensus 271 DKVK~VRda~~~aL~~~K~i~~ 292 (595)
|+...||+++..+|..+-...+
T Consensus 452 d~~~~Vr~~a~~~l~~l~~~~~ 473 (588)
T 1b3u_A 452 DHVYAIREAATSNLKKLVEKFG 473 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999988766543
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.71 E-value=8.5e-16 Score=173.26 Aligned_cols=263 Identities=13% Similarity=0.081 Sum_probs=209.5
Q ss_pred hhcCCCC--hHHHHHHHHHHHHHhCC-----cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc----ccchhhH
Q 046417 28 NKLADRD--TLPVATAELESIARTLT-----QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG----DSLSPHL 96 (595)
Q Consensus 28 ~KL~DrD--T~r~A~~~LD~lA~~L~-----~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g----d~I~PhL 96 (595)
..|.|.+ -+..|+..|-.++..++ ...++.+++.|.....+. +.+|.+++.+|+.++++++ +.+.||+
T Consensus 418 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~ 496 (861)
T 2bpt_A 418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY 496 (861)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 3445655 35567778888887764 234777777777666544 8999999999999999986 6788999
Q ss_pred HHHHHHHHhhccCC--ChhHHHHHHHHHHHhhhhhcCC--cch-hccHHHHHHHhh--------------cCChhHHHHH
Q 046417 97 SKMISTVSCRLRDP--DSSVRSACVAATTAMSLNITKP--SFS-VLSKPLIELILV--------------EQDVNSQVGG 157 (595)
Q Consensus 97 pkIL~~IvrrLkD~--ds~VR~Ac~~aLg~LA~~l~~~--~~~-~~l~PLi~aLl~--------------d~nk~VQ~~A 157 (595)
+.|++.+++.++++ ++.||.+++++++.++...... +.. .++++++..|.. +....++..+
T Consensus 497 ~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 576 (861)
T 2bpt_A 497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI 576 (861)
T ss_dssp HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHH
Confidence 99999999999854 4789999999999999877432 111 255666666632 1134577889
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCch-hHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHH
Q 046417 158 AMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGF-KAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATR 236 (595)
Q Consensus 158 A~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~-kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~R 236 (595)
+.||..+++..+....+|++.+++.+..+++.... .++..++.+++.++.+.+..+.+|++.++|.|.+.|.++++.+|
T Consensus 577 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr 656 (861)
T 2bpt_A 577 LTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS 656 (861)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHH
Confidence 99999999998777779999999999999988766 78889999999999988888899999999999999998999999
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCc-h-HHHHHHHHHHHHHhHhcC
Q 046417 237 KAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDK-V-KIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 237 kaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDK-V-K~VRda~~~aL~~~K~i~ 291 (595)
..|+.+|+.|+..+|+.|.+|...++..+-.+--|. . ..||..+..+|..+-...
T Consensus 657 ~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~ 713 (861)
T 2bpt_A 657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI 713 (861)
T ss_dssp HHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHh
Confidence 999999999999999989999888877755443232 1 578988888886665443
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.70 E-value=1.2e-16 Score=189.85 Aligned_cols=266 Identities=14% Similarity=0.127 Sum_probs=211.6
Q ss_pred HHHHHHhhhcC--CCChHHHHHHHHHHHHHh----CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh
Q 046417 21 QRVITCLNKLA--DRDTLPVATAELESIART----LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP 94 (595)
Q Consensus 21 ~rvl~~L~KL~--DrDT~r~A~~~LD~lA~~----L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P 94 (595)
+.+.+.|.++. |.|.++.|...|....+. +++.....+++.|.+...+.+|.+|++++.+|+.+++++++ +
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~ 82 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---Y 82 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---H
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---H
Confidence 45678888885 555888898888775432 22333556666666666667899999999999999999887 7
Q ss_pred hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc--------ch-hccHHHHHHHhh-cCChhHHHHHHHHHHHH
Q 046417 95 HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS--------FS-VLSKPLIELILV-EQDVNSQVGGAMCLAAA 164 (595)
Q Consensus 95 hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~--------~~-~~l~PLi~aLl~-d~nk~VQ~~AA~cLaav 164 (595)
+++.|++.++..|.|+++.||.+++.+|+.++..+.... .. .+++.|+..| . ..+..++.+|..+|..+
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l-~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAI-AKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHH-SCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHH
Confidence 899999999999999999999999999999998875320 11 2666677777 4 36788999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCC-CHHHHHHHHHHH
Q 046417 165 IDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCD-DWATRKAAAEVL 243 (595)
Q Consensus 165 iE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~d-DW~~RkaAaEaL 243 (595)
++..+..+.+|++.+++.|...|.++...+|..++.+|+.++...+..+ ++.+||.|.+.|.++ +|.+|..++++|
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l 238 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCI 238 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 9887766778999999999999999988999999999999987655432 566778888777644 468899999999
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417 244 GKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 244 gsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~ 293 (595)
+.|+..+|+.|.+|...+++.+-..--|.-..||+++.+++..|-...+.
T Consensus 239 ~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 239 AAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp HHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence 99999999888888877777765555577888999999999998876543
No 10
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.68 E-value=6.7e-16 Score=179.99 Aligned_cols=233 Identities=10% Similarity=0.080 Sum_probs=176.4
Q ss_pred hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCC------CCChHHHHHHHHHHHHHHHH---ccccchh-----hHHHH-
Q 046417 35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDS------SSKSPVRKQCVNLLTLLSRS---HGDSLSP-----HLSKM- 99 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~s------s~kp~vRKaaI~lLG~lAEg---~gd~I~P-----hLpkI- 99 (595)
.+++|...|+.++..++...++++++.+.+... +.+|..|++++.+||.++++ +.+.+.. .+..+
T Consensus 377 ~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l 456 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF 456 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH
Confidence 677889999999999986568888888766554 67899999999999999986 3223332 44444
Q ss_pred HHHHHhhccCC---ChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcC-----
Q 046417 100 ISTVSCRLRDP---DSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAA----- 168 (595)
Q Consensus 100 L~~IvrrLkD~---ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a----- 168 (595)
+.+++..|+|+ .+.||.+|||++|++++|+. + .++.+++.+|+ .+.++.|+..||.||..+++..
T Consensus 457 ~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~--~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~ 532 (960)
T 1wa5_C 457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--K--AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTS 532 (960)
T ss_dssp HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--H--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSS
T ss_pred HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--H--HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccc
Confidence 44677788898 89999999999999999973 2 24444444443 4678999999999999999852
Q ss_pred ------CCchHHHHHHHHHHHHHhhccC-----chhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc-----CCC
Q 046417 169 ------PNPEVEQLRKLLPRLGKAVRIE-----GFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC-----CDD 232 (595)
Q Consensus 169 ------~d~~~~~L~~Ll~rL~klL~~~-----~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~-----~dD 232 (595)
.+.+.||++.|+++|+++++.. .......++.+|++++.+.+..+.||++.+|+.|...|. .++
T Consensus 533 ~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~ 612 (960)
T 1wa5_C 533 PAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSN 612 (960)
T ss_dssp CCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCC
T ss_pred ccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCC
Confidence 2335689999999999999774 122346889999999998888889999999999998874 356
Q ss_pred HHHHHHHHHHHHHHHHHhH-HhHHHHHHHHH----HHHHhccCC
Q 046417 233 WATRKAAAEVLGKVAVFDK-DLATEYKRSCL----AALETRRFD 271 (595)
Q Consensus 233 W~~RkaAaEaLgsIA~avg-e~f~py~~~~I----~~Le~crfD 271 (595)
-..+..++|||+.|+.+.+ +.+.+|.+.++ .+|+++-.|
T Consensus 613 ~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~ 656 (960)
T 1wa5_C 613 PRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQE 656 (960)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHh
Confidence 7788889999999999854 45555554444 456655433
No 11
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.67 E-value=9.6e-16 Score=182.05 Aligned_cols=258 Identities=15% Similarity=0.207 Sum_probs=212.6
Q ss_pred cCCCC--hHHHHHHHHHHHHHhCCcC---------cHHHHHHhhhhcCC-CCChHHHHHHHHHHHHHHHHccccchhhHH
Q 046417 30 LADRD--TLPVATAELESIARTLTQD---------SFSSFLNCLQTTDS-SSKSPVRKQCVNLLTLLSRSHGDSLSPHLS 97 (595)
Q Consensus 30 L~DrD--T~r~A~~~LD~lA~~L~~~---------~lp~fL~~L~d~~s-s~kp~vRKaaI~lLG~lAEg~gd~I~PhLp 97 (595)
|.|.+ .+..|+..|..++..++++ ..+.+++.|.+... ++++.+|.+++.+|+.+++.+++.+.||++
T Consensus 95 l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~ 174 (1230)
T 1u6g_C 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHP 174 (1230)
T ss_dssp TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 44544 4677899999999999865 36666776666655 467999999999999999999999999999
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH
Q 046417 98 KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR 177 (595)
Q Consensus 98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~ 177 (595)
.+++.++..|.|+++.||.+++.+++.++..+.+.-+..++..|+..|..+.+..+...++.||..+.+..+....+|++
T Consensus 175 ~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~ 254 (1230)
T 1u6g_C 175 SILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLE 254 (1230)
T ss_dssp HHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCT
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999877532222367778888855544456677889999999887776678999
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccC---------------------------
Q 046417 178 KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCC--------------------------- 230 (595)
Q Consensus 178 ~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~--------------------------- 230 (595)
.+++.+.+.+.++.-.+|..++.+++.++...+..+.+|++.++|.|..++..
T Consensus 255 ~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~ 334 (1230)
T 1u6g_C 255 KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQG 334 (1230)
T ss_dssp THHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhh
Confidence 99999999998888889999999999999987777889999999999877631
Q ss_pred ----------CCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417 231 ----------DDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 231 ----------dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~ 287 (595)
..|.+|.+|+++|+.++...++.|.+|.+.+++.|-.+-.|+-..||.++.++|..+
T Consensus 335 ~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l 401 (1230)
T 1u6g_C 335 SDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSL 401 (1230)
T ss_dssp ----------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHH
T ss_pred cccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 138899999999999999777788999999899988777798999999888887644
No 12
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.64 E-value=8.9e-15 Score=167.51 Aligned_cols=254 Identities=20% Similarity=0.190 Sum_probs=197.8
Q ss_pred hHHHHHHHHHHHHHhCCc---CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCC
Q 046417 35 TLPVATAELESIARTLTQ---DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPD 111 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~---~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~d 111 (595)
.+..|+..|..++...+. ..++.+++.|.....++++.+|+.++.+|+.+++.+++.+.||++.+++++++.++|++
T Consensus 190 vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~ 269 (852)
T 4fdd_A 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQD 269 (852)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCc
Confidence 344566666555543332 23567777777766777899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhhc-C---Ccch-hccHHHHHHHh----------hc-----------CChhHHHHHHHHHHHHH
Q 046417 112 SSVRSACVAATTAMSLNIT-K---PSFS-VLSKPLIELIL----------VE-----------QDVNSQVGGAMCLAAAI 165 (595)
Q Consensus 112 s~VR~Ac~~aLg~LA~~l~-~---~~~~-~~l~PLi~aLl----------~d-----------~nk~VQ~~AA~cLaavi 165 (595)
..||..|++.+..+++... . .+.. .+++.|+..|. ++ .+-.+..+|+.||..+.
T Consensus 270 ~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la 349 (852)
T 4fdd_A 270 ENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA 349 (852)
T ss_dssp HHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHH
Confidence 9999999999999886421 0 1111 13333333331 22 23457888999999998
Q ss_pred hcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 046417 166 DAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGK 245 (595)
Q Consensus 166 E~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgs 245 (595)
+..++ ..++.+++.+..++++++.++|.+++.++|+++...+..+.+|++.++|.|...+.|+++.+|.+|+.+|+.
T Consensus 350 ~~~~~---~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~ 426 (852)
T 4fdd_A 350 NVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSR 426 (852)
T ss_dssp HHHGG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HhccH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 87543 467788999999999999999999999999999765555568999999999999999999999999999999
Q ss_pred HHHHhHH-hHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417 246 VAVFDKD-LATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 246 IA~avge-~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~ 291 (595)
++..++. ...+|...+++.|-.+--|.-+.||+.+..||..+-+..
T Consensus 427 l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 427 YAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp THHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 9998763 455666677777666656888999999999998876544
No 13
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.63 E-value=5.2e-14 Score=159.03 Aligned_cols=266 Identities=14% Similarity=0.109 Sum_probs=204.0
Q ss_pred HHHHh-hhcCCCC--hHHHHHHHHHHHHHhCCc-----CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-----
Q 046417 23 VITCL-NKLADRD--TLPVATAELESIARTLTQ-----DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG----- 89 (595)
Q Consensus 23 vl~~L-~KL~DrD--T~r~A~~~LD~lA~~L~~-----~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g----- 89 (595)
++..| .-|.|.+ .+..|+..|..++..+++ ..++.+++.|.....+ ++.+|.+++.+|+.+++.++
T Consensus 409 ~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~ 487 (876)
T 1qgr_A 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADV 487 (876)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhcccc
Confidence 44433 3446766 467899999999998764 3477888888777655 48999999999999999986
Q ss_pred ---------ccchhhHHHHHHHHHhhccCCC---hhHHHHHHHHHHHhhhhhcCCcc--h-hccHHHHHHHhh-------
Q 046417 90 ---------DSLSPHLSKMISTVSCRLRDPD---SSVRSACVAATTAMSLNITKPSF--S-VLSKPLIELILV------- 147 (595)
Q Consensus 90 ---------d~I~PhLpkIL~~IvrrLkD~d---s~VR~Ac~~aLg~LA~~l~~~~~--~-~~l~PLi~aLl~------- 147 (595)
+.+.||++.|++.+++.+.+.+ ..||.++.++++.++..+..... . .++.+++..+..
T Consensus 488 ~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 567 (876)
T 1qgr_A 488 ADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESH 567 (876)
T ss_dssp TTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred ccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999999999999874 57999999999999988753211 1 144444444421
Q ss_pred ---cCC----hhHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhhccCc--hhHHHHHHHHHHHHHHhhcccCcCcH
Q 046417 148 ---EQD----VNSQVGGAMCLAAAIDAAP-NPEVEQLRKLLPRLGKAVRIEG--FKAKAAVLGVIGSVVRVGGARSKGVL 217 (595)
Q Consensus 148 ---d~n----k~VQ~~AA~cLaaviE~a~-d~~~~~L~~Ll~rL~klL~~~~--~kaK~alLsAIgSlA~a~g~~~~~yl 217 (595)
+.+ +.++..++.||..++...+ ....+|++.+++.|..+|++.. ..++..++.+|+.++...+..|.+|+
T Consensus 568 ~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 647 (876)
T 1qgr_A 568 IQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM 647 (876)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH
T ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHH
Confidence 122 3457788999999999887 6677899999999999998774 35788899999999998888889999
Q ss_pred HhHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCC--chHHHHHHHHHHHHHhHh
Q 046417 218 DWLVPCLVEFLCCD-DWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFD--KVKIVRETMNRSLEMWKE 289 (595)
Q Consensus 218 ~~lmp~L~e~L~~d-DW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfD--KVK~VRda~~~aL~~~K~ 289 (595)
+.++|.|...+.+. ++.+|.+|+.+|+.|+.++|+.+.+|.+.++..|-..--+ --..||..+..++..+-.
T Consensus 648 ~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 648 EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH
Confidence 99999999999886 8999999999999999999988888887777765433111 123577777777765543
No 14
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.63 E-value=3e-15 Score=173.81 Aligned_cols=249 Identities=10% Similarity=0.051 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCC-----CChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhcc--
Q 046417 36 LPVATAELESIARTLTQDSFSSFLNCLQTTDSS-----SKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLR-- 108 (595)
Q Consensus 36 ~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss-----~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLk-- 108 (595)
++.+.+.|+.++..++.+.++.+++.|.+...+ .+|..|++++.+||.+++++.+...++|++|++ ++..|.
T Consensus 438 R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~ 516 (971)
T 2x1g_F 438 RQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYE 516 (971)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCcc
Confidence 456777889999988866688888888776543 689999999999999999999888899999999 555555
Q ss_pred CCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhc
Q 046417 109 DPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVR 188 (595)
Q Consensus 109 D~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~ 188 (595)
|+++.||.++||++|+|++|+.+.+ .++.+++..|+..-++.|+..||.||..+++.+...+.||++.|+..|..+++
T Consensus 517 d~~~~vr~~a~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l~~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~ 594 (971)
T 2x1g_F 517 KLNVKLLGTALETMGSYCNWLMENP--AYIPPAINLLVRGLNSSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLN 594 (971)
T ss_dssp TSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence 7899999999999999999996433 35555555443211278999999999999999877788999999999999998
Q ss_pred cC--chhHHHHHHHHHHHHHHhhc-ccCcCcHHhHHHHHHHhcc----CC--CHHHHHHHHHHHHHHHHH---hHH----
Q 046417 189 IE--GFKAKAAVLGVIGSVVRVGG-ARSKGVLDWLVPCLVEFLC----CD--DWATRKAAAEVLGKVAVF---DKD---- 252 (595)
Q Consensus 189 ~~--~~kaK~alLsAIgSlA~a~g-~~~~~yl~~lmp~L~e~L~----~d--DW~~RkaAaEaLgsIA~a---vge---- 252 (595)
.+ ..+.+..++++|+.++.+.+ ....+|+..+++.+.+.|. .. +-..+..++++|+.|+.. ++.
T Consensus 595 ~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~ 674 (971)
T 2x1g_F 595 TGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDE 674 (971)
T ss_dssp STTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCc
Confidence 74 56789999999999998643 4457888888888887764 21 333556666666666554 332
Q ss_pred ---------hHHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHh
Q 046417 253 ---------LATEYKRSCLAALETR--RFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 253 ---------~f~py~~~~I~~Le~c--rfDKVK~VRda~~~aL~~~ 287 (595)
.+.+|...+++++... .+.+-..|.+.+..++...
T Consensus 675 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~ 720 (971)
T 2x1g_F 675 QATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHA 720 (971)
T ss_dssp ---------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3455655555544332 1322335666666665553
No 15
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.61 E-value=9.5e-15 Score=168.81 Aligned_cols=251 Identities=9% Similarity=0.008 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcC----CCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCC
Q 046417 36 LPVATAELESIARTLTQDSFSSFLNCLQTTD----SSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPD 111 (595)
Q Consensus 36 ~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~----ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~d 111 (595)
++.+.+.|+.++..++.+.++.+++.+.+.. .+.+|..|++++.+||.+++++.+...++|+.|++.+. .|.+++
T Consensus 424 r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~ 502 (963)
T 2x19_B 424 RVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISN 502 (963)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCS
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCc
Confidence 4667778899998888777888888887665 56789999999999999999999888899999999554 667678
Q ss_pred hhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhc-CChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccC
Q 046417 112 SSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVE-QDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIE 190 (595)
Q Consensus 112 s~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d-~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~ 190 (595)
+.||.+++|++|++++|+.+.+ .++++++..|+.. .++.|+..||.||..+++.+...+.||++.|+..|..++...
T Consensus 503 ~~vr~~~~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l~~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~ 580 (963)
T 2x19_B 503 VQLADTVMFTIGALSEWLADHP--VMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ 580 (963)
T ss_dssp HHHHHHHHHHHHHTHHHHHHCH--HHHTTTHHHHHHHTTCGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Confidence 8999999999999999985322 2444444444321 248899999999999999887777899999999999999863
Q ss_pred --chhHHHHHHHHHHHHHHhhc-ccCcCcHHhHHHHHHHhccC-----CC---HHHHHHHHHHHHHHHHHhHH-------
Q 046417 191 --GFKAKAAVLGVIGSVVRVGG-ARSKGVLDWLVPCLVEFLCC-----DD---WATRKAAAEVLGKVAVFDKD------- 252 (595)
Q Consensus 191 --~~kaK~alLsAIgSlA~a~g-~~~~~yl~~lmp~L~e~L~~-----dD---W~~RkaAaEaLgsIA~avge------- 252 (595)
....+..++++||.++.+.+ ..+.+|++.+|+.+.+.|.. .+ -..+..++++|+.|+.+++.
T Consensus 581 ~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~ 660 (963)
T 2x19_B 581 IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDH 660 (963)
T ss_dssp CSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---
T ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 56788999999999998664 56789999999999998841 12 33455788999999988752
Q ss_pred ---------------hHHHHHHHHHH----HHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417 253 ---------------LATEYKRSCLA----ALETRRFDKVKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 253 ---------------~f~py~~~~I~----~Le~crfDKVK~VRda~~~aL~~~K~i~ 291 (595)
.+.++...+++ +|+..- +. ..|++.+..++..+-...
T Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~v~e~~~~~l~~~~~~~ 716 (963)
T 2x19_B 661 EGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL-ND-AQVVEAVCAIFEKSVKTL 716 (963)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHHT-TC-HHHHHHHHHHHHHHHHHS
T ss_pred cccccccCCCCCCCCchHHHHHHHHHHHHHHHHhcc-Cc-hHHHHHHHHHHHHHHHhh
Confidence 13444444444 454432 11 367777777766654433
No 16
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.60 E-value=3.3e-14 Score=148.27 Aligned_cols=269 Identities=14% Similarity=0.114 Sum_probs=198.3
Q ss_pred hhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcC-cHHHHHHhhhhcCCCC--ChHHHHHHHHHHHHHHHHc-ccc
Q 046417 16 TNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQD-SFSSFLNCLQTTDSSS--KSPVRKQCVNLLTLLSRSH-GDS 91 (595)
Q Consensus 16 ~~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~-~lp~fL~~L~d~~ss~--kp~vRKaaI~lLG~lAEg~-gd~ 91 (595)
-+.+|+.++..|.. .+... +.++..|-.||....++ ..+-+++.|.+...++ ++.+|+.++.+|+.+++.+ ++.
T Consensus 88 ~~~ik~~ll~~l~~-~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~ 165 (462)
T 1ibr_B 88 RREVKNYVLQTLGT-ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ 165 (462)
T ss_dssp HHHHHHHHHHHTTC-CCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHhCC-CCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchh
Confidence 35677777777654 23346 77888888888874332 3344444444433344 7899999999999999987 788
Q ss_pred chhhHHHHHHHHHhhccCC--ChhHHHHHHHHHHHhhhhhcCC--c--chhccHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046417 92 LSPHLSKMISTVSCRLRDP--DSSVRSACVAATTAMSLNITKP--S--FSVLSKPLIELILVEQDVNSQVGGAMCLAAAI 165 (595)
Q Consensus 92 I~PhLpkIL~~IvrrLkD~--ds~VR~Ac~~aLg~LA~~l~~~--~--~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaavi 165 (595)
+.+|++.+++.+++.|+|+ ++.||.+++++++.+..++.+. . +..++.+.+..++.+.+..+...++.||..++
T Consensus 166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999 6899999999999976554211 1 11233444444446778889999999999999
Q ss_pred hcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhh------------------ccc---CcCcHHhHHHH
Q 046417 166 DAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG------------------GAR---SKGVLDWLVPC 223 (595)
Q Consensus 166 E~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~------------------g~~---~~~yl~~lmp~ 223 (595)
+..++...+|++ .+++.+...+++..-.++..++..++.++... ... +.+|++.++|.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 325 (462)
T 1ibr_B 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (462)
T ss_dssp HHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHH
Confidence 987665567888 89998888898888888888899888887642 011 12356788898
Q ss_pred HHHhcc-------CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417 224 LVEFLC-------CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKE 289 (595)
Q Consensus 224 L~e~L~-------~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~ 289 (595)
|.+.+. +++|..|.+|+++|+.++..+|+.+. +.+++.+..+-.|.-..||+++..+|..+-+
T Consensus 326 l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~---~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~ 395 (462)
T 1ibr_B 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV---PHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (462)
T ss_dssp HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH---HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHH---HHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 888874 35799999999999999999985332 2344444444447778999999888877654
No 17
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.54 E-value=1.7e-13 Score=142.97 Aligned_cols=230 Identities=13% Similarity=0.148 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHHhCC----cCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH-HHHHHHHhhccC
Q 046417 36 LPVATAELESIARTLT----QDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS-KMISTVSCRLRD 109 (595)
Q Consensus 36 ~r~A~~~LD~lA~~L~----~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp-kIL~~IvrrLkD 109 (595)
+..|+..|-.++..+. ... ...+++.|.+...++++.+|+.++.+|+.+++.+++.+.+|++ .+++.++..++|
T Consensus 191 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 270 (462)
T 1ibr_B 191 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS 270 (462)
T ss_dssp HHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556666655433222 111 2345777776667778999999999999999999999999999 999999999999
Q ss_pred CChhHHHHHHHHHHHhhhhhc-----------------CC--cch-hccHHHHHHHh---hc-------CChhHHHHHHH
Q 046417 110 PDSSVRSACVAATTAMSLNIT-----------------KP--SFS-VLSKPLIELIL---VE-------QDVNSQVGGAM 159 (595)
Q Consensus 110 ~ds~VR~Ac~~aLg~LA~~l~-----------------~~--~~~-~~l~PLi~aLl---~d-------~nk~VQ~~AA~ 159 (595)
.+..||..+++.++.+++... .. ... .++..++..|+ .+ .+..+..+|+.
T Consensus 271 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~ 350 (462)
T 1ibr_B 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV 350 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHH
Confidence 999999999999999987631 00 011 12233333332 22 23467889999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc-ccCcCcHHhHHHHHHHhccCCCHHHHHH
Q 046417 160 CLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG-ARSKGVLDWLVPCLVEFLCCDDWATRKA 238 (595)
Q Consensus 160 cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g-~~~~~yl~~lmp~L~e~L~~dDW~~Rka 238 (595)
||..+++..++ .+++.+++.+..+|++++.++|.+++-++|+++.... ..+.++++.++|.|...+.++++.+|.+
T Consensus 351 ~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~ 427 (462)
T 1ibr_B 351 CLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDT 427 (462)
T ss_dssp HHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 99999998764 4677899999999999999999999999999886333 3356788999999999999999999999
Q ss_pred HHHHHHHHHHHhHHhH--HHHHHHHHHHHHhc
Q 046417 239 AAEVLGKVAVFDKDLA--TEYKRSCLAALETR 268 (595)
Q Consensus 239 AaEaLgsIA~avge~f--~py~~~~I~~Le~c 268 (595)
|+.+|+.++...++.+ .+|.+.+++.|-.+
T Consensus 428 a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~ 459 (462)
T 1ibr_B 428 AAWTVGRICELLPEAAINDVYLAPLLQCLIEG 459 (462)
T ss_dssp HHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 9999999999988654 57888888876644
No 18
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.53 E-value=3.4e-14 Score=168.02 Aligned_cols=228 Identities=7% Similarity=-0.093 Sum_probs=179.7
Q ss_pred hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCC--CCChHHHHHHHHHHHHHHHHccc-cchhhHHHHHHHHHhhcc---
Q 046417 35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDS--SSKSPVRKQCVNLLTLLSRSHGD-SLSPHLSKMISTVSCRLR--- 108 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~s--s~kp~vRKaaI~lLG~lAEg~gd-~I~PhLpkIL~~IvrrLk--- 108 (595)
.++..-+.|..++.-++++.++.+++.|.+... +.+|..|++++.+||.+++++.+ ...++|+.+++.++..+.
T Consensus 429 ~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~ 508 (1023)
T 4hat_C 429 LYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKR 508 (1023)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccc
Confidence 344555777777777777778899998876543 36799999999999999999874 478999999999999876
Q ss_pred --CCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh---cCChhHHHHHHHHHHHHHhcCCCch--------HHH
Q 046417 109 --DPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV---EQDVNSQVGGAMCLAAAIDAAPNPE--------VEQ 175 (595)
Q Consensus 109 --D~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~---d~nk~VQ~~AA~cLaaviE~a~d~~--------~~~ 175 (595)
|+.+.||+.+||++|++++|+...+ .+|+|++..|+. +.++.||..||.||..+++.+.... .||
T Consensus 509 ~~d~k~~v~~t~~~~lGry~~wl~~~~--~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~ 586 (1023)
T 4hat_C 509 GKDNKAVVASDIMYVVGQYPRFLKAHW--NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPF 586 (1023)
T ss_dssp SHHHHHHHHHHHHHHHHTCHHHHHHCH--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCH
T ss_pred cCcchHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchh
Confidence 5777899999999999999995322 478888888864 5678899999999999999864333 369
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcc--cCcCcHHhHHHHHHHhccC---------CCH------HHHHH
Q 046417 176 LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGA--RSKGVLDWLVPCLVEFLCC---------DDW------ATRKA 238 (595)
Q Consensus 176 L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~--~~~~yl~~lmp~L~e~L~~---------dDW------~~Rka 238 (595)
++.|+..+...+..-..+....++++||+++.+.+. .-..|++.+|+.+.+.|.. +-| ..-..
T Consensus 587 ~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~ 666 (1023)
T 4hat_C 587 IQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIAN 666 (1023)
T ss_dssp HHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHH
Confidence 999999999988766666778889999999986542 2456888899998888742 112 23455
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHH
Q 046417 239 AAEVLGKVAVFDKDLATEYKRSCLAA 264 (595)
Q Consensus 239 AaEaLgsIA~avge~f~py~~~~I~~ 264 (595)
.++|++++|.++|..|.|++..+...
T Consensus 667 il~~~~~v~~~lg~~f~~~~~~i~~~ 692 (1023)
T 4hat_C 667 IIKTNVAVCTSMGADFYPQLGHIYYN 692 (1023)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 68999999999999888988654433
No 19
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=1e-12 Score=128.77 Aligned_cols=190 Identities=14% Similarity=0.214 Sum_probs=154.0
Q ss_pred hhhcCCCC--hHHHHHHHHHHHHHhCC---cCcHHHHHHhhhhcCC-CCChHHHHHHHHHHHHHHHHccccchhhHHHHH
Q 046417 27 LNKLADRD--TLPVATAELESIARTLT---QDSFSSFLNCLQTTDS-SSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMI 100 (595)
Q Consensus 27 L~KL~DrD--T~r~A~~~LD~lA~~L~---~~~lp~fL~~L~d~~s-s~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL 100 (595)
+..+.|.| .++.|+..|..++..-+ ...+..+++.|..... +.++.+|.+++.+||.++.+.+..+.+|++.|+
T Consensus 21 ~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~il 100 (242)
T 2qk2_A 21 YDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACV 100 (242)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred HhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34555666 77889999999988632 2335566666666553 567899999999999999999999999999999
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC-C-chHHHHHH
Q 046417 101 STVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP-N-PEVEQLRK 178 (595)
Q Consensus 101 ~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~-d-~~~~~L~~ 178 (595)
|.|+.++.|+.+.||++++.+|..++..+ +...+++.|+.+| .+.++.++..++..|..+++... + ...+|++.
T Consensus 101 p~ll~~l~d~~~~vr~~a~~aL~~~~~~~---~~~~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~ 176 (242)
T 2qk2_A 101 PSLLEKFKEKKPNVVTALREAIDAIYAST---SLEAQQESIVESL-SNKNPSVKSETALFIARALTRTQPTALNKKLLKL 176 (242)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHH
Confidence 99999999999999999999999998755 2223666666666 67789999999999999888753 3 24689999
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHHHHHhhccc-CcCcHHhH
Q 046417 179 LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR-SKGVLDWL 220 (595)
Q Consensus 179 Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~-~~~yl~~l 220 (595)
++|.|.++|++....+|.+++.+++.++.+.|.. +.+|++.+
T Consensus 177 l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 177 LTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 9999999999999999999999999999866543 56666543
No 20
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.44 E-value=4.5e-13 Score=157.78 Aligned_cols=223 Identities=9% Similarity=-0.061 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCC--CCChHHHHHHHHHHHHHHHHccccc-hhhHHHHHHHHHhhc-----
Q 046417 36 LPVATAELESIARTLTQDSFSSFLNCLQTTDS--SSKSPVRKQCVNLLTLLSRSHGDSL-SPHLSKMISTVSCRL----- 107 (595)
Q Consensus 36 ~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~s--s~kp~vRKaaI~lLG~lAEg~gd~I-~PhLpkIL~~IvrrL----- 107 (595)
++.+...|+.++...+.+.++.+++.|..... ..+|..|++++.+||.+++++.+.. .++++.|+++++...
T Consensus 430 ~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~ 509 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRG 509 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhcc
Confidence 56788899999977766668888888877653 4689999999999999999887654 467999999988743
Q ss_pred cCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcCCCchH--------HHH
Q 046417 108 RDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAAPNPEV--------EQL 176 (595)
Q Consensus 108 kD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a~d~~~--------~~L 176 (595)
+|+.+.||..+||++|+|++|+...+ .++.+++..|+ .+.++.||..||.||..+++.+..... ||+
T Consensus 510 ~~~~~~v~~~~~~~lgry~~~~~~~~--~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~ 587 (1049)
T 3m1i_C 510 KDNKAVVASDIMYVVGQYPRFLKAHW--NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI 587 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCH--HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH
Confidence 25778889889999999999985432 36666666654 467899999999999999998654444 899
Q ss_pred HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc--ccCcCcHHhHHHHHHHhccC------------CCHHHH---HHH
Q 046417 177 RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG--ARSKGVLDWLVPCLVEFLCC------------DDWATR---KAA 239 (595)
Q Consensus 177 ~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g--~~~~~yl~~lmp~L~e~L~~------------dDW~~R---kaA 239 (595)
+.|+..+..++..-..+-...++++||.++.+.+ ....+|+..+|+.+.+.|.. .|-... ...
T Consensus 588 ~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 667 (1049)
T 3m1i_C 588 QTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANI 667 (1049)
T ss_dssp HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHH
Confidence 9999999999977555566778899999998665 34678999999998877631 021111 345
Q ss_pred HHHHHHHHHHhHHhHHHHHHH
Q 046417 240 AEVLGKVAVFDKDLATEYKRS 260 (595)
Q Consensus 240 aEaLgsIA~avge~f~py~~~ 260 (595)
+.|++.++..+|..|.|+...
T Consensus 668 l~~~~~~~~~l~~~f~p~~~~ 688 (1049)
T 3m1i_C 668 IKTNVAVCTSMGADFYPQLGH 688 (1049)
T ss_dssp HHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 678888999999888887754
No 21
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.41 E-value=2.6e-12 Score=151.43 Aligned_cols=248 Identities=10% Similarity=0.065 Sum_probs=181.1
Q ss_pred HHHHHHHhCCcCc-HH----HHHHhhhhcC---CCCChHHHHHHHHHHHHHHHHcccc------chhhHHHHHHHHHhhc
Q 046417 42 ELESIARTLTQDS-FS----SFLNCLQTTD---SSSKSPVRKQCVNLLTLLSRSHGDS------LSPHLSKMISTVSCRL 107 (595)
Q Consensus 42 ~LD~lA~~L~~~~-lp----~fL~~L~d~~---ss~kp~vRKaaI~lLG~lAEg~gd~------I~PhLpkIL~~IvrrL 107 (595)
.|......+.++. +. .+.+.|.+.. .+.+|..+++++.+|+.++|++.+. ..+++|+|++++++.+
T Consensus 420 ~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll 499 (980)
T 3ibv_A 420 IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVT 499 (980)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHH
Confidence 4444444444444 66 5666665554 2456999999999999999999752 2368888998888887
Q ss_pred c-----CCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh-----cCChhHHHHHHHHHHHHHhcCCCchHHHHH
Q 046417 108 R-----DPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV-----EQDVNSQVGGAMCLAAAIDAAPNPEVEQLR 177 (595)
Q Consensus 108 k-----D~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~-----d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~ 177 (595)
+ ++.+.||.++|+++|++++|+...+ .++.|++.+++. ++++.||.+||++|..+|+.+...+.+|++
T Consensus 500 ~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~--~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~ 577 (980)
T 3ibv_A 500 TSQVCRHPHPLVQLLYMEILVRYASFFDYES--AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTE 577 (980)
T ss_dssp HSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC--TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc--hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHH
Confidence 6 8999999999999999999996533 488999999875 567889999999999999998877789999
Q ss_pred HHHHHHHHhhccC---------------------chhHHHHHHHHHHHHHHhhcc---cCcCcHHhHHHHHHHhcc----
Q 046417 178 KLLPRLGKAVRIE---------------------GFKAKAAVLGVIGSVVRVGGA---RSKGVLDWLVPCLVEFLC---- 229 (595)
Q Consensus 178 ~Ll~rL~klL~~~---------------------~~kaK~alLsAIgSlA~a~g~---~~~~yl~~lmp~L~e~L~---- 229 (595)
.|+..+..+|.-. .|.-+..++++||.++.+.+. .-..|+..++++|.+.|.
T Consensus 578 ~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~ 657 (980)
T 3ibv_A 578 SSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALS 657 (980)
T ss_dssp HHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998888621 133456688999999987542 235788888888777653
Q ss_pred ---CC-CHHHHH-HHHHHHHHHHHHh----------HHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417 230 ---CD-DWATRK-AAAEVLGKVAVFD----------KDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 230 ---~d-DW~~Rk-aAaEaLgsIA~av----------ge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~ 293 (595)
.. +-..+. -.+-+||.+|... .+.|.+-.+.++.+|+.. -+...||+++..+++..-.+-|.
T Consensus 658 ~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~--~~~~~irea~~~~~~r~i~~lg~ 734 (980)
T 3ibv_A 658 SDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRM--GFNEDIRGAVRFTSGRIINVVGP 734 (980)
T ss_dssp TSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHS--CCSHHHHHHHHHHHHHHTTTTHH
T ss_pred hcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHccH
Confidence 11 212211 2344556666543 223444455666777754 56789999999999888776654
No 22
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.38 E-value=6.9e-12 Score=119.28 Aligned_cols=190 Identities=21% Similarity=0.230 Sum_probs=143.0
Q ss_pred CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc
Q 046417 51 TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT 130 (595)
Q Consensus 51 ~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~ 130 (595)
+++.++.++..|.+ +++.+|..++.+|+.+.. +..++.+++.|+|+++.||.+++++||.+...
T Consensus 17 ~~~~~~~L~~~L~~----~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-- 80 (211)
T 3ltm_A 17 DPEKVEMYIKNLQD----DSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE-- 80 (211)
T ss_dssp CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--
T ss_pred CHhHHHHHHHHHcC----CCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH--
Confidence 46668888888763 579999999999987643 35677888999999999999999999998742
Q ss_pred CCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc
Q 046417 131 KPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG 210 (595)
Q Consensus 131 ~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g 210 (595)
..+..|+..| .+.++.|+..|+.+|..+.+. ..++.|.++|++++..+|..++.+++.+. .
T Consensus 81 -----~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~ 141 (211)
T 3ltm_A 81 -----RAVEPLIKAL-KDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIG---D 141 (211)
T ss_dssp -----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC---C
T ss_pred -----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCCCHHHHHHHHHHHHHcC---C
Confidence 2456677776 788999999999999877531 34566777889999999998888888652 1
Q ss_pred ccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhc
Q 046417 211 ARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEV 290 (595)
Q Consensus 211 ~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i 290 (595)
+..++.|.+++.++++.+|..|+++|+.+.. +. ..+.+...|+ |.-..||..+.++|..+..-
T Consensus 142 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~~---~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 142 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---ER---VRAAMEKLAE----TGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---HH---HHHHHHHHHH----HCCHHHHHHHHHHHHC----
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---hh---HHHHHHHHHh----CCCHHHHHHHHHHHHhcCCC
Confidence 3467889999999999999999999999843 11 2223334454 66788999999998877654
Q ss_pred CC
Q 046417 291 PG 292 (595)
Q Consensus 291 ~~ 292 (595)
++
T Consensus 205 ~~ 206 (211)
T 3ltm_A 205 NH 206 (211)
T ss_dssp --
T ss_pred CC
Confidence 43
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.38 E-value=1.3e-11 Score=128.64 Aligned_cols=249 Identities=13% Similarity=0.089 Sum_probs=178.0
Q ss_pred hHHHHHHHHHHHHHhC-C-------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHHHh
Q 046417 35 TLPVATAELESIARTL-T-------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTVSC 105 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L-~-------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~Ivr 105 (595)
.++.|+..|-.|+..- + ...++.++..|. +.++.+|..++.+|+.+++...+.....+ ..+++.+++
T Consensus 166 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 241 (450)
T 2jdq_A 166 MTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF----VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE 241 (450)
T ss_dssp HHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT----CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHH
Confidence 6777888888888654 2 123555555554 45789999999999999986544332211 357888999
Q ss_pred hccCCChhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH-HHHH
Q 046417 106 RLRDPDSSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL-RKLL 180 (595)
Q Consensus 106 rLkD~ds~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L-~~Ll 180 (595)
.|+++++.||.+++++|+.++...... ... ..++.|+..| .+.++.++..|+.||..+..+..+....++ ..++
T Consensus 242 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l 320 (450)
T 2jdq_A 242 LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANIF 320 (450)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred HHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 999999999999999999998643110 001 1566666666 677889999999999999875433222334 2588
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcC-cH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHh-----
Q 046417 181 PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKG-VL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDL----- 253 (595)
Q Consensus 181 ~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~-yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~----- 253 (595)
+.|+.+|+++...+|..++.+|+.++..+...... ++ ..++|.|.+.+.+.+|.+|..|+++|+.++......
T Consensus 321 ~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~ 400 (450)
T 2jdq_A 321 PALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG 400 (450)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc
Confidence 99999999999999999999999988643211112 22 358999999999999999999999999998855321
Q ss_pred --HHHHHHHH-----HHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417 254 --ATEYKRSC-----LAALETRRFDKVKIVRETMNRSLEMWK 288 (595)
Q Consensus 254 --f~py~~~~-----I~~Le~crfDKVK~VRda~~~aL~~~K 288 (595)
+.+|...+ ++.|+....+.-..||+.+..+|..+=
T Consensus 401 ~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 401 TGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp SCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 23454433 556666666777788888877777554
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.37 E-value=1.7e-11 Score=127.91 Aligned_cols=252 Identities=16% Similarity=0.114 Sum_probs=179.1
Q ss_pred hHHHHHHHHHHHHHhCC--------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc-cccchhhHHHHHHHHHh
Q 046417 35 TLPVATAELESIARTLT--------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH-GDSLSPHLSKMISTVSC 105 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~--------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~-gd~I~PhLpkIL~~Ivr 105 (595)
.+..|+..|-.|+..-+ ...++.++..|.+ +.++.+|+.++.+|+.++.+. +..-...+..+++.+++
T Consensus 123 vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 199 (450)
T 2jdq_A 123 VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK---QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSW 199 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS---CCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC---CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 56778888888876432 3457888887763 356899999999999999876 43334455788999999
Q ss_pred hccCCChhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHH
Q 046417 106 RLRDPDSSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLL 180 (595)
Q Consensus 106 rLkD~ds~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll 180 (595)
.|++.++.||..++|+|+.++....+. ... ..+++|+..| .+.+..++..|+.+|..+....+.....++. .++
T Consensus 200 ~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 278 (450)
T 2jdq_A 200 LLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL 278 (450)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHH
T ss_pred HHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-CCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccH
Confidence 999999999999999999998643110 011 2677788777 6788899999999999998754322112222 488
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh-HHhHHHHH
Q 046417 181 PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD-KDLATEYK 258 (595)
Q Consensus 181 ~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av-ge~f~py~ 258 (595)
+.|..+|++++..++..++.+|+.++.........++ ..++|.|.+.|.+.+..+|+.|+-+|+.++... .+....+.
T Consensus 279 ~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~ 358 (450)
T 2jdq_A 279 QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV 358 (450)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999888999999999988742111111122 357889999999999999999999999998752 22222211
Q ss_pred -HHHHHHHHhccCCchHHHHHHHHHHHHHhHhc
Q 046417 259 -RSCLAALETRRFDKVKIVRETMNRSLEMWKEV 290 (595)
Q Consensus 259 -~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i 290 (595)
..+++.|-..--|+-..||..+..+|..+-..
T Consensus 359 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 359 ELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 12333433333355678899888888766543
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.36 E-value=1.7e-11 Score=132.27 Aligned_cols=252 Identities=15% Similarity=0.126 Sum_probs=181.6
Q ss_pred hHHHHHHHHHHHHHhCCcCc---HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHHHhhccCC
Q 046417 35 TLPVATAELESIARTLTQDS---FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTVSCRLRDP 110 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~---lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~IvrrLkD~ 110 (595)
..+.|+..|-.|+..-+... +..+++.|.....+.++.+|..++.+|+.++.+..+.+...+ ..+++.++..|+++
T Consensus 219 v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~ 298 (528)
T 4b8j_A 219 MLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP 298 (528)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC
Confidence 56677788888877643211 223344444444556799999999999999977655433222 25788999999999
Q ss_pred ChhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcC-ChhHHHHHHHHHHHHHhcCCCchHHHH-HHHHHHHH
Q 046417 111 DSSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQ-DVNSQVGGAMCLAAAIDAAPNPEVEQL-RKLLPRLG 184 (595)
Q Consensus 111 ds~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~-nk~VQ~~AA~cLaaviE~a~d~~~~~L-~~Ll~rL~ 184 (595)
++.||..|+++|+.|+...... ... ..+++|+..| .+. +..++..||.+|..+.....+.....+ ..++|.|+
T Consensus 299 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~ 377 (528)
T 4b8j_A 299 SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLL-TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLV 377 (528)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHH-cCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
Confidence 9999999999999999632110 011 1567777777 566 889999999999999875322222222 25789999
Q ss_pred HhhccCchhHHHHHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH-------h--
Q 046417 185 KAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD-------L-- 253 (595)
Q Consensus 185 klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge-------~-- 253 (595)
.+|.+....++..++.+|+.++..+......|+ ..+++.|.++|.+.++.++..|+++|+.|...... .
T Consensus 378 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 457 (528)
T 4b8j_A 378 NLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVN 457 (528)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 999999999999999999999876533333444 45799999999999999999999999999876543 1
Q ss_pred -HHHHHH--HHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417 254 -ATEYKR--SCLAALETRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 254 -f~py~~--~~I~~Le~crfDKVK~VRda~~~aL~~~ 287 (595)
+..+.. .++..|+.+..+.-..|++.+...|+.+
T Consensus 458 ~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 458 VFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 222222 2366777787777788898888877754
No 26
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.35 E-value=2.6e-11 Score=114.47 Aligned_cols=183 Identities=21% Similarity=0.239 Sum_probs=138.9
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF 134 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~ 134 (595)
.+.++..|. ++++.+|..++.+|+.+.. +..++.+++.|+|+++.||..++++|+.+...
T Consensus 16 ~~~~i~~L~----~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~------ 75 (201)
T 3ltj_A 16 VEMYIKNLQ----DDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE------ 75 (201)
T ss_dssp HHHHHHHTT----CSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------
T ss_pred hHHHHHHhc----CCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH------
Confidence 555555554 4679999999999987653 24567888899999999999999999988642
Q ss_pred hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCc
Q 046417 135 SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSK 214 (595)
Q Consensus 135 ~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~ 214 (595)
..+..|+..| .+.++.|+..|+.+|..+... ..++.|.++|++++..+|.+++.++|.+. .
T Consensus 76 -~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~---- 136 (201)
T 3ltj_A 76 -RAVEPLIKAL-KDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIG---D---- 136 (201)
T ss_dssp -GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHT---C----
T ss_pred -HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC---C----
Confidence 2456677766 788999999999999886431 24566777888999999998888888653 1
Q ss_pred CcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417 215 GVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKE 289 (595)
Q Consensus 215 ~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~ 289 (595)
+..++.|.+++.+++|.+|..|+++|+.+.. +. ..+.+...++ |.-..||.++.++|..+++
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~~---~~~~L~~~l~----d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG---ER---VRAAMEKLAE----TGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---HH---HHHHHHHHHH----HCCHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---hh---HHHHHHHHHh----CCCHHHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999832 11 2223334454 5678999999999987664
No 27
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.35 E-value=1.6e-11 Score=133.03 Aligned_cols=250 Identities=12% Similarity=0.106 Sum_probs=182.6
Q ss_pred ChHHHHHHHHHHHHHhC-C-------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH-HHHHHHH
Q 046417 34 DTLPVATAELESIARTL-T-------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS-KMISTVS 104 (595)
Q Consensus 34 DT~r~A~~~LD~lA~~L-~-------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp-kIL~~Iv 104 (595)
+..+.|+..|-.|+..- + ...++.++..| .+.++.+|..++.+|+.++.+..+.+...+. .+++.++
T Consensus 230 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL----~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv 305 (530)
T 1wa5_B 230 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI----YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305 (530)
T ss_dssp HHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT----TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH----cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHH
Confidence 35677888888888654 2 12355555555 3457899999999999999877655444443 6788999
Q ss_pred hhccCCChhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH-HHH
Q 046417 105 CRLRDPDSSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL-RKL 179 (595)
Q Consensus 105 rrLkD~ds~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L-~~L 179 (595)
..|+++++.||..|+++|+.|+...... ... .++++|+..| .+.+..++..|+.||..+.....+....++ ..+
T Consensus 306 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~ 384 (530)
T 1wa5_B 306 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVIDANL 384 (530)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred HHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 9999999999999999999998532110 011 2566666666 677889999999999999875433222333 247
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHHHHHhhcc--cCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHh--
Q 046417 180 LPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGA--RSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDL-- 253 (595)
Q Consensus 180 l~rL~klL~~~~~kaK~alLsAIgSlA~a~g~--~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~-- 253 (595)
++.|+.+|.++...++..++.+|+.++..+.. ....++ ..++|.|..++.+.+..+|..|+.+|..|+......
T Consensus 385 l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~ 464 (530)
T 1wa5_B 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE 464 (530)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhh
Confidence 89999999999999999999999999876432 212222 238999999999999999999999999998765321
Q ss_pred -----HHHHHH-----HHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417 254 -----ATEYKR-----SCLAALETRRFDKVKIVRETMNRSLEMWK 288 (595)
Q Consensus 254 -----f~py~~-----~~I~~Le~crfDKVK~VRda~~~aL~~~K 288 (595)
..+|.. .++..|+....|.-.-||+.+..+|..+=
T Consensus 465 ~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 465 ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred cccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 123332 24778888888888889998777776443
No 28
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.34 E-value=2.3e-11 Score=131.84 Aligned_cols=253 Identities=15% Similarity=0.127 Sum_probs=180.7
Q ss_pred ChHHHHHHHHHHHHHhC--------CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc-cccchhhHHHHHHHHH
Q 046417 34 DTLPVATAELESIARTL--------TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH-GDSLSPHLSKMISTVS 104 (595)
Q Consensus 34 DT~r~A~~~LD~lA~~L--------~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~-gd~I~PhLpkIL~~Iv 104 (595)
+.+..|+..|-.|+..- ....++.++..|.+ .++.+|+.++.+|+.++.+. +..-......+++.++
T Consensus 188 ~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~ 263 (530)
T 1wa5_B 188 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS----NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA 263 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS----CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc----CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHH
Confidence 35566777777777542 13457888887765 56899999999999999877 4444566778999999
Q ss_pred hhccCCChhHHHHHHHHHHHhhhhhcC--Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HH
Q 046417 105 CRLRDPDSSVRSACVAATTAMSLNITK--PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KL 179 (595)
Q Consensus 105 rrLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~L 179 (595)
+.|.++++.||..++++|+.|+..... .... ..++.|+..| .+.+..++..|+.+|..++...+.....++. .+
T Consensus 264 ~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 342 (530)
T 1wa5_B 264 KLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV 342 (530)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHH-CCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcch
Confidence 999999999999999999999964211 0111 2566677766 6788899999999999988654322222332 58
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH--hHHH
Q 046417 180 LPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD--LATE 256 (595)
Q Consensus 180 l~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge--~f~p 256 (595)
++.|..+|.++...++..++.+|+.++.........++ ..++|.|.+.|.+.++.+|..|+.+|+.++..... ....
T Consensus 343 l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~ 422 (530)
T 1wa5_B 343 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR 422 (530)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 89999999999888998888899887742211111222 35788999999889999999999999999886432 1112
Q ss_pred HH--HHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417 257 YK--RSCLAALETRRFDKVKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 257 y~--~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~ 291 (595)
+. ..+++.|...-.++-..||..+..+|..+-...
T Consensus 423 ~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 423 YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 21 124455544444667889999888887765543
No 29
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.1e-10 Score=116.69 Aligned_cols=199 Identities=11% Similarity=0.061 Sum_probs=164.5
Q ss_pred chhhHHHHHHHHHhhccCCChhHHHHHHHHHHH-hhhhhcC-----CcchhccHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046417 92 LSPHLSKMISTVSCRLRDPDSSVRSACVAATTA-MSLNITK-----PSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAI 165 (595)
Q Consensus 92 I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~-LA~~l~~-----~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaavi 165 (595)
|.+.||+ -+...+++++..-|.++..+|+. +.+.+.+ ..+..++.-|...|-.|.|..|...|+.||..+.
T Consensus 13 i~~kl~~---~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la 89 (249)
T 2qk1_A 13 ILDKLPK---DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELIC 89 (249)
T ss_dssp CGGGSCT---THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred hhhhCCh---hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4555555 56677899999999999999999 8754322 1112245555555535889999999999999999
Q ss_pred hcCC-CchH-HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc-ccCcCcHHhHHHHHHHhccCCCHHHHHHHHHH
Q 046417 166 DAAP-NPEV-EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG-ARSKGVLDWLVPCLVEFLCCDDWATRKAAAEV 242 (595)
Q Consensus 166 E~a~-d~~~-~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g-~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEa 242 (595)
++.. .... +|...++|.++..+++....++.++..|+-+++.... ....+|++.+|+.|.+.|.+..|++|..++.+
T Consensus 90 ~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~ 169 (249)
T 2qk1_A 90 DKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQL 169 (249)
T ss_dssp HHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 9877 6676 8999999999999999888899888889998887543 22235699999999999999999999999999
Q ss_pred HHHHHHHhH---HhHHHHH-HHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417 243 LGKVAVFDK---DLATEYK-RSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 243 LgsIA~avg---e~f~py~-~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~ 293 (595)
|+.++...+ ..|.+|. +.+++.|..|-.|.-+.||+++.++|..+-.+-|.
T Consensus 170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 999999887 5688898 89999999999999999999999999998887775
No 30
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.27 E-value=6.4e-11 Score=127.84 Aligned_cols=253 Identities=13% Similarity=0.102 Sum_probs=180.0
Q ss_pred hHHHHHHHHHHHHHhCC--------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhh
Q 046417 35 TLPVATAELESIARTLT--------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCR 106 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~--------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr 106 (595)
.+..|+..|-.|+..-+ ...+++++.+|.. +.++.+|+.++.+|+.++...+.........+++.+++.
T Consensus 176 v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~---~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~l 252 (528)
T 4b8j_A 176 VREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE---HTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARL 252 (528)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT---TCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc---CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHH
Confidence 56677888888775422 2347777777743 357899999999999999987666666778899999999
Q ss_pred ccCCChhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH-HHHHH
Q 046417 107 LRDPDSSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL-RKLLP 181 (595)
Q Consensus 107 LkD~ds~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L-~~Ll~ 181 (595)
|+++++.|+..++++|+.|+...... ... ..+++|+..| .+.+..++..|+.+|..++...+.....++ ..+++
T Consensus 253 L~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~ 331 (528)
T 4b8j_A 253 IHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALP 331 (528)
T ss_dssp TTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH-cCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHH
Confidence 99999999999999999999543110 011 2667777777 677888999999999999875432222233 34789
Q ss_pred HHHHhhccC-chhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHH-
Q 046417 182 RLGKAVRIE-GFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYK- 258 (595)
Q Consensus 182 rL~klL~~~-~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~- 258 (595)
.|..+|.++ ...++..++.+|+.++.........++ ..++|.|.+.|.+.++.+|..|+.+|+.++.........|.
T Consensus 332 ~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~ 411 (528)
T 4b8j_A 332 CLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLV 411 (528)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999988 888888888889888742111111111 35789999999988999999999999999887322222222
Q ss_pred -HHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417 259 -RSCLAALETRRFDKVKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 259 -~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~ 291 (595)
..+++.|-.+-.++-..|+..+..+|..+-...
T Consensus 412 ~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 412 SEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 234444444444556677888788877665433
No 31
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.24 E-value=1.6e-10 Score=110.82 Aligned_cols=235 Identities=15% Similarity=0.111 Sum_probs=165.4
Q ss_pred cHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC-
Q 046417 54 SFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK- 131 (595)
Q Consensus 54 ~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~- 131 (595)
.++.++..|.+ +++.+|..++.+|+.++....+.....+ ..+++.+++.|+++++.||..++++|+.++..-.+
T Consensus 3 ~i~~L~~~L~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 78 (252)
T 4hxt_A 3 DVEKLVKLLTS----TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78 (252)
T ss_dssp HHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 36677777764 4589999999999999988764433332 25789999999999999999999999999964211
Q ss_pred -Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417 132 -PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVR 207 (595)
Q Consensus 132 -~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~ 207 (595)
.... ..+++|+..| .+.+..++..|+.+|..+....++.....+. ..++.|.++|+++...++..++.+++.++.
T Consensus 79 ~~~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 79 IKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 0011 1567777776 6788999999999999998643222222222 478999999999998899998899998874
Q ss_pred hhcccCcC-cHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHH-HHHHHHHHhccCCchHHHHHHHHHHHH
Q 046417 208 VGGARSKG-VLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYK-RSCLAALETRRFDKVKIVRETMNRSLE 285 (595)
Q Consensus 208 a~g~~~~~-yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~-~~~I~~Le~crfDKVK~VRda~~~aL~ 285 (595)
........ .-..++|.|.+++.++++.+|..|+.+|+.++....+....+. ..+++.|-..--+.-..||..+..+|.
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 32111001 1134789999999999999999999999999863322222111 223333333333555689999888888
Q ss_pred HhHhcCCC
Q 046417 286 MWKEVPGV 293 (595)
Q Consensus 286 ~~K~i~~~ 293 (595)
-+..-...
T Consensus 238 ~l~~~~~~ 245 (252)
T 4hxt_A 238 NIKSGGWL 245 (252)
T ss_dssp HHHHTCBC
T ss_pred HHHcCCCc
Confidence 87765543
No 32
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.24 E-value=4.6e-10 Score=105.81 Aligned_cols=183 Identities=17% Similarity=0.209 Sum_probs=139.5
Q ss_pred hHHHHHHHHHhhhcCCCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh
Q 046417 17 NDLKQRVITCLNKLADRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP 94 (595)
Q Consensus 17 ~~lk~rvl~~L~KL~DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P 94 (595)
......+++.| .|.| .+..|+..|-.+. +++.++.++..|.+ +++.+|..++.+||.+..
T Consensus 13 ~~~~~~~i~~L---~~~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNL---QDDSYYVRRAAAYALGKIG---DERAVEPLIKALKD----EDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHHT---TCSCHHHHHHHHHHHHHHC---CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCC--------
T ss_pred CcchHHHHHHh---cCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHcC----CCHHHHHHHHHHHHhhCC--------
Confidence 45555555555 4444 5556666665443 34668888888753 579999999999988742
Q ss_pred hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHH
Q 046417 95 HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVE 174 (595)
Q Consensus 95 hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~ 174 (595)
+..++.+++.|.|+++.||.+++++|+.+... ..+..|+..| .+.++.|+..|+.+|..+.+
T Consensus 75 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-------- 136 (201)
T 3ltj_A 75 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-------- 136 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC--------
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC--------
Confidence 25567888899999999999999999998652 1455666666 78899999999999988753
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 046417 175 QLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVA 247 (595)
Q Consensus 175 ~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA 247 (595)
+..++.|..+|++++..+|.+++.+++.+. -+..++.|.+++.++++.+|.+|+++|+.|.
T Consensus 137 --~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 --ERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 134566778888899899999888888762 1467888999999999999999999999874
No 33
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.24 E-value=7.1e-11 Score=113.19 Aligned_cols=214 Identities=15% Similarity=0.129 Sum_probs=152.8
Q ss_pred ChHHHHHHHHHHHHHhCC--------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHHH
Q 046417 34 DTLPVATAELESIARTLT--------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTVS 104 (595)
Q Consensus 34 DT~r~A~~~LD~lA~~L~--------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~Iv 104 (595)
+.+..|+..|-.++..-+ ...++.++..|.+ .++.+|+.++.+|+.++....+.....+ ..+++.++
T Consensus 17 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 92 (252)
T 4hxt_A 17 ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV 92 (252)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHH
Confidence 345556666666665432 2346777766654 4689999999999999976543322211 24688999
Q ss_pred hhccCCChhHHHHHHHHHHHhhhhhcC--Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH-HHH
Q 046417 105 CRLRDPDSSVRSACVAATTAMSLNITK--PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL-RKL 179 (595)
Q Consensus 105 rrLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L-~~L 179 (595)
+.|+++++.||..|+++|+.|+..-.+ .... ..+++|+..| .+.+..++..|+.||..+....+.....++ ..+
T Consensus 93 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 171 (252)
T 4hxt_A 93 KLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGG 171 (252)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcC
Confidence 999999999999999999999953211 0011 2577777777 678889999999999999875322111222 348
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Q 046417 180 LPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD 252 (595)
Q Consensus 180 l~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge 252 (595)
++.|..+|.+++..++..++.+++.++.........+. ..+++.|.+++.+++..+|..|+.+|+.|+...+.
T Consensus 172 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 172 VEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 89999999999989999999999988742211101111 34789999999999999999999999999886643
No 34
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.23 E-value=2.6e-10 Score=113.02 Aligned_cols=199 Identities=13% Similarity=0.014 Sum_probs=142.7
Q ss_pred cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC
Q 046417 52 QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK 131 (595)
Q Consensus 52 ~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~ 131 (595)
...++.++..|.+ +++.+|..++.+||.+.. +..++.+++.|+|+++.||.+++++||.+...-
T Consensus 22 ~~~i~~L~~~L~~----~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-- 85 (280)
T 1oyz_A 22 KLNDDELFRLLDD----HNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-- 85 (280)
T ss_dssp TSCHHHHHHHTTC----SSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--
T ss_pred HhhHHHHHHHHHc----CCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--
Confidence 3458888887754 578999999999988752 467888899999999999999999999987421
Q ss_pred CcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcc
Q 046417 132 PSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGA 211 (595)
Q Consensus 132 ~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~ 211 (595)
.....++..|...++.+.+..|+..|+.+|..+....+ .+.+.+++.|.++|++++..++.+++.++|.+..
T Consensus 86 ~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 86 KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 11111222233344578899999999999999875432 2445678888899999998888888777775431
Q ss_pred cCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417 212 RSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWK 288 (595)
Q Consensus 212 ~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K 288 (595)
+..+|.|.+.+.+++|.+|..|+.+|+.+.... +.++..|..+-.|.-..||..+..+|..+.
T Consensus 158 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 236788888999999999999999998873111 112223333334777889998888887653
No 35
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.22 E-value=4e-11 Score=116.17 Aligned_cols=213 Identities=11% Similarity=0.141 Sum_probs=154.0
Q ss_pred CCCChHHHHHHHHHHHHHh--------CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH-HHHH
Q 046417 31 ADRDTLPVATAELESIART--------LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS-KMIS 101 (595)
Q Consensus 31 ~DrDT~r~A~~~LD~lA~~--------L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp-kIL~ 101 (595)
+|.+.+..|+..|-.+... +....++.++..|.+ .++.+|.+++.+|+.++.+..+.....+. .+++
T Consensus 24 ~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 99 (252)
T 4db8_A 24 DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99 (252)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence 4667888899999554432 123346777777764 45899999999999999876544322222 3789
Q ss_pred HHHhhccCCChhHHHHHHHHHHHhhhhhcCC-c-ch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH-
Q 046417 102 TVSCRLRDPDSSVRSACVAATTAMSLNITKP-S-FS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL- 176 (595)
Q Consensus 102 ~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~-~-~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L- 176 (595)
.+++.|+++++.||..|+++|+.|+..-... . .. ..+++|+..| .+.+..++..|+.||..+....+......+
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 178 (252)
T 4db8_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVID 178 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 9999999999999999999999998643111 1 11 1667777777 677889999999999999875422211222
Q ss_pred HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417 177 RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAV 248 (595)
Q Consensus 177 ~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~ 248 (595)
..+++.|+.+|++++..++..++.+++.++.........++ ..+++.|.+.+.+.+..+|..|+.+|+.|+.
T Consensus 179 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 179 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 34789999999999999999999999988732211111112 2378999999999999999999999998764
No 36
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.20 E-value=4.1e-10 Score=106.97 Aligned_cols=176 Identities=18% Similarity=0.224 Sum_probs=132.3
Q ss_pred cCCCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc
Q 046417 30 LADRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL 107 (595)
Q Consensus 30 L~DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL 107 (595)
|.|.| .+..|+..|-.+ -+++.++.++..|.+ +++.+|..++.+||.+.. +..++.+++.|
T Consensus 28 L~~~~~~vR~~A~~~L~~~---~~~~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l 90 (211)
T 3ltm_A 28 LQDDSYYVRRAAAYALGKI---GDERAVEPLIKALKD----EDAWVRRAAADALGQIGD----------ERAVEPLIKAL 90 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHH---CCGGGHHHHHHHTTC----SCHHHHHHHHHHHHHHCC----------GGGHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHh---CCccHHHHHHHHHcC----CCHHHHHHHHHHHHhhCC----------HHHHHHHHHHH
Confidence 34544 444455555443 345678888887764 479999999999988752 35667888899
Q ss_pred cCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Q 046417 108 RDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAV 187 (595)
Q Consensus 108 kD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL 187 (595)
+|+++.||.+++++|+.+... ..+..|+..| .+.++.|+..|+.+|..+.+. ..++.|.++|
T Consensus 91 ~~~~~~vr~~a~~aL~~~~~~-------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l 152 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIGDE-------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGDE----------RAVEPLIKAL 152 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCCG-------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhCcH-------HHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHH
Confidence 999999999999999998652 1456666665 789999999999999887431 3456677788
Q ss_pred ccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 046417 188 RIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD 250 (595)
Q Consensus 188 ~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av 250 (595)
++++..++.+++.+++.+. -+..++.|.+++.++++.+|..|+++|+.+....
T Consensus 153 ~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 153 KDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred cCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 8889899988888888652 1567888999999999999999999999886544
No 37
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.18 E-value=1.7e-10 Score=108.99 Aligned_cols=189 Identities=11% Similarity=0.134 Sum_probs=140.7
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC--
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK-- 131 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~-- 131 (595)
.+.++..|. ++++.+|..++.+|+.++.+..+.....+ ..+++.+++.|+++++.||..++++|+.|+..-..
T Consensus 14 ~~~l~~LL~----s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 14 LPQMVQQLN----SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp HHHHHHHTT----CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hHHHHHHhc----CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 555555554 35799999999999999977655432222 25789999999999999999999999999853211
Q ss_pred Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 046417 132 PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRV 208 (595)
Q Consensus 132 ~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a 208 (595)
.... -.+++|+..| .+.++.++..|+.+|..+....++.....+. .+++.|+++|++++..++..++.+++.++..
T Consensus 90 ~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 0111 1677788777 7788999999999999998753222222332 4889999999999999999999999988854
Q ss_pred hcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417 209 GGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAV 248 (595)
Q Consensus 209 ~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~ 248 (595)
......... ...++.|.+.+.+++..+|..|+.+|..++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 222111111 3478999999999999999999999998863
No 38
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.18 E-value=7.8e-09 Score=114.68 Aligned_cols=251 Identities=15% Similarity=0.119 Sum_probs=172.4
Q ss_pred hhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc
Q 046417 28 NKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL 107 (595)
Q Consensus 28 ~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL 107 (595)
.-|.|.++.--++ +|..|+..-.++..+.+++.|.....+.+|.+|+.|+.+++.+++..++.+.. +.+++.+...|
T Consensus 93 kdL~~~n~~ir~~-AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL 169 (591)
T 2vgl_B 93 KDCEDPNPLIRAL-AVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLI 169 (591)
T ss_dssp GGSSSSSHHHHHH-HHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTT
T ss_pred HHcCCCCHHHHHH-HHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHh
Confidence 3467777543322 26677776667778887887877777889999999999999999987775432 46889999999
Q ss_pred cCCChhHHHHHHHHHHHhhhhhcCC---cch-hccHH---------------------------------HHHHH---hh
Q 046417 108 RDPDSSVRSACVAATTAMSLNITKP---SFS-VLSKP---------------------------------LIELI---LV 147 (595)
Q Consensus 108 kD~ds~VR~Ac~~aLg~LA~~l~~~---~~~-~~l~P---------------------------------Li~aL---l~ 147 (595)
.|+++.|+.+|+.+|+.++..-.+. ... ..+.. +++.| +.
T Consensus 170 ~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~ 249 (591)
T 2vgl_B 170 ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLS 249 (591)
T ss_dssp SCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSC
T ss_pred CCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHc
Confidence 9999999999999999998653211 000 01222 22222 13
Q ss_pred cCChhHHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCc----------
Q 046417 148 EQDVNSQVGGAMCLAAAIDAA---PNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSK---------- 214 (595)
Q Consensus 148 d~nk~VQ~~AA~cLaaviE~a---~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~---------- 214 (595)
+.+..|...|+.|+-.+.... ++.....+..+.+.|..++. +...+|-.++.+++.++......+.
T Consensus 250 ~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~ 328 (591)
T 2vgl_B 250 HANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKY 328 (591)
T ss_dssp SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCT
T ss_pred CCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheecc
Confidence 456667777777766665432 22223345667777776665 5667888888888888864322111
Q ss_pred --------------------CcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchH
Q 046417 215 --------------------GVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVK 274 (595)
Q Consensus 215 --------------------~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK 274 (595)
.-++.+++.|.+++.+.||..|+.++.+|+.+|......+..+.+.++.+|. |+..
T Consensus 329 ~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~----~~~~ 404 (591)
T 2vgl_B 329 NDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ----TKVN 404 (591)
T ss_dssp TSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----TCCH
T ss_pred CChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHc----ccch
Confidence 1234578888899999999999999999999998765555556666666676 6677
Q ss_pred HHHHHHHHHHHH
Q 046417 275 IVRETMNRSLEM 286 (595)
Q Consensus 275 ~VRda~~~aL~~ 286 (595)
.|+..+..+|..
T Consensus 405 ~v~~e~i~~l~~ 416 (591)
T 2vgl_B 405 YVVQEAIVVIRD 416 (591)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766655543
No 39
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.17 E-value=2.4e-09 Score=106.01 Aligned_cols=214 Identities=13% Similarity=0.054 Sum_probs=131.3
Q ss_pred cCCCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHH-hh
Q 046417 30 LADRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVS-CR 106 (595)
Q Consensus 30 L~DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Iv-rr 106 (595)
|.|.| .+..|+..|-.+. .++.++.++.++.+ +++.+|..++.+||.+.. .. ..++.+++.+. ..
T Consensus 32 L~~~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~d----~~~~vR~~A~~aL~~l~~--~~---~~~~~l~~~L~~~~ 99 (280)
T 1oyz_A 32 LDDHNSLKRISSARVLQLRG---GQDAVRLAIEFCSD----KNYIRRDIGAFILGQIKI--CK---KCEDNVFNILNNMA 99 (280)
T ss_dssp TTCSSHHHHHHHHHHHHHHC---CHHHHHHHHHHHTC----SSHHHHHHHHHHHHHSCC--CT---TTHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHccC---CchHHHHHHHHHcC----CCHHHHHHHHHHHHHhcc--cc---ccchHHHHHHHHHH
Confidence 45555 3445555555543 34457777766653 467888888888877642 11 12445666666 35
Q ss_pred ccCCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 046417 107 LRDPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGK 185 (595)
Q Consensus 107 LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~k 185 (595)
++|+++.||.+++++||.++.... ... .++..|+..| .+.++.|+..|+.+|..+... ..++.|.+
T Consensus 100 ~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~~----------~~~~~L~~ 166 (280)
T 1oyz_A 100 LNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITA-FDKSTNVRRATAFAISVINDK----------ATIPLLIN 166 (280)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC-------------CCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCCH----------HHHHHHHH
Confidence 788888888888888888875321 111 2455555555 677888888888877655431 24566667
Q ss_pred hhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 046417 186 AVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAAL 265 (595)
Q Consensus 186 lL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~L 265 (595)
+|++++..+|..++.+++.+. . .-+.+++.|.+.+.++++.+|..|+.+|+.+.. +. ..+.++..|
T Consensus 167 ~l~d~~~~vr~~a~~aL~~~~----~----~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~---~~---~~~~L~~~l 232 (280)
T 1oyz_A 167 LLKDPNGDVRNWAAFAININK----Y----DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD---KR---VLSVLCDEL 232 (280)
T ss_dssp HHTCSSHHHHHHHHHHHHHHT----C----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---GG---GHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHhhc----c----CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---Hh---hHHHHHHHh
Confidence 777777778877777776541 1 124567778888888888888888888887751 11 122333444
Q ss_pred HhccCCchHHHHHHHHHHHHHhH
Q 046417 266 ETRRFDKVKIVRETMNRSLEMWK 288 (595)
Q Consensus 266 e~crfDKVK~VRda~~~aL~~~K 288 (595)
.. . .||..+.++|..+.
T Consensus 233 ~d----~--~vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 233 KK----N--TVYDDIIEAAGELG 249 (280)
T ss_dssp TS----S--SCCHHHHHHHHHHC
T ss_pred cC----c--cHHHHHHHHHHhcC
Confidence 42 1 16666666665543
No 40
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.14 E-value=6.3e-10 Score=107.72 Aligned_cols=230 Identities=11% Similarity=0.127 Sum_probs=160.5
Q ss_pred CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC
Q 046417 53 DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK 131 (595)
Q Consensus 53 ~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~ 131 (595)
..++.|+..|.+ .++.+|..++.+|..+.....+.....+ ..+++.+++.|+++++.||..++++|+.++..-.+
T Consensus 12 ~~~~~~~~~L~s----~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 12 SELPQMTQQLNS----DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp CSHHHHHHHHHS----SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred chHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 348888888875 4578999999999655544433222111 25789999999999999999999999999963211
Q ss_pred --Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHH
Q 046417 132 --PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVV 206 (595)
Q Consensus 132 --~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA 206 (595)
.... -.+++|+..| .+.+..++..|+.+|..+..........++. .+++.|.++|++++..++..++.+++.++
T Consensus 88 ~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (252)
T ss_dssp HHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 0111 1567777777 6788999999999999998754322122333 48899999999999999999889998887
Q ss_pred HhhcccCcCc-HHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHH-HHHHHHHHhccCCchHHHHHHHHHHH
Q 046417 207 RVGGARSKGV-LDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYK-RSCLAALETRRFDKVKIVRETMNRSL 284 (595)
Q Consensus 207 ~a~g~~~~~y-l~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~-~~~I~~Le~crfDKVK~VRda~~~aL 284 (595)
.......... -..++|.|.+.+.+++..+|..|+.+|+.|+....+....+. ..+++.|...-.+.-..||..+..+|
T Consensus 167 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L 246 (252)
T 4db8_A 167 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246 (252)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred cCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4321110111 145789999999999999999999999999853322222221 23455555555566678888888877
Q ss_pred HHh
Q 046417 285 EMW 287 (595)
Q Consensus 285 ~~~ 287 (595)
.-+
T Consensus 247 ~~l 249 (252)
T 4db8_A 247 EKL 249 (252)
T ss_dssp HTT
T ss_pred HHH
Confidence 543
No 41
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.10 E-value=1.1e-09 Score=130.18 Aligned_cols=223 Identities=6% Similarity=-0.085 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCC--CCChHHHHHHHHHHHHHHHHccc--cchhhHHHHHHHHHhhccCC-
Q 046417 36 LPVATAELESIARTLTQDSFSSFLNCLQTTDS--SSKSPVRKQCVNLLTLLSRSHGD--SLSPHLSKMISTVSCRLRDP- 110 (595)
Q Consensus 36 ~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~s--s~kp~vRKaaI~lLG~lAEg~gd--~I~PhLpkIL~~IvrrLkD~- 110 (595)
+++--+.|..++.-.+.+.+..+++.|....+ ...|..+++.+-++|.+| |+.. .-.++||+||+.++.....+
T Consensus 456 y~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa-g~~~~~~E~~~Lp~vi~~Ll~L~e~~~ 534 (1073)
T 3gjx_A 456 YKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS-GAMHEEDEKRFLVTVIKDLLGLCEQKR 534 (1073)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT-TSSCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH-CcCCcccccchHHHHHHHHhccccccc
Confidence 34555566666533334458888888865433 346999999999999999 5543 34789999999999887544
Q ss_pred ----ChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcCCCch--------HHH
Q 046417 111 ----DSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAAPNPE--------VEQ 175 (595)
Q Consensus 111 ----ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a~d~~--------~~~ 175 (595)
.+.|+...||++|++.+|+... ..||+|++..|+ .+.++.||.+||.||..+++.+.... .||
T Consensus 535 ~kd~k~~vas~i~~vlgrY~~wl~~h--~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~ 612 (1073)
T 3gjx_A 535 GKDNKAIIASNIMYIVGQYPRFLRAH--WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPF 612 (1073)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHC--HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCH
T ss_pred ccchhHHHHHHHHHHHhhhHHHHHhC--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchH
Confidence 5678999999999999999632 247788777775 47789999999999999999975432 368
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhccc--CcCcHHhHHHHHHHhcc--------------CCCH-HHHHH
Q 046417 176 LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR--SKGVLDWLVPCLVEFLC--------------CDDW-ATRKA 238 (595)
Q Consensus 176 L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~--~~~yl~~lmp~L~e~L~--------------~dDW-~~Rka 238 (595)
++.|+..+......=..+....+++++|.++.+.+.. -..|+..+|+.+.+.|. +.++ ..-..
T Consensus 613 i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~ 692 (1073)
T 3gjx_A 613 IDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGS 692 (1073)
T ss_dssp HHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHH
Confidence 8998888887775444555567789999999865432 36788889998888873 1222 23455
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHH
Q 046417 239 AAEVLGKVAVFDKDLATEYKRSC 261 (595)
Q Consensus 239 AaEaLgsIA~avge~f~py~~~~ 261 (595)
.++|..+++.++|..|.+++..+
T Consensus 693 il~~n~~v~~~~g~~f~~~~~~i 715 (1073)
T 3gjx_A 693 ILKTNVRACKAVGHPFVIQLGRI 715 (1073)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHhhhHHHHhhcchhHHHHHHHH
Confidence 67889999999999888887655
No 42
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.02 E-value=9.2e-09 Score=112.24 Aligned_cols=250 Identities=11% Similarity=0.084 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHhCCc-Cc---HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh-HHHHHHHHHhhccCCC
Q 046417 37 PVATAELESIARTLTQ-DS---FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH-LSKMISTVSCRLRDPD 111 (595)
Q Consensus 37 r~A~~~LD~lA~~L~~-~~---lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph-LpkIL~~IvrrLkD~d 111 (595)
+.|+..|-.++..-.+ .. +..+++.|.....+.++.++..++.+|+.++.+..+.+.-. -..+++.++..|.+++
T Consensus 227 ~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~ 306 (529)
T 3tpo_A 227 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 306 (529)
T ss_dssp HHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCC
Confidence 4455666666654322 11 34556666665666789999999999999998776543221 1356788899999999
Q ss_pred hhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHh
Q 046417 112 SSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKA 186 (595)
Q Consensus 112 s~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~kl 186 (595)
+.|+..|+.+|+.++..-... ... ..+.+|+..| .+.+..++..||.+|..+..+..+.....+. .++|.|+.+
T Consensus 307 ~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL-~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~l 385 (529)
T 3tpo_A 307 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 385 (529)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT-TCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH-cCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHH
Confidence 999999999999998532110 011 2667777766 7788899999999999998754332222333 488999999
Q ss_pred hccCchhHHHHHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-----HhHHHHHH
Q 046417 187 VRIEGFKAKAAVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-----DLATEYKR 259 (595)
Q Consensus 187 L~~~~~kaK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-----e~f~py~~ 259 (595)
|.+..+.++..++.+|+.++..+......|+ ..+++.|.+.|.+.|..++..++++|..|..... +.+..+..
T Consensus 386 L~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~ie 465 (529)
T 3tpo_A 386 LSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE 465 (529)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHH
Confidence 9999999998888899888754422211222 2368999999999999999999999999976432 22333333
Q ss_pred H--HHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417 260 S--CLAALETRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 260 ~--~I~~Le~crfDKVK~VRda~~~aL~~~ 287 (595)
. .+..++..++.+-.-|++.+..-|+.|
T Consensus 466 e~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 466 ECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3 377788888888899999888888766
No 43
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.96 E-value=1.7e-08 Score=112.93 Aligned_cols=243 Identities=14% Similarity=0.102 Sum_probs=152.5
Q ss_pred cCCCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhc
Q 046417 30 LADRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRL 107 (595)
Q Consensus 30 L~DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrL 107 (595)
|.|.+ .+..|+..|-.++ .++.++.+++.|.....+.+|.+||.|+.+++.+...+++.+. .+++.+...|
T Consensus 116 L~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~----~~~~~l~~lL 188 (618)
T 1w63_A 116 LNHSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME----MFLPATKNLL 188 (618)
T ss_dssp HSCSSSHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG----GGGGGTTTST
T ss_pred cCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH----HHHHHHHHHh
Confidence 34444 2333445544443 4555666666666666667899999999999999999998653 5677888999
Q ss_pred cCCChhHHHHHHHHHHHhhhhhcC--CcchhccHHHHHHHhh--------------cCChhHHHHHHHHHHHHHhcCCCc
Q 046417 108 RDPDSSVRSACVAATTAMSLNITK--PSFSVLSKPLIELILV--------------EQDVNSQVGGAMCLAAAIDAAPNP 171 (595)
Q Consensus 108 kD~ds~VR~Ac~~aLg~LA~~l~~--~~~~~~l~PLi~aLl~--------------d~nk~VQ~~AA~cLaaviE~a~d~ 171 (595)
.|+|+.|+.+|+.+|+.++..-.+ ..+..+++.|+..|.. ..++-.|....-+|..++...+.
T Consensus 189 ~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~- 267 (618)
T 1w63_A 189 NEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD- 267 (618)
T ss_dssp TCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-
T ss_pred CCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-
Confidence 999999999999999999854311 0111234445554421 24788888888888877753211
Q ss_pred hHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417 172 EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK 251 (595)
Q Consensus 172 ~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg 251 (595)
..+.+..++.++.+-+....-...+.++.++..+...... ......++..|..++.+.|-.+|..|+.+|+.|+...+
T Consensus 268 ~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~--~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p 345 (618)
T 1w63_A 268 SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE--SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH 345 (618)
T ss_dssp HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH
Confidence 1122233444443322221112234455666666653221 22234567888888887777888888888888888777
Q ss_pred HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417 252 DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEM 286 (595)
Q Consensus 252 e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~ 286 (595)
+.+.+|... +..|.+|.-..||..+.+.|-.
T Consensus 346 ~~~~~~~~~----i~~~l~d~d~~Ir~~alelL~~ 376 (618)
T 1w63_A 346 NAVQRHRST----IVDCLKDLDVSIKRRAMELSFA 376 (618)
T ss_dssp HHHGGGHHH----HHHGGGSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHccCCChhHHHHHHHHHHH
Confidence 777766554 3345457777788765554433
No 44
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.94 E-value=1.3e-08 Score=110.92 Aligned_cols=250 Identities=11% Similarity=0.081 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHhCCcC-c---HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh-HHHHHHHHHhhccCCC
Q 046417 37 PVATAELESIARTLTQD-S---FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH-LSKMISTVSCRLRDPD 111 (595)
Q Consensus 37 r~A~~~LD~lA~~L~~~-~---lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph-LpkIL~~IvrrLkD~d 111 (595)
+.++..|-.++..-.+. . +..+++.|.....+.++.++..++.+|..++.+..+.+.-. -..+++.++..|++++
T Consensus 208 ~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 287 (510)
T 3ul1_B 208 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 287 (510)
T ss_dssp HHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC
Confidence 44555666665543211 1 34556666666667789999999999999998765443211 1246788899999999
Q ss_pred hhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHh
Q 046417 112 SSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKA 186 (595)
Q Consensus 112 s~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~kl 186 (595)
..|+..++.+|+.++..-... ... -.+.+|+..| .+.+..+|..||.+|..+..+..+....... .++|.|+.+
T Consensus 288 ~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL-~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~l 366 (510)
T 3ul1_B 288 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 366 (510)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHh-cCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHH
Confidence 999999999999997532110 011 1555666555 6788899999999999987654332222222 488999999
Q ss_pred hccCchhHHHHHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-----HhHHHHHH
Q 046417 187 VRIEGFKAKAAVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-----DLATEYKR 259 (595)
Q Consensus 187 L~~~~~kaK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-----e~f~py~~ 259 (595)
|.+..+.+|..+..+|+.++..+......|+ ..+++.|.++|.+.|..++..++++|..|..... +.+..+..
T Consensus 367 L~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~ie 446 (510)
T 3ul1_B 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE 446 (510)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHH
Confidence 9999999998888899888764422211222 2468999999999999999999999999976542 22333333
Q ss_pred --HHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417 260 --SCLAALETRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 260 --~~I~~Le~crfDKVK~VRda~~~aL~~~ 287 (595)
..+..++.+++.+-.-|++.+..-|+.+
T Consensus 447 e~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 447 ECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3477889999888888998877777665
No 45
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.91 E-value=8.5e-09 Score=120.26 Aligned_cols=213 Identities=9% Similarity=0.061 Sum_probs=154.8
Q ss_pred hHHHHHHHHHHHHHhC-----CcC------cHHHH-HHhhhhcCCCC---ChHHHHHHHHHHHHHHHHccccchhhHHHH
Q 046417 35 TLPVATAELESIARTL-----TQD------SFSSF-LNCLQTTDSSS---KSPVRKQCVNLLTLLSRSHGDSLSPHLSKM 99 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L-----~~~------~lp~f-L~~L~d~~ss~---kp~vRKaaI~lLG~lAEg~gd~I~PhLpkI 99 (595)
....|+-.|-.++... +.. .+..| ...+.....++ .|.+|..++..+|.+++-.. ..++..+
T Consensus 421 ~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~ 497 (960)
T 1wa5_C 421 FKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIEL 497 (960)
T ss_dssp HHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHHHHHH
Confidence 5567888888898653 111 44443 34443333333 78999999999999998642 3589999
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHhhhhhc----------CCcchhccHHHHHHHhh--cCC----h--hHHHHHHHHH
Q 046417 100 ISTVSCRLRDPDSSVRSACVAATTAMSLNIT----------KPSFSVLSKPLIELILV--EQD----V--NSQVGGAMCL 161 (595)
Q Consensus 100 L~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~----------~~~~~~~l~PLi~aLl~--d~n----k--~VQ~~AA~cL 161 (595)
++.+++.|.|+++.||.+||+|+..|++... ...+..|+.+|+..|+. +.. . .....+..||
T Consensus 498 l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al 577 (960)
T 1wa5_C 498 MPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSI 577 (960)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHH
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHH
Confidence 9999999999999999999999999997532 11122477888877753 121 1 1446788999
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHhhcc----C-chhHHHHHHHHHHHHHHhh-cccCcCcHHhHHHHHHHhccCCCHHH
Q 046417 162 AAAIDAAPNPEVEQLRKLLPRLGKAVRI----E-GFKAKAAVLGVIGSVVRVG-GARSKGVLDWLVPCLVEFLCCDDWAT 235 (595)
Q Consensus 162 aaviE~a~d~~~~~L~~Ll~rL~klL~~----~-~~kaK~alLsAIgSlA~a~-g~~~~~yl~~lmp~L~e~L~~dDW~~ 235 (595)
..+++..++...||+..|+++|...+.. + ....+..++++|++++.+. ...+.+|.+.++|.+...|..+....
T Consensus 578 ~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~ 657 (960)
T 1wa5_C 578 FRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEF 657 (960)
T ss_dssp HHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhh
Confidence 9999998777889999999998887743 2 4445567889999999873 34466788899999999887654455
Q ss_pred HHHHHHHHHHHHHHh
Q 046417 236 RKAAAEVLGKVAVFD 250 (595)
Q Consensus 236 RkaAaEaLgsIA~av 250 (595)
.-.+.+.++.++...
T Consensus 658 ~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 658 IPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 666778777776653
No 46
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.90 E-value=2.6e-08 Score=108.67 Aligned_cols=252 Identities=13% Similarity=0.096 Sum_probs=167.4
Q ss_pred CCChHHHHHHHHHHHHHhC--------CcCcHHHHHHhhhhcCC-CCChHHHHHHHHHHHHHHHHccccc-hhhHHHHHH
Q 046417 32 DRDTLPVATAELESIARTL--------TQDSFSSFLNCLQTTDS-SSKSPVRKQCVNLLTLLSRSHGDSL-SPHLSKMIS 101 (595)
Q Consensus 32 DrDT~r~A~~~LD~lA~~L--------~~~~lp~fL~~L~d~~s-s~kp~vRKaaI~lLG~lAEg~gd~I-~PhLpkIL~ 101 (595)
|.+.+..|+..|-.|+..= ....+++++.+|..... .......+.+..+|..++.+..... ......++|
T Consensus 175 ~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp 254 (529)
T 3tpo_A 175 HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 254 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHH
Confidence 3346667777787777532 23448888888865432 2234567777778888777654322 445678999
Q ss_pred HHHhhccCCChhHHHHHHHHHHHhhhhhcCC-cch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH
Q 046417 102 TVSCRLRDPDSSVRSACVAATTAMSLNITKP-SFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR 177 (595)
Q Consensus 102 ~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~-~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~ 177 (595)
.+++.|+++++.|+..+||+|+.++..-.+. ..+ ..+++|+..| .+.+..++..|+.||..++...+......+.
T Consensus 255 ~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~ 333 (529)
T 3tpo_A 255 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDEQTQKVID 333 (529)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh-cCCChhHHHHHHHHHHHHHccchHHHHHHhh
Confidence 9999999999999999999999998643110 111 2677788877 6788899999999999887543221112222
Q ss_pred -HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-Hh-
Q 046417 178 -KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK-DL- 253 (595)
Q Consensus 178 -~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg-e~- 253 (595)
..++.|..+|+++...+|..+..+|+.++..........+ ..++|.|...|.+.++.+|+.|+-+|+.++.... +.
T Consensus 334 ~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~ 413 (529)
T 3tpo_A 334 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQI 413 (529)
T ss_dssp TTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHH
Confidence 3678899999999888888888888887742211111111 3478999999999999999999999999986432 22
Q ss_pred --HHHH--HHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417 254 --ATEY--KRSCLAALETRRFDKVKIVRETMNRSLEMWK 288 (595)
Q Consensus 254 --f~py--~~~~I~~Le~crfDKVK~VRda~~~aL~~~K 288 (595)
+... .+..+..|. .+=.-|+..+.++|.-+-
T Consensus 414 ~~l~~~g~i~~L~~LL~----~~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 414 VYLVHCGIIEPLMNLLS----AKDTKIIQVILDAISNIF 448 (529)
T ss_dssp HHHHHTTCHHHHHHGGG----CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHhc----CCCHHHHHHHHHHHHHHH
Confidence 1111 233444444 223445555566665443
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.90 E-value=1.3e-08 Score=110.91 Aligned_cols=251 Identities=14% Similarity=0.166 Sum_probs=165.3
Q ss_pred CCChHHHHHHHHHHHHHh--CC-------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH-HHHH
Q 046417 32 DRDTLPVATAELESIART--LT-------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS-KMIS 101 (595)
Q Consensus 32 DrDT~r~A~~~LD~lA~~--L~-------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp-kIL~ 101 (595)
|.+.+..|+..+..|... -| ...+|+|+.+|.. ++++.++.++..+|+.||.+..+...--+. ..+|
T Consensus 70 d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~---~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp 146 (510)
T 3ul1_B 70 NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK---TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIP 146 (510)
T ss_dssp CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC---CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHH
Confidence 455677788888776432 11 2238888888864 345889999999999999876654322222 3688
Q ss_pred HHHhhccCCChhHHHHHHHHHHHhhhhhcCC-cch---hccHHHHHHHhhcCC-----hhHHHHHHHHHHHHHhcC-CCc
Q 046417 102 TVSCRLRDPDSSVRSACVAATTAMSLNITKP-SFS---VLSKPLIELILVEQD-----VNSQVGGAMCLAAAIDAA-PNP 171 (595)
Q Consensus 102 ~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~-~~~---~~l~PLi~aLl~d~n-----k~VQ~~AA~cLaaviE~a-~d~ 171 (595)
.+++.|++++..||..|+|+|+.|+.....- ..+ -.+.||+..| ...+ ..++..++.+|..++.+. +..
T Consensus 147 ~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL-~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~ 225 (510)
T 3ul1_B 147 AFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 225 (510)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHT-CSSCGGGSCHHHHHHHHHHHHHHHCCCSSCC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHH-HhccchhhhHHHHHHHHHHHHHHhhcccchh
Confidence 9999999999999999999999998643110 011 1677888877 3322 235567888888888764 333
Q ss_pred hHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCc-CcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 046417 172 EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSK-GVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD 250 (595)
Q Consensus 172 ~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~-~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av 250 (595)
....+..++|.|.++|+++...++..++.+++.++........ -.-..++|.|.++|.+.++.++..|+.+|+.|+...
T Consensus 226 ~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~ 305 (510)
T 3ul1_B 226 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305 (510)
T ss_dssp CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC
Confidence 3567788999999999999988888877888777642211100 011246899999999999999999999999997533
Q ss_pred HHhHHHH-HHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417 251 KDLATEY-KRSCLAALETRRFDKVKIVRETMNRSLEM 286 (595)
Q Consensus 251 ge~f~py-~~~~I~~Le~crfDKVK~VRda~~~aL~~ 286 (595)
.+..... ...++..|-..-.+.-..||..+..+|.-
T Consensus 306 ~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~n 342 (510)
T 3ul1_B 306 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 342 (510)
T ss_dssp HHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2111100 11122222222234445666666665543
No 48
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.88 E-value=1.5e-08 Score=95.58 Aligned_cols=189 Identities=13% Similarity=0.129 Sum_probs=132.3
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchH
Q 046417 98 KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEV 173 (595)
Q Consensus 98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~ 173 (595)
...+.+++.|+++++.||..++++|+.++..-.+. ... ..+++|+..| .+.+..++..|+.||..+....++...
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 34567888899999999999999999999532110 111 1567777777 677899999999999998854322111
Q ss_pred HHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCc-HHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417 174 EQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGV-LDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK 251 (595)
Q Consensus 174 ~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~y-l~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg 251 (595)
.++. ..++.|+.+|++++..++..++.+|+.++.......... -..++|.|.+++.+++..+|..|+.+|+.++....
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 2222 378999999999999999888889988874221110111 13478999999999999999999999999987532
Q ss_pred HhHHHH-HHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417 252 DLATEY-KRSCLAALETRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 252 e~f~py-~~~~I~~Le~crfDKVK~VRda~~~aL~~~ 287 (595)
+..... ...++..|...-.+.-..||+.+..+|..+
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 221111 123445555554567788999988888765
No 49
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.87 E-value=1e-07 Score=105.72 Aligned_cols=207 Identities=14% Similarity=0.131 Sum_probs=141.7
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh-ccHHHHH
Q 046417 65 TDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV-LSKPLIE 143 (595)
Q Consensus 65 ~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~ 143 (595)
..++++...||.+...++.+++..+|.+ .-++..+.+.|+|+++.||..|..+||.+.. +.... ++.++..
T Consensus 57 l~~s~~~~~Krl~yl~l~~~~~~~~e~~----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~----~~~~~~l~~~l~~ 128 (591)
T 2vgl_B 57 CMQTDNLELKKLVYLYLMNYAKSQPDMA----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV----DKITEYLCEPLRK 128 (591)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHSHHHH----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS----GGGHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHcccCchHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh----HHHHHHHHHHHHH
Confidence 3456789999999999999999876642 3446788899999999999999999888763 11222 4444555
Q ss_pred HHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhccc-CcCcHHhHHH
Q 046417 144 LILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR-SKGVLDWLVP 222 (595)
Q Consensus 144 aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~-~~~yl~~lmp 222 (595)
.| .+.+++|+..|+.||.++....++... . ..+++.|.++|++++..++.+++.+++.++...... ........++
T Consensus 129 ~L-~d~~~~VRk~A~~al~~i~~~~p~~~~-~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~ 205 (591)
T 2vgl_B 129 CL-KDEDPYVRKTAAVCVAKLHDINAQMVE-D-QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNIN 205 (591)
T ss_dssp HS-SCSCHHHHHHHHHHHHHHHHSSCCCHH-H-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHH
T ss_pred Hc-CCCChHHHHHHHHHHHHHHhhChhhcc-c-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHH
Confidence 55 789999999999999999986655331 1 468999999999999999998888888776533221 2333445566
Q ss_pred HHHHhccC-CCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417 223 CLVEFLCC-DDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 223 ~L~e~L~~-dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~ 287 (595)
.|...+.+ +.|. +...+++|+.++... .+....+++.+..+-.+.-..||-.+..+|-.+
T Consensus 206 ~Ll~~l~~~~~~~-q~~il~~l~~l~~~~----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 206 KLLTALNECTEWG-QIFILDCLSNYNPKD----DREAQSICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp HHHHHHHHCCHHH-HHHHHHHHHTSCCCS----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred HHHHcCCCCCchH-HHHHHHHHHHhCCCC----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 66666654 5664 555566665543211 122345556666665666666766555555443
No 50
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.84 E-value=3e-08 Score=101.96 Aligned_cols=216 Identities=13% Similarity=0.060 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHHccccchhhHHHHHHHHHh-hccCCChhHHHHHHHHHHHhhhhhcC--Ccch--hccHHHHHHHh
Q 046417 72 PVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSC-RLRDPDSSVRSACVAATTAMSLNITK--PSFS--VLSKPLIELIL 146 (595)
Q Consensus 72 ~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivr-rLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~--~~l~PLi~aLl 146 (595)
..|..++..|..+++.......=+--..+|.++. .|+++++.||..|+|+||.++..-.. .... -.++||+..|-
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 4555666666666553321110011234677888 99999999999999999999964311 1111 27889998884
Q ss_pred hcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH--HhHHHH
Q 046417 147 VEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL--DWLVPC 223 (595)
Q Consensus 147 ~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl--~~lmp~ 223 (595)
.+.+..++..|+.||..++-+-++....++. ..++.|..+|+++..+++..+..+|+.++..... ...++ ..++|.
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~-~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE-HKGTLCSMGMVQQ 213 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChH-HHHHHHHcCCHHH
Confidence 4567889999999999998653322222332 4788999999999999998888899888754221 12222 347899
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhHHh----------HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCCC
Q 046417 224 LVEFLCCDDWATRKAAAEVLGKVAVFDKDL----------ATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 224 L~e~L~~dDW~~RkaAaEaLgsIA~avge~----------f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~~ 293 (595)
|.+.|.+++..+|..|+.+|+.|+...... +..+...+++.|.. .+ --++....+..+|....+.
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~--~e---~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ--HE---EYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTT--CG---GGHHHHHHHHHHHHHHCC-
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccc--hH---HHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999998753221 22233333222221 11 1255566677777777754
No 51
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.83 E-value=1e-07 Score=110.72 Aligned_cols=227 Identities=8% Similarity=0.052 Sum_probs=155.5
Q ss_pred hHHHHHHHHHHHHHhCCc---CcHHHHHHhhhhcCC-CCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCC
Q 046417 35 TLPVATAELESIARTLTQ---DSFSSFLNCLQTTDS-SSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDP 110 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~---~~lp~fL~~L~d~~s-s~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ 110 (595)
....|+-.|-.++..+.. ..++.+++.|.+... +..+.+|..++.++|.+++-..+.- .||+.++++|++.| |
T Consensus 480 ~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~- 556 (971)
T 2x1g_F 480 KLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-N- 556 (971)
T ss_dssp HHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H-
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-C-
Confidence 566677778888877653 337778876655332 2478999999999999998876433 78999999999999 5
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hc--CChhHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHH
Q 046417 111 DSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---VE--QDVNSQVGGAMCLAAAIDAAP-NPEVEQLRKLLPRLG 184 (595)
Q Consensus 111 ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d--~nk~VQ~~AA~cLaaviE~a~-d~~~~~L~~Ll~rL~ 184 (595)
+.|+.+||.++..|++.+.. ....|+.+|+..|+ .. -+...+..+..|+..++...+ +...+|+..+++.+.
T Consensus 557 -~~v~~~A~~al~~l~~~~~~-~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~ 634 (971)
T 2x1g_F 557 -SSMSAQATLGLKELCRDCQL-QLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCF 634 (971)
T ss_dssp -SSCHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 78999999999999987631 22236777776653 23 346688888888888888754 444567776665555
Q ss_pred Hhh----ccCc--hhHH---HHHHHHHHHHHHhhcc-------------cCcCcHHhHHHHHHHhccC--CCHHHHHHHH
Q 046417 185 KAV----RIEG--FKAK---AAVLGVIGSVVRVGGA-------------RSKGVLDWLVPCLVEFLCC--DDWATRKAAA 240 (595)
Q Consensus 185 klL----~~~~--~kaK---~alLsAIgSlA~a~g~-------------~~~~yl~~lmp~L~e~L~~--dDW~~RkaAa 240 (595)
..+ +.+. -..+ ...++.|++++.+-+. .+.+|++.+||.+...+.. ++-.+...++
T Consensus 635 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~ 714 (971)
T 2x1g_F 635 EELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAAC 714 (971)
T ss_dssp HHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 444 3321 1122 2344556666553221 3457788899998888753 3568899999
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHH
Q 046417 241 EVLGKVAVFDKDLATEYKRSCLAALE 266 (595)
Q Consensus 241 EaLgsIA~avge~f~py~~~~I~~Le 266 (595)
.+++.++..+|+.|.||.+.+++.|-
T Consensus 715 ~~~~~~~~~~~~~~~p~l~~~~~~l~ 740 (971)
T 2x1g_F 715 SAMKHAITNLRSSFQPMLQDLCLFIV 740 (971)
T ss_dssp HHHHHHHHHHHC--CTHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccccHHHHHHHHH
Confidence 99999999999888999988887754
No 52
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.82 E-value=2.6e-07 Score=106.82 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=162.4
Q ss_pred hHHHHHHHHHHHHHhCCc---CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCC
Q 046417 35 TLPVATAELESIARTLTQ---DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPD 111 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~---~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~d 111 (595)
....|+-.|-.++..+.. +.++.+++.|.. ..++.+.+|..++.++|..++-..+. ..||+.+++.|+..|+|
T Consensus 465 ~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~-- 540 (963)
T 2x19_B 465 HTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADH-PVMINSVLPLVLHALGN-- 540 (963)
T ss_dssp HHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCC--
Confidence 456688888888888763 237788887665 33457899999999999999876543 26899999999999977
Q ss_pred hhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---hc--CChhHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHH
Q 046417 112 SSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---VE--QDVNSQVGGAMCLAAAIDAAP-NPEVEQLRKLLPRLGK 185 (595)
Q Consensus 112 s~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d--~nk~VQ~~AA~cLaaviE~a~-d~~~~~L~~Ll~rL~k 185 (595)
+.|+.+||.++..|++.+.+ .+..++.+++..|. .. -+...+....-|+..++...+ +...+|+..+|+.+..
T Consensus 541 ~~V~~~A~~al~~l~~~~~~-~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~ 619 (963)
T 2x19_B 541 PELSVSSVSTLKKICRECKY-DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQ 619 (963)
T ss_dssp GGGHHHHHHHHHHHHHHTGG-GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999987632 23346777766653 22 245678888888899887765 4446788888877766
Q ss_pred hhc----cC-ch---hHHHHHHHHHHHHHHhhccc----------------------CcCcHHhHHHHHHHhcc--CCCH
Q 046417 186 AVR----IE-GF---KAKAAVLGVIGSVVRVGGAR----------------------SKGVLDWLVPCLVEFLC--CDDW 233 (595)
Q Consensus 186 lL~----~~-~~---kaK~alLsAIgSlA~a~g~~----------------------~~~yl~~lmp~L~e~L~--~dDW 233 (595)
.++ .+ +- +....++++|++++.+.+.. ..++++.++|.+...+. .++-
T Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 699 (963)
T 2x19_B 620 QLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDA 699 (963)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCch
Confidence 653 22 22 22345668888888754321 23367778888777764 2455
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Q 046417 234 ATRKAAAEVLGKVAVFDKDLATEYKRSCLAA 264 (595)
Q Consensus 234 ~~RkaAaEaLgsIA~avge~f~py~~~~I~~ 264 (595)
.++..++.+++.++..+|+.|.||.+.++..
T Consensus 700 ~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~ 730 (963)
T 2x19_B 700 QVVEAVCAIFEKSVKTLLDDFAPMVPQLCEM 730 (963)
T ss_dssp HHHHHHHHHHHHHHHHSSSTTGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 8899999999999999998777887766555
No 53
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.81 E-value=1.3e-07 Score=97.24 Aligned_cols=184 Identities=17% Similarity=0.163 Sum_probs=133.5
Q ss_pred hHHHHHHHHHhhhc-----------CCCChHHHHHHHHHHHHHhCC-------cCcHHHHHH-hhhhcCCCCChHHHHHH
Q 046417 17 NDLKQRVITCLNKL-----------ADRDTLPVATAELESIARTLT-------QDSFSSFLN-CLQTTDSSSKSPVRKQC 77 (595)
Q Consensus 17 ~~lk~rvl~~L~KL-----------~DrDT~r~A~~~LD~lA~~L~-------~~~lp~fL~-~L~d~~ss~kp~vRKaa 77 (595)
.++.+.+++.|.-- ++.+....|+..|..++.+++ ...+++|+. +|. ++++.+|+.+
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~----s~~~~vr~~A 102 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE----AGAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT----CSSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc----CCCHHHHHHH
Confidence 45566667766542 111345568888887776544 233788888 664 4678999999
Q ss_pred HHHHHHHHHHcc---ccchhhHHHHHHHHHhhcc-CCChhHHHHHHHHHHHhhhhhcC--Ccch--hccHHHHHHHhhcC
Q 046417 78 VNLLTLLSRSHG---DSLSPHLSKMISTVSCRLR-DPDSSVRSACVAATTAMSLNITK--PSFS--VLSKPLIELILVEQ 149 (595)
Q Consensus 78 I~lLG~lAEg~g---d~I~PhLpkIL~~IvrrLk-D~ds~VR~Ac~~aLg~LA~~l~~--~~~~--~~l~PLi~aLl~d~ 149 (595)
+.+||.++...+ +.+..+ ..++.+++.|+ +++..||..|+|||+.|+..... +.+. -.+++|+..| .+.
T Consensus 103 a~~Lg~ia~~n~~~~~~vv~~--g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL-~~~ 179 (296)
T 1xqr_A 103 AQLIGTCSQNVAAIQEQVLGL--GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQ 179 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSS
T ss_pred HHHHHHHHhCCHHHHHHHHHC--CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH-cCC
Confidence 999999997643 333322 46777777887 56889999999999999864321 1111 2677888877 678
Q ss_pred ChhHHHHHHHHHHHHHhcCCCchHHHHH--HHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 046417 150 DVNSQVGGAMCLAAAIDAAPNPEVEQLR--KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRV 208 (595)
Q Consensus 150 nk~VQ~~AA~cLaaviE~a~d~~~~~L~--~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a 208 (595)
+..+|..||.||..++.+.++. ..++- .+++.|+.+|+++...++..++.+|+.++..
T Consensus 180 d~~v~~~A~~aLs~L~~~~~~~-~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 180 VQKLKVKSAFLLQNLLVGHPEH-KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGG-HHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhCChHH-HHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999998873332 33343 3889999999999999999999999999864
No 54
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.71 E-value=1.7e-06 Score=83.96 Aligned_cols=214 Identities=17% Similarity=0.212 Sum_probs=155.8
Q ss_pred HHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh
Q 046417 57 SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV 136 (595)
Q Consensus 57 ~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~ 136 (595)
.||..+..+..++-|-++|.++..+.++++..++.+.|.+.+++..+-+ +..--.-++...++|.+|..- | .
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k---sEaIpltqeIa~a~G~la~i~---P--e 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK---SEAIPLTQEIAKAFGQMAKEK---P--E 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHC---H--H
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh---cccCchHHHHHHHHhHHHHhC---H--H
Confidence 3555555566667799999999999999999999999999998875432 223335567778999999744 2 2
Q ss_pred ccHHHHHHHhh---cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccC
Q 046417 137 LSKPLIELILV---EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS 213 (595)
Q Consensus 137 ~l~PLi~aLl~---d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~ 213 (595)
.+.|++..|+. -.++...+..+|+|..+.-+-+ ..+..+..-|+.+|.+++..-|.+++.-|+ +.|...
T Consensus 104 ~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~----alGen~ 175 (253)
T 2db0_A 104 LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIE----AMGENS 175 (253)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHH----TCCTTT
T ss_pred HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHH----HHhccC
Confidence 56777777764 3588889999998877654332 356677788888999998888887777666 345666
Q ss_pred cCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417 214 KGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 214 ~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~ 291 (595)
..|+...+|.|...|.|.|--+|.+|.|+|+.+|..-.. +.+-.- ..|++. -|.=-.|-..+.++|..+--+-
T Consensus 176 ~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~---~kl~e~-~D~S~lv~~~V~egL~rl~l~e 248 (253)
T 2db0_A 176 FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-LRKVVI---KRLEEL-NDTSSLVNKTVKEGISRLLLLE 248 (253)
T ss_dssp HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHH---HHHHHC-CCSCHHHHHHHHHHHHHHHHC-
T ss_pred ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHH---HHHHHh-cCcHHHHHHHHHHHHHHHHHHh
Confidence 788889999999999999999999999999999985433 444333 344432 1444666666666666655443
No 55
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.66 E-value=1.4e-06 Score=97.02 Aligned_cols=246 Identities=10% Similarity=0.054 Sum_probs=168.0
Q ss_pred CCChHHHHHHHHHHHHHhC-------CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHH
Q 046417 32 DRDTLPVATAELESIARTL-------TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTV 103 (595)
Q Consensus 32 DrDT~r~A~~~LD~lA~~L-------~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~I 103 (595)
|.+.++.|+..|..|+..- ....++.|+.+|.+ +++.+|+.++.+|+.++....+...... ..+++.+
T Consensus 70 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~L 145 (644)
T 2z6h_A 70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 145 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTC----SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhC----CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHH
Confidence 4446677777777766431 22346777766653 4689999999999999987643332222 4678999
Q ss_pred HhhccCCChhHHHHHHHHHHHhhhhhcC--Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH-H-
Q 046417 104 SCRLRDPDSSVRSACVAATTAMSLNITK--PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL-R- 177 (595)
Q Consensus 104 vrrLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L-~- 177 (595)
++.|+++++.++.+++.+|..|+..-.+ .... -.+.+|+..|-......++..++.+|..+.... ....++ .
T Consensus 146 v~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~--~~~~~l~~~ 223 (644)
T 2z6h_A 146 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS--SNKPAIVEA 223 (644)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT--THHHHHHHT
T ss_pred HHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc--ccHHHHHHC
Confidence 9999999999999999999988852110 0011 157788888743444567778888888877532 222333 2
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH---HhH
Q 046417 178 KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK---DLA 254 (595)
Q Consensus 178 ~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg---e~f 254 (595)
..++.|++++++.+..++..++.+++.++..... ......++|.|...+.++++.+|..|+.+|+.|+..-. ..+
T Consensus 224 g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v 301 (644)
T 2z6h_A 224 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 301 (644)
T ss_dssp THHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3789999999988888888888888887654322 23456789999999999999999999999999976321 222
Q ss_pred HH--HHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417 255 TE--YKRSCLAALETRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 255 ~p--y~~~~I~~Le~crfDKVK~VRda~~~aL~~~ 287 (595)
.. -.+.++..|... +....||..+..+|.-+
T Consensus 302 ~~~g~v~~Lv~lL~~~--~~~~~v~~~a~~aL~nL 334 (644)
T 2z6h_A 302 CQVGGIEALVRTVLRA--GDREDITEPAICALRHL 334 (644)
T ss_dssp HHTTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcc--CCcHHHHHHHHHHHHHH
Confidence 21 135566666643 11246777777777665
No 56
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.64 E-value=1.5e-06 Score=99.70 Aligned_cols=247 Identities=10% Similarity=0.057 Sum_probs=166.3
Q ss_pred CCChHHHHHHHHHHHHHhC-------CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHH
Q 046417 32 DRDTLPVATAELESIARTL-------TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTV 103 (595)
Q Consensus 32 DrDT~r~A~~~LD~lA~~L-------~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~I 103 (595)
|.+.++.|+..|..|+..- ....++.++..|.+ .++.+|+.++.+|+.|+....+...... ..+++.+
T Consensus 206 d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~----~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~L 281 (780)
T 2z6g_A 206 DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGS----PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM 281 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHH
Confidence 4557888888888876531 12336666666653 4689999999999999988765433332 4688899
Q ss_pred HhhccCCChhHHHHHHHHHHHhhhhhcC--Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-H
Q 046417 104 SCRLRDPDSSVRSACVAATTAMSLNITK--PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-K 178 (595)
Q Consensus 104 vrrLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~ 178 (595)
++.|++++..|+..++.+|..++....+ ..+. ..+.+|+..|-.......+..++.+|..+.... ..-...+. .
T Consensus 282 v~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g 360 (780)
T 2z6g_A 282 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAG 360 (780)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhc
Confidence 9999999999999999999888742100 0001 256778887743444556777788788777532 21112222 3
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH---HhHH
Q 046417 179 LLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK---DLAT 255 (595)
Q Consensus 179 Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg---e~f~ 255 (595)
+++.|+.+|.+....++..++.+++.++..... ......++|.|.+.|.+++|.+|..|+.+|+.|+..-. ..+.
T Consensus 361 ~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~ 438 (780)
T 2z6g_A 361 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 438 (780)
T ss_dssp HHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 778999999888777777777777777653322 22347799999999999999999999999999976321 1111
Q ss_pred --HHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417 256 --EYKRSCLAALETRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 256 --py~~~~I~~Le~crfDKVK~VRda~~~aL~~~ 287 (595)
.-.+.++..|... +....||..+..+|.-+
T Consensus 439 ~~g~i~~Lv~lL~~~--~~~~~v~~~Al~aL~nL 470 (780)
T 2z6g_A 439 QVGGIEALVRTVLRA--GDREDITEPAICALRHL 470 (780)
T ss_dssp TTTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHcc--CCHHHHHHHHHHHHHHH
Confidence 1235566666642 11236777777777654
No 57
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.63 E-value=6.8e-07 Score=89.58 Aligned_cols=188 Identities=11% Similarity=0.050 Sum_probs=133.5
Q ss_pred hhhcCCCCChHHHHHHHHHHHHHHHHcc-----ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc---
Q 046417 62 LQTTDSSSKSPVRKQCVNLLTLLSRSHG-----DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS--- 133 (595)
Q Consensus 62 L~d~~ss~kp~vRKaaI~lLG~lAEg~g-----d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~--- 133 (595)
|.+...+-+|..|++++..|..+.+... +...+.+..+++.+.+.+.|++..|...++.++..|+..+....
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 3455667789999999999887776654 33333455667788889999999999999999999987654211
Q ss_pred --ch----hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417 134 --FS----VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR 207 (595)
Q Consensus 134 --~~----~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~ 207 (595)
.. .+++.|++-.+++..+.+...|..||..+++.... ...+++.+...+++.+.+++...+..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 11 14455555533667777777777888888876432 23455666778999999999999999888876
Q ss_pred hhccc---CcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhH
Q 046417 208 VGGAR---SKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLA 254 (595)
Q Consensus 208 a~g~~---~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f 254 (595)
.-|.. ..+.++.+++.|..++.+.|=.+|.+|+++++.|-..+|+.+
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS 218 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcch
Confidence 43322 134567788888889999999999999999999988888543
No 58
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.62 E-value=2.5e-07 Score=106.23 Aligned_cols=261 Identities=13% Similarity=0.058 Sum_probs=163.1
Q ss_pred HHHhhhc-CCCC--hHHHHHHHHHHHHHhCCcC-cHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HH
Q 046417 24 ITCLNKL-ADRD--TLPVATAELESIARTLTQD-SFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SK 98 (595)
Q Consensus 24 l~~L~KL-~DrD--T~r~A~~~LD~lA~~L~~~-~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pk 98 (595)
+..|.++ .+.+ ..+.|+..|-.|+...+.. .+..+++.|.....+.++.+|+.++.+|+.|+.+..+.....+ ..
T Consensus 362 l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g 441 (780)
T 2z6g_A 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 441 (780)
T ss_dssp HHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence 4445544 3333 5667788888888765422 2444555555555567899999999999999886543221111 24
Q ss_pred HHHHHHhhccCC-Ch-hHHHHHHHHHHHhhhhhcCC-----cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC
Q 046417 99 MISTVSCRLRDP-DS-SVRSACVAATTAMSLNITKP-----SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP 169 (595)
Q Consensus 99 IL~~IvrrLkD~-ds-~VR~Ac~~aLg~LA~~l~~~-----~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~ 169 (595)
.++.+++.|.++ +. .||..|+++|+.|+....+. ... ..+++|+..|.......++..||.+|..+.....
T Consensus 442 ~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~ 521 (780)
T 2z6g_A 442 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 521 (780)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH
T ss_pred CHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH
Confidence 577788888763 43 89999999999998532210 001 2577788777433345899999999999875311
Q ss_pred CchHHHHH-HHHHHHHHhhccCchh----------------------HHHHHHHHHHHHHHhhcccCcCcH--HhHHHHH
Q 046417 170 NPEVEQLR-KLLPRLGKAVRIEGFK----------------------AKAAVLGVIGSVVRVGGARSKGVL--DWLVPCL 224 (595)
Q Consensus 170 d~~~~~L~-~Ll~rL~klL~~~~~k----------------------aK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L 224 (595)
.. ..++. .+++.|+.+|.+..+. ++.+++.+++.++..... ...+ ..++|.|
T Consensus 522 ~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~--~~~l~~~~~i~~L 598 (780)
T 2z6g_A 522 NH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHN--RIVIRGLNTIPLF 598 (780)
T ss_dssp HH-HHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHH--HHHHHHTCCHHHH
T ss_pred HH-HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhh--HHHHHHCCcHHHH
Confidence 10 11222 3677777777654332 344555666665421100 0111 2368999
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHHHh--HHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417 225 VEFLCCDDWATRKAAAEVLGKVAVFD--KDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKE 289 (595)
Q Consensus 225 ~e~L~~dDW~~RkaAaEaLgsIA~av--ge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~ 289 (595)
.++|.+.+..+|..|+.+|+.++..- ...|.. ..++..|.....|+-..||..+..||..+-.
T Consensus 599 v~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~--~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 599 VQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA--EGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHH--TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999987321 111211 1245566666667788888888888876654
No 59
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.62 E-value=3.3e-06 Score=89.89 Aligned_cols=246 Identities=11% Similarity=0.071 Sum_probs=166.2
Q ss_pred CCChHHHHHHHHHHHHHhC-------CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhh-HHHHHHHH
Q 046417 32 DRDTLPVATAELESIARTL-------TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPH-LSKMISTV 103 (595)
Q Consensus 32 DrDT~r~A~~~LD~lA~~L-------~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~Ph-LpkIL~~I 103 (595)
|.+.++.|+..|-.|+..- ....++.++..|.+ +++.+|+.++.+|+.++....+...-. =...++.+
T Consensus 73 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 148 (529)
T 1jdh_A 73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS----PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 148 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHH
Confidence 4457777888887776431 12346677666653 568999999999999998754322111 14678899
Q ss_pred HhhccCCChhHHHHHHHHHHHhhhhhcC--Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH--H
Q 046417 104 SCRLRDPDSSVRSACVAATTAMSLNITK--PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL--R 177 (595)
Q Consensus 104 vrrLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L--~ 177 (595)
++.|+++++.||.+++.+|..++..-.+ .... ..+.+|+..|-.......+..++.+|..+.... .....+ .
T Consensus 149 ~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~ 226 (529)
T 1jdh_A 149 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS--SNKPAIVEA 226 (529)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST--THHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc--ccHHHHHHC
Confidence 9999999999999999999888752100 0001 257778887744455567777888888777532 122222 2
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh---HHhH
Q 046417 178 KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD---KDLA 254 (595)
Q Consensus 178 ~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av---ge~f 254 (595)
..++.|..++++.+..++..++.+++.++..... ......++|.|.+++.+++..+|..|+.+|+.++..- ...+
T Consensus 227 g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 304 (529)
T 1jdh_A 227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 304 (529)
T ss_dssp THHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh--hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4789999999888877777778888877754321 2335678999999999999999999999999997632 1222
Q ss_pred HHH--HHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417 255 TEY--KRSCLAALETRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 255 ~py--~~~~I~~Le~crfDKVK~VRda~~~aL~~~ 287 (595)
... .+.++..|.... .-..||..+..+|.-+
T Consensus 305 ~~~~~v~~L~~ll~~~~--~~~~v~~~a~~~L~nl 337 (529)
T 1jdh_A 305 CQVGGIEALVRTVLRAG--DREDITEPAICALRHL 337 (529)
T ss_dssp HHTTHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHccC--CHHHHHHHHHHHHHHH
Confidence 222 356666776431 1246777766666654
No 60
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.62 E-value=6.5e-07 Score=94.17 Aligned_cols=266 Identities=12% Similarity=0.091 Sum_probs=172.2
Q ss_pred CCChhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhc-------CCCCChHHHHHHHHHHHHHH
Q 046417 13 PPSTNDLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTT-------DSSSKSPVRKQCVNLLTLLS 85 (595)
Q Consensus 13 ~~~~~~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~-------~ss~kp~vRKaaI~lLG~lA 85 (595)
|...++.+.+.+.+|.+|+-++..|-++.+ ...+++++..|... ....++.+|+++..+|..++
T Consensus 42 ~~~~~~~~~~A~~aL~nls~d~e~R~~i~~---------~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa 112 (354)
T 3nmw_A 42 PAPVEHQICPAVCVLMKLSFDEEHRHAMNE---------LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 112 (354)
T ss_dssp CCGGGGTHHHHHHHHHHHHTSHHHHHHHHH---------TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHH---------cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 333467777888999999743444433322 23467777776321 11234678999999999998
Q ss_pred HHccccc--hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh---cCCcch--hccHHHHHHHhhcCChhHHHHHH
Q 046417 86 RSHGDSL--SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI---TKPSFS--VLSKPLIELILVEQDVNSQVGGA 158 (595)
Q Consensus 86 Eg~gd~I--~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l---~~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA 158 (595)
.+-.+.- .-...-+||.+++.|+.+++.|+..++|+|+.|+..- .+.... -.++||+..|+...+..++..|+
T Consensus 113 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~ 192 (354)
T 3nmw_A 113 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 192 (354)
T ss_dssp SSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHH
Confidence 6653211 1112456899999999999999999999999998631 111111 16899999876667788898888
Q ss_pred HHHHHHHhcCCCchHHHH--HHHHHHHHHhhccCch----hHHHHHHHHHHHHHHh--hcccCcCcH--HhHHHHHHHhc
Q 046417 159 MCLAAAIDAAPNPEVEQL--RKLLPRLGKAVRIEGF----KAKAAVLGVIGSVVRV--GGARSKGVL--DWLVPCLVEFL 228 (595)
Q Consensus 159 ~cLaaviE~a~d~~~~~L--~~Ll~rL~klL~~~~~----kaK~alLsAIgSlA~a--~g~~~~~yl--~~lmp~L~e~L 228 (595)
.||..+.-..++.-..+. ...+|.|.++|.+..- .++..+..+|..++.. +.......+ ...+|.|.+.|
T Consensus 193 ~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL 272 (354)
T 3nmw_A 193 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 272 (354)
T ss_dssp HHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHT
T ss_pred HHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHH
Confidence 888887642211112232 3478899999976542 3566666777776641 211111111 23689999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhH---HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417 229 CCDDWATRKAAAEVLGKVAVFDK---DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKE 289 (595)
Q Consensus 229 ~~dDW~~RkaAaEaLgsIA~avg---e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~ 289 (595)
.+.+..+++.|+-+|+.++.... ..+.. .-+++.|-..-.++-.-||+.+..||.-+-.
T Consensus 273 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~--~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 273 KSHSLTIVSNACGTLWNLSARNPKDQEALWD--MGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHH--TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred cCCChHHHHHHHHHHHHHhCCCHHHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999984322 22322 2345555555445667788888888876654
No 61
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.60 E-value=1.7e-06 Score=100.19 Aligned_cols=220 Identities=10% Similarity=0.046 Sum_probs=148.9
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH--HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL--SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP 132 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL--pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~ 132 (595)
+|.|+.++. ++++.+|+.++.+|+.||. ..+.. ..+ .-.+|.++..|++.++.++..++|||+.|+......
T Consensus 497 Vp~LV~LL~----s~s~~vqe~Aa~aL~NLA~-d~~~r-~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~ 570 (810)
T 3now_A 497 TTALCALAK----TESHNSQELIARVLNAVCG-LKELR-GKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE 570 (810)
T ss_dssp HHHHHHHHT----CCCHHHHHHHHHHHHHHHT-SHHHH-HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHc----CCCHHHHHHHHHHHHHHcC-CHHHH-HHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChh
Confidence 666666654 4578999999999999984 44321 111 135788899999999999999999999998653210
Q ss_pred -cc-----hhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHH
Q 046417 133 -SF-----SVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSV 205 (595)
Q Consensus 133 -~~-----~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSl 205 (595)
.+ ...++||+..|..+.+...+..|+.||..+....++.-..++. ..+++|..+|.+++..++.+++.+|+.+
T Consensus 571 ~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NL 650 (810)
T 3now_A 571 VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNL 650 (810)
T ss_dssp HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 01 1268899987732334445567899999888653221122333 3689999999999989999999999988
Q ss_pred HHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH----HhHH--HHHHHHHHHHHhccCCchHHHH
Q 046417 206 VRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK----DLAT--EYKRSCLAALETRRFDKVKIVR 277 (595)
Q Consensus 206 A~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg----e~f~--py~~~~I~~Le~crfDKVK~VR 277 (595)
+..-. ....++ ...+|.|..++.+++-.+|++|+-+|+.|+.... ..+. ...+.++.+|.+ .-.-||
T Consensus 651 a~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s----~d~~vq 725 (810)
T 3now_A 651 VMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN----PSPAVQ 725 (810)
T ss_dssp TTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC----SSHHHH
T ss_pred hCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC----CCHHHH
Confidence 75221 111222 2478999999999999999999999999987422 2232 244555556552 233445
Q ss_pred HHHHHHHH
Q 046417 278 ETMNRSLE 285 (595)
Q Consensus 278 da~~~aL~ 285 (595)
..+..+|.
T Consensus 726 ~~A~~aL~ 733 (810)
T 3now_A 726 HRGIVIIL 733 (810)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44455553
No 62
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.57 E-value=1.1e-06 Score=103.36 Aligned_cols=218 Identities=17% Similarity=0.188 Sum_probs=161.9
Q ss_pred HHHHhhhcCCCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCC-CCChHHHHHHHHHHHHHHHHccccchhhHHHH
Q 046417 23 VITCLNKLADRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDS-SSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKM 99 (595)
Q Consensus 23 vl~~L~KL~DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~s-s~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkI 99 (595)
+-.+|..++|.+ -++.|...++.++..++++.+..+|+.|.++.. +.||..+-+++.+|+.+++.+++.+.-.||.|
T Consensus 97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~ 176 (986)
T 2iw3_A 97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPEL 176 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccch
Confidence 445666778877 566677799999999999888888888777653 34899999999999999999999999999999
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhc--CCCchHHHHH
Q 046417 100 ISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDA--APNPEVEQLR 177 (595)
Q Consensus 100 L~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~--a~d~~~~~L~ 177 (595)
+|.+....-|..+.|..|+..|+..++.-+.......|++-|+++| .++++ |+. |+..+-.. ..+...|.|-
T Consensus 177 ~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~-~~p~~-~~~----~~~~l~~~tfv~~v~~~~l~ 250 (986)
T 2iw3_A 177 IPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCI-ADPTE-VPE----TVHLLGATTFVAEVTPATLS 250 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHH-HCTTH-HHH----HHHHHTTCCCCSCCCHHHHH
T ss_pred hcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHh-cChhh-hHH----HHHHhhcCeeEeeecchhHH
Confidence 9999999999999999999999999998775332224888899999 55654 332 33444333 2344467888
Q ss_pred HHHHHHHHhhccCchhHH--HHHH-HHHHHHHHhhcccCcCcHHhHHHHHHHhcc-CCCHHHHHHHHHHHHHHH
Q 046417 178 KLLPRLGKAVRIEGFKAK--AAVL-GVIGSVVRVGGARSKGVLDWLVPCLVEFLC-CDDWATRKAAAEVLGKVA 247 (595)
Q Consensus 178 ~Ll~rL~klL~~~~~kaK--~alL-sAIgSlA~a~g~~~~~yl~~lmp~L~e~L~-~dDW~~RkaAaEaLgsIA 247 (595)
-++|-|.+-|+......| .++| +-+..++.--.. -.+|++.|+|.|..... -.|=.+|..|..|+..+-
T Consensus 251 ~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~-~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 251 IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQV-IAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHH-HHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHH-HhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 888888889976644443 3332 444433321111 25888999999988764 456678888877777763
No 63
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.56 E-value=3.6e-07 Score=97.32 Aligned_cols=248 Identities=12% Similarity=0.042 Sum_probs=157.0
Q ss_pred hHHHHHHHHHHHHHhCCcC-cHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHHHhhccCC--
Q 046417 35 TLPVATAELESIARTLTQD-SFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTVSCRLRDP-- 110 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~-~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~IvrrLkD~-- 110 (595)
..+.|+..|-.++...+.. .+..+++.|.....+.++.+|+.++.+|+.++....+.....+ ...++.+++.|.++
T Consensus 243 ~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~ 322 (529)
T 1jdh_A 243 LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322 (529)
T ss_dssp HHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCC
Confidence 4566777777777765422 2334444444444567799999999999999875432221111 13567777777653
Q ss_pred ChhHHHHHHHHHHHhhhhhcCC-----cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHH
Q 046417 111 DSSVRSACVAATTAMSLNITKP-----SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPR 182 (595)
Q Consensus 111 ds~VR~Ac~~aLg~LA~~l~~~-----~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~r 182 (595)
++.||..++++|+.|+..-.+. ... ..+++|+..|..+.+..++..|+.+|..+..+.... ..+++ .+++.
T Consensus 323 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~ 401 (529)
T 1jdh_A 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPR 401 (529)
T ss_dssp CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-HHHHHcCCHHH
Confidence 3789999999999998642110 111 257777777733334589999999999887642211 22222 47788
Q ss_pred HHHhhccCchhHHH----------------------HHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHH
Q 046417 183 LGKAVRIEGFKAKA----------------------AVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKA 238 (595)
Q Consensus 183 L~klL~~~~~kaK~----------------------alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~Rka 238 (595)
|+.+|++..+.+|. .++.+++.++..... ...+ ..++|.|.+++.+.+..+|+.
T Consensus 402 L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~--~~~l~~~~~v~~l~~ll~~~~~~v~~~ 479 (529)
T 1jdh_A 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQLLYSPIENIQRV 479 (529)
T ss_dssp HHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHH--HHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchH--HHHHhccCCccHHHHHHcCCchHHHHH
Confidence 88888776655543 233333333321100 0001 235789999999999999999
Q ss_pred HHHHHHHHHHH--hHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417 239 AAEVLGKVAVF--DKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 239 AaEaLgsIA~a--vge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~ 287 (595)
|+.+|+.++.. ....+. ...+++.|+.+..|.-..||..+..+|..+
T Consensus 480 a~~~l~~l~~~~~~~~~i~--~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 480 AAGVLCELAQDKEAAEAIE--AEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHTTSHHHHHHHH--HTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHH--HcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 99999998732 111221 124567788888888899999999988753
No 64
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.55 E-value=6.4e-07 Score=99.77 Aligned_cols=248 Identities=13% Similarity=0.047 Sum_probs=157.8
Q ss_pred hHHHHHHHHHHHHHhCCc-CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH-HHHHHHHHhhccCC-C
Q 046417 35 TLPVATAELESIARTLTQ-DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL-SKMISTVSCRLRDP-D 111 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~-~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL-pkIL~~IvrrLkD~-d 111 (595)
..+.|+..|-.|+..-+. +.+..+++.|.....+.++.+|+.++.+|+.++....+...-.+ ...++.+++.|.+. +
T Consensus 240 ~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~ 319 (644)
T 2z6h_A 240 LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 319 (644)
T ss_dssp HHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCC
Confidence 566677777777765442 22334455554444556799999999999999886533211111 23677888888774 3
Q ss_pred -hhHHHHHHHHHHHhhhhhcCC----c-ch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH-HHHHH
Q 046417 112 -SSVRSACVAATTAMSLNITKP----S-FS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR-KLLPR 182 (595)
Q Consensus 112 -s~VR~Ac~~aLg~LA~~l~~~----~-~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~-~Ll~r 182 (595)
..||..|+++|+.|+....+. . .. ..+++|+..|....+..++..|+.+|..+....... ..++. .+++.
T Consensus 320 ~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~ 398 (644)
T 2z6h_A 320 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPR 398 (644)
T ss_dssp CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHH
Confidence 689999999999998532110 0 11 256777777733345689999999999887542211 12222 37788
Q ss_pred HHHhhccCchh----------------------HHHHHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHH
Q 046417 183 LGKAVRIEGFK----------------------AKAAVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKA 238 (595)
Q Consensus 183 L~klL~~~~~k----------------------aK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~Rka 238 (595)
|+.+|.+..+. ++.+++.+++.++..... ..++ ..++|.|.++|.+.+..+|+.
T Consensus 399 Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~--~~~l~~~~~i~~Lv~lL~~~~~~v~~~ 476 (644)
T 2z6h_A 399 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQLLYSPIENIQRV 476 (644)
T ss_dssp HHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHH--HHHHHHTTCHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHH--HHHHHhCCcHHHHHHHHcCCCHHHHHH
Confidence 88888664332 344455566655532211 1112 346899999999999999999
Q ss_pred HHHHHHHHHHHh--HHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417 239 AAEVLGKVAVFD--KDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 239 AaEaLgsIA~av--ge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~ 287 (595)
|+.+|+.++..- ...+.. ..++..|..+..|.-..||..+..+|..+
T Consensus 477 a~~aL~~l~~~~~~~~~i~~--~g~l~~L~~ll~~~~~~vr~~A~~aL~~l 525 (644)
T 2z6h_A 477 AAGVLCELAQDKEAAEAIEA--EGATAPLTELLHSRNEGVATYAAAVLFRM 525 (644)
T ss_dssp HHHHHHHHHTSHHHHHHHHH--TTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHH--cCChhHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999987421 112211 22456677777788888888888777654
No 65
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.55 E-value=1.5e-06 Score=94.58 Aligned_cols=259 Identities=12% Similarity=0.092 Sum_probs=164.2
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhc-------CCCCChHHHHHHHHHHHHHHHHccc
Q 046417 18 DLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTT-------DSSSKSPVRKQCVNLLTLLSRSHGD 90 (595)
Q Consensus 18 ~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~-------~ss~kp~vRKaaI~lLG~lAEg~gd 90 (595)
++.-+.+.+|.+|++.+..|-++.+ ...+++++..|... ..+.++.+++++..+|..++.+-.+
T Consensus 163 ~~~~qAv~aL~nls~~~e~R~~i~~---------~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~ 233 (458)
T 3nmz_A 163 HQICPAVCVLMKLSFDEEHRHAMNE---------LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA 233 (458)
T ss_dssp TTTHHHHHHHHHHTTSHHHHHHHHH---------TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH---------CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc
Confidence 3444555556666544433333221 23477777777421 1113467899999999999976542
Q ss_pred cchhh---HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh---cCCcch--hccHHHHHHHhhcCChhHHHHHHHHHH
Q 046417 91 SLSPH---LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI---TKPSFS--VLSKPLIELILVEQDVNSQVGGAMCLA 162 (595)
Q Consensus 91 ~I~Ph---LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l---~~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLa 162 (595)
. ... ...+||.+++.|+.+++.|+..++|+|+.|+..- .+.... -.++||+..|+...+..++..|+.||.
T Consensus 234 ~-k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~ 312 (458)
T 3nmz_A 234 N-KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALW 312 (458)
T ss_dssp H-HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred c-HHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2 112 2456899999999999999999999999998631 111111 168999998866677889998888888
Q ss_pred HHHhcCCCchHHHH--HHHHHHHHHhhccCch----hHHHHHHHHHHHHHHh--hcccCcCcH--HhHHHHHHHhccCCC
Q 046417 163 AAIDAAPNPEVEQL--RKLLPRLGKAVRIEGF----KAKAAVLGVIGSVVRV--GGARSKGVL--DWLVPCLVEFLCCDD 232 (595)
Q Consensus 163 aviE~a~d~~~~~L--~~Ll~rL~klL~~~~~----kaK~alLsAIgSlA~a--~g~~~~~yl--~~lmp~L~e~L~~dD 232 (595)
.+.-...+.-..+. ...+|.|.++|.+..- .++..+..+|..++.. +.......+ ...+|.|.+.|.+.+
T Consensus 313 nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~ 392 (458)
T 3nmz_A 313 NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS 392 (458)
T ss_dssp HHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC
T ss_pred HHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC
Confidence 87652211111232 3477888889876542 3565666777776641 221111111 236899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhH---HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417 233 WATRKAAAEVLGKVAVFDK---DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWK 288 (595)
Q Consensus 233 W~~RkaAaEaLgsIA~avg---e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K 288 (595)
..+++.|+-+|+.++.... ..+.. .-+++.|-+.-..+-.-||+.+..||.-+-
T Consensus 393 ~~v~~~A~~aL~nLa~~~~~~~~~i~~--~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 393 LTIVSNACGTLWNLSARNPKDQEALWD--MGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449 (458)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHH--HTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 9999999999999985322 22222 234555555544556677888777776553
No 66
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.52 E-value=2.3e-06 Score=99.20 Aligned_cols=263 Identities=10% Similarity=0.048 Sum_probs=183.6
Q ss_pred HHHhhhc---CCCChHHHHHHHHHHHHHhC-------CcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc-ccc
Q 046417 24 ITCLNKL---ADRDTLPVATAELESIARTL-------TQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG-DSL 92 (595)
Q Consensus 24 l~~L~KL---~DrDT~r~A~~~LD~lA~~L-------~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g-d~I 92 (595)
+..|-.| ++.+.+.-|+..|-.||..- ....+++++..|.+ ..+..|+.+..+|+.++.+.. +.+
T Consensus 497 Vp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s----~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 497 TTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE----GTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcc----CCHHHHHHHHHHHHHHhcCCChhhh
Confidence 4455555 34457778999999888641 13348888888864 346889999999999987653 333
Q ss_pred hh--hHHHHHHHHHhhccCC-ChhHHHHHHHHHHHhhhhhcC--Ccch--hccHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046417 93 SP--HLSKMISTVSCRLRDP-DSSVRSACVAATTAMSLNITK--PSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAI 165 (595)
Q Consensus 93 ~P--hLpkIL~~IvrrLkD~-ds~VR~Ac~~aLg~LA~~l~~--~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaavi 165 (595)
.+ .....+|.++..|... +...+..+++||+.|+..-.+ ...+ -.+++|+..| .+.+..+|..|+-||..++
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL-~s~~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYL-MEDHLYLTRAAAQCLCNLV 651 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH-HSCCTTHHHHHHHHHHHHT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHh
Confidence 22 2345788999998744 334466789999999964211 1111 1677788877 5678899999999999987
Q ss_pred hcCCCchHHHHH--HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHH
Q 046417 166 DAAPNPEVEQLR--KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAE 241 (595)
Q Consensus 166 E~a~d~~~~~L~--~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaE 241 (595)
-+. +....++. ..++-|+++++++...+|.++..+|+.++......-...+ ...+|.|+++|.+++..+|+.|+.
T Consensus 652 ~~~-~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 652 MSE-DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp TSH-HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred CCh-HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHH
Confidence 532 11122332 4788999999999999998888999888762211111222 358899999999999999999999
Q ss_pred HHHHHHHHhHHhHHHHH--HHHHHHHHhccCC---chHHHHHHHHHHHHHhHhcCCC
Q 046417 242 VLGKVAVFDKDLATEYK--RSCLAALETRRFD---KVKIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 242 aLgsIA~avge~f~py~--~~~I~~Le~crfD---KVK~VRda~~~aL~~~K~i~~~ 293 (595)
+|+.++.+-++. ..++ ..+++.|..+--+ |-.-|++.+.++|+.+-+..-.
T Consensus 731 aL~NL~~~s~e~-~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 731 IILNMINAGEEI-AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRII 786 (810)
T ss_dssp HHHHHHTTCHHH-HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHH-HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCc
Confidence 999998743332 2232 4567788877433 4678889999999888776544
No 67
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.50 E-value=4.6e-06 Score=93.64 Aligned_cols=231 Identities=15% Similarity=0.109 Sum_probs=148.5
Q ss_pred HHHHHHHHhCCcCcHHHHHHhhhhcC--CCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHH
Q 046417 41 AELESIARTLTQDSFSSFLNCLQTTD--SSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSAC 118 (595)
Q Consensus 41 ~~LD~lA~~L~~~~lp~fL~~L~d~~--ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac 118 (595)
-+|..|+.--.++.++.+++.|.... .+.+|.+||.|+.++.-+.+.+++.+.+ +.+++.+.+.|.|+|+.|..+|
T Consensus 130 lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a 207 (621)
T 2vgl_A 130 LALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQHLGVVTAA 207 (621)
T ss_dssp HHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCCCccHHHHH
Confidence 34555555555666777777777766 6788999999999999999998887753 4566777888999999999999
Q ss_pred HHHHHHhhhhhcCCcchhccHHHHHHH---hhcC-------------ChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 046417 119 VAATTAMSLNITKPSFSVLSKPLIELI---LVEQ-------------DVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPR 182 (595)
Q Consensus 119 ~~aLg~LA~~l~~~~~~~~l~PLi~aL---l~d~-------------nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~r 182 (595)
+.++..++..-.+ .+..+++.++..| +... ++-.|....-.|..+...........+.+++.+
T Consensus 208 ~~~l~~i~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~ 286 (621)
T 2vgl_A 208 TSLITTLAQKNPE-EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLET 286 (621)
T ss_dssp HHHHHHHHHHCHH-HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChH-HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 9999988864311 1111333333333 2221 466776555544444321111123445556666
Q ss_pred HHHhhc-cC---chhH----HHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH--H
Q 046417 183 LGKAVR-IE---GFKA----KAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK--D 252 (595)
Q Consensus 183 L~klL~-~~---~~ka----K~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg--e 252 (595)
++..+. .+ ..+- .+.+++++..+.... .+.+++..++..|..++.+.+-.+|..|+++|..|+...+ +
T Consensus 287 il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~ 364 (621)
T 2vgl_A 287 ILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHE 364 (621)
T ss_dssp HHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHH
T ss_pred HHHhhccCcccccccccchHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHH
Confidence 654432 12 1121 244558888877654 3456778899999999998888999999999999987654 4
Q ss_pred hHHHHHHHHHHHHHhccCCchHHHHHH
Q 046417 253 LATEYKRSCLAALETRRFDKVKIVRET 279 (595)
Q Consensus 253 ~f~py~~~~I~~Le~crfDKVK~VRda 279 (595)
.+.+|...++..| ++|.=..||.-
T Consensus 365 ~~~~~~~~i~~~L---~~d~d~~Ir~~ 388 (621)
T 2vgl_A 365 AVKTHIETVINAL---KTERDVSVRQR 388 (621)
T ss_dssp HHHTTHHHHHHHH---TTCCCHHHHHH
T ss_pred HHHHHHHHHHHHh---ccCCCHhHHHH
Confidence 5666665544433 32433455543
No 68
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.48 E-value=5.7e-07 Score=108.14 Aligned_cols=198 Identities=11% Similarity=0.006 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcC-------------------------CCCChHHHHHHHHHHHHHHHHccc
Q 046417 36 LPVATAELESIARTLTQDSFSSFLNCLQTTD-------------------------SSSKSPVRKQCVNLLTLLSRSHGD 90 (595)
Q Consensus 36 ~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~-------------------------ss~kp~vRKaaI~lLG~lAEg~gd 90 (595)
++.....|+.++...|...+..+++.|.+.. .++.|...++.+..++.+++++.+
T Consensus 440 Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~ 519 (1204)
T 3a6p_A 440 RAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFR 519 (1204)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677888888887666765555552221 123457788899999999999954
Q ss_pred cc-hhhHH-HHHHHHHhhc---cCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh---c------------CC
Q 046417 91 SL-SPHLS-KMISTVSCRL---RDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV---E------------QD 150 (595)
Q Consensus 91 ~I-~PhLp-kIL~~IvrrL---kD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~---d------------~n 150 (595)
.. .++++ .+++.++..| ...+|.+|..+...+|+|+.|+.+.+ .++.|+++.|+. + .+
T Consensus 520 ~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p--~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~ 597 (1204)
T 3a6p_A 520 TLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRP--EFLPQVFSKLFSSVTFETVEESKAPRTRAV 597 (1204)
T ss_dssp HSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCG--GGHHHHHHHHHHHHHCCTTCSTTSCCCHHH
T ss_pred ccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHhhccCCcccccccccHHH
Confidence 43 34444 2344444432 44688899999999999999986433 477777776652 2 35
Q ss_pred hhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCc---hhHHHHHHHHHHHHHHh-h-cccCcCcHHhHHHHHH
Q 046417 151 VNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEG---FKAKAAVLGVIGSVVRV-G-GARSKGVLDWLVPCLV 225 (595)
Q Consensus 151 k~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~---~kaK~alLsAIgSlA~a-~-g~~~~~yl~~lmp~L~ 225 (595)
+.++.+||+||..+++.+++.+.+|++.|...+..++.... .+-+..+.++++.++.. + ......|++.+|+++.
T Consensus 598 k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~ 677 (1204)
T 3a6p_A 598 RNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVA 677 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999988888999999999999887544 44566777899888643 2 2234577999999999
Q ss_pred HhccCCCHHH
Q 046417 226 EFLCCDDWAT 235 (595)
Q Consensus 226 e~L~~dDW~~ 235 (595)
+.|.+++|+.
T Consensus 678 ~~w~~~~~~~ 687 (1204)
T 3a6p_A 678 SIWLSQDMHR 687 (1204)
T ss_dssp HHHSCHHHHH
T ss_pred HHHccHHHHH
Confidence 9999988884
No 69
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.45 E-value=9.4e-06 Score=95.68 Aligned_cols=259 Identities=15% Similarity=0.228 Sum_probs=183.7
Q ss_pred cCCCChHHHHHHHHHHHHHh-CCcCcH-HHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc--ccchhhHHHHHHHHHh
Q 046417 30 LADRDTLPVATAELESIART-LTQDSF-SSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG--DSLSPHLSKMISTVSC 105 (595)
Q Consensus 30 L~DrDT~r~A~~~LD~lA~~-L~~~~l-p~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g--d~I~PhLpkIL~~Ivr 105 (595)
.++.+..+.|+..|-.+... .....+ .-++..|.....+-|.. +.++.+++.+|+..+ ..+-||+=.++|.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 102 (986)
T 2iw3_A 25 VATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICT 102 (986)
T ss_dssp TCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHH
Confidence 35667777888887776553 211111 24555555544332334 999999999997665 4678999889999999
Q ss_pred hccCCChhHHHHHHHHHHHhhhhhcCCcch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 046417 106 RLRDPDSSVRSACVAATTAMSLNITKPSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRL 183 (595)
Q Consensus 106 rLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL 183 (595)
.+-|-+..||.|+-.|+-.+...+. ++. .+++.|+.+|-..+.=....+|.-+|..+++.+++.+.-+|++|+|-+
T Consensus 103 ~~~dk~~~v~~aa~~~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~ 180 (986)
T 2iw3_A 103 NAGNKDKEIQSVASETLISIVNAVN--PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVL 180 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSC--GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcch
Confidence 9999999999999999999998874 333 388889999944444457789999999999998777778999999999
Q ss_pred HHhhccCchhHHHHHHHHHHHHHHhhc-ccCcCcHHh----------------------------------HHHHHHHhc
Q 046417 184 GKAVRIEGFKAKAAVLGVIGSVVRVGG-ARSKGVLDW----------------------------------LVPCLVEFL 228 (595)
Q Consensus 184 ~klL~~~~~kaK~alLsAIgSlA~a~g-~~~~~yl~~----------------------------------lmp~L~e~L 228 (595)
..++-+-..++|.++..++-.+....+ ....++++. ++|.|..-|
T Consensus 181 ~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l 260 (986)
T 2iw3_A 181 SETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGL 260 (986)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHH
T ss_pred HhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhh
Confidence 999988888888888877776665322 222333333 344444444
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhH--HhHHHHHHHHHHHHHhccCCch--HHHHHHHHHHHHHhHhcCCC
Q 046417 229 CCDDWATRKAAAEVLGKVAVFDK--DLATEYKRSCLAALETRRFDKV--KIVRETMNRSLEMWKEVPGV 293 (595)
Q Consensus 229 ~~dDW~~RkaAaEaLgsIA~avg--e~f~py~~~~I~~Le~crfDKV--K~VRda~~~aL~~~K~i~~~ 293 (595)
....-..+.-++-.+..|..-+- ....||.+..++-|+.- +|-+ +-||+.+.+|+..++.+.+.
T Consensus 261 ~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~-~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 261 NERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSN-FATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHH-TTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHH-hhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 44444443344445555555452 36788888888887742 3555 88999999999999999877
No 70
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.41 E-value=1.3e-05 Score=89.67 Aligned_cols=240 Identities=12% Similarity=0.068 Sum_probs=159.7
Q ss_pred CCC--hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccC
Q 046417 32 DRD--TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRD 109 (595)
Q Consensus 32 DrD--T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD 109 (595)
|.+ -++.|+.+|-.+.... |+.++.|++.|.+...+.++.++-+++.+|+.+++..++. ..++.+++|.+++.|++
T Consensus 153 ~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L~~ 230 (618)
T 1w63_A 153 TSNSYLRKKAALCAVHVIRKV-PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRILKN 230 (618)
T ss_dssp SCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHH
Confidence 445 5688999999988865 5678888999998888888999999999999998766553 33445566666665553
Q ss_pred ---------------CChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh--cC----ChhHHHHHHHHHHHHHhcC
Q 046417 110 ---------------PDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV--EQ----DVNSQVGGAMCLAAAIDAA 168 (595)
Q Consensus 110 ---------------~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~--d~----nk~VQ~~AA~cLaaviE~a 168 (595)
+++-.+-....+|+.++..- +....-+.+++..++. +. +..|.-.|+.|+.. -.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~--~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~---l~ 305 (618)
T 1w63_A 231 LIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND--DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMD---IK 305 (618)
T ss_dssp HHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC--HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHH---SC
T ss_pred HHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHh---cC
Confidence 57778888888888887532 1111122233333322 12 12344444444433 22
Q ss_pred CCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417 169 PNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAV 248 (595)
Q Consensus 169 ~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~ 248 (595)
.. .......+..|.++|.++...+|-+++.+++.++...... +....+.+..++.++|..+|+.|+|+|+.++.
T Consensus 306 ~~--~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 306 SE--SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA----VQRHRSTIVDCLKDLDVSIKRRAMELSFALVN 379 (618)
T ss_dssp CC--HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH----HGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCC
T ss_pred CC--HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH----HHHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 22 1233456778888898888889999999999999765443 33445567777889999999999999999976
Q ss_pred HhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhc
Q 046417 249 FDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEV 290 (595)
Q Consensus 249 avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i 290 (595)
.. .+......++..+... | ..+|..+..+|..+-..
T Consensus 380 ~~--nv~~iv~eL~~~l~~~--d--~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 380 GN--NIRGMMKELLYFLDSC--E--PEFKADCASGIFLAAEK 415 (618)
T ss_dssp SS--STHHHHHHHHHHHHHC--C--HHHHHHHHHHHHHHHHS
T ss_pred cc--cHHHHHHHHHHHHHhC--C--HHHHHHHHHHHHHHHHH
Confidence 32 2333445556666643 2 46777777777777654
No 71
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.35 E-value=5.8e-06 Score=92.84 Aligned_cols=178 Identities=11% Similarity=0.157 Sum_probs=133.8
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF 134 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~ 134 (595)
+..++.++ ++.+...||-+.+.+..+++.++|.+ --++..+.+-|+|+++.||..|..+||.+... ..
T Consensus 76 ~~~vvkl~----~s~~~~~Krl~YL~l~~~~~~~~e~~----~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~----e~ 143 (621)
T 2vgl_A 76 HMEAVNLL----SSNRYTEKQIGYLFISVLVNSNSELI----RLINNAIKNDLASRNPTFMGLALHCIANVGSR----EM 143 (621)
T ss_dssp HHHHHHGG----GCSCHHHHHHHHHHHHHSCCCCHHHH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCH----HH
T ss_pred HHHHHHHh----cCCCHHHHHHHHHHHHHHccCCcHHH----HHHHHHHHHhcCCCCHHHHHHHHHHhhccCCH----HH
Confidence 44444444 45678999999999999999887643 44577889999999999999999999998641 11
Q ss_pred h-hccHHHHHHHh-hcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhccc
Q 046417 135 S-VLSKPLIELIL-VEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR 212 (595)
Q Consensus 135 ~-~~l~PLi~aLl-~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~ 212 (595)
. .+++++...|. .+.+++|...|++|+.++.+-.++.. ++ +.+++++.++|++++..++.+++.++..++......
T Consensus 144 ~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~-~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~ 221 (621)
T 2vgl_A 144 AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV-PM-GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE 221 (621)
T ss_dssp HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC-CC-CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc-Cc-hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH
Confidence 1 25555555553 58899999999999999998654422 21 368888999999889899999999999888766555
Q ss_pred CcCcHHhHHHHHHHhccC--------------CCHHHHHHHHHHHHHHH
Q 046417 213 SKGVLDWLVPCLVEFLCC--------------DDWATRKAAAEVLGKVA 247 (595)
Q Consensus 213 ~~~yl~~lmp~L~e~L~~--------------dDW~~RkaAaEaLgsIA 247 (595)
+.++++.++..|..++.. +.| .+...++.|+.++
T Consensus 222 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w-~qi~il~ll~~~~ 269 (621)
T 2vgl_A 222 FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPW-LSVKLLRLLQCYP 269 (621)
T ss_dssp HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHH-HHHHHHHHGGGSS
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCch-HHHHHHHHHHHhC
Confidence 677888888878777642 345 4566667776665
No 72
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.34 E-value=3.1e-05 Score=78.85 Aligned_cols=178 Identities=16% Similarity=0.102 Sum_probs=142.0
Q ss_pred ChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc--c-----hhccHHHH
Q 046417 70 KSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS--F-----SVLSKPLI 142 (595)
Q Consensus 70 kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~--~-----~~~l~PLi 142 (595)
++..|-+++-.|-...+..++.+...+.-++..+.-++.|.++.|-..|.+.|..+...+.+.. + ..+++.|+
T Consensus 59 d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~Lv 138 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLL 138 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 6888888888887777777788888888889988889999999999999999998876664321 1 13777788
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHH-
Q 046417 143 ELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLV- 221 (595)
Q Consensus 143 ~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lm- 221 (595)
+-| ||+...|-..+-.+|..+.+-.+ ..++.+.+...+++.+.++|...++.++++...-|... ...+
T Consensus 139 eKl-Gd~k~~vR~~~r~il~~l~~v~~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~----~~~l~ 207 (266)
T 2of3_A 139 LKT-GEAKDNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP----LKSLS 207 (266)
T ss_dssp HGG-GCSSHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG----GGGGC
T ss_pred HHh-CCChHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc----ccccc
Confidence 888 88887787777777766654321 23577778889999999999999999999998766552 3456
Q ss_pred --HHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 046417 222 --PCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYK 258 (595)
Q Consensus 222 --p~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~ 258 (595)
|.+..++.|.|-.+|.+|+.||..+=..+|+.+-.|.
T Consensus 208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 208 VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999888998666564
No 73
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.29 E-value=1.2e-07 Score=84.42 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=88.1
Q ss_pred hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHH
Q 046417 95 HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVE 174 (595)
Q Consensus 95 hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~ 174 (595)
+.+.-++.++..|+|+++.||.+++++|+.+... -+.+|+..| .+.++.|+..|+.+|..+.+
T Consensus 9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGDE--------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ------------CCSSCCCSSSSCCSSTTSCSST--------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC--------
Confidence 3445567888999999999999999998876542 146677666 78899999999988876542
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 046417 175 QLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKV 246 (595)
Q Consensus 175 ~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsI 246 (595)
+..++.|.++|++++..+|..++.+++.+. -+..+|.|.+.+.++++.+|..|+.+|+.|
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 234677777888888899998888888653 145788999999999999999999998753
No 74
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.17 E-value=1.1e-05 Score=94.94 Aligned_cols=187 Identities=7% Similarity=-0.044 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhcc--CCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh--
Q 046417 72 PVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLR--DPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV-- 147 (595)
Q Consensus 72 ~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLk--D~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~-- 147 (595)
..|+++-.+|..++...++.+.+++ ++.+.+.+. .++...++|+++++|.+++.+.......++..++..|+.
T Consensus 428 ~~~~~~~~~L~~l~~~~~~~~l~~v---~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~ 504 (1049)
T 3m1i_C 428 QLYKSEREVLVYLTHLNVIDTEEIM---ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT 504 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH---HHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHH---HHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH
Confidence 4577788888888877777655544 444444444 356788999999999999766422111245556665543
Q ss_pred c------CChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccC--------
Q 046417 148 E------QDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS-------- 213 (595)
Q Consensus 148 d------~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~-------- 213 (595)
+ +.+.++..++.++..+.+.... ...+++.+++.|+..|.+++..++.++..++..++...+..+
T Consensus 505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~~-~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~ 583 (1049)
T 3m1i_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES 583 (1049)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 1 2344555677777766654211 136999999999999998889999999999999998655433
Q ss_pred cCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH--HhHHHHHHHHH
Q 046417 214 KGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK--DLATEYKRSCL 262 (595)
Q Consensus 214 ~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg--e~f~py~~~~I 262 (595)
.||++.++..|...+..-+-..+....|+++.|+.+.+ +...+|...++
T Consensus 584 ~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~ 634 (1049)
T 3m1i_C 584 EPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLM 634 (1049)
T ss_dssp SCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 39999999999988877666667889999999998876 35666655433
No 75
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.17 E-value=3.3e-07 Score=81.62 Aligned_cols=119 Identities=16% Similarity=0.129 Sum_probs=85.3
Q ss_pred HHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh
Q 046417 57 SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV 136 (595)
Q Consensus 57 ~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~ 136 (595)
..++.|.....++++.+|..++.+||.+. +. . ++.+++.|+|+++.||..++++||.+... .
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~~------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~~-------~ 73 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMG----DE------A-FEPLLESLSNEDWRIRGAAAWIIGNFQDE-------R 73 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCS----ST------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCSH-------H
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhC----ch------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCCH-------H
Confidence 33444444445567899999999987553 21 1 36788899999999999999999998742 2
Q ss_pred ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHH
Q 046417 137 LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGS 204 (595)
Q Consensus 137 ~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgS 204 (595)
.+.+|+..| .+.+..|...|+.+|..+.+ +..++.|.++|++++..++..++.+++.
T Consensus 74 a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 AVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 467788777 78899999999999988752 2456777888888888888887777653
No 76
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.12 E-value=4e-05 Score=76.66 Aligned_cols=180 Identities=14% Similarity=0.110 Sum_probs=128.7
Q ss_pred hhcCCCC--hHHHHHHHHHHHHHhCCcCc--------HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccc------c
Q 046417 28 NKLADRD--TLPVATAELESIARTLTQDS--------FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGD------S 91 (595)
Q Consensus 28 ~KL~DrD--T~r~A~~~LD~lA~~L~~~~--------lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd------~ 91 (595)
.+|.+.. .+.-|+++|..+....+.+. +..++..+.....+.+..+...++.++..+++.++. .
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 4566666 77778888887776543211 112223333334456789999999999999998753 2
Q ss_pred chhhHHHHHHHHHhh-ccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC-
Q 046417 92 LSPHLSKMISTVSCR-LRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP- 169 (595)
Q Consensus 92 I~PhLpkIL~~Ivrr-LkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~- 169 (595)
..++...++|.|+.+ |.|+.+.+|.++..++-.++.... +...++.-++.+| ...++.++.++..+|..+++.-+
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~--~~~~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT--SITQSVELVIPFF-EKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS--SSHHHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHhCC
Confidence 356678889988866 899999999999999888876542 1112334444444 67889999999999999998732
Q ss_pred -C-chHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhc
Q 046417 170 -N-PEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG 210 (595)
Q Consensus 170 -d-~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g 210 (595)
. .+.+.+..+++.+.++|++.+-.+|.+++.+++.+-...|
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 2 2346788899999999999999999999999998876444
No 77
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.07 E-value=3.2e-05 Score=81.24 Aligned_cols=211 Identities=12% Similarity=0.057 Sum_probs=138.7
Q ss_pred hHHHHHHHHHHHHHhCC--------cCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH--HHHHHHH
Q 046417 35 TLPVATAELESIARTLT--------QDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL--SKMISTV 103 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~--------~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL--pkIL~~I 103 (595)
.++.|+..|-.|+..=+ ... ||.|+..|. ++++.+++.++.+|+.|+.+..+.....+ ...||.+
T Consensus 100 ~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~----s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK----SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG----CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC----CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 35566666766654321 112 666666664 46789999999999999875221111111 1357778
Q ss_pred Hhh-ccCCChhHHHHHHHHHHHhhhhhcC--Ccch---hccHHHHHHHhhcCCh---hHHHHHHHHHHHHHhc-C-CCch
Q 046417 104 SCR-LRDPDSSVRSACVAATTAMSLNITK--PSFS---VLSKPLIELILVEQDV---NSQVGGAMCLAAAIDA-A-PNPE 172 (595)
Q Consensus 104 vrr-LkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~---~~l~PLi~aLl~d~nk---~VQ~~AA~cLaaviE~-a-~d~~ 172 (595)
++. ++..+..++..++.+|..|+.+..+ .... -.+++|+..|....+. .++..|+.||..+... + .+..
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 886 4567888999999999999874311 1111 1677788887322222 4788888888887642 1 1111
Q ss_pred HHH-HH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417 173 VEQ-LR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAV 248 (595)
Q Consensus 173 ~~~-L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~ 248 (595)
... .+ ..++.|+.+|++....++..++.+|+.++... .....++ ...+|.|.+.|.+.+-..|+.|+.+|..|+.
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 122 22 37899999999999988888888888776211 1111222 3468999999999999999999999999987
Q ss_pred Hh
Q 046417 249 FD 250 (595)
Q Consensus 249 av 250 (595)
.-
T Consensus 335 ~~ 336 (354)
T 3nmw_A 335 NR 336 (354)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 78
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.96 E-value=8.6e-05 Score=80.80 Aligned_cols=209 Identities=11% Similarity=0.047 Sum_probs=139.8
Q ss_pred hHHHHHHHHHHHHHhCC--------cCc-HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH--HHHHHHH
Q 046417 35 TLPVATAELESIARTLT--------QDS-FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL--SKMISTV 103 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~--------~~~-lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL--pkIL~~I 103 (595)
.++-|+..|-.|+..=+ ... ||.|+..|. +.++.+++.++.+|+.|+.+..+.....+ ...|+.+
T Consensus 216 l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~----s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK----SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG----CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh----CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 36678888888875422 112 555555554 46789999999999999864211111111 2457788
Q ss_pred Hhhc-cCCChhHHHHHHHHHHHhhhhhcC--Ccch---hccHHHHHHHhhcCCh---hHHHHHHHHHHHHHhc-C-CCch
Q 046417 104 SCRL-RDPDSSVRSACVAATTAMSLNITK--PSFS---VLSKPLIELILVEQDV---NSQVGGAMCLAAAIDA-A-PNPE 172 (595)
Q Consensus 104 vrrL-kD~ds~VR~Ac~~aLg~LA~~l~~--~~~~---~~l~PLi~aLl~d~nk---~VQ~~AA~cLaaviE~-a-~d~~ 172 (595)
++.| +..+..++..++.+|+.|+.+..+ .... -.+++|+..|....+. .++..|+.||..+.-. + .+..
T Consensus 292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 371 (458)
T 3nmz_A 292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371 (458)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Confidence 8864 556788999999999999874311 1111 1677788877432222 3788888888887642 1 1111
Q ss_pred HH-HHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417 173 VE-QLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAV 248 (595)
Q Consensus 173 ~~-~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~ 248 (595)
.. +.+ ..+|.|+.+|++....++..++.+|+.++..... ...++ ...+|.|.+.|.+.+...|+.|+.+|..|+.
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHH-HHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 22 222 3789999999999999998888888887631111 11222 3468999999999999999999999999875
No 79
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.96 E-value=0.00015 Score=77.84 Aligned_cols=221 Identities=11% Similarity=0.111 Sum_probs=139.4
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHhCC-------cCcHHHHHHhhhh--------cCC----CCChHHHHHHHHHHHHH
Q 046417 24 ITCLNKLADRDTLPVATAELESIARTLT-------QDSFSSFLNCLQT--------TDS----SSKSPVRKQCVNLLTLL 84 (595)
Q Consensus 24 l~~L~KL~DrDT~r~A~~~LD~lA~~L~-------~~~lp~fL~~L~d--------~~s----s~kp~vRKaaI~lLG~l 84 (595)
++.|.+=+|.+.+..|+..|-.|+.. + ...+|+++.+|.. ... ..++.+.+.++.+|..+
T Consensus 92 v~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nL 170 (457)
T 1xm9_A 92 VSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL 170 (457)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHH
Confidence 33443333455777788888888875 3 1237788888832 100 13456777999999999
Q ss_pred HHHccccchhhHH---HHHHHHHhhccC------CChhHHHHHHHHHHHhhhhhc-------------------------
Q 046417 85 SRSHGDSLSPHLS---KMISTVSCRLRD------PDSSVRSACVAATTAMSLNIT------------------------- 130 (595)
Q Consensus 85 AEg~gd~I~PhLp---kIL~~IvrrLkD------~ds~VR~Ac~~aLg~LA~~l~------------------------- 130 (595)
+.. ++. ...+- .+++.++..|++ ++..+.+.|+.+|..++..+.
T Consensus 171 s~~-~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (457)
T 1xm9_A 171 SSA-DAG-RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTG 248 (457)
T ss_dssp TTS-HHH-HHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----------
T ss_pred ccC-HHH-HHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccc
Confidence 875 332 22221 456666666653 555666677767776652110
Q ss_pred -----------------------CC-c---ch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchH----HHH-
Q 046417 131 -----------------------KP-S---FS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEV----EQL- 176 (595)
Q Consensus 131 -----------------------~~-~---~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~----~~L- 176 (595)
.. . +. ..+++|+..|....++.+++.||.||..++-+-..... ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~ 328 (457)
T 1xm9_A 249 CFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328 (457)
T ss_dssp -----------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHT
T ss_pred hhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHH
Confidence 00 0 00 15677888775566789999999999999865333111 122
Q ss_pred -HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCH------HHHHHHHHHHHHHHH
Q 046417 177 -RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDW------ATRKAAAEVLGKVAV 248 (595)
Q Consensus 177 -~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW------~~RkaAaEaLgsIA~ 248 (595)
...+|.|+++|.++...++..+..+|+.++.-.... ...-...||.|.+.|...+. .+..+++.+|+.|..
T Consensus 329 ~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~-~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~ 406 (457)
T 1xm9_A 329 KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH-RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA 406 (457)
T ss_dssp TSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGH-HHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHT
T ss_pred HcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHH-HHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHh
Confidence 246799999999999999988889999887522111 11125689999999986542 456677777777754
No 80
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.89 E-value=0.00062 Score=76.27 Aligned_cols=250 Identities=14% Similarity=0.104 Sum_probs=153.4
Q ss_pred hHHHHHHHHHHHHHhCC------cCcHHHHHHhhhhc--------------CCCCChHHHHHHHHHHHHHHHHcc---cc
Q 046417 35 TLPVATAELESIARTLT------QDSFSSFLNCLQTT--------------DSSSKSPVRKQCVNLLTLLSRSHG---DS 91 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~------~~~lp~fL~~L~d~--------------~ss~kp~vRKaaI~lLG~lAEg~g---d~ 91 (595)
.++.|+..|-.|+..=. ...|++++..|... ....++.+++.+..+|..|+.... ..
T Consensus 150 ~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~ 229 (584)
T 3l6x_A 150 LTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRK 229 (584)
T ss_dssp HHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45666767766665211 12367777765210 122356899999999999986543 22
Q ss_pred chhhHHHHHHHHHhhcc------CCChhHHHHHHHHHHHhhhhhcC----------------------Cc-ch------h
Q 046417 92 LSPHLSKMISTVSCRLR------DPDSSVRSACVAATTAMSLNITK----------------------PS-FS------V 136 (595)
Q Consensus 92 I~PhLpkIL~~IvrrLk------D~ds~VR~Ac~~aLg~LA~~l~~----------------------~~-~~------~ 136 (595)
|..+ .-+++.++..|+ +++..+.+-|+++|..|+..+.. .+ .+ .
T Consensus 230 i~~~-~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~ 308 (584)
T 3l6x_A 230 LREC-DGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPE 308 (584)
T ss_dssp HHHS-TTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHH
T ss_pred HHHc-CCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhccc
Confidence 2211 223344444443 45666788889999888855310 00 01 1
Q ss_pred ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc---hHHHH--HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcc
Q 046417 137 LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP---EVEQL--RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGA 211 (595)
Q Consensus 137 ~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~---~~~~L--~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~ 211 (595)
.+++|+..|-...++.+|+.|+.||..++-+-... ....+ ...+|.|.++|.++.-.++..+..+|+.++.-...
T Consensus 309 ~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~ 388 (584)
T 3l6x_A 309 VVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN 388 (584)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH
Confidence 35667777744568899999999999998642111 11133 35689999999999999999999999988853321
Q ss_pred cCcCcHHhHHHHHHHhccCC--------CHHHHHHHHHHHHHHHHHhHH---hHHH--HHHHHHHHHHhccCCchHHHHH
Q 046417 212 RSKGVLDWLVPCLVEFLCCD--------DWATRKAAAEVLGKVAVFDKD---LATE--YKRSCLAALETRRFDKVKIVRE 278 (595)
Q Consensus 212 ~~~~yl~~lmp~L~e~L~~d--------DW~~RkaAaEaLgsIA~avge---~f~p--y~~~~I~~Le~crfDKVK~VRd 278 (595)
. ...-...+|.|++.|.+. .-.+..+|+-+|+.|+..-.+ .+.. -.+.++.+|.+.. ++-+.++.
T Consensus 389 ~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~-~~~~v~k~ 466 (584)
T 3l6x_A 389 K-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN-RSEKEVRA 466 (584)
T ss_dssp H-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS-SCHHHHHH
T ss_pred H-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-CChHHHHH
Confidence 1 122356899999999865 356788888888887643222 2221 1345555665432 24566666
Q ss_pred HHHHHHHHh
Q 046417 279 TMNRSLEMW 287 (595)
Q Consensus 279 a~~~aL~~~ 287 (595)
+..---.+|
T Consensus 467 Aa~vL~nl~ 475 (584)
T 3l6x_A 467 AALVLQTIW 475 (584)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655444465
No 81
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.86 E-value=0.0022 Score=62.41 Aligned_cols=214 Identities=15% Similarity=0.175 Sum_probs=146.6
Q ss_pred HHHHHHhhhcCCCCh---HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcC-CCCChHHHHHHHHHHHHHHHHccccchhhH
Q 046417 21 QRVITCLNKLADRDT---LPVATAELESIARTLTQDSFSSFLNCLQTTD-SSSKSPVRKQCVNLLTLLSRSHGDSLSPHL 96 (595)
Q Consensus 21 ~rvl~~L~KL~DrDT---~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~-ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL 96 (595)
..++..|-++=|+|- ++=|+..|-.++..+ |+.+.+++.-|.-.. .+.--+.-.+..++||++|..-++.+.+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~-~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~-- 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTR-EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKS-- 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHH--
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHh-HHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHh--
Confidence 344555556667785 444555566666666 556777776665552 2333467778899999999999997665
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchh-ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHH
Q 046417 97 SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSV-LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQ 175 (595)
Q Consensus 97 pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~-~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~ 175 (595)
++|.|..-++=.|+.+|---..+|+.++.... .... .++-++..| .++| ....-+| -.|+++.++.-..|
T Consensus 108 --vVp~lfanyrigd~kikIn~~yaLeeIaranP--~l~~~v~rdi~sml-tskd-~~Dkl~a---LnFi~alGen~~~y 178 (253)
T 2db0_A 108 --MIPVLFANYRIGDEKTKINVSYALEEIAKANP--MLMASIVRDFMSML-SSKN-REDKLTA---LNFIEAMGENSFKY 178 (253)
T ss_dssp --HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHT-SCSS-HHHHHHH---HHHHHTCCTTTHHH
T ss_pred --hHHHHHHHHhcCCccceecHHHHHHHHHHhCh--HHHHHHHHHHHHHh-cCCC-hHHHHHH---HHHHHHHhccCccc
Confidence 56666667777899999888889999997652 1111 334343333 4555 2222333 36888888777789
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417 176 LRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK 251 (595)
Q Consensus 176 L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg 251 (595)
+.+.+|||..+|.+.+-.+|+.++.+++-+|.... -+..++-...+-+.|..-.+-+..-+.|+.|+...+
T Consensus 179 v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np-----klRkii~~kl~e~~D~S~lv~~~V~egL~rl~l~e~ 249 (253)
T 2db0_A 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLATLND-----KLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLEG 249 (253)
T ss_dssp HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH-----HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHC--
T ss_pred cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999988884422 244444444555567667788888999999876543
No 82
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.84 E-value=0.00031 Score=83.03 Aligned_cols=230 Identities=13% Similarity=0.017 Sum_probs=150.4
Q ss_pred hHHHHHHHHHHHHHhCCc---------CcHHHHHHhhhhc----C-CCCChHHHHHHHHHHHHHHHHccccchhhHHHHH
Q 046417 35 TLPVATAELESIARTLTQ---------DSFSSFLNCLQTT----D-SSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMI 100 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~---------~~lp~fL~~L~d~----~-ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL 100 (595)
....|+-.|-.+++.+.. +.+|.+++.|... . ..+.|.+|..++..+|-.++-.... -.||+.+|
T Consensus 459 ~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-~~~l~~~L 537 (980)
T 3ibv_A 459 LIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-SAAIPALI 537 (980)
T ss_dssp HHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-CTTHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-chhHHHHH
Confidence 355666676677776642 2234444444332 1 2456899999999998888776543 25899999
Q ss_pred HHHHh--hccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHh---h-c--C--C----------------hhHH
Q 046417 101 STVSC--RLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELIL---V-E--Q--D----------------VNSQ 154 (595)
Q Consensus 101 ~~Ivr--rLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~-d--~--n----------------k~VQ 154 (595)
++++. ++.|++..||.+|+.++.+|++.+.. ....++.+++..|. . . + + ..-|
T Consensus 538 ~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~-~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 616 (980)
T 3ibv_A 538 EYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK-QVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQ 616 (980)
T ss_dssp HHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT-TCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHH
T ss_pred HHHhccccccCCChhHHHHHHHHHHHHHHHhhH-HhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHH
Confidence 99999 99999999999999999999998743 22246777777762 1 0 1 0 1135
Q ss_pred HHHHHHHHHHHhcCCCch---HHHHHHHHHH----HHHhhccC----chhHHH-HHHHHHHHHHHhhcc---cCcC---c
Q 046417 155 VGGAMCLAAAIDAAPNPE---VEQLRKLLPR----LGKAVRIE----GFKAKA-AVLGVIGSVVRVGGA---RSKG---V 216 (595)
Q Consensus 155 ~~AA~cLaaviE~a~d~~---~~~L~~Ll~r----L~klL~~~----~~kaK~-alLsAIgSlA~a~g~---~~~~---y 216 (595)
..-.-|+..++...+.+. ..|++.|++- +.+++... .-.++. .++.+||+++..-.. ...| .
T Consensus 617 l~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~ 696 (980)
T 3ibv_A 617 LYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLAS 696 (980)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHH
Confidence 556666777777654322 3466655544 44555322 111211 345667777652111 1122 3
Q ss_pred HHhHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHH
Q 046417 217 LDWLVPCLVEFLC--CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALE 266 (595)
Q Consensus 217 l~~lmp~L~e~L~--~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le 266 (595)
|..+++.+...|. ..+..+|.++.-++..+...+|..+.||.+.++..|-
T Consensus 697 f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll 748 (980)
T 3ibv_A 697 FNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL 748 (980)
T ss_dssp HHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH
Confidence 5567777766665 5778999999999999999999989999988888744
No 83
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.78 E-value=0.0011 Score=77.77 Aligned_cols=203 Identities=17% Similarity=0.187 Sum_probs=127.9
Q ss_pred CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC
Q 046417 53 DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP 132 (595)
Q Consensus 53 ~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~ 132 (595)
+.+..+++.|.+. +...|..+..+||.+--|-++. .-+..|+.++.. |.+..||.+++.+||.+.- .++
T Consensus 472 ev~e~L~~~L~dd----~~~~~~~AalALGli~vGTgn~--~ai~~LL~~~~e---~~~e~vrR~aalgLGll~~--g~~ 540 (963)
T 4ady_A 472 EVYEALKEVLYND----SATSGEAAALGMGLCMLGTGKP--EAIHDMFTYSQE---TQHGNITRGLAVGLALINY--GRQ 540 (963)
T ss_dssp HHHHHHHHHHHTC----CHHHHHHHHHHHHHHHTTCCCH--HHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTT--TCG
T ss_pred HHHHHHHHHHhcC----CHHHHHHHHHHHhhhhcccCCH--HHHHHHHHHHhc---cCcHHHHHHHHHHHHhhhC--CCh
Confidence 3366777777642 3467788888888775555421 122344444443 4455688888888887632 111
Q ss_pred cchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhccc
Q 046417 133 SFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR 212 (595)
Q Consensus 133 ~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~ 212 (595)
..+..|++.|..+.++.+.-+|++++.-..=+.++ ...+++|+..+. ++..-.+|.+++-+||-|+ . +.
T Consensus 541 ---e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn--~~aIq~LL~~~~---~d~~d~VRraAViaLGlI~-~-g~- 609 (963)
T 4ady_A 541 ---ELADDLITKMLASDESLLRYGGAFTIALAYAGTGN--NSAVKRLLHVAV---SDSNDDVRRAAVIALGFVL-L-RD- 609 (963)
T ss_dssp ---GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC--HHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT-S-SS-
T ss_pred ---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHhc---cCCcHHHHHHHHHHHHhhc-c-CC-
Confidence 25678888887778999999988877665544444 335555555533 3444446666666666433 1 21
Q ss_pred CcCcHHhHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417 213 SKGVLDWLVPCLVEFL-CCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWK 288 (595)
Q Consensus 213 ~~~yl~~lmp~L~e~L-~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K 288 (595)
+ ..+|.+.+.| .+.||.+|..|+.+||-+...-+. ..++..|+..-.|....||..+..||...-
T Consensus 610 --~---e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 610 --Y---TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp --C---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred --H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 1 2356666655 468999999999999988533221 234456666667999999999888887653
No 84
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.74 E-value=0.0016 Score=73.06 Aligned_cols=209 Identities=15% Similarity=0.094 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHHHh------CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh-hHHHHHHHHHhhc
Q 046417 35 TLPVATAELESIART------LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP-HLSKMISTVSCRL 107 (595)
Q Consensus 35 T~r~A~~~LD~lA~~------L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P-hLpkIL~~IvrrL 107 (595)
..|-++..||.+-+. +....|+.++..|.. .++.++.++..+|..++.+..+.-.- .-...||.+++.|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s----~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL 99 (584)
T 3l6x_A 24 HERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGF----RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLL 99 (584)
T ss_dssp ----------------CCCCCCCCCCHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGG
T ss_pred cccchHHHHHHHHhcCCCCCCcccccHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHH
Confidence 456778889998774 224459999998864 45788889999999998765432111 1124678999999
Q ss_pred cCCChhHHHHHHHHHHHhhhhh-cC-Ccch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 046417 108 RDPDSSVRSACVAATTAMSLNI-TK-PSFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPR 182 (595)
Q Consensus 108 kD~ds~VR~Ac~~aLg~LA~~l-~~-~~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~r 182 (595)
+.++..|+..++++|+.|+..- .+ ...+ -.++||+..|....+..+|..|+.||..+--. ++.-..++..-+|.
T Consensus 100 ~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~ 178 (584)
T 3l6x_A 100 DHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHA 178 (584)
T ss_dssp GCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHH
Confidence 9999999999999999999631 10 1111 16889999985446778899999998887542 11112344445566
Q ss_pred HHHhhc------------------cCchhHHHHHHHHHHHHHHhhcc------cCcCcHHhHHHHHHHhcc--CCCHHHH
Q 046417 183 LGKAVR------------------IEGFKAKAAVLGVIGSVVRVGGA------RSKGVLDWLVPCLVEFLC--CDDWATR 236 (595)
Q Consensus 183 L~klL~------------------~~~~kaK~alLsAIgSlA~a~g~------~~~~yl~~lmp~L~e~L~--~dDW~~R 236 (595)
|+++|- .....++..+..+|..++..... ...+..+.||..|...+. +.+....
T Consensus 179 Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~ 258 (584)
T 3l6x_A 179 LTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV 258 (584)
T ss_dssp HHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHH
T ss_pred HHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHH
Confidence 666551 11345666667777777643211 012223444444444321 2344555
Q ss_pred HHHHHHHHHHHH
Q 046417 237 KAAAEVLGKVAV 248 (595)
Q Consensus 237 kaAaEaLgsIA~ 248 (595)
..|+-+|..++.
T Consensus 259 enav~aL~NLs~ 270 (584)
T 3l6x_A 259 ENCVCLLRNLSY 270 (584)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhc
Confidence 556666655543
No 85
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.72 E-value=0.00011 Score=87.08 Aligned_cols=169 Identities=9% Similarity=-0.015 Sum_probs=117.6
Q ss_pred HHHHHHHHHccccchhhHHHHHHHHHhhccC--CChhHHHHHHHHHHHhhhhhcCCcchh----ccHHHHHHHhh----c
Q 046417 79 NLLTLLSRSHGDSLSPHLSKMISTVSCRLRD--PDSSVRSACVAATTAMSLNITKPSFSV----LSKPLIELILV----E 148 (595)
Q Consensus 79 ~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD--~ds~VR~Ac~~aLg~LA~~l~~~~~~~----~l~PLi~aLl~----d 148 (595)
-.|..++...++.+.+ .+++.+.+.+.+ ++...|+|++|++|++++.+....+.. .++.|+..+-+ +
T Consensus 435 d~L~~l~~l~~~~~~~---~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 435 EVLVYLTHLNVIDTEE---IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHHHCHHHHHH---HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHhccCHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence 4445666666654333 445555555554 577899999999999998664221222 44444443311 1
Q ss_pred CChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccC--------cCcHHhH
Q 046417 149 QDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS--------KGVLDWL 220 (595)
Q Consensus 149 ~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~--------~~yl~~l 220 (595)
....|...+|.+|....+.... ...+|+.++..|+..+..++-.+..++..++..++...+..+ .||++.+
T Consensus 512 ~k~~v~~t~~~~lGry~~wl~~-~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~i 590 (1023)
T 4hat_C 512 NKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTI 590 (1023)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHH-CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHH
Confidence 1222444667778877776421 136899999999999977777788888999999998654322 5799999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417 221 VPCLVEFLCCDDWATRKAAAEVLGKVAVFDK 251 (595)
Q Consensus 221 mp~L~e~L~~dDW~~RkaAaEaLgsIA~avg 251 (595)
+..+......-+...+..+.|+++.|+.+++
T Consensus 591 l~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 591 IRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 9999998887788889999999999999875
No 86
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.72 E-value=6.1e-05 Score=79.57 Aligned_cols=226 Identities=16% Similarity=0.089 Sum_probs=116.3
Q ss_pred hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhH
Q 046417 35 TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSV 114 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~V 114 (595)
-.|+..-.+..++.. +++.| ...+.|..-.+++++.+|=.|++.|+-|.+. . .++.|.+.+.+.|.|.+|.|
T Consensus 84 lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~---m~~~l~~~lk~~L~d~~pyV 155 (355)
T 3tjz_B 84 LRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDS---T---MLQAIERYMKQAIVDKVPSV 155 (355)
T ss_dssp HHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---T---THHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---H---HHHHHHHHHHHHcCCCCHHH
Confidence 567777777777776 45556 6667776556788999999999998877543 2 35577888999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCcch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch-------------HHHHH--
Q 046417 115 RSACVAATTAMSLNITKPSFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE-------------VEQLR-- 177 (595)
Q Consensus 115 R~Ac~~aLg~LA~~l~~~~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~-------------~~~L~-- 177 (595)
|.+|+.+...+.... |.. .|+.-+-+++ .+.|+.||..|..+|..+.+...... .++.+
T Consensus 156 Rk~A~l~~~kL~~~~---pe~v~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~ 231 (355)
T 3tjz_B 156 SSSALVSSLHLLKCS---FDVVKRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCM 231 (355)
T ss_dssp HHHHHHHHHHHTTTC---HHHHHTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHH
T ss_pred HHHHHHHHHHHhccC---HHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHH
Confidence 999999977666543 222 2555555555 78899999777666666655321000 01111
Q ss_pred ------------------HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHH
Q 046417 178 ------------------KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAA 239 (595)
Q Consensus 178 ------------------~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaA 239 (595)
++++.|...|++.+- +.+++|+.+|...... ....+...+..|+-++.+.|-.+|.+|
T Consensus 232 llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~---aVvyEa~k~I~~l~~~-~~~~~~~a~~~L~~fLss~d~niryva 307 (355)
T 3tjz_B 232 MIRVASRQLEDEDGSRDSPLFDFIESCLRNKHE---MVVYEAASAIVNLPGC-SAKELAPAVSVLQLFCSSPKAALRYAA 307 (355)
T ss_dssp HHHHHTCC-----------------CCCCCSSH---HHHHHHHHHHTC------------CCCTHHHHHHSSSSSSHHHH
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHcCCCh---HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence 122222222333222 2334556555532221 112334456677777877777888888
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHH
Q 046417 240 AEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETM 280 (595)
Q Consensus 240 aEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~ 280 (595)
+..|..|+....+.+.. |-.-+++|-.|.-..++.-+
T Consensus 308 Lr~L~~l~~~~P~~v~~----~n~~ie~li~d~n~sI~t~A 344 (355)
T 3tjz_B 308 VRTLNKVAMKHPSAVTA----CNLDLENLVTDANRSIATLA 344 (355)
T ss_dssp HHCC-------------------------------------
T ss_pred HHHHHHHHHHCcHHHHH----HHHHHHHHccCCcHhHHHHH
Confidence 88888888876666654 33345555556555555443
No 87
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.65 E-value=0.0015 Score=76.65 Aligned_cols=218 Identities=11% Similarity=0.099 Sum_probs=136.4
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCC-cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH
Q 046417 18 DLKQRVITCLNKLADRDTLPVATAELESIARTLT-QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL 96 (595)
Q Consensus 18 ~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~-~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL 96 (595)
+.-+.+++.+..=.+.+.+|.|+-.|-.+ .+. ++.++.++..|.. +.+|.+|..++.++|....|-|+.. .+
T Consensus 507 ~ai~~LL~~~~e~~~e~vrR~aalgLGll--~~g~~e~~~~li~~L~~---~~dp~vRygaa~alglAyaGTGn~~--aI 579 (963)
T 4ady_A 507 EAIHDMFTYSQETQHGNITRGLAVGLALI--NYGRQELADDLITKMLA---SDESLLRYGGAFTIALAYAGTGNNS--AV 579 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHH--TTTCGGGGHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTSCCHH--HH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhh--hCCChHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCCHH--HH
Confidence 34455555544322334555555444433 222 4558888887775 2468888888888887777777531 12
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH
Q 046417 97 SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL 176 (595)
Q Consensus 97 pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L 176 (595)
.+|+..+ ..|++..||++++.+||-++-.- + ..+..++..|....|+.|.-+|++||..+.-+-+.
T Consensus 580 q~LL~~~---~~d~~d~VRraAViaLGlI~~g~---~--e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------ 645 (963)
T 4ady_A 580 KRLLHVA---VSDSNDDVRRAAVIALGFVLLRD---Y--TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------ 645 (963)
T ss_dssp HHHHHHH---HHCSCHHHHHHHHHHHHHHTSSS---C--SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------
T ss_pred HHHHHHh---ccCCcHHHHHHHHHHHHhhccCC---H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------
Confidence 2233322 35777889999988888765321 1 13566777776778899999999998877644332
Q ss_pred HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhHH-h
Q 046417 177 RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCC--DDWATRKAAAEVLGKVAVFDKD-L 253 (595)
Q Consensus 177 ~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~--dDW~~RkaAaEaLgsIA~avge-~ 253 (595)
.+++.-|.++++++...++.+++-++|-|..--..+..|.+..++..|..+..+ +|-..|..|+-++|-|-..=|. .
T Consensus 646 ~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~t 725 (963)
T 4ady_A 646 QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVT 725 (963)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEE
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceE
Confidence 244455556677888778877766666432111123346788888888888864 6778899998888887533332 3
Q ss_pred HHH
Q 046417 254 ATE 256 (595)
Q Consensus 254 f~p 256 (595)
+.+
T Consensus 726 is~ 728 (963)
T 4ady_A 726 IQL 728 (963)
T ss_dssp ECS
T ss_pred EEe
Confidence 444
No 88
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.59 E-value=0.00021 Score=76.66 Aligned_cols=129 Identities=13% Similarity=0.060 Sum_probs=93.6
Q ss_pred cHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc-hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC-
Q 046417 54 SFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL-SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK- 131 (595)
Q Consensus 54 ~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I-~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~- 131 (595)
.++.++.+|.. +++..+..++.+|..++....+.- .=.-...+|.+++.|+++++.++..++++|..|+..-.+
T Consensus 3 ~l~~lv~~L~s----~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 3 TIPKAVQYLSS----QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp CHHHHHHHHHS----SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred CHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 37888888864 357899999999999985443211 111235688999999999999999999999999964111
Q ss_pred Ccch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Q 046417 132 PSFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAV 187 (595)
Q Consensus 132 ~~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL 187 (595)
...+ -.+++|+..|-...+..+|.-|+.||..+.-. ++.-..++...+|.|+++|
T Consensus 79 k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRV 136 (457)
T ss_dssp HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHH
Confidence 0111 26889999983267889999999999998876 2222234457889999999
No 89
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.37 E-value=0.0095 Score=62.84 Aligned_cols=228 Identities=10% Similarity=0.107 Sum_probs=130.7
Q ss_pred HHHHHHHhhhcCCC--ChHHHH--HHHHHH-HH--HhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc
Q 046417 20 KQRVITCLNKLADR--DTLPVA--TAELES-IA--RTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL 92 (595)
Q Consensus 20 k~rvl~~L~KL~Dr--DT~r~A--~~~LD~-lA--~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I 92 (595)
|..++|-...+.+. |+.+|- +.-|-. +. ..++.-....++..+..-.++.+...||-+.+.+-.++..-.+.|
T Consensus 24 k~~v~qe~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i 103 (355)
T 3tjz_B 24 KSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI 103 (355)
T ss_dssp HHHHHHHGGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 55577776666654 777764 333222 22 234332344444444444566789999999999988888744433
Q ss_pred hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCc
Q 046417 93 SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNP 171 (595)
Q Consensus 93 ~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~ 171 (595)
-++..|.+-++|+++.||..+..+|+.+.. +... .+..++-.+| .+.+++|-..|+.|...++.-.++
T Consensus 104 -----Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~pe- 172 (355)
T 3tjz_B 104 -----IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQAIERYMKQAI-VDKVPSVSSSALVSSLHLLKCSFD- 172 (355)
T ss_dssp -----GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCHH-
T ss_pred -----HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCHH-
Confidence 346788899999999999999999999875 2222 2555555666 799999999999999999876544
Q ss_pred hHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Q 046417 172 EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK 251 (595)
Q Consensus 172 ~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg 251 (595)
.++.++..+..++.+.+..+... |++.+.+..... ...+..+++.+.+.---+.|.. ++.|-.++....
T Consensus 173 ---~v~~~~~~l~~ll~d~n~~V~~~---Al~lL~ei~~~d-~~a~~kLv~~l~~~~l~~~~~q----~~llr~l~~~~~ 241 (355)
T 3tjz_B 173 ---VVKRWVNEAQEAASSDNIMVQYH---ALGLLYHVRKND-RLAVSKMISKFTRHGLKSPFAY----CMMIRVASRQLE 241 (355)
T ss_dssp ---HHHTTHHHHHHHTTCSSHHHHHH---HHHHHHHHHTTC-HHHHHHHHHHHHSSCCSCHHHH----HHHHHHHTCC--
T ss_pred ---HHHHHHHHHHHHhcCCCccHHHH---HHHHHHHHHhhc-hHHHHHHHHHHhcCCCcChHHH----HHHHHHHHHhcc
Confidence 45667888888998888766544 444444432211 1123444554443211245653 333322222111
Q ss_pred HhHHHHHHHHHHHHHhcc
Q 046417 252 DLATEYKRSCLAALETRR 269 (595)
Q Consensus 252 e~f~py~~~~I~~Le~cr 269 (595)
+........+++.|+.+-
T Consensus 242 ~d~~~~~~~~~~~l~~~L 259 (355)
T 3tjz_B 242 DEDGSRDSPLFDFIESCL 259 (355)
T ss_dssp ---------------CCC
T ss_pred ccchhhHHHHHHHHHHHH
Confidence 111223455666677664
No 90
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.36 E-value=0.0016 Score=66.25 Aligned_cols=190 Identities=13% Similarity=0.140 Sum_probs=132.8
Q ss_pred CChhHHHHHHHHHhhh-----cCCCChHHHHHHHHHHHHHhCC--cCc----HHHHHHhhhhcCCCCChHHHHHHHHHHH
Q 046417 14 PSTNDLKQRVITCLNK-----LADRDTLPVATAELESIARTLT--QDS----FSSFLNCLQTTDSSSKSPVRKQCVNLLT 82 (595)
Q Consensus 14 ~~~~~lk~rvl~~L~K-----L~DrDT~r~A~~~LD~lA~~L~--~~~----lp~fL~~L~d~~ss~kp~vRKaaI~lLG 82 (595)
+..+.|+..+.+++.+ |-..|. +--.+.|+.|...++ ++. +..++..+.-.+-+.++.+=..++..|.
T Consensus 34 e~v~~L~~~~~~~~~~~~~~~lfs~d~-k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~ 112 (266)
T 2of3_A 34 EHISQLQTLLGNQAKVSLMSQLFHKDF-KQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCK 112 (266)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHTCSCH-HHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHhcCCCH-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3456777777766443 334453 334455555555554 223 3334565543344557778788888888
Q ss_pred HHHHHccc---cchhh-HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHH
Q 046417 83 LLSRSHGD---SLSPH-LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGA 158 (595)
Q Consensus 83 ~lAEg~gd---~I~Ph-LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA 158 (595)
.+.+...+ .+..| ...++|+++.+|-|+...||++....+-.+..-+ +...++..+++++ ..+|..+-...+
T Consensus 113 ~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~---~~~~v~~~l~~g~-ksKN~R~R~e~l 188 (266)
T 2of3_A 113 VIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---GPLKMTPMLLDAL-KSKNARQRSECL 188 (266)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHGG-GCSCHHHHHHHH
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHH-ccCCHHHHHHHH
Confidence 87766543 35555 5789999999999999999999999998887654 2223677788887 677888888888
Q ss_pred HHHHHHHhcCCCchHHHHHHHH---HHHHHhhccCchhHHHHHHHHHHHHHHhhccc
Q 046417 159 MCLAAAIDAAPNPEVEQLRKLL---PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGAR 212 (595)
Q Consensus 159 ~cLaaviE~a~d~~~~~L~~Ll---~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~ 212 (595)
.+|..+++.-+-... +.+ +.+.+++.+.+-.+|.+++.++..+-...|..
T Consensus 189 ~~l~~li~~~G~~~~----~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 189 LVIEYYITNAGISPL----KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp HHHHHHHHHHCSGGG----GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHhcCCCcc----ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 889999988544322 244 88889999999999999999998777655544
No 91
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.026 Score=65.12 Aligned_cols=232 Identities=15% Similarity=0.133 Sum_probs=145.4
Q ss_pred CCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc--ccchhhHHHHHHHHHhhccCCChh---HHHHHHHHHHH
Q 046417 50 LTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG--DSLSPHLSKMISTVSCRLRDPDSS---VRSACVAATTA 124 (595)
Q Consensus 50 L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g--d~I~PhLpkIL~~IvrrLkD~ds~---VR~Ac~~aLg~ 124 (595)
+....+|.|+.++.. .++..|+.++++|+.++.--. ..+..+ -.++.++..|...... +|..|+.||++
T Consensus 454 ~eaGvIp~Lv~Ll~S----~s~~~re~A~~aL~nLS~d~~~R~~lvqq--Gal~~LL~lL~s~~~~~~~~k~~AA~ALAr 527 (778)
T 3opb_A 454 LRTELISFLKREMHN----LSPNCKQQVVRIIYNITRSKNFIPQLAQQ--GAVKIILEYLANKQDIGEPIRILGCRALTR 527 (778)
T ss_dssp TTTTHHHHHHHHGGG----SCHHHHHHHHHHHHHHHTSGGGHHHHHHT--THHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHcC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 455668888877754 468999999999999985421 222221 3456667777665433 89999999999
Q ss_pred hhhhh-----cC-CcchhccHHHHHHHhhcCCh------------hH-HHHHHHHHHHHHhcCC---Cch-HHHHH--HH
Q 046417 125 MSLNI-----TK-PSFSVLSKPLIELILVEQDV------------NS-QVGGAMCLAAAIDAAP---NPE-VEQLR--KL 179 (595)
Q Consensus 125 LA~~l-----~~-~~~~~~l~PLi~aLl~d~nk------------~V-Q~~AA~cLaaviE~a~---d~~-~~~L~--~L 179 (595)
+.-.. .. ......++||+..|..+.+. .. +--|+.||..+..... +.. ..++. ..
T Consensus 528 Llis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga 607 (778)
T 3opb_A 528 MLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY 607 (778)
T ss_dssp HHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH
T ss_pred HHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH
Confidence 88322 10 01013678999888311111 12 4578888888876532 122 23554 48
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHHHHHhhc---ccCc-CcHHh---HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH-
Q 046417 180 LPRLGKAVRIEGFKAKAAVLGVIGSVVRVGG---ARSK-GVLDW---LVPCLVEFLCCDDWATRKAAAEVLGKVAVFDK- 251 (595)
Q Consensus 180 l~rL~klL~~~~~kaK~alLsAIgSlA~a~g---~~~~-~yl~~---lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avg- 251 (595)
++.|..+|.+++..+|.++..+|..++.... ..|. ..-+. -++.|+.++..+|..+|.+|+-+|+.++....
T Consensus 608 ~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ 687 (778)
T 3opb_A 608 WSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL 687 (778)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH
Confidence 8999999999998999999999999986332 1221 11112 28899999999999999999999998865332
Q ss_pred ---HhHH--HHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417 252 ---DLAT--EYKRSCLAALETRRFDKVKIVRETMNRSLEMWK 288 (595)
Q Consensus 252 ---e~f~--py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K 288 (595)
..+. .....++.+|+.- .|....+..++.--..++.
T Consensus 688 ia~~ll~~~~gi~~Ll~lL~~~-~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 688 IAKELLTKKELIENAIQVFADQ-IDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHccccHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Confidence 1221 1334556666642 2444444444433333333
No 92
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.27 E-value=0.0017 Score=72.14 Aligned_cols=203 Identities=13% Similarity=0.080 Sum_probs=133.9
Q ss_pred HHHHHH--HHHhhhcCCC--C-----hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc
Q 046417 18 DLKQRV--ITCLNKLADR--D-----TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH 88 (595)
Q Consensus 18 ~lk~rv--l~~L~KL~Dr--D-----T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~ 88 (595)
++--|+ +-+|+|++|= | -+..|++.|-.+ .++|++ +..+...+ .....+.|.+|-.+++.|-.+
T Consensus 218 DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL---- 290 (800)
T 3oc3_A 218 KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-NDIIEQLV-GFLDSGDWQVQFSGLIALGYL---- 290 (800)
T ss_dssp THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-CCHHHHHT-TGGGCSCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-HHHHHHHH-hhcCCCCeeehhhhHHHHHHH----
Confidence 444444 4567777652 2 466788888888 899877 43333333 334556799999999999998
Q ss_pred cccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCc-chhccHHHHHHHhhcCChhHHHHHHHH-HHHHHh
Q 046417 89 GDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPS-FSVLSKPLIELILVEQDVNSQVGGAMC-LAAAID 166 (595)
Q Consensus 89 gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~-~~~~l~PLi~aLl~d~nk~VQ~~AA~c-LaaviE 166 (595)
.|.+.. |+.+++.++.+|+|+|-.||.+|+.+|.-++ .+. ...++.-|.+.|..-.+-.+-.++.+- |++++.
T Consensus 291 ~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA----~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s 365 (800)
T 3oc3_A 291 KEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP----ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYR 365 (800)
T ss_dssp GGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC----CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc----chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHc
Confidence 555544 9999999999999999999999999998888 222 123666677777432232233333332 566655
Q ss_pred cCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHH-HHhccCCCHHHHHHHHHHHH
Q 046417 167 AAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCL-VEFLCCDDWATRKAAAEVLG 244 (595)
Q Consensus 167 ~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L-~e~L~~dDW~~RkaAaEaLg 244 (595)
.-.... ..+.++|||...|++.-..+|.+++.++.++. ...++..+ +..|-..+-..|..+.++.-
T Consensus 366 ~p~~a~--~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 366 ENPELS--IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HCTTCC--CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCcccc--cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 421111 11289999999999999999999988876544 22333433 33344556566666666663
No 93
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.25 E-value=0.0033 Score=62.56 Aligned_cols=167 Identities=12% Similarity=0.069 Sum_probs=111.1
Q ss_pred HHHHHhhccCCCh--hHHHHHHHHHHHhhhhhcCC-cch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchH
Q 046417 100 ISTVSCRLRDPDS--SVRSACVAATTAMSLNITKP-SFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEV 173 (595)
Q Consensus 100 L~~IvrrLkD~ds--~VR~Ac~~aLg~LA~~l~~~-~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~ 173 (595)
+|.+++.|+.+++ .|+..+++++..++..-.+. ..+ -.++||+..| ...++.+|..|+.||..+.-..++--.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL-~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL-KVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5688889998888 88888888998888532110 111 1578888888 678899999999999998743211111
Q ss_pred HHHH-HHHHHHHHhhc-cCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc----------------CCCHHH
Q 046417 174 EQLR-KLLPRLGKAVR-IEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC----------------CDDWAT 235 (595)
Q Consensus 174 ~~L~-~Ll~rL~klL~-~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~----------------~dDW~~ 235 (595)
.+.. --+|.|+++|. .....++..+..++..++..... ........+|.|.+.+. ..+-.+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~-k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG-HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh-HHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 2222 36788999997 46788888888888888743221 12334556788877542 125588
Q ss_pred HHHHHHHHHHHHHHh---HHhHHHH---HHHHHHHHHhc
Q 046417 236 RKAAAEVLGKVAVFD---KDLATEY---KRSCLAALETR 268 (595)
Q Consensus 236 RkaAaEaLgsIA~av---ge~f~py---~~~~I~~Le~c 268 (595)
+..|+.||..++.+. +..+..+ .+..+.++..|
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~ 206 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGT 206 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhh
Confidence 999999999997632 2334322 35566666665
No 94
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.19 E-value=0.00015 Score=72.79 Aligned_cols=157 Identities=22% Similarity=0.202 Sum_probs=87.8
Q ss_pred hhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHH
Q 046417 62 LQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPL 141 (595)
Q Consensus 62 L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PL 141 (595)
|.....++++.+|..+...|+ + +.+...++|+++.||.+++..+ .. ++
T Consensus 79 l~~L~~D~~~~VR~~aA~~L~-----------~------~~L~~ll~D~d~~VR~~aA~~l---~~------------~~ 126 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRLP-----------R------EQLSALMFDEDREVRITVADRL---PL------------EQ 126 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTSC-----------S------GGGGGTTTCSCHHHHHHHHHHS---CT------------GG
T ss_pred HHHHccCcCHHHHHHHHHHCC-----------H------HHHHHHHcCCCHHHHHHHHHhC---CH------------HH
Confidence 334345677899988886532 1 3567778899999998887642 11 11
Q ss_pred HHHHhhcCChhHHHHHHHHHHH-HHhc-CCCchHHHHH-----HHH-HHHHHhhccCchhHHHHHHHHHHHHHHhhcccC
Q 046417 142 IELILVEQDVNSQVGGAMCLAA-AIDA-APNPEVEQLR-----KLL-PRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS 213 (595)
Q Consensus 142 i~aLl~d~nk~VQ~~AA~cLaa-viE~-a~d~~~~~L~-----~Ll-~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~ 213 (595)
+..|+++.+..|..+++..+.. .+.. +.+.. +.+. .+. +-|..+++++...++.+++..+
T Consensus 127 L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~d-~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l----------- 194 (244)
T 1lrv_A 127 LEQMAADRDYLVRAYVVQRIPPGRLFRFMRDED-RQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL----------- 194 (244)
T ss_dssp GGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSC-HHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC-----------
T ss_pred HHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhC-----------
Confidence 2233356666666666653210 0000 01100 0110 000 1122355666666665544321
Q ss_pred cCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 046417 214 KGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEM 286 (595)
Q Consensus 214 ~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~ 286 (595)
-.+.|..++.|++|++|.++++.|+ ...|... -|....||.++.++|.+
T Consensus 195 ------~~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L~~ 243 (244)
T 1lrv_A 195 ------RGDDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRLGI 243 (244)
T ss_dssp ------CGGGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC--
T ss_pred ------CHHHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHhCC
Confidence 0245666788999999999999876 1234445 69999999999887643
No 95
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0091 Score=68.82 Aligned_cols=173 Identities=16% Similarity=0.136 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHHhCC----------cCcHHHHHHhhhhcCCCC---------Ch-HHHHHHHHHHHHHHHHcc---cc
Q 046417 35 TLPVATAELESIARTLT----------QDSFSSFLNCLQTTDSSS---------KS-PVRKQCVNLLTLLSRSHG---DS 91 (595)
Q Consensus 35 T~r~A~~~LD~lA~~L~----------~~~lp~fL~~L~d~~ss~---------kp-~vRKaaI~lLG~lAEg~g---d~ 91 (595)
.+..|+.+|-.|+-.-+ .+.+++++..|......+ -+ ..+.+++++|+.+|..-. +.
T Consensus 517 ~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~ 596 (778)
T 3opb_A 517 IRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEE 596 (778)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchH
Confidence 35578888888774322 244899999987311111 12 458899999999998762 33
Q ss_pred chhh-HH--HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC--Ccch----h----ccHHHHHHHhhcCChhHHHHHH
Q 046417 92 LSPH-LS--KMISTVSCRLRDPDSSVRSACVAATTAMSLNITK--PSFS----V----LSKPLIELILVEQDVNSQVGGA 158 (595)
Q Consensus 92 I~Ph-Lp--kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~----~----~l~PLi~aLl~d~nk~VQ~~AA 158 (595)
+... +. ..++.|...|.+.+..||.|+++++..|+..-.. +.+. . -+++|+..+ ...|..+|.+|+
T Consensus 597 ~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll-~s~D~~~r~AAa 675 (778)
T 3opb_A 597 VCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL-QLSDVESQRAVA 675 (778)
T ss_dssp HHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGG-GCSCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHH-cCCCHHHHHHHH
Confidence 3222 22 4789999999999999999999999999963310 0110 0 256677666 778899999999
Q ss_pred HHHHHHHhcCCCchHHHH--HHHHHHHHHhhcc--CchhHHHHHHHHHHHHHHh
Q 046417 159 MCLAAAIDAAPNPEVEQL--RKLLPRLGKAVRI--EGFKAKAAVLGVIGSVVRV 208 (595)
Q Consensus 159 ~cLaaviE~a~d~~~~~L--~~Ll~rL~klL~~--~~~kaK~alLsAIgSlA~a 208 (595)
.||+.+....+.....++ ...+..++.+|.. +.-.++.-++-++..++..
T Consensus 676 gALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 676 AIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 999998543211111222 2466677777766 6666666667788888863
No 96
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.12 E-value=0.011 Score=58.70 Aligned_cols=171 Identities=12% Similarity=0.083 Sum_probs=106.3
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchh-hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC-
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSP-HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP- 132 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~P-hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~- 132 (595)
++.++..|... +++..++..+...+..++.+..+.-.- .-...||.+++.|+.+++.|+..++|+|..|+..-.+.
T Consensus 10 i~~lV~lL~s~--~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 10 LERAVSMLEAD--HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp HHHHHHTCCSS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCC--CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 88888887642 223378888888999998776432211 11245799999999999999999999999998632111
Q ss_pred cch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHhhc-----c-----------Cch
Q 046417 133 SFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVR-----I-----------EGF 192 (595)
Q Consensus 133 ~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~-----~-----------~~~ 192 (595)
..+ -.++||+..|-...+..+|..|+.+|-.+--. +.. ..+...-+|.|..++- + ...
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~--~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--GGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC--hhhHHHHHhccHHHHHHHHhccccCCcccccccccccchH
Confidence 111 17889999984356788999999888777432 111 1233344555555442 1 133
Q ss_pred hHHHHHHHHHHHHHHhhcc------cCcCcHHhHHHHHHHhcc
Q 046417 193 KAKAAVLGVIGSVVRVGGA------RSKGVLDWLVPCLVEFLC 229 (595)
Q Consensus 193 kaK~alLsAIgSlA~a~g~------~~~~yl~~lmp~L~e~L~ 229 (595)
.++..+..++..++.+... ...+.++.|+..|.....
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~ 208 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIA 208 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhh
Confidence 5666667777777653311 112334555555555443
No 97
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.10 E-value=0.013 Score=58.79 Aligned_cols=182 Identities=12% Similarity=0.092 Sum_probs=137.0
Q ss_pred cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccc-hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc
Q 046417 52 QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSL-SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT 130 (595)
Q Consensus 52 ~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I-~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~ 130 (595)
.+.+..++..|.+ .++.++-.++.+++.+-...++.+ ...+.++++.|++.+++.|-.|--=+..+|+.+-...
T Consensus 32 e~~l~~L~~LL~d----kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v- 106 (265)
T 3b2a_A 32 KRALFLILELAGE----DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV- 106 (265)
T ss_dssp HHHHHHHHHHTTS----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC-
T ss_pred hhHHHHHHHHHhc----cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-
Confidence 3346666766654 468999999999999999987666 6689999999999999999888666777777777654
Q ss_pred CCcch-hccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHH
Q 046417 131 KPSFS-VLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVV 206 (595)
Q Consensus 131 ~~~~~-~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA 206 (595)
|.. .-+.-++.+|. ..++...+.-||-.|..+ . +....+++...+..++.+.+.++|.+.+.++-.++
T Consensus 107 --pL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--k----v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 107 --PMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--Q----PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp --CBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--C----BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred --CCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--C----cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 222 12233444442 477877787777766665 1 12234577788888889999999999999998877
Q ss_pred HhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 046417 207 RVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAV 248 (595)
Q Consensus 207 ~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~ 248 (595)
.-.+. ...++.++.-+.++|.++|=.++.-|+++|-.|+.
T Consensus 179 ~~S~D--~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 179 NSSAD--SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp GGCSS--CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred cccCC--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 64443 35677788889999999999999999999988876
No 98
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.01 E-value=0.00087 Score=75.93 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=94.4
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch---hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHH
Q 046417 98 KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVE 174 (595)
Q Consensus 98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~ 174 (595)
+|+|.| +.|+.+++.+|..+|+||+.|+..-...... ..+.+++..|+.|.+..|+..|+.||..++...++....
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 456644 5689999999999999999998532111111 267788888778999999999999999987665433322
Q ss_pred HH-H-HHHHHHHHhhcc-------C-------c-------hhHHHHHHHHHHHHHHhhcccCcCcH-HhHHHHHHHhccC
Q 046417 175 QL-R-KLLPRLGKAVRI-------E-------G-------FKAKAAVLGVIGSVVRVGGARSKGVL-DWLVPCLVEFLCC 230 (595)
Q Consensus 175 ~L-~-~Ll~rL~klL~~-------~-------~-------~kaK~alLsAIgSlA~a~g~~~~~yl-~~lmp~L~e~L~~ 230 (595)
++ . .+++.|..+|+. . . +..-..++.++..++........... ...+|.|..+|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 21 1 144444444321 0 0 11223456677777764433221111 2456666666642
Q ss_pred ---CCHHHHHHHHHHHHHHHHH
Q 046417 231 ---DDWATRKAAAEVLGKVAVF 249 (595)
Q Consensus 231 ---dDW~~RkaAaEaLgsIA~a 249 (595)
....++.+|++||+.+..-
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTT
T ss_pred cCCCcHHHHHHHHHHHHHHhcc
Confidence 2468999999999998763
No 99
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.90 E-value=0.0057 Score=68.08 Aligned_cols=231 Identities=14% Similarity=0.115 Sum_probs=146.7
Q ss_pred hhcCCCC--hHHHHHHHHHHHHHhCC----------cCcHH-----HHHHhhhhcCCCCC-hHHHHHHHHHHHHHHHHcc
Q 046417 28 NKLADRD--TLPVATAELESIARTLT----------QDSFS-----SFLNCLQTTDSSSK-SPVRKQCVNLLTLLSRSHG 89 (595)
Q Consensus 28 ~KL~DrD--T~r~A~~~LD~lA~~L~----------~~~lp-----~fL~~L~d~~ss~k-p~vRKaaI~lLG~lAEg~g 89 (595)
..|-|.. +++-|+-.|..+.+.-+ .+..- ..|..+.|+.++.- .++|+.|.-+||.+ .|.
T Consensus 181 ~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL--~hL 258 (800)
T 3oc3_A 181 DNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI--YPL 258 (800)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH--TTT
T ss_pred HHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH--HhC
Confidence 3444443 77888888888776653 12222 23344455544332 59999999999998 553
Q ss_pred -ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcC
Q 046417 90 -DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAA 168 (595)
Q Consensus 90 -d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a 168 (595)
+. -+++-.+++.+..+...||....-+|--+.+.+ .. +..+++.++.+| .|.+--|+..||.+|.-+. .
T Consensus 259 p~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL-~~-Ld~Vv~aVL~GL-~D~DDDVRAVAAetLiPIA--~ 328 (800)
T 3oc3_A 259 IGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFV-ED-KDGLCRKLVSLL-SSPDEDIKLLSAELLCHFP--I 328 (800)
T ss_dssp SCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGC-CC-HHHHHHHHHHHT-TCSSHHHHHHHHHHHTTSC--C
T ss_pred Chh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHH-HH-HHHHHHHHHhhc-CCcccHHHHHHHHHhhhhc--c
Confidence 33 356666667888889999999988887663322 22 223555566666 6888889988888776665 2
Q ss_pred CCchHHHHHHHHHHHHHhhcc--CchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 046417 169 PNPEVEQLRKLLPRLGKAVRI--EGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKV 246 (595)
Q Consensus 169 ~d~~~~~L~~Ll~rL~klL~~--~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsI 246 (595)
+ ..++.|+..+-.+|.+ +-.-....+++.++.+..-...+.. .+.++|.|-.|+.+.--.+|++++.+|.++
T Consensus 329 p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~--dp~LVPRL~PFLRHtITSVR~AVL~TL~tf 402 (800)
T 3oc3_A 329 T----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI--PPERLKDIFPCFTSPVPEVRTSILNMVKNL 402 (800)
T ss_dssp S----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC--CSGGGGGTGGGGTCSSHHHHHHHHHHTTTC
T ss_pred h----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc--ChHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Confidence 2 2455555555555542 2222345677888887764432211 138999999999999999999999999887
Q ss_pred HHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhH
Q 046417 247 AVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWK 288 (595)
Q Consensus 247 A~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K 288 (595)
. .++.+.- ++++.-++.-.-||+. ++++|+
T Consensus 403 L--~~~~LRL-------IFQNILLE~neeIl~l---S~~VWk 432 (800)
T 3oc3_A 403 S--EESIDFL-------VAEVVLIEEKDEIREM---AIKLLK 432 (800)
T ss_dssp C--CHHHHHH-------HHHHHHHCSCHHHHHH---HHHHHH
T ss_pred H--hhhHHHH-------HHHHHHhCCcHHHHHH---HHHHHH
Confidence 6 3333331 2333333444455544 677786
No 100
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.57 E-value=0.011 Score=70.48 Aligned_cols=154 Identities=8% Similarity=-0.026 Sum_probs=106.0
Q ss_pred HHHHHHHhhccC--CChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh--c--C---Chh-HHHHHHHHHHHHHhc
Q 046417 98 KMISTVSCRLRD--PDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILV--E--Q---DVN-SQVGGAMCLAAAIDA 167 (595)
Q Consensus 98 kIL~~IvrrLkD--~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~--d--~---nk~-VQ~~AA~cLaaviE~ 167 (595)
.|++.+.+.+.. ++...++|+||++|++|..+..+.+..+++.++..|++ + . +|. +....++.+....+.
T Consensus 477 i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~w 556 (1073)
T 3gjx_A 477 IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRF 556 (1073)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHH
Confidence 445555544443 44678999999999999755321122467777777763 1 1 122 233334455555555
Q ss_pred CCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccC--------cCcHHhHHHHHHHhccCCCHHHHHHH
Q 046417 168 APNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS--------KGVLDWLVPCLVEFLCCDDWATRKAA 239 (595)
Q Consensus 168 a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~--------~~yl~~lmp~L~e~L~~dDW~~RkaA 239 (595)
... -..||..++..|+..+...+-.++.++.+|+..|....+..+ .||++.++..+......=+-......
T Consensus 557 l~~-h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~l 635 (1073)
T 3gjx_A 557 LRA-HWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTF 635 (1073)
T ss_dssp HHH-CHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHH
T ss_pred HHh-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 321 136999999999999988888889999999999998665432 46888888777777666556677889
Q ss_pred HHHHHHHHHHhHH
Q 046417 240 AEVLGKVAVFDKD 252 (595)
Q Consensus 240 aEaLgsIA~avge 252 (595)
.|++|.|+.+++.
T Consensus 636 yeav~~vi~~~p~ 648 (1073)
T 3gjx_A 636 YEAVGYMIGAQTD 648 (1073)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999998863
No 101
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.57 E-value=0.00092 Score=67.00 Aligned_cols=129 Identities=18% Similarity=0.066 Sum_probs=73.5
Q ss_pred hhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc----CCc--ch
Q 046417 62 LQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT----KPS--FS 135 (595)
Q Consensus 62 L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~----~~~--~~ 135 (595)
|.....++++.+|.++...| + + ..+...++|+++.||.+++..+ ...+. +.+ .+
T Consensus 103 L~~ll~D~d~~VR~~aA~~l-------~----~------~~L~~L~~D~d~~VR~~aA~~l---~~~~l~~l~~D~d~~V 162 (244)
T 1lrv_A 103 LSALMFDEDREVRITVADRL-------P----L------EQLEQMAADRDYLVRAYVVQRI---PPGRLFRFMRDEDRQV 162 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHS-------C----T------GGGGGGTTCSSHHHHHHHHHHS---CGGGGGGTTTCSCHHH
T ss_pred HHHHHcCCCHHHHHHHHHhC-------C----H------HHHHHHHcCCCHHHHHHHHHhc---CHHHHHHHHcCCCHHH
Confidence 33434556788887777643 1 0 1345557788888877776532 11110 000 00
Q ss_pred ------hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh
Q 046417 136 ------VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG 209 (595)
Q Consensus 136 ------~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~ 209 (595)
....+++..|+.|.+..|...++..| + .+.|..+++++...++.+++..++
T Consensus 163 R~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l-------~----------~~~L~~Ll~D~d~~VR~~aa~~l~------ 219 (244)
T 1lrv_A 163 RKLVAKRLPEESLGLMTQDPEPEVRRIVASRL-------R----------GDDLLELLHDPDWTVRLAAVEHAS------ 219 (244)
T ss_dssp HHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC-------C----------GGGGGGGGGCSSHHHHHHHHHHSC------
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhC-------C----------HHHHHHHHcCCCHHHHHHHHHcCC------
Confidence 02223333444555555555555432 0 145677789999999988766543
Q ss_pred cccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHH
Q 046417 210 GARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGK 245 (595)
Q Consensus 210 g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgs 245 (595)
.+.|..+ .|++|.+|.+|++.||.
T Consensus 220 -----------~~~L~~L-~D~~~~VR~aa~~~L~~ 243 (244)
T 1lrv_A 220 -----------LEALREL-DEPDPEVRLAIAGRLGI 243 (244)
T ss_dssp -----------HHHHHHC-CCCCHHHHHHHHCCC--
T ss_pred -----------HHHHHHc-cCCCHHHHHHHHHHhCC
Confidence 2455555 89999999999998763
No 102
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.38 E-value=0.031 Score=55.96 Aligned_cols=131 Identities=7% Similarity=-0.047 Sum_probs=87.4
Q ss_pred HHHHhhhc--CCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhh-cCCCCChHHHHHHHHHHHHHHH-HccccchhhHHH
Q 046417 23 VITCLNKL--ADRDTLPVATAELESIARTLTQDSFSSFLNCLQT-TDSSSKSPVRKQCVNLLTLLSR-SHGDSLSPHLSK 98 (595)
Q Consensus 23 vl~~L~KL--~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d-~~ss~kp~vRKaaI~lLG~lAE-g~gd~I~PhLpk 98 (595)
++....+| +|.|+.|+.+..| |+.. . .....|+.|.+ ....+.|.+|+.+..+|+.++. ..++.
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~l--Lg~~-~--~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~------- 139 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFL--FGYL-S--KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK------- 139 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHH--HHHT-T--TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-------
T ss_pred HHHHHHHHHhCcchHHHHHHHHH--HHhc-c--CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-------
Confidence 34455555 3556777655553 3333 2 23455555554 3345569999999999999997 55663
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046417 99 MISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAI 165 (595)
Q Consensus 99 IL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaavi 165 (595)
+++.+..-++|++..||.++...+--.+...........+.|+++.|..|.+.+||.+-+.+|--+-
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 4557778889999999999988765433221001111367788888888999999999888776544
No 103
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=96.10 E-value=0.017 Score=68.52 Aligned_cols=154 Identities=17% Similarity=0.148 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhC-CcCcHHHHHHhhhhcCC-CCChHHHHHHHHHHHHHHHHccccc-hhhHHHHHHHHHhhccCCC-hhH
Q 046417 39 ATAELESIARTL-TQDSFSSFLNCLQTTDS-SSKSPVRKQCVNLLTLLSRSHGDSL-SPHLSKMISTVSCRLRDPD-SSV 114 (595)
Q Consensus 39 A~~~LD~lA~~L-~~~~lp~fL~~L~d~~s-s~kp~vRKaaI~lLG~lAEg~gd~I-~PhLpkIL~~IvrrLkD~d-s~V 114 (595)
|...|..|+..+ +++.++.++..|.+... ++.| +|..++..+-++.-.+.=.+ ...-.+|+.+++..|.|+. ..|
T Consensus 782 a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EV 860 (997)
T 1vsy_5 782 PVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEV 860 (997)
T ss_dssp SHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHH
Confidence 555677776554 45569999999988765 5789 99999888877777664333 2344689999999999999 999
Q ss_pred HHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCCh---------------hHHHHHHHHHHHHHhcCCCch--HHHHH
Q 046417 115 RSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDV---------------NSQVGGAMCLAAAIDAAPNPE--VEQLR 177 (595)
Q Consensus 115 R~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk---------------~VQ~~AA~cLaaviE~a~d~~--~~~L~ 177 (595)
|+.|+.+|+-|-..... ......++..+...-.+ ...-+|.++|.++|.+.|... .++++
T Consensus 861 Re~Aa~tLsgll~c~~~---~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P 937 (997)
T 1vsy_5 861 RVRAASILSDIVHNWKE---EQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIP 937 (997)
T ss_dssp HHHHHHHHHHHHHSCCS---HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHH
T ss_pred HHHHHHHHHHHHHcCCc---hhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccH
Confidence 99999999988754301 01122333333211101 234688999999999987664 57999
Q ss_pred HHHHHHHHhhccCchhHHHH
Q 046417 178 KLLPRLGKAVRIEGFKAKAA 197 (595)
Q Consensus 178 ~Ll~rL~klL~~~~~kaK~a 197 (595)
+++..|.....++.. ++..
T Consensus 938 ~~l~~La~~~~~~~~-i~~t 956 (997)
T 1vsy_5 938 KNLSNLSSWARTSGM-TGNA 956 (997)
T ss_dssp HHHHHHHTTSSSCSS-HHHH
T ss_pred HHHHHHHHHhCCCCc-hHHH
Confidence 999999988877643 4443
No 104
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.10 E-value=0.13 Score=51.50 Aligned_cols=147 Identities=10% Similarity=-0.068 Sum_probs=106.0
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHH-HhhcCChhHHHHHHHHHHHHHhc-CCCchH
Q 046417 96 LSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIEL-ILVEQDVNSQVGGAMCLAAAIDA-APNPEV 173 (595)
Q Consensus 96 LpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~a-Ll~d~nk~VQ~~AA~cLaaviE~-a~d~~~ 173 (595)
++.+++......+|+.=.||-.+++.||++ ... .-+.|++.. +..+.+=.|+..+|.++..++.. -++
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 667888888888888779999999999988 311 123455554 44577778999999999988863 333
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHh
Q 046417 174 EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDL 253 (595)
Q Consensus 174 ~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~ 253 (595)
.+++.+.....++++.+|-+++..+.-.+ ....+....+.++|.|.....|+++-+||+.+-.|.-++..-.+.
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~--~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWT--NRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGG--GSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHh--ccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 25566778889999999887765543211 011234445678899988889999999999999999888776666
Q ss_pred HHHHH
Q 046417 254 ATEYK 258 (595)
Q Consensus 254 f~py~ 258 (595)
+..|.
T Consensus 213 V~~~~ 217 (240)
T 3l9t_A 213 VKIEL 217 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 105
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.05 E-value=1.4 Score=44.24 Aligned_cols=162 Identities=17% Similarity=0.172 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHhhhcCC-CChHHH-HHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccch
Q 046417 16 TNDLKQRVITCLNKLAD-RDTLPV-ATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLS 93 (595)
Q Consensus 16 ~~~lk~rvl~~L~KL~D-rDT~r~-A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~ 93 (595)
...-+-|++.-|+.-.. .|..++ .+..+..++.+-+|..++.||+.+.+...+....+||.++.-++.++.-..
T Consensus 10 ~~~~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~---- 85 (257)
T 3gs3_A 10 TATARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV---- 85 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----
Confidence 45677888888887643 222333 444555555555677899999999887666678999999988777765544
Q ss_pred hhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchH
Q 046417 94 PHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEV 173 (595)
Q Consensus 94 PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~ 173 (595)
.+++++++.+...|+|.|+.|-.-+..+.+.+ ++-++..+.. ++++....-. .-
T Consensus 86 ~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i------------Y~~~l~~i~~--~~~~~~~~~~------------~W 139 (257)
T 3gs3_A 86 ELLPHVINVVSMLLRDNSAQVIKRVIQACGSI------------YKNGLQYLCS--LMEPGDSAEQ------------AW 139 (257)
T ss_dssp GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH------------HHHHHHHHTT--SSSCCHHHHH------------HH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH------------HHHHHHHHhc--CCCCcchHHH------------HH
Confidence 37778899999999999998855555443332 2333333321 1111100000 01
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH
Q 046417 174 EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVR 207 (595)
Q Consensus 174 ~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~ 207 (595)
..+..+-.+++.++++.+..+|..++-.+..++.
T Consensus 140 ~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 140 NILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 2444555666666666677777777766666653
No 106
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.99 E-value=0.71 Score=49.19 Aligned_cols=205 Identities=15% Similarity=0.178 Sum_probs=128.4
Q ss_pred hHHHHHHHHHhhhc---CCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccch
Q 046417 17 NDLKQRVITCLNKL---ADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLS 93 (595)
Q Consensus 17 ~~lk~rvl~~L~KL---~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~ 93 (595)
..-+-|++..|+.- +| |..=.-+..+..|+.+-+|+.++-||+.|.+...+++..+||.++--++..+....+
T Consensus 21 ~~~~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e--- 96 (386)
T 3o2t_A 21 MTTSERVVDLLNQAALITN-DSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE--- 96 (386)
T ss_dssp CCHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG---
T ss_pred ccHHHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH---
Confidence 34567788777766 33 333335566666666667888999999999877777889999999987776654444
Q ss_pred hhHHHHHHHHHhhccCCChhHHHHHHHHHHHhh----hhhcCCcc------h-----hccHHHHHHHhhcCChhHHHHHH
Q 046417 94 PHLSKMISTVSCRLRDPDSSVRSACVAATTAMS----LNITKPSF------S-----VLSKPLIELILVEQDVNSQVGGA 158 (595)
Q Consensus 94 PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA----~~l~~~~~------~-----~~l~PLi~aLl~d~nk~VQ~~AA 158 (595)
+++++++.+...|+|.|+.|-..+..+.+.+= +|++..+. . ..++--+-.++...+..|...+.
T Consensus 97 -l~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~ai 175 (386)
T 3o2t_A 97 -LLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAI 175 (386)
T ss_dssp -GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 57899999999999999998666665655544 44432221 1 12222222233345666776666
Q ss_pred HHHHHHHhc-C---CCc--------------------h--HHHH----HHHHHHHHHhhccCchhHHHHHHHHHHHHHHh
Q 046417 159 MCLAAAIDA-A---PNP--------------------E--VEQL----RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRV 208 (595)
Q Consensus 159 ~cLaaviE~-a---~d~--------------------~--~~~L----~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a 208 (595)
=-+..+|-. . .+. . .+.| ..++.+|++.|..+.... ..+..+|++++..
T Consensus 176 KFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss-~~l~a~lnsLa~I 254 (386)
T 3o2t_A 176 KFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISS-INLTTALGSLANI 254 (386)
T ss_dssp HHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHccccccc-HHHHHHHHHHHHH
Confidence 666776632 1 010 0 1122 258889999997654322 3444667777665
Q ss_pred hcccCcCcHHhHHHHHHHhc
Q 046417 209 GGARSKGVLDWLVPCLVEFL 228 (595)
Q Consensus 209 ~g~~~~~yl~~lmp~L~e~L 228 (595)
+..- +.|+..+++.|..+-
T Consensus 255 ak~R-P~~~~rIl~aL~~l~ 273 (386)
T 3o2t_A 255 ARQR-PMFMSEVIQAYETLH 273 (386)
T ss_dssp HHHS-GGGHHHHHHHHHHHH
T ss_pred HHhc-HHHHHHHHHHHHhhc
Confidence 5543 677888888887653
No 107
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.88 E-value=0.42 Score=57.57 Aligned_cols=179 Identities=12% Similarity=0.005 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhh-ccCC-------------------Ch--hHHHHHHHHHHHhhhh
Q 046417 71 SPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCR-LRDP-------------------DS--SVRSACVAATTAMSLN 128 (595)
Q Consensus 71 p~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr-LkD~-------------------ds--~VR~Ac~~aLg~LA~~ 128 (595)
+..|+...-++-.++...++...+++-..+...+.. |... .+ ...+|....+..+.+.
T Consensus 437 ~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~ 516 (1204)
T 3a6p_A 437 NSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQ 516 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999876665443333222221 1111 11 2356655556655544
Q ss_pred hcC----Ccch-hccHHHHHHHhh--cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc------------
Q 046417 129 ITK----PSFS-VLSKPLIELILV--EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRI------------ 189 (595)
Q Consensus 129 l~~----~~~~-~~l~PLi~aLl~--d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~------------ 189 (595)
+.+ +... ..+..|+..|+. ..++.+...+..|+.++.+..... .++|+.++..|+..+..
T Consensus 517 ~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~-p~~L~~vL~~ll~~l~~~~~~~~~~~~~~ 595 (1204)
T 3a6p_A 517 MFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYR-PEFLPQVFSKLFSSVTFETVEESKAPRTR 595 (1204)
T ss_dssp HHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTC-GGGHHHHHHHHHHHHHCCTTCSTTSCCCH
T ss_pred HhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhhccCCcccccccccH
Confidence 411 1111 246678887764 357778888999999988884332 26889999998888755
Q ss_pred CchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCC---HHHHHHHHHHHHHHHHHh
Q 046417 190 EGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDD---WATRKAAAEVLGKVAVFD 250 (595)
Q Consensus 190 ~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dD---W~~RkaAaEaLgsIA~av 250 (595)
....++.++-.++..++...+..+.||++.+...+...+.... -..+....|+|+.||..+
T Consensus 596 ~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~ 659 (1204)
T 3a6p_A 596 AVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQF 659 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccC
Confidence 2235777777888888887777778999999999999886433 677888999999997543
No 108
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.71 E-value=0.34 Score=54.84 Aligned_cols=229 Identities=14% Similarity=0.108 Sum_probs=138.6
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH---HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC
Q 046417 55 FSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS---KMISTVSCRLRDPDSSVRSACVAATTAMSLNITK 131 (595)
Q Consensus 55 lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp---kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~ 131 (595)
++.++.+| .+.+-.+|-.++.+|.+++...++.....+- .-++.++..|.|+...||..+.-.|..|+..-.+
T Consensus 124 i~~Ll~lL----~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~ 199 (651)
T 3grl_A 124 VTLLLSLL----EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGA 199 (651)
T ss_dssp HHHHHHHT----TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHh----cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHH
Confidence 55555555 3467899999999999999999875544433 5689999999999999999999888888865421
Q ss_pred -Ccchh---ccHHHHHHHhhcCC---hhHHHHHHHHHHHHHhcCCCchHHHHHH--HHHHHHHhhccC-------chhHH
Q 046417 132 -PSFSV---LSKPLIELILVEQD---VNSQVGGAMCLAAAIDAAPNPEVEQLRK--LLPRLGKAVRIE-------GFKAK 195 (595)
Q Consensus 132 -~~~~~---~l~PLi~aLl~d~n---k~VQ~~AA~cLaaviE~a~d~~~~~L~~--Ll~rL~klL~~~-------~~kaK 195 (595)
+..++ .|.+||..+-.+.. -.|......+|..+...-. .--.|+.+ .+++|.++|+.+ .-+.+
T Consensus 200 iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~-sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~ 278 (651)
T 3grl_A 200 IQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN-SNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVT 278 (651)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH-HHHHHHHHcCCHHHHHHHhCCCccccccHHHHHH
Confidence 12222 48889888854432 1233333444666665410 01134443 667777887532 11333
Q ss_pred H--HHHHHHHHHHHhhcc-----cCcCcH--HhHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhH---HhHHHHH---
Q 046417 196 A--AVLGVIGSVVRVGGA-----RSKGVL--DWLVPCLVEFLCCD--DWATRKAAAEVLGKVAVFDK---DLATEYK--- 258 (595)
Q Consensus 196 ~--alLsAIgSlA~a~g~-----~~~~yl--~~lmp~L~e~L~~d--DW~~RkaAaEaLgsIA~avg---e~f~py~--- 258 (595)
+ .++.+|+.+...++. .....+ ..+++.|.+++... .-.+|..|+-+++.+...-. +.|+.+.
T Consensus 279 N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~ 358 (651)
T 3grl_A 279 NLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPS 358 (651)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESS
T ss_pred HHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCC
Confidence 3 245667766543221 001111 23678888888754 45677766666666544221 3444321
Q ss_pred ----HHHHHHHHhccCCch-HHHHHHHHHHHHHhH
Q 046417 259 ----RSCLAALETRRFDKV-KIVRETMNRSLEMWK 288 (595)
Q Consensus 259 ----~~~I~~Le~crfDKV-K~VRda~~~aL~~~K 288 (595)
+.++..|-..-.+|- -.+|-++...++.+-
T Consensus 359 ~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 359 NPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp SSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 344554444434444 778988888887775
No 109
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=95.68 E-value=0.27 Score=49.43 Aligned_cols=178 Identities=11% Similarity=0.042 Sum_probs=124.2
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC--cch--hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchH
Q 046417 98 KMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP--SFS--VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEV 173 (595)
Q Consensus 98 kIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~--~~~--~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~ 173 (595)
..+..+...|.|-|+.|+..+..+++.+-....+. ... -+|.-++..+ .+.|..+-..|.-||..++|+.+-. .
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~ll-k~~dEkval~A~r~L~~LLe~vpL~-~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINAL-SQENEKVTIKALRALGYLVKDVPMG-S 110 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC-CSTTHHHHHHHHHHHHHHHTTCCBC-H
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHcCCCCC-H
Confidence 45667888899999999999999999888765211 000 1444444444 4788889999999999999986433 3
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH-
Q 046417 174 EQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD- 252 (595)
Q Consensus 174 ~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge- 252 (595)
..+.+++..|..+++.++--....+.+.+|.+ .-....+.++..|.+.+.+.|-++..+|+-+|-.||..-++
T Consensus 111 ~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 111 KTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 57789999999999988777777777777765 11233477888888888999999999999999999986542
Q ss_pred -hHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHh
Q 046417 253 -LATEYKRSCLAALETRRFDKVKIVRETMNRSLEMW 287 (595)
Q Consensus 253 -~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~ 287 (595)
.+.+-...+=.+|.+- =+.+++-+..+|.-+
T Consensus 185 ~i~~~I~~eI~elL~~e----D~~l~e~aLd~Le~i 216 (265)
T 3b2a_A 185 GHLTLILDEIPSLLQND----NEFIVELALDVLEKA 216 (265)
T ss_dssp CCGGGTTTTHHHHHTCS----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHH
Confidence 2222222222233322 356666655555443
No 110
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=94.85 E-value=0.6 Score=54.16 Aligned_cols=269 Identities=12% Similarity=0.080 Sum_probs=160.8
Q ss_pred hhHHHHHHHHHhhhcC-------CCChHHHHHHHHHHHHHhCC---cCcHHHHHHhhhhcCCC---CChHHHHHHHHHHH
Q 046417 16 TNDLKQRVITCLNKLA-------DRDTLPVATAELESIARTLT---QDSFSSFLNCLQTTDSS---SKSPVRKQCVNLLT 82 (595)
Q Consensus 16 ~~~lk~rvl~~L~KL~-------DrDT~r~A~~~LD~lA~~L~---~~~lp~fL~~L~d~~ss---~kp~vRKaaI~lLG 82 (595)
..+.+.+++.+|-.+. |.+....+...|..||---| .-.+|.+|..+..+.++ ..+..-..++++|.
T Consensus 329 t~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~ 408 (799)
T 1vsy_4 329 TSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFT 408 (799)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 4677777777664431 44455888999999998665 44499999999998877 34555567788888
Q ss_pred HHHHHcc--ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhc--CC----c---------------------
Q 046417 83 LLSRSHG--DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNIT--KP----S--------------------- 133 (595)
Q Consensus 83 ~lAEg~g--d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~--~~----~--------------------- 133 (595)
.++...- ..-.+|+..||..++..+-=.|+.==.++...+..++.++. +- .
T Consensus 409 ~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~ 488 (799)
T 1vsy_4 409 RVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKC 488 (799)
T ss_dssp TTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhcc
Confidence 8887664 34478999999999999988888766677777777765441 00 0
Q ss_pred ------------------------ch----hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Q 046417 134 ------------------------FS----VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGK 185 (595)
Q Consensus 134 ------------------------~~----~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~k 185 (595)
+. .|+.-++..+-+..+..+-..-..++..+++.+.+ +++..++.++.+
T Consensus 489 ~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~---~if~~~l~k~~~ 565 (799)
T 1vsy_4 489 GESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDD---KIFNYFASLLNR 565 (799)
T ss_dssp TCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCH---HHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHH
Confidence 00 13333333331122333333333334445554444 566777788888
Q ss_pred hhccCchh-HHHHHHHH----HHHHHHhhcccCcCcHHhHHHHHHHhcc----C-------------CCHHHHHHHHHHH
Q 046417 186 AVRIEGFK-AKAAVLGV----IGSVVRVGGARSKGVLDWLVPCLVEFLC----C-------------DDWATRKAAAEVL 243 (595)
Q Consensus 186 lL~~~~~k-aK~alLsA----IgSlA~a~g~~~~~yl~~lmp~L~e~L~----~-------------dDW~~RkaAaEaL 243 (595)
...++.+. +..++-.. +++++.+... .++.++|.|...+. + .|-. -.=-+-+|
T Consensus 566 fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~----~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~-L~w~l~iL 640 (799)
T 1vsy_4 566 NFWSNDSFKEKDPNYELVTIPLAALVRRNNG----LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVK-LVLYLTAL 640 (799)
T ss_dssp HHHSCSCCCSSSCCTHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHH-HHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHhccccccccccccCcchHH-HHHHHHHH
Confidence 77666443 21121122 3444444322 35556665553331 1 1211 11124455
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHhccCCch--HHHHH----HHHHHHHHhHhcCCC
Q 046417 244 GKVAVFDKDLATEYKRSCLAALETRRFDKV--KIVRE----TMNRSLEMWKEVPGV 293 (595)
Q Consensus 244 gsIA~avge~f~py~~~~I~~Le~crfDKV--K~VRd----a~~~aL~~~K~i~~~ 293 (595)
+.+....|..+-+|...++.++..+ ++|. +.+-. .+...|..+-.+...
T Consensus 641 ~~~v~~~g~~lL~y~deL~~il~~~-~~~~k~~~~~~~~~~ll~~lL~sLt~~yp~ 695 (799)
T 1vsy_4 641 NDVLRNCHESLLEYSDELITFMKYL-YDNVTNPPLDVITSIVIHSALATLCTTEIT 695 (799)
T ss_dssp HHHHTTTGGGGGTTHHHHHHHHHHH-HHSCCCHHHHHHHTTHHHHHHHHHHCCBCC
T ss_pred HHHHhcCcHHHHccHHHHHHHHHHH-HHHhcCcchHHHHHHHHHHHHHHhhheeec
Confidence 5555556788888999988888866 4443 33224 667778888777766
No 111
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=93.68 E-value=0.2 Score=56.60 Aligned_cols=146 Identities=14% Similarity=0.098 Sum_probs=89.8
Q ss_pred ccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHH-HH-HHHHH-HHHHhhccCchhHHHHHHHHHHHHHHhhcccC
Q 046417 137 LSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVE-QL-RKLLP-RLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS 213 (595)
Q Consensus 137 ~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~-~L-~~Ll~-rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~ 213 (595)
-+.||++-| ...+...+.+||.||..+++... ... .+ +.++. -|..+|.+++..++.+++++++.++..+|...
T Consensus 35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~--~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAK--CRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHH--HHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcH--HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 467999987 77889999999999999997421 112 22 23444 45668889999999999999999987655332
Q ss_pred cCcH--HhHHHHHHHhccCC---------------------CHHHHHHHHHHHHHHHHHhHHhHHH-----HHHHHHHHH
Q 046417 214 KGVL--DWLVPCLVEFLCCD---------------------DWATRKAAAEVLGKVAVFDKDLATE-----YKRSCLAAL 265 (595)
Q Consensus 214 ~~yl--~~lmp~L~e~L~~d---------------------DW~~RkaAaEaLgsIA~avge~f~p-----y~~~~I~~L 265 (595)
..++ ..++++|...+... -|..-..++-+|..++..-.+.+.. ..+.++..|
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 1111 22555555554210 1333334555666666544333322 234556666
Q ss_pred HhccCCch-HHHHHHHHHHHHHh
Q 046417 266 ETRRFDKV-KIVRETMNRSLEMW 287 (595)
Q Consensus 266 e~crfDKV-K~VRda~~~aL~~~ 287 (595)
.+. |+. .-|+.++.+.|..+
T Consensus 192 ~~~--~~~~~~v~~~a~~~L~~l 212 (684)
T 4gmo_A 192 ISA--DIAPQDIYEEAISCLTTL 212 (684)
T ss_dssp HHH--CCSCHHHHHHHHHHHHHH
T ss_pred Hhc--CCCcHHHHHHHHHHHHHH
Confidence 544 443 45777777777654
No 112
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=91.74 E-value=2.5 Score=40.92 Aligned_cols=128 Identities=16% Similarity=0.245 Sum_probs=84.9
Q ss_pred HHHHHHHHHhCC-cCcHHHHHHhhhhcC--CCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccC---CChh
Q 046417 40 TAELESIARTLT-QDSFSSFLNCLQTTD--SSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRD---PDSS 113 (595)
Q Consensus 40 ~~~LD~lA~~L~-~~~lp~fL~~L~d~~--ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD---~ds~ 113 (595)
.++|..+.++-. ...+|.|+..|.+.. .-.+...=...++....+..--.=++-|||..+||.++..+=. ....
T Consensus 26 ~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~ 105 (196)
T 4atg_A 26 DIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDD 105 (196)
T ss_dssp HHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHH
T ss_pred HHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHH
Confidence 345666666544 334888888887653 2224555555666666666655677899999999988766422 1127
Q ss_pred HHHHHHHHHHHhhhhhcCC--cch-hccHHHHHHHhh-cCChhHHHHHHHHHHHHHhc
Q 046417 114 VRSACVAATTAMSLNITKP--SFS-VLSKPLIELILV-EQDVNSQVGGAMCLAAAIDA 167 (595)
Q Consensus 114 VR~Ac~~aLg~LA~~l~~~--~~~-~~l~PLi~aLl~-d~nk~VQ~~AA~cLaaviE~ 167 (595)
+|+-++..|+.++....+. ... .+.+-|..+|+. ......+-||..+|.++...
T Consensus 106 LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~ 163 (196)
T 4atg_A 106 VRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKN 163 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHH
Confidence 9999999999999887542 111 266667777753 23445678999999998764
No 113
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.10 E-value=4 Score=48.53 Aligned_cols=187 Identities=14% Similarity=-0.031 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhCCc--CcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcccc--c--hhhHHHHHHHHHhhccCCCh
Q 046417 39 ATAELESIARTLTQ--DSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDS--L--SPHLSKMISTVSCRLRDPDS 112 (595)
Q Consensus 39 A~~~LD~lA~~L~~--~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~--I--~PhLpkIL~~IvrrLkD~ds 112 (595)
|++.|-.+.....| +.+..+...+.......++..|+.++++||.++..+... . ...++.|...+...+...+.
T Consensus 375 a~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~ 454 (1056)
T 1lsh_A 375 ATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKE 454 (1056)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCCh
Confidence 44555443332223 236666666544322345789999999999999865411 1 12355666667777777787
Q ss_pred hHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhh------cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh
Q 046417 113 SVRSACVAATTAMSLNITKPSFSVLSKPLIELILV------EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKA 186 (595)
Q Consensus 113 ~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~------d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~kl 186 (595)
.-+..+..|||-++..- .+++|...|-+ +....++.+|..||..+.... -..+-+-|+++
T Consensus 455 ~~~~~~LkaLGN~g~p~-------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-------p~~v~~il~~i 520 (1056)
T 1lsh_A 455 EEIVLALKALGNAGQPN-------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-------PRKVQEIVLPI 520 (1056)
T ss_dssp HHHHHHHHHHHHHTCGG-------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-------HHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCChh-------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-------hHHHHHHHHHH
Confidence 78899999999998622 23333333311 123458888888888776432 11334445555
Q ss_pred h--ccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Q 046417 187 V--RIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC-CDDWATRKAAAEVLGKVAV 248 (595)
Q Consensus 187 L--~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~-~dDW~~RkaAaEaLgsIA~ 248 (595)
+ ......+|.+++..+= .. .|- ...+..|...+. +.+-+++....-.|-.+|.
T Consensus 521 ~~n~~e~~EvRiaA~~~Lm---~t-----~P~-~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 521 FLNVAIKSELRIRSCIVFF---ES-----KPS-VALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHCTTSCHHHHHHHHHHHH---HT-----CCC-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred hcCCCCChHHHHHHHHHHH---HH-----CcC-HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 5 3347777766544332 11 122 234555555554 4666766555555555544
No 114
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=89.57 E-value=3.2 Score=40.22 Aligned_cols=128 Identities=12% Similarity=0.102 Sum_probs=81.5
Q ss_pred hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCC-CchHHHHH-HHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccC
Q 046417 136 VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAP-NPEVEQLR-KLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARS 213 (595)
Q Consensus 136 ~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~-d~~~~~L~-~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~ 213 (595)
.|+.-+.+++++ ..... ||+.+-...+ .+++||+- .+...+..-++ +...=..++..+.++..=-....
T Consensus 11 ~yf~~It~a~~~----~~r~~---aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl~N~~l~l 81 (196)
T 4atg_A 11 LYFDKILSMIKS----DMKDI---AIECLEKESGLQQLVPYFIQHISELILKSFK--EAEVLKTCIALYFSLIKNKHVFI 81 (196)
T ss_dssp HHHHHHHHHHTS----TTHHH---HHHHHHHCSSCTTTHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHh----HHHHH---HHHHHhcCCChhhhHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHcCCCCCh
Confidence 488888899865 12222 3344433322 33345553 35555555443 33322345667777665444556
Q ss_pred cCcHHhHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCch
Q 046417 214 KGVLDWLVPCLVEFLC----CDDWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKV 273 (595)
Q Consensus 214 ~~yl~~lmp~L~e~L~----~dDW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKV 273 (595)
.+|+-.+||++..++- ..+ .+|.-|+..|+.|....|+......+.+++.|...-.|..
T Consensus 82 epYlH~LipsvLtCll~k~l~~~-~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~ 144 (196)
T 4atg_A 82 DPYLHQILPSLLTCVIGKSIVDD-DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPN 144 (196)
T ss_dssp GGGHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCC
Confidence 8999999999999973 233 8999999999999999887555556666666666656654
No 115
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=88.90 E-value=19 Score=42.73 Aligned_cols=182 Identities=11% Similarity=0.030 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHH
Q 046417 39 ATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSAC 118 (595)
Q Consensus 39 A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac 118 (595)
....|-.+.+.++.+.|..++..+.+ ++..|+-- +.+|+...-.. -+.+|...++..+-..-+ +
T Consensus 312 ~f~~Lv~~lR~~~~e~L~~l~~~~~~-----~~~~r~~~---lDal~~aGT~~-------a~~~i~~~i~~~~l~~~e-a 375 (1056)
T 1lsh_A 312 KFLRLTAFLRNVDAGVLQSIWHKLHQ-----QKDYRRWI---LDAVPAMATSE-------ALLFLKRTLASEQLTSAE-A 375 (1056)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHTT-----SHHHHHHH---HHHHHHHCSHH-------HHHHHHHHHHTTCSCHHH-H
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc-----cHHHHHHH---HHHhHhcCCHH-------HHHHHHHHHHcCCCCHHH-H
Confidence 44556667777777777777777653 35566643 33343332221 122333334444433333 3
Q ss_pred HHHHHHhhhhhcCCcchhccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcC--C-Cc-hHHHHHHHHHHHHHhhccCc
Q 046417 119 VAATTAMSLNITKPSFSVLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAA--P-NP-EVEQLRKLLPRLGKAVRIEG 191 (595)
Q Consensus 119 ~~aLg~LA~~l~~~~~~~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a--~-d~-~~~~L~~Ll~rL~klL~~~~ 191 (595)
.++|..+. ++.. |...++.-+.+.+. ...++.+...+.++++.++-.. . .. ..++++.+...|.+.++...
T Consensus 376 ~~~l~~~~-~~~~-Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~ 453 (1056)
T 1lsh_A 376 TQIVASTL-SNQQ-ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAK 453 (1056)
T ss_dssp HHHHHHHH-HTCC-CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTC
T ss_pred HHHHHHhh-ccCC-CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 34444322 3222 22123333333331 1245566677888888877551 1 11 12456667777777777777
Q ss_pred hhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhcc-------CCCHHHHHHHHHHHHHHHH
Q 046417 192 FKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLC-------CDDWATRKAAAEVLGKVAV 248 (595)
Q Consensus 192 ~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~-------~dDW~~RkaAaEaLgsIA~ 248 (595)
...+...|-+||.+.. +..++.|..++. +..-.+|.+|+.+|..++.
T Consensus 454 ~~~~~~~LkaLGN~g~----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~ 507 (1056)
T 1lsh_A 454 EEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK 507 (1056)
T ss_dssp HHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG
T ss_pred hHHHHHHHHHhhccCC----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh
Confidence 6667777777775442 123344444432 1234566666666666654
No 116
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=86.76 E-value=9 Score=44.39 Aligned_cols=168 Identities=10% Similarity=0.107 Sum_probs=103.2
Q ss_pred HHHHhhhhcCCCCChHHHHHHHHHHHHHHHHcc---ccchhhHHHHHHHHHhhccC---CChhHHHHHHHHHHHhhhhhc
Q 046417 57 SFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHG---DSLSPHLSKMISTVSCRLRD---PDSSVRSACVAATTAMSLNIT 130 (595)
Q Consensus 57 ~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~g---d~I~PhLpkIL~~IvrrLkD---~ds~VR~Ac~~aLg~LA~~l~ 130 (595)
.+++.+.-..-+-+..+...++.+|..+|-..| +.|.| .|+..+...|.. .++.=-.+++.+|..++..+.
T Consensus 339 ~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP---~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv 415 (799)
T 1vsy_4 339 IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD---KILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIV 415 (799)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH---HHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH---HHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 333344333344457888999999999999887 88777 777777777766 555556678889999998887
Q ss_pred CCcc-hhccHHHHHHHhh---cCChhHHHHHHHHHHHHHhcCC--------C----------------------------
Q 046417 131 KPSF-SVLSKPLIELILV---EQDVNSQVGGAMCLAAAIDAAP--------N---------------------------- 170 (595)
Q Consensus 131 ~~~~-~~~l~PLi~aLl~---d~nk~VQ~~AA~cLaaviE~a~--------d---------------------------- 170 (595)
..+. -.++.||+..++. -+|..--..+...+..+.-..+ +
T Consensus 416 ~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 495 (799)
T 1vsy_4 416 MDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTF 495 (799)
T ss_dssp TSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSC
T ss_pred cCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccc
Confidence 5432 2477788877753 2333323334444444433210 0
Q ss_pred ----------------chHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh-cccCcCcHHhHHHHHHHhccC
Q 046417 171 ----------------PEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG-GARSKGVLDWLVPCLVEFLCC 230 (595)
Q Consensus 171 ----------------~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~-g~~~~~yl~~lmp~L~e~L~~ 230 (595)
.....+..++.|++.++++.. ...++..|.++...- +....+.++.++.-+.+|..+
T Consensus 496 ~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~---Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~ 569 (799)
T 1vsy_4 496 RVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDL---EDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWS 569 (799)
T ss_dssp CCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCC---CTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 011355578899999997631 133444444443322 333466778888888887654
No 117
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=86.72 E-value=33 Score=35.83 Aligned_cols=247 Identities=11% Similarity=0.081 Sum_probs=144.0
Q ss_pred CChhHHHHHHHHHhhhcCCC--C--hHHHHHHHHHHHHHh------------------------C-CcCcHHHHHHhhhh
Q 046417 14 PSTNDLKQRVITCLNKLADR--D--TLPVATAELESIART------------------------L-TQDSFSSFLNCLQT 64 (595)
Q Consensus 14 ~~~~~lk~rvl~~L~KL~Dr--D--T~r~A~~~LD~lA~~------------------------L-~~~~lp~fL~~L~d 64 (595)
-+++++-+.+..+|.+|.+. + ..+-+.+++...... + ..+.+..++.+|.
T Consensus 10 ktP~elVr~l~d~l~~l~~~~~~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~dll~~Li~~l~- 88 (341)
T 1upk_A 10 KSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQ- 88 (341)
T ss_dssp CCHHHHHHHHHHHHHHHHC---CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHSHHHHHHHTGG-
T ss_pred CCHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHHhcc-
Confidence 34678999999999999751 1 112243444332111 1 1122333333333
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHcc-------ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcc---
Q 046417 65 TDSSSKSPVRKQCVNLLTLLSRSHG-------DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSF--- 134 (595)
Q Consensus 65 ~~ss~kp~vRKaaI~lLG~lAEg~g-------d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~--- 134 (595)
.-+...||.+...|..+.+--. +++..| |+|+-.+++.-.++|... ..|.|-+.+++-..
T Consensus 89 ---~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl------~~G~mLRecir~e~la~ 158 (341)
T 1upk_A 89 ---LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIAL------NCGIMLRECIRHEPLAK 158 (341)
T ss_dssp ---GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHH------HHHHHHHHHHTSHHHHH
T ss_pred ---cCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHh------HHHHHHHHHHHhHHHHH
Confidence 3568999999999999887542 445444 799999999999998542 12444444433110
Q ss_pred ---h-hccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH----HHHHHHHHhhccCchhHHHHHHHHHHHHH
Q 046417 135 ---S-VLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR----KLLPRLGKAVRIEGFKAKAAVLGVIGSVV 206 (595)
Q Consensus 135 ---~-~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~----~Ll~rL~klL~~~~~kaK~alLsAIgSlA 206 (595)
. ..+-.+|+.+ ...+-.+...|..-+..+.-.=.....+||. .+...+-++|.+++|-.|-+.|-.+|-+.
T Consensus 159 ~iL~~~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 159 IILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL 237 (341)
T ss_dssp HHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHh-cCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 0 1344555555 3334334433333333332221122245554 67888889999999999999999999887
Q ss_pred Hh--hcccCcCcH--HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHH------hHHhHHHHHHHHHHHHHhccCCc
Q 046417 207 RV--GGARSKGVL--DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVF------DKDLATEYKRSCLAALETRRFDK 272 (595)
Q Consensus 207 ~a--~g~~~~~yl--~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~a------vge~f~py~~~~I~~Le~crfDK 272 (595)
-- .-.-...|+ +.-+-.+...|.+..-..+..|.-..-....- +-+.+..=....|++|....-||
T Consensus 238 ldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~ 313 (341)
T 1upk_A 238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR 313 (341)
T ss_dssp HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred hCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 42 111112232 22355556667777777777777777665432 12233334577888888888888
No 118
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=86.24 E-value=10 Score=42.94 Aligned_cols=152 Identities=13% Similarity=0.116 Sum_probs=101.0
Q ss_pred HHHHHHHHhhccCCCh-hHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHh---cCCC--
Q 046417 97 SKMISTVSCRLRDPDS-SVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAID---AAPN-- 170 (595)
Q Consensus 97 pkIL~~IvrrLkD~ds-~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE---~a~d-- 170 (595)
..-|+.++.||....- .=|.+|+.+|-.|++.+.......-+++|+..|-.+. ..+....+ +|+.++. ...+
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~-~D~e~v~~-~LetL~~l~~~~~~~~ 97 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDR-SDSEIIGY-ALDTLYNIISNDEEEE 97 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCT-TCHHHHHH-HHHHHHHHHCCC----
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhccc-ccHHHHHH-HHHHHHHHhCCCCccc
Confidence 3556778888876543 3499999999999986632111126899999995443 23332222 3454422 1111
Q ss_pred ----------chH-----HHH--HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcH---HhHHHHHHHhccC
Q 046417 171 ----------PEV-----EQL--RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVL---DWLVPCLVEFLCC 230 (595)
Q Consensus 171 ----------~~~-----~~L--~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl---~~lmp~L~e~L~~ 230 (595)
.+. .++ +.-++-|+.+|+.+.|.+|-.++.++..+...-......++ +..+|.|+++|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d 177 (651)
T 3grl_A 98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD 177 (651)
T ss_dssp ----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC
T ss_pred ccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC
Confidence 110 111 24578889999999999999999999988865544222222 3579999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q 046417 231 DDWATRKAAAEVLGKVAVFD 250 (595)
Q Consensus 231 dDW~~RkaAaEaLgsIA~av 250 (595)
+.-.+|-.|+..|..|...-
T Consensus 178 ~rE~iRneallLL~~Lt~~n 197 (651)
T 3grl_A 178 SREVIRNDGVLLLQALTRSN 197 (651)
T ss_dssp SSHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHhcCC
Confidence 88899999999999998643
No 119
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=86.04 E-value=16 Score=40.00 Aligned_cols=89 Identities=12% Similarity=0.128 Sum_probs=68.5
Q ss_pred CCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCC
Q 046417 32 DRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPD 111 (595)
Q Consensus 32 DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~d 111 (595)
+.-+-+.|++-+-.+...+| +.-..-+.++.+-..+++..+|+.+|+.|..+|.. .|+++|.-.+++.|+-.|
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP-~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFP-ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDD 113 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccc
Confidence 44478899999999999996 33334444444444456789999999997777655 578999999999999888
Q ss_pred hhHHHHHHHHHHHhhh
Q 046417 112 SSVRSACVAATTAMSL 127 (595)
Q Consensus 112 s~VR~Ac~~aLg~LA~ 127 (595)
+.-+.+.-++|-.|-.
T Consensus 114 ~~E~~~V~~sL~sllk 129 (507)
T 3u0r_A 114 SAEFNLVNNALLSIFK 129 (507)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh
Confidence 8888888888766664
No 120
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=80.65 E-value=6.5 Score=46.68 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=83.5
Q ss_pred HHHHHHHHHhhh-cCCCC---hHHHHHHHHHHHHHhC-CcCcHHHHHHhhhhcCCC---C--------Ch-HHHHHHHHH
Q 046417 18 DLKQRVITCLNK-LADRD---TLPVATAELESIARTL-TQDSFSSFLNCLQTTDSS---S--------KS-PVRKQCVNL 80 (595)
Q Consensus 18 ~lk~rvl~~L~K-L~DrD---T~r~A~~~LD~lA~~L-~~~~lp~fL~~L~d~~ss---~--------kp-~vRKaaI~l 80 (595)
+-+.+++.++.+ |.|.. -+..|+..|-.|.... +...+..++..+.+.... . +. ..|-++++.
T Consensus 839 ~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLg 918 (997)
T 1vsy_5 839 EEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLG 918 (997)
T ss_dssp THHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHH
Confidence 455788888888 68888 7888999999998887 523344555555544322 0 01 577899999
Q ss_pred HHHHHHHccccc--hhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhh
Q 046417 81 LTLLSRSHGDSL--SPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSL 127 (595)
Q Consensus 81 LG~lAEg~gd~I--~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~ 127 (595)
||++..+++=.+ =++||++|..+.+.+.||.+ |+..+-.|++.|=+
T Consensus 919 L~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkr 966 (997)
T 1vsy_5 919 LGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKK 966 (997)
T ss_dssp HHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHh
Confidence 999999999555 67999999999999999877 99999999888763
No 121
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=69.81 E-value=92 Score=30.98 Aligned_cols=127 Identities=12% Similarity=0.092 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHH
Q 046417 158 AMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRK 237 (595)
Q Consensus 158 A~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~Rk 237 (595)
...|..+-|-+-.....+++.+++.++.+..++...+|-.+++-|.-++ .. ...++..+++.|..++.++|-.+-|
T Consensus 33 l~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~---~~-k~~l~~~~l~~L~~Ll~d~d~~V~K 108 (257)
T 3gs3_A 33 CELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVC---KV-KVELLPHVINVVSMLLRDNSAQVIK 108 (257)
T ss_dssp HHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHH---HH-CGGGHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 3445555553211122488888888888877788889988888877555 22 3567889999999999999999999
Q ss_pred HHHHHHHHHHHHh-------H----------HhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcCC
Q 046417 238 AAAEVLGKVAVFD-------K----------DLATEYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVPG 292 (595)
Q Consensus 238 aAaEaLgsIA~av-------g----------e~f~py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~~ 292 (595)
.++.|.+.|=..+ + +.+..++..++..+++. ---||-.+..-++.+-.+-.
T Consensus 109 ~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~----n~gvkl~~iKF~e~vIl~qT 176 (257)
T 3gs3_A 109 RVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE----NDGIRTNAIKFLEGVVVLQS 176 (257)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS----CHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC----CcchHHHHHHHHHHHHHhhc
Confidence 9999988874321 0 13555666666665543 47888888888888886554
No 122
>3vh7_A Envelope glycoprotein GP160; 6-helix bundle, membrane fusion inhibition, membrane protein inhibitor complex; 2.02A {Human immunodeficiency virus type 1} PDB: 3vgy_C 3p7k_A
Probab=69.16 E-value=6.9 Score=30.79 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHH---HHHhccccchhhhhhhhhhhHHHHHH
Q 046417 480 LSLIREQLLQIENQQSSLFDLLQ---RFIGSSQSGMNSLETRVHGLEMALDE 528 (595)
Q Consensus 480 ~~~i~~ql~qie~qq~~l~~llq---~fmg~s~~~m~~le~rv~gle~~~d~ 528 (595)
|.-|-..|.=|-.||.+|+..++ -.....-=|+..|+.||.++|.-+.+
T Consensus 4 ~~~~~~~lsGivqQq~nlLraieaqq~ll~~tv~GikqlqarvlA~EryLkd 55 (58)
T 3vh7_A 4 MADIGSEFSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKS 55 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccc
Confidence 45577788888899999888663 44445556899999999999987753
No 123
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=68.81 E-value=88 Score=32.33 Aligned_cols=156 Identities=12% Similarity=0.180 Sum_probs=107.0
Q ss_pred HHHHHHh-hhhcCCCCChHHHH-HHHHHHHHHHHHccccchhhHHHHHHHHHhh----cc---CCChhHHHHHHHHHHHh
Q 046417 55 FSSFLNC-LQTTDSSSKSPVRK-QCVNLLTLLSRSHGDSLSPHLSKMISTVSCR----LR---DPDSSVRSACVAATTAM 125 (595)
Q Consensus 55 lp~fL~~-L~d~~ss~kp~vRK-aaI~lLG~lAEg~gd~I~PhLpkIL~~Ivrr----Lk---D~ds~VR~Ac~~aLg~L 125 (595)
+|+++.. |.|+..+ -|..|+ +.+.++.++..-.++.+.|++|.|+..+... ++ +.-|..|..=-.=|.++
T Consensus 71 ippLl~~VL~DY~~~-vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai 149 (321)
T 1w9c_A 71 VPPLLDAVLIDYQRN-VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAV 149 (321)
T ss_dssp HHHHHHHHHHHHHTS-CGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 7888864 4666443 365665 6677889999999999999999999987643 22 24477888887778888
Q ss_pred hhhhcCCcc--h-hccHHHHHHHh---hcCChhHHHHHHHHHHHHHhcCC--CchH-----HHHHHHHHHHHHhhcc---
Q 046417 126 SLNITKPSF--S-VLSKPLIELIL---VEQDVNSQVGGAMCLAAAIDAAP--NPEV-----EQLRKLLPRLGKAVRI--- 189 (595)
Q Consensus 126 A~~l~~~~~--~-~~l~PLi~aLl---~d~nk~VQ~~AA~cLaaviE~a~--d~~~-----~~L~~Ll~rL~klL~~--- 189 (595)
..++...-+ . ..++-+++++. .+.++.|...+--+|..++++.. +... .|.-.|+..++..+.+
T Consensus 150 ~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~H 229 (321)
T 1w9c_A 150 NSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSH 229 (321)
T ss_dssp HHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 877753100 0 25666777763 47789999999999888888742 2221 2444566666666643
Q ss_pred -CchhHHHHHHHHHHHHHHhhcc
Q 046417 190 -EGFKAKAAVLGVIGSVVRVGGA 211 (595)
Q Consensus 190 -~~~kaK~alLsAIgSlA~a~g~ 211 (595)
..|+.+..+|.-+=.++..+..
T Consensus 230 k~gF~~q~~iL~~lf~~ve~~~i 252 (321)
T 1w9c_A 230 TAGLTMHASILAYMFNLVEEGKI 252 (321)
T ss_dssp CTTHHHHHHHHHHHHHHHHTTCC
T ss_pred hccHHHHHHHHHHHHHHHHcCcc
Confidence 3788888888777777766544
No 124
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=67.18 E-value=1.4e+02 Score=32.16 Aligned_cols=142 Identities=19% Similarity=0.299 Sum_probs=73.1
Q ss_pred ccHHHHHHHhh---cCChhHHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHhhccCchhHHHHHHH-----HHHHHHH
Q 046417 137 LSKPLIELILV---EQDVNSQVGGAMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVRIEGFKAKAAVLG-----VIGSVVR 207 (595)
Q Consensus 137 ~l~PLi~aLl~---d~nk~VQ~~AA~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~~~~~kaK~alLs-----AIgSlA~ 207 (595)
+..+++..|+. -.+..-|..--.=|..++|..++.. ..++..|+.+|.+++.++++++-..++- .+-+++
T Consensus 281 L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li- 359 (449)
T 2npp_B 281 LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI- 359 (449)
T ss_dssp GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH-
T ss_pred hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHH-
Confidence 55677777764 2333334333333555565543322 3567789999999999999997766652 222222
Q ss_pred hhcccCcCcHHhHHHHHHHhcc---CCCH--HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhccCCchHHHHHHHHH
Q 046417 208 VGGARSKGVLDWLVPCLVEFLC---CDDW--ATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETRRFDKVKIVRETMNR 282 (595)
Q Consensus 208 a~g~~~~~yl~~lmp~L~e~L~---~dDW--~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~crfDKVK~VRda~~~ 282 (595)
..+-..++|.+...|. ...| .+|..|..+|..+...-.+.|.. |...+.. ++-+. .+...+
T Consensus 360 ------~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~----c~~~~~~---~~~~~-~~~~~~ 425 (449)
T 2npp_B 360 ------SDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDD----CTQQFKA---EKLKE-KLKMKE 425 (449)
T ss_dssp ------HTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHH----HHHHHHH---HHHHH-HHTSCC
T ss_pred ------HhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHH---HHHHH-HHHHHH
Confidence 1234456666666552 3455 46888888888776666555543 4333321 11111 111234
Q ss_pred HHHHhHhcCCC
Q 046417 283 SLEMWKEVPGV 293 (595)
Q Consensus 283 aL~~~K~i~~~ 293 (595)
-.+.|+.|...
T Consensus 426 r~~~W~~i~~~ 436 (449)
T 2npp_B 426 REEAWVKIENL 436 (449)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 45678887643
No 125
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=56.04 E-value=2e+02 Score=30.29 Aligned_cols=191 Identities=12% Similarity=0.104 Sum_probs=110.0
Q ss_pred hHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHH--------h
Q 046417 95 HLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAI--------D 166 (595)
Q Consensus 95 hLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaavi--------E 166 (595)
.|+++++.|+....|++..||.-++.=+...+.. +..+...+.+.+..|+.+.++.|...+..|.+.+. .
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~ 137 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVK 137 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677777777899999998777666555532 12222333344444457888888777776655443 2
Q ss_pred cCCC-----chHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh--cc-------------------cCcCcH---
Q 046417 167 AAPN-----PEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG--GA-------------------RSKGVL--- 217 (595)
Q Consensus 167 ~a~d-----~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~--g~-------------------~~~~yl--- 217 (595)
+-.. ..-..+..+-.+++.++++.+..+|..++-.+-.++.+- +. ..++++
T Consensus 138 ~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~ 217 (386)
T 3o2t_A 138 SRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYN 217 (386)
T ss_dssp C-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHH
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHH
Confidence 2121 122466778899999999999999999998888877521 10 023443
Q ss_pred ------HhHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHhc------cCCc--hHHHHHHHH
Q 046417 218 ------DWLVPCLVEFLCCD--DWATRKAAAEVLGKVAVFDKDLATEYKRSCLAALETR------RFDK--VKIVRETMN 281 (595)
Q Consensus 218 ------~~lmp~L~e~L~~d--DW~~RkaAaEaLgsIA~avge~f~py~~~~I~~Le~c------rfDK--VK~VRda~~ 281 (595)
..++..|..++..+ +-..--+.+.+|+.||..=..++. .++++|+.. -+-| ||.||.++-
T Consensus 218 ~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~----rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR 293 (386)
T 3o2t_A 218 VLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMS----EVIQAYETLHANLPPTLAKSQVSSVRKNLK 293 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHH----HHHHHHHHHHHCC----CGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHH----HHHHHHHhhcCCCCccHHHHHHHHHHHHHH
Confidence 33677777777642 223344556666666554333322 233332211 0122 467777766
Q ss_pred HHHHHhHhcC
Q 046417 282 RSLEMWKEVP 291 (595)
Q Consensus 282 ~aL~~~K~i~ 291 (595)
-.|--+-..|
T Consensus 294 ~~Ll~lLK~p 303 (386)
T 3o2t_A 294 LHLLSVLKHP 303 (386)
T ss_dssp HHHHHHHTSG
T ss_pred HHHHHHHcCC
Confidence 6655554444
No 126
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=55.17 E-value=2.2e+02 Score=30.32 Aligned_cols=113 Identities=18% Similarity=0.195 Sum_probs=67.0
Q ss_pred hccHHHHHHHhh---cCChhHHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHhhccCchhHHHHHH-----HHHHHHH
Q 046417 136 VLSKPLIELILV---EQDVNSQVGGAMCLAAAIDAAPNPE-VEQLRKLLPRLGKAVRIEGFKAKAAVL-----GVIGSVV 206 (595)
Q Consensus 136 ~~l~PLi~aLl~---d~nk~VQ~~AA~cLaaviE~a~d~~-~~~L~~Ll~rL~klL~~~~~kaK~alL-----sAIgSlA 206 (595)
.+..+++..|+. ..+..-|..--.=|..++|..++.. ..+...|+.++.+++.++++++-..++ ..+-+++
T Consensus 247 ~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li 326 (403)
T 3fga_B 247 TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI 326 (403)
T ss_dssp GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH
T ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHH
Confidence 366777777764 2343334433333556666553322 456778999999999999999766665 3333333
Q ss_pred HhhcccCcCcHHhHHHHHHHhcc---CC--CHHHHHHHHHHHHHHHHHhHHhHH
Q 046417 207 RVGGARSKGVLDWLVPCLVEFLC---CD--DWATRKAAAEVLGKVAVFDKDLAT 255 (595)
Q Consensus 207 ~a~g~~~~~yl~~lmp~L~e~L~---~d--DW~~RkaAaEaLgsIA~avge~f~ 255 (595)
. .+...++|.+...|. .. +-.+|..|..+|..+...-.+.|.
T Consensus 327 ~-------~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~ 373 (403)
T 3fga_B 327 S-------DNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFD 373 (403)
T ss_dssp H-------TTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred H-------HhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 1 223444555444441 23 446788888888877665555444
No 127
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=55.11 E-value=1.5e+02 Score=28.46 Aligned_cols=189 Identities=13% Similarity=0.095 Sum_probs=103.2
Q ss_pred HHHHHHHHhhhcCCCChHH--------------HHHHHHHHHHHhCCc-------CcHHHHHHhhhhcCCCCChHHHHHH
Q 046417 19 LKQRVITCLNKLADRDTLP--------------VATAELESIARTLTQ-------DSFSSFLNCLQTTDSSSKSPVRKQC 77 (595)
Q Consensus 19 lk~rvl~~L~KL~DrDT~r--------------~A~~~LD~lA~~L~~-------~~lp~fL~~L~d~~ss~kp~vRKaa 77 (595)
+...+++.|..++|.+.+. +-+-.|..+|+.+-. ..+..|+..|.+. .+|+.-
T Consensus 5 ~~~~i~~~L~~~ad~~~a~~~~~~~k~~~~~lGVr~P~lR~laK~~~k~~~~~~~~~~~~~~~~L~~~------~~~E~r 78 (232)
T 3jxy_A 5 FVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDL------PEREFQ 78 (232)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTSSBCCCCCHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHTS------SBHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCCCCCeeeccChHHHHHHHHHHHHhccccchhhHHHHHHHHhcC------cHHHHH
Confidence 5577888888888877544 233455556665421 1232455555542 357777
Q ss_pred HHHHHHHHHHcc---ccchhhHHHHHHHHHhhccCCChhHHHH-HHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhH
Q 046417 78 VNLLTLLSRSHG---DSLSPHLSKMISTVSCRLRDPDSSVRSA-CVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNS 153 (595)
Q Consensus 78 I~lLG~lAEg~g---d~I~PhLpkIL~~IvrrLkD~ds~VR~A-c~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~V 153 (595)
+.+++.+..... +...+.+..+++ ...+-.|-+. |..++|.+...- + ..+.+++.....+.+..+
T Consensus 79 ~~ai~~l~~~~k~~~~~~l~~~~~~l~------~~~nWd~~D~~a~~~~g~~~~~~---p--~~~~~~l~~W~~s~~~w~ 147 (232)
T 3jxy_A 79 AAALDIMQKYKKHINETHIPFLEELIV------TKSWWDSVDSIVPTFLGDIFLKH---P--ELISAYIPKWIASDNIWL 147 (232)
T ss_dssp HHHHHHHHHTGGGCCGGGHHHHHHHHT------SSCCHHHHHHHTTTHHHHHHHHC---G--GGGGGTHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc------cCCChHHHHHhhHHHHHHHHHHC---H--HHHHHHHHHHhcCCchHH
Confidence 777777764322 222334443333 2344444333 345556555432 1 123345555557888888
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCH
Q 046417 154 QVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDW 233 (595)
Q Consensus 154 Q~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW 233 (595)
+-.|+.++-..... . -...+.+.+..+++++.+-++.++-=+++. ++ .-.-+.+++.|.+. .-+.|
T Consensus 148 rR~ai~~~l~~~~~--~----d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~---~~----k~~p~~v~~fl~~~-~l~~~ 213 (232)
T 3jxy_A 148 QRAAILFQLKYKQK--M----DEELLFWIIGQLHSSKEFFIQKAIGWVLRE---YA----KTNPDVVWEYVQNN-ELAPL 213 (232)
T ss_dssp HHHHHHTTTTCGGG--C----CHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---HT----TTCHHHHHHHHHHS-CCCHH
T ss_pred HHHHHHHHHHHHhC--C----CHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HH----hhCHHHHHHHHHHC-CCCHH
Confidence 87777764222211 1 122344555567889999888876555543 22 23346677777664 44677
Q ss_pred HHHHH
Q 046417 234 ATRKA 238 (595)
Q Consensus 234 ~~Rka 238 (595)
..|++
T Consensus 214 ~~r~A 218 (232)
T 3jxy_A 214 SKREA 218 (232)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 128
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=54.15 E-value=2.8e+02 Score=34.00 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHH-HHHHHHHHHHccccchhhH
Q 046417 18 DLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQC-VNLLTLLSRSHGDSLSPHL 96 (595)
Q Consensus 18 ~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaa-I~lLG~lAEg~gd~I~PhL 96 (595)
.+++-++..|-++-|++-+.-++.+|..+-.. ++....++|.+|.... -++...+.. -++++.+. ++. ...|
T Consensus 172 ~lQ~diI~sLPeIl~ds~H~~v~~~L~~lL~~-~~~L~~~iLdaLs~L~--Ls~~~l~~vr~~vl~~L~-s~~---~e~L 244 (1323)
T 3s4w_B 172 NLQHDFITSLPEILGDSQHANVGKELGELLVQ-NTSLTVPILDVFSSLR--LDPNFLSKIRQLVMGKLS-SVR---LEDF 244 (1323)
T ss_dssp TTHHHHHHTHHHHSCGGGHHHHHHHHHHHHHH-CSTTHHHHHHHHHHSC--CCHHHHHHHHHHHHHSTT-SSC---TTHH
T ss_pred HHHHHHHHHhHHHhcchhhHHHHHHHHHHHhc-CcchHHHHHHHHHcCC--CCHHHHHHHHHHHHHHhc-cCC---hhhh
Confidence 57777888888887767666777777665544 4556888999998853 234333332 23333333 232 4478
Q ss_pred HHHHHHHHhhccCCC
Q 046417 97 SKMISTVSCRLRDPD 111 (595)
Q Consensus 97 pkIL~~IvrrLkD~d 111 (595)
|-+|.||++.....+
T Consensus 245 P~lIkFLL~s~t~~~ 259 (1323)
T 3s4w_B 245 PVIVKFLLHSVTDTT 259 (1323)
T ss_dssp HHHHHHHHHSCSSTT
T ss_pred HHHHHHHHHhCCHhh
Confidence 899999998886544
No 129
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=53.07 E-value=50 Score=29.70 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH--HHHHHHHHhhccCCChhH
Q 046417 37 PVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL--SKMISTVSCRLRDPDSSV 114 (595)
Q Consensus 37 r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL--pkIL~~IvrrLkD~ds~V 114 (595)
..-++-.|.+-.. ++.-.-.+..|.-.+.+.++.+.-.++.+|..++.-||......+ .+.+..+++.++.+++.|
T Consensus 24 ~~ileicD~I~~~--~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~V 101 (140)
T 3ldz_A 24 GLILDICDKVGQS--RTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKV 101 (140)
T ss_dssp HHHHHHHHHHTTS--TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHCC--CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHH
Confidence 3444444554432 222233344444444556788888999999999999996554332 233444444445578899
Q ss_pred HHHHHHHHHHhhhhhcCCc
Q 046417 115 RSACVAATTAMSLNITKPS 133 (595)
Q Consensus 115 R~Ac~~aLg~LA~~l~~~~ 133 (595)
+.-+...+-..+..+...+
T Consensus 102 k~kil~li~~W~~~f~~~~ 120 (140)
T 3ldz_A 102 CEKLKALMVEWTDEFKNDP 120 (140)
T ss_dssp HHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 9999888888887665443
No 130
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=48.39 E-value=1.5e+02 Score=26.48 Aligned_cols=70 Identities=7% Similarity=0.041 Sum_probs=51.6
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH--HHHHHHHHHhhccCchhHHHHHHHHHHHHHHhh
Q 046417 139 KPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL--RKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVG 209 (595)
Q Consensus 139 ~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L--~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~ 209 (595)
+-|-.-| ...++++|..|-.-|+.++.+.+......+ .+++..|.++++..+..+|.-++..|.+-+.+-
T Consensus 45 rai~Krl-~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 45 RSIMRRV-NHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp HHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 3344445 568899999999889999999876543222 356666777777678889999999998887653
No 131
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=47.27 E-value=2.7e+02 Score=29.02 Aligned_cols=147 Identities=14% Similarity=0.076 Sum_probs=91.1
Q ss_pred HHHHHHHhhhcC--CCChHHHHHHHHHH-HHHhCC-------cCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHc-
Q 046417 20 KQRVITCLNKLA--DRDTLPVATAELES-IARTLT-------QDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSH- 88 (595)
Q Consensus 20 k~rvl~~L~KL~--DrDT~r~A~~~LD~-lA~~L~-------~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~- 88 (595)
-.++-+++.||. +.+..+-|+..|.. +....+ .+.+..++..+.+. +.....+++++|+.+-+-.
T Consensus 117 s~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~----~gN~q~Y~L~AL~~LM~~v~ 192 (339)
T 3dad_A 117 SVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA----DHNYQSYILRALGQLMLFVD 192 (339)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS----CHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc----ChHHHHHHHHHHHHHHhccc
Confidence 378999999994 56688889999988 433222 34466666666543 6788999999999998731
Q ss_pred c-ccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCC-cc-------------hhccHHHHHHHh--hcCCh
Q 046417 89 G-DSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKP-SF-------------SVLSKPLIELIL--VEQDV 151 (595)
Q Consensus 89 g-d~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~-~~-------------~~~l~PLi~aLl--~d~nk 151 (595)
| +.+..| +..|.-|...+...+..|-..+..-|-.+..+.... +. ...+..|+..|- +..|.
T Consensus 193 Gm~gvvs~-~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 193 GMLGVVAH-SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp HHHHHHHC-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred cccchhCC-HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 1 344333 344555555555566677666666666665544110 00 013667777772 13566
Q ss_pred hHHHHHHHHHHHHHhcCCCc
Q 046417 152 NSQVGGAMCLAAAIDAAPNP 171 (595)
Q Consensus 152 ~VQ~~AA~cLaaviE~a~d~ 171 (595)
.+|.-|..=+-+.+..+++.
T Consensus 272 elq~~amtLIN~lL~~apd~ 291 (339)
T 3dad_A 272 ELLVYTVTLINKTLAALPDQ 291 (339)
T ss_dssp HHHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHhcCCCh
Confidence 67766555566677776653
No 132
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=46.85 E-value=1.7e+02 Score=26.81 Aligned_cols=108 Identities=12% Similarity=0.113 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHH--HHHHHHhhccC-CCh
Q 046417 36 LPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSK--MISTVSCRLRD-PDS 112 (595)
Q Consensus 36 ~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpk--IL~~IvrrLkD-~ds 112 (595)
...-++-.|.+-.. +..-...+..|...+.+.++.+.-.++.+|..++.-||......+.. ++..+++.+.. .++
T Consensus 33 w~~~leicD~I~~~--~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~ 110 (163)
T 1x5b_A 33 WSLIMDICDKVGST--PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHP 110 (163)
T ss_dssp HHHHHHHHHHHHHS--SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCH
Confidence 33445555666553 23334445555555556678999999999999999999655432221 33333344333 577
Q ss_pred hHHHHHHHHHHHhhhhhcCCcchhccHHHHHHH
Q 046417 113 SVRSACVAATTAMSLNITKPSFSVLSKPLIELI 145 (595)
Q Consensus 113 ~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aL 145 (595)
.|+.-+..-+-..+..+...+...++.-+...|
T Consensus 111 ~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~L 143 (163)
T 1x5b_A 111 KVCEKLKSLMVEWSEEFQKDPQFSLISATIKSM 143 (163)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 899988888777777665433222344444444
No 133
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=42.33 E-value=5.6e+02 Score=31.41 Aligned_cols=250 Identities=13% Similarity=0.073 Sum_probs=132.1
Q ss_pred HHHHHHHHhhhc-CCCC-hHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhH
Q 046417 19 LKQRVITCLNKL-ADRD-TLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHL 96 (595)
Q Consensus 19 lk~rvl~~L~KL-~DrD-T~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhL 96 (595)
.+..+-+.|.|. ...- |.+.....+..-...| .+.++.+|........+.++.+|..+..+|..+=..+.++. =
T Consensus 361 ~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL-~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~---q 436 (1323)
T 3s4w_B 361 TKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVL-KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYC---Q 436 (1323)
T ss_dssp HHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHH---H
T ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchh---H
Confidence 444444554444 2222 5555555555444444 45588888887777788889999999999999998885432 2
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcC--CcchhccHHHHHHHhhcCChhHHHHHHHH---HHHHHhcCCCc
Q 046417 97 SKMISTVSCRLRDPDSSVRSACVAATTAMSLNITK--PSFSVLSKPLIELILVEQDVNSQVGGAMC---LAAAIDAAPNP 171 (595)
Q Consensus 97 pkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~--~~~~~~l~PLi~aLl~d~nk~VQ~~AA~c---LaaviE~a~d~ 171 (595)
.+|+..++..+......=-+++.+.|..|+..... .++..+++.+++.| +.-.-.|+.-.+. -.++-+....
T Consensus 437 qeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a~~l~giLD~l--~~l~~~QiRklf~iL~~laf~~~~~~- 513 (1323)
T 3s4w_B 437 QEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNAAFVKGILDYL--ENMSPQQIRKIFCILSTLAFSQQPGT- 513 (1323)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHGGGGGG--GGCCHHHHHHHHHHHHHHHHHHCSSC-
T ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHcCCCCCc-
Confidence 34554444443333332234577888888864321 12234777777777 2233345554443 2233333211
Q ss_pred hHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHhhcccCcCc-HHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 046417 172 EVEQLRKLLPRLGKAVRIEGFKAKAAVLGVIGSVVRVGGARSKGV-LDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFD 250 (595)
Q Consensus 172 ~~~~L~~Ll~rL~klL~~~~~kaK~alLsAIgSlA~a~g~~~~~y-l~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~av 250 (595)
...+-.++.=-+-|.|.++..+.|- ++.||++..++-.+-... .....+ +...-++ ...+.+...|..+-..+
T Consensus 514 ~~~i~ddl~ivIRKQLs~~~~~~Kr--iGIIGav~~v~~~~~~~~~~~~s~~---~~~~l~~-~~~~q~~~Ll~lv~~s~ 587 (1323)
T 3s4w_B 514 SNHIQDDMHLVIRKQLSSTVFKYKL--IGIIGAVTMAGIMAEDRSVPSNSSQ---RSANVSS-EQRTQVTSLLQLVHSCT 587 (1323)
T ss_dssp CCHHHHHHHHHHHHHHTCSSHHHHH--HHHHHHHHHHHHTTC-------------------C-HHHHHHHHHHHHHHHHH
T ss_pred chhhHHhHHHHHHHHHhCCchhhhh--hhHHHHHHHHHHHHHhccccCcccc---ccccCCH-HHHHHHHHHHHHHHHHh
Confidence 1123344555555788888877764 445555444321110000 011111 1111122 22345666666665555
Q ss_pred H---HhHHHHHHHHHHHHHhccCCch--HHHHHHHH
Q 046417 251 K---DLATEYKRSCLAALETRRFDKV--KIVRETMN 281 (595)
Q Consensus 251 g---e~f~py~~~~I~~Le~crfDKV--K~VRda~~ 281 (595)
+ +..+=|-.+.-.++..+++|.- ..+-+.+.
T Consensus 588 ~~sp~~~AL~YDELA~~i~~~~l~~~~~~wi~~~i~ 623 (1323)
T 3s4w_B 588 EHSPWASSLYYDEFANLIQERKLAPKTLEWVGQTIF 623 (1323)
T ss_dssp SSSHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3 4566666777778888888863 44555543
No 134
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=39.82 E-value=1.7e+02 Score=28.16 Aligned_cols=130 Identities=11% Similarity=0.034 Sum_probs=77.8
Q ss_pred ChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHH-HHHHHHHHHHHccccchhhHHHHHHHHHhhccCCCh
Q 046417 34 DTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQ-CVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDS 112 (595)
Q Consensus 34 DT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKa-aI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds 112 (595)
+-+-+|+..|......+.++.++.+-..|.. -++|.+=-. |..++|.+...+++.+. +.+.+-+.|++.
T Consensus 76 E~r~~ai~~l~~~~k~~~~~~l~~~~~~l~~---~~nWd~~D~~a~~~~g~~~~~~p~~~~-------~~l~~W~~s~~~ 145 (232)
T 3jxy_A 76 EFQAAALDIMQKYKKHINETHIPFLEELIVT---KSWWDSVDSIVPTFLGDIFLKHPELIS-------AYIPKWIASDNI 145 (232)
T ss_dssp HHHHHHHHHHHHTGGGCCGGGHHHHHHHHTS---SCCHHHHHHHTTTHHHHHHHHCGGGGG-------GTHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc---CCChHHHHHhhHHHHHHHHHHCHHHHH-------HHHHHHhcCCch
Confidence 3444566666555556667666655444442 356755333 34566666665555333 456666788999
Q ss_pred hHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH
Q 046417 113 SVRSACVAATTAMSLNITKPSFSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR 177 (595)
Q Consensus 113 ~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~ 177 (595)
-+|.++...+ +.. ..+ .....+.++++.++++.+-.||.+.+-+|..+.-.-++.+.+||.
T Consensus 146 w~rR~ai~~~--l~~-~~~-~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~ 206 (232)
T 3jxy_A 146 WLQRAAILFQ--LKY-KQK-MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQ 206 (232)
T ss_dssp HHHHHHHHTT--TTC-GGG-CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHH--HHH-HhC-CCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 8888886543 332 211 111245567777778889999999999988776543333344554
No 135
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=37.12 E-value=46 Score=32.37 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=49.5
Q ss_pred hhcCCCCChHHHHHHHHHHH-HHHHHcccc-chhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhh
Q 046417 63 QTTDSSSKSPVRKQCVNLLT-LLSRSHGDS-LSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNI 129 (595)
Q Consensus 63 ~d~~ss~kp~vRKaaI~lLG-~lAEg~gd~-I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l 129 (595)
..-..+++.-.|+.++...+ .++..+... -..++..++..+...+.|++--||.|..|+|..++..-
T Consensus 114 ~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~ 182 (235)
T 1t06_A 114 DKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISY 182 (235)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhC
Confidence 33344577888999998332 234333332 35688899999999999999999999999998888653
No 136
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=36.39 E-value=59 Score=30.14 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=46.7
Q ss_pred CCCChhHHHHHHHHHhhhc-CCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHH
Q 046417 12 PPPSTNDLKQRVITCLNKL-ADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLL 84 (595)
Q Consensus 12 ~~~~~~~lk~rvl~~L~KL-~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~l 84 (595)
|+.+-+++++++..++.+. +.+|+ .=|+.+++.+. .|+..+.|+..+....-+-+...|+.+..+|..+
T Consensus 2 p~~s~ee~~kk~~~ii~EYf~~~D~-~Ea~~~l~eL~---~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L 71 (165)
T 2rg8_A 2 LPLDERAFEKTLTPIIQEYFEHGDT-NEVAEMLRDLN---LGEMKSGVPVLAVSLALEGKASHREMTSKLLSDL 71 (165)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHT---CSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHhC---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556789999999999998 55554 34455555443 2445666666665543334678899998988776
No 137
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=35.43 E-value=1e+02 Score=29.40 Aligned_cols=97 Identities=9% Similarity=-0.070 Sum_probs=59.8
Q ss_pred CChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcchhccHHHHHHHhhc
Q 046417 69 SKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFSVLSKPLIELILVE 148 (595)
Q Consensus 69 ~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~~~l~PLi~aLl~d 148 (595)
++|.+=-....++|-+...+++ .+.+.|.+-++|++.-+|.++..++ | .|. +......+.++++.++++
T Consensus 102 ~nWd~~D~~a~~~~~~~~~~~~-------~~~~~i~~W~~s~~~w~rR~ai~~~--l-~~~-~~~~~~~~~~i~~~~~~d 170 (220)
T 2b6c_A 102 AWWDSVDAWRKFFGSWVALHLT-------ELPTIFALFYGAENFWNRRVALNLQ--L-MLK-EKTNQDLLKKAIIYDRTT 170 (220)
T ss_dssp CSHHHHHHHHHHHHHHHHHSGG-------GHHHHHHHHTTCSSHHHHHHHHHTT--T-TCG-GGCCHHHHHHHHHHTTTC
T ss_pred CcHHHHHHHHHHHHHHHHHChH-------HHHHHHHHHHcCCCHHHHHHHHHHH--H-HHH-HCCCHHHHHHHHHHhCCC
Confidence 4565444333444444444433 4566788888999999988887643 3 232 222223556777777688
Q ss_pred CChhHHHHHHHHHHHHHhcCCCchHHHH
Q 046417 149 QDVNSQVGGAMCLAAAIDAAPNPEVEQL 176 (595)
Q Consensus 149 ~nk~VQ~~AA~cLaaviE~a~d~~~~~L 176 (595)
.+-.||.+.+-+|..+.---++...+||
T Consensus 171 ~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 171 EEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp CCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 8899999999988876643333333444
No 138
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=34.40 E-value=1.6e+02 Score=26.84 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=0.0
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH--HHHHHHHHHhhc------cCchhHHHHHHHHHHHHHHh
Q 046417 138 SKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL--RKLLPRLGKAVR------IEGFKAKAAVLGVIGSVVRV 208 (595)
Q Consensus 138 l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L--~~Ll~rL~klL~------~~~~kaK~alLsAIgSlA~a 208 (595)
++-|..-| ...|+++|..|-.-|+..+.+.+......+ .+++..|.+++. ..+..+|.-++..|.+-+.+
T Consensus 50 ~ral~krl-~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 50 TRLLAHKI-QSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
No 139
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=34.10 E-value=4.1e+02 Score=30.01 Aligned_cols=108 Identities=7% Similarity=-0.027 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhhhcCCcch-hccHHHHHHHhh--
Q 046417 71 SPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLNITKPSFS-VLSKPLIELILV-- 147 (595)
Q Consensus 71 p~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~l~~~~~~-~~l~PLi~aLl~-- 147 (595)
+.+.+.-+..|+.|+..++. ||..++..|++.+.-+... ..-+-.+|..+.+.+ |.. ..|.|++..=+-
T Consensus 152 ~~~v~~Y~~FL~~LvSa~~~----yl~~vl~mLV~~F~~~~~~-~~~~H~~L~~Il~lv---P~s~~~L~~iL~~~FP~~ 223 (649)
T 3tj1_A 152 PHTLSKYIYFIKILCSSIPK----WWQDVSMILVSCFILPIKQ-TVCHHDMLKYFLRMI---PSSMGFIDTYLAKFFPNK 223 (649)
T ss_dssp HHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHHHC---GGGHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHhccCCCcc-cHHHHHHHHHHHHHc---CCCHHHHHHHHHHhCCCC
Confidence 35668888889999999987 4555555666665544222 122344555555544 221 234443333222
Q ss_pred cCChhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh
Q 046417 148 EQDVNSQVGGAMCLAAAIDAAPNPEVEQLRKLLPRLGKA 186 (595)
Q Consensus 148 d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~~Ll~rL~kl 186 (595)
...+.++..=..-|-.+++-+++.-..+|.-++.|++++
T Consensus 224 ~~s~~~~~~Yv~NLLrl~~Y~PeL~~~Il~LIierliki 262 (649)
T 3tj1_A 224 NDTRRKLVNYTSNLLKLRGYCSELGFQIWSLLIEKIISI 262 (649)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Confidence 233445554444466666666654456677777776653
No 140
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=33.56 E-value=2.1e+02 Score=26.28 Aligned_cols=72 Identities=11% Similarity=0.088 Sum_probs=51.7
Q ss_pred HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHH------HHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417 218 DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLAT------EYKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 218 ~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~------py~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~ 291 (595)
..++..|...|.+.+=.+...|+..|-.+..-+|..|. .|+..+++++. -+.| ..||+-+.+.|+.|.+-.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~-~~~~--~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIK-NKAH--PKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHH-TTCC--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHc-cCCC--HHHHHHHHHHHHHHHHHh
Confidence 34455666667666656677788888888888886554 34566667675 2344 589999999999999865
Q ss_pred C
Q 046417 292 G 292 (595)
Q Consensus 292 ~ 292 (595)
.
T Consensus 128 ~ 128 (163)
T 1x5b_A 128 Q 128 (163)
T ss_dssp T
T ss_pred c
Confidence 4
No 141
>1qbz_A Protein (SIV GP41 ectodomain); HIV, membrane fusion, peptide inhibitor, coiled coil, SIV envelope glycoprotein GP41; 1.47A {Simian immunodeficiency virus} SCOP: h.3.2.1 PDB: 1qce_A 2ezo_A 2ezp_A 2ezq_A 2ezr_A 2ezs_A 2siv_B 2siv_A
Probab=32.82 E-value=56 Score=29.34 Aligned_cols=41 Identities=32% Similarity=0.459 Sum_probs=29.3
Q ss_pred HHHHHHhhHHHHHH---HHHHhccccchhhhhhhhhhhHHHHHH
Q 046417 488 LQIENQQSSLFDLL---QRFIGSSQSGMNSLETRVHGLEMALDE 528 (595)
Q Consensus 488 ~qie~qq~~l~~ll---q~fmg~s~~~m~~le~rv~gle~~~d~ 528 (595)
.=|=.||.+|+..+ |-...-+.=|+..|..||..+|+-+.+
T Consensus 8 ~givqqq~nllraieaqq~ll~ltvwGikqLqaRvlA~Erylkd 51 (123)
T 1qbz_A 8 AGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKD 51 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhcccccccc
Confidence 34566677776664 234445556999999999999999865
No 142
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=30.58 E-value=1.6e+02 Score=26.75 Aligned_cols=75 Identities=12% Similarity=-0.005 Sum_probs=52.0
Q ss_pred HHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHHHH---HHHHHHhccC--C------chHHHHHHHHHHHH
Q 046417 217 LDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYKRS---CLAALETRRF--D------KVKIVRETMNRSLE 285 (595)
Q Consensus 217 l~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~~~---~I~~Le~crf--D------KVK~VRda~~~aL~ 285 (595)
+..+|..|...|.+..|....-|+.+|-.+...-.+-|...+.. .|+.|.++++ | .-.-||+.+.+.+.
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 57889999999999999887777777777753323555555533 3444555544 2 23889999999998
Q ss_pred HhHhcC
Q 046417 286 MWKEVP 291 (595)
Q Consensus 286 ~~K~i~ 291 (595)
++..-.
T Consensus 127 ll~d~~ 132 (140)
T 1vdy_A 127 AIFSEE 132 (140)
T ss_dssp HHTCCS
T ss_pred HHhCcC
Confidence 887543
No 143
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=30.24 E-value=83 Score=30.08 Aligned_cols=63 Identities=10% Similarity=-0.012 Sum_probs=46.8
Q ss_pred HhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHhhccCCChhHHHHHHHHHHHhhhh
Q 046417 60 NCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLSKMISTVSCRLRDPDSSVRSACVAATTAMSLN 128 (595)
Q Consensus 60 ~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLpkIL~~IvrrLkD~ds~VR~Ac~~aLg~LA~~ 128 (595)
..|.+-..+++..+|+.++..+ + .+.+ ..+...+++.+-+.+.|++--||.|..|+|..++..
T Consensus 127 ~~i~~W~~s~~~w~rR~ai~~~--l--~~~~--~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 127 TIFALFYGAENFWNRRVALNLQ--L--MLKE--KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HHHHHHTTCSSHHHHHHHHHTT--T--TCGG--GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHH--H--HHHH--CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 3444555667888888887743 2 2222 356677888888899999999999999999988864
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.22 E-value=2e+02 Score=27.78 Aligned_cols=88 Identities=5% Similarity=0.072 Sum_probs=0.0
Q ss_pred cHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHH--HHHHHHHHHhhccC-chhHHHHHHHHHHHHHHhh-cccC
Q 046417 138 SKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQL--RKLLPRLGKAVRIE-GFKAKAAVLGVIGSVVRVG-GARS 213 (595)
Q Consensus 138 l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L--~~Ll~rL~klL~~~-~~kaK~alLsAIgSlA~a~-g~~~ 213 (595)
++-|..-| ...|+++|..|..-|+..+.+.+......+ .+++..|.++++.. +..+|.-++..|.+-+.+- +...
T Consensus 47 ~ral~krl-~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~ 125 (226)
T 3zyq_A 47 VNSIKKKV-NDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEPK 125 (226)
T ss_dssp HHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcc
Q ss_pred cCcHHhHHHHHHH
Q 046417 214 KGVLDWLVPCLVE 226 (595)
Q Consensus 214 ~~yl~~lmp~L~e 226 (595)
..++..+-..|..
T Consensus 126 l~~i~~~Y~~Lk~ 138 (226)
T 3zyq_A 126 YKVVQDTYQIMKV 138 (226)
T ss_dssp GHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
No 145
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=28.18 E-value=53 Score=35.85 Aligned_cols=56 Identities=13% Similarity=0.012 Sum_probs=45.1
Q ss_pred CChhHHHHHHHHHHHhhhhhcCCcch---hccHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 046417 110 PDSSVRSACVAATTAMSLNITKPSFS---VLSKPLIELILVEQDVNSQVGGAMCLAAAI 165 (595)
Q Consensus 110 ~ds~VR~Ac~~aLg~LA~~l~~~~~~---~~l~PLi~aLl~d~nk~VQ~~AA~cLaavi 165 (595)
.|+.+-..||.=+|.|+++......+ .-.+..+-.|+++.|+.|+--|-.|+.+++
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 47889999999999999998542211 146888888888999999999999988865
No 146
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=27.99 E-value=3e+02 Score=25.44 Aligned_cols=74 Identities=11% Similarity=0.025 Sum_probs=52.1
Q ss_pred HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHH------HHHHHHHHHHhccCC--c-hHHHHHHHHHHHHHhH
Q 046417 218 DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATE------YKRSCLAALETRRFD--K-VKIVRETMNRSLEMWK 288 (595)
Q Consensus 218 ~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~p------y~~~~I~~Le~crfD--K-VK~VRda~~~aL~~~K 288 (595)
...+..|...+.+.+=.+...|+..|-.+..-+|..|.. |+..+++++. -+++ + -..||+-+.+.|+.|.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~-~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVS-PKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHC-CCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhc-cccCCCCCCHHHHHHHHHHHHHHH
Confidence 344566777777777777888899999999988876553 2345555543 2221 1 2799999999999999
Q ss_pred hcCC
Q 046417 289 EVPG 292 (595)
Q Consensus 289 ~i~~ 292 (595)
.-..
T Consensus 128 ~~f~ 131 (171)
T 1juq_A 128 MALP 131 (171)
T ss_dssp HHCT
T ss_pred HHcC
Confidence 8664
No 147
>2zfc_A HIV-1 GP41; peptide, viral protein; 1.50A {Synthetic}
Probab=27.12 E-value=61 Score=24.31 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=14.4
Q ss_pred chhhhhhhhhhhHHHH
Q 046417 511 GMNSLETRVHGLEMAL 526 (595)
Q Consensus 511 ~m~~le~rv~gle~~~ 526 (595)
|+..|..||..+|+.+
T Consensus 33 Gikqlqarvla~eryl 48 (49)
T 2zfc_A 33 GVKQLQARVLALERYI 48 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHccchhhhhcccccc
Confidence 8999999999999864
No 148
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.84 E-value=21 Score=29.46 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=22.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhhhcCcccC
Q 046417 512 MNSLETRVHGLEMALDEISYDLALSNGRILN 542 (595)
Q Consensus 512 m~~le~rv~gle~~~d~is~dl~~s~gr~~~ 542 (595)
+..||.||..||..|.++.-+...+.|..|.
T Consensus 50 ~~~Le~rl~~le~~l~~~~~~~~~~~~~~p~ 80 (96)
T 1pyi_A 50 VFFLEDRLAVMMRVLKEYGVDPTKIRGNIPA 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCSSCSST
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccCCCCCC
Confidence 4568899999999888876655555555544
No 149
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=24.01 E-value=1.1e+02 Score=25.19 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=34.7
Q ss_pred HHHHhhHHHHHHHHHHhccccchhhhhhhhhhhHHHHHHHH
Q 046417 490 IENQQSSLFDLLQRFIGSSQSGMNSLETRVHGLEMALDEIS 530 (595)
Q Consensus 490 ie~qq~~l~~llq~fmg~s~~~m~~le~rv~gle~~~d~is 530 (595)
|--.=.++.+.|.+|.-+..+-+..|+.|+.-||+.|+=+=
T Consensus 25 in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLE 65 (75)
T 3p8c_E 25 ITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIE 65 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444677888999999999999999999999999998653
No 150
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=23.47 E-value=2.4e+02 Score=25.62 Aligned_cols=109 Identities=14% Similarity=0.190 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHhCCcCcHHHHHHhhhhcCCCCChHHHHHHHHHHHHHHHHccccchhhHH
Q 046417 18 DLKQRVITCLNKLADRDTLPVATAELESIARTLTQDSFSSFLNCLQTTDSSSKSPVRKQCVNLLTLLSRSHGDSLSPHLS 97 (595)
Q Consensus 18 ~lk~rvl~~L~KL~DrDT~r~A~~~LD~lA~~L~~~~lp~fL~~L~d~~ss~kp~vRKaaI~lLG~lAEg~gd~I~PhLp 97 (595)
-++.+.+.-.|--.|--|.-..+++|-.+..+.+.+.+.-++..|...+....+.+.--++++|-.|+.--.+...-.+-
T Consensus 10 ~~~~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r 89 (140)
T 1vdy_A 10 YWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQ 89 (140)
T ss_dssp HHHHHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHH
Confidence 44555555444422223777778888888876654446777777777776667888889999998887422222222222
Q ss_pred HHHHHHHhhccC----CC--------hhHHHHHHHHHHHhhh
Q 046417 98 KMISTVSCRLRD----PD--------SSVRSACVAATTAMSL 127 (595)
Q Consensus 98 kIL~~IvrrLkD----~d--------s~VR~Ac~~aLg~LA~ 127 (595)
+=+ ++++.|++ +| ..||.++-+.+..|..
T Consensus 90 ~~~-~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 90 RNS-VAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp HTT-HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred HhH-HHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhC
Confidence 222 24554442 12 3588888777665543
No 151
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=23.06 E-value=3.5e+02 Score=24.52 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred HhHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhHHhHHH------HHHHHHHHHHhccCCchHHHHHHHHHHHHHhHh
Q 046417 218 DWLVPCLVEFLC-CDDWATRKAAAEVLGKVAVFDKDLATE------YKRSCLAALETRRFDKVKIVRETMNRSLEMWKE 289 (595)
Q Consensus 218 ~~lmp~L~e~L~-~dDW~~RkaAaEaLgsIA~avge~f~p------y~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~ 289 (595)
..++..|...|. +.+..+...|+..|-.+..-+|..|.. |+..++--+-.-+.+.-..||+-+.+.|+.|..
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
No 152
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=22.63 E-value=4.9e+02 Score=24.58 Aligned_cols=72 Identities=13% Similarity=0.011 Sum_probs=52.7
Q ss_pred HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHH------HHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhcC
Q 046417 218 DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATE------YKRSCLAALETRRFDKVKIVRETMNRSLEMWKEVP 291 (595)
Q Consensus 218 ~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~p------y~~~~I~~Le~crfDKVK~VRda~~~aL~~~K~i~ 291 (595)
..++..|...|.+.+=.+..-|+..|-.+....|..|.. |+..++.++.. +.-..||+-+.+.++.|.+-.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~~~~Vk~kil~li~~W~~~f 117 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES---TPHENVRQKMLELVQTWAYAF 117 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHHHh
Confidence 455666777777777777788888899998888875533 34556666654 223689999999999999765
Q ss_pred C
Q 046417 292 G 292 (595)
Q Consensus 292 ~ 292 (595)
.
T Consensus 118 ~ 118 (220)
T 1dvp_A 118 R 118 (220)
T ss_dssp T
T ss_pred c
Confidence 3
No 153
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=21.63 E-value=4.4e+02 Score=23.65 Aligned_cols=74 Identities=14% Similarity=-0.109 Sum_probs=50.7
Q ss_pred HhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHHhHHHHH--HHHHHHHHhccCCc------hHHHHHHHHHHHHHhHh
Q 046417 218 DWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKDLATEYK--RSCLAALETRRFDK------VKIVRETMNRSLEMWKE 289 (595)
Q Consensus 218 ~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge~f~py~--~~~I~~Le~crfDK------VK~VRda~~~aL~~~K~ 289 (595)
...+..|...+.+.+=.+-..|+..|-++..-+|..|.... ..++.-|...-.+| -..||+-+.+.|+.|..
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34456666677777666777788888888888887664432 34444444332222 36899999999999997
Q ss_pred cC
Q 046417 290 VP 291 (595)
Q Consensus 290 i~ 291 (595)
-.
T Consensus 117 ~f 118 (148)
T 1mhq_A 117 WF 118 (148)
T ss_dssp HC
T ss_pred Hc
Confidence 65
No 154
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=21.46 E-value=54 Score=25.20 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=15.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHH
Q 046417 512 MNSLETRVHGLEMALDEISYDL 533 (595)
Q Consensus 512 m~~le~rv~gle~~~d~is~dl 533 (595)
+..||.||..||..|..+...|
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777765544
No 155
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=20.47 E-value=2.8e+02 Score=25.78 Aligned_cols=72 Identities=8% Similarity=0.017 Sum_probs=43.1
Q ss_pred CChhHHHHHHHHHHHhhhhhcCC---c---------chhccHHHHHHHhhcCChhHHHHHHHHHHHHHhcCCCchHHHHH
Q 046417 110 PDSSVRSACVAATTAMSLNITKP---S---------FSVLSKPLIELILVEQDVNSQVGGAMCLAAAIDAAPNPEVEQLR 177 (595)
Q Consensus 110 ~ds~VR~Ac~~aLg~LA~~l~~~---~---------~~~~l~PLi~aLl~d~nk~VQ~~AA~cLaaviE~a~d~~~~~L~ 177 (595)
++..||.|...++-.++.+.... + ......||+..+. .++..|....++|..+|-.. ..+.+.++
T Consensus 49 s~~eV~~av~~ail~~~~~~~~~~~~~~~~~~a~~~~i~~~~~ll~~~~--~~~~~q~~lL~ale~~~~~~-~~~~~~~~ 125 (182)
T 3jui_A 49 SLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYI--KRAADHLEALAAIEDFFLEH-EALGISMA 125 (182)
T ss_dssp CHHHHHHHHHHHHHHGGGGGCCSSCCHHHHHHHHHHHHHHHHHHHHHHC--CSHHHHHHHHHHHHHHHHHC-GGGGGGHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHhC-chHHHHHH
Confidence 55679999999987776443221 1 0124567777764 35667888888888887432 22233444
Q ss_pred HHHHHHH
Q 046417 178 KLLPRLG 184 (595)
Q Consensus 178 ~Ll~rL~ 184 (595)
.++..|+
T Consensus 126 ~il~~LY 132 (182)
T 3jui_A 126 KVLMAFY 132 (182)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444433
No 156
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=20.18 E-value=4.7e+02 Score=23.35 Aligned_cols=88 Identities=9% Similarity=0.131 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhhcccCcCcHHhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH-------hHHHH-HHHHHHHHHhc
Q 046417 197 AVLGVIGSVVRVGGARSKGVLDWLVPCLVEFLCCDDWATRKAAAEVLGKVAVFDKD-------LATEY-KRSCLAALETR 268 (595)
Q Consensus 197 alLsAIgSlA~a~g~~~~~yl~~lmp~L~e~L~~dDW~~RkaAaEaLgsIA~avge-------~f~py-~~~~I~~Le~c 268 (595)
..|..|..+|.- ...+...++..+...+..-.=.-|..++=.+-+|....+. .|.++ ...+.+.|...
T Consensus 24 ~~I~~LT~~a~~----~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~ 99 (145)
T 3d9j_A 24 AKMTQITKAAIK----AIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNL 99 (145)
T ss_dssp HHHHHHHHHHHH----TGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHH
Confidence 345555555531 3345677777777776543335678888888888888865 34443 34444445422
Q ss_pred cCCchHHHHHHHHHHHHHhHh
Q 046417 269 RFDKVKIVRETMNRSLEMWKE 289 (595)
Q Consensus 269 rfDKVK~VRda~~~aL~~~K~ 289 (595)
|.....+|..+.+-+.+|.+
T Consensus 100 -~~~~~~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 100 -YRCPGDDKSKIVRVLNLWQK 119 (145)
T ss_dssp -TSSCGGGHHHHHHHHHHHHH
T ss_pred -HhCCHHHHHHHHHHHHHhcC
Confidence 23348899999999999985
Done!