BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046419
(505 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 117 bits (292), Expect = 2e-26, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFS 91
L KGPWT ED + E V+K+G W + ++ R GK CR RW NHL P +KK +++
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 92 PEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
EE+R+I E H LGN+WA +A LPGRTDN +KN+WN+ +KR+
Sbjct: 64 EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 107
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 114 bits (286), Expect = 9e-26, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 31 QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTF 90
+L KGPWT ED + E+V+K+G W+ + ++ R GK CR RW NHL P +KK ++
Sbjct: 24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 82
Query: 91 SPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
+ EE+R+I + H +LGN+WA +A LPGRTDN +KN+WN+ ++R+
Sbjct: 83 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 113 bits (283), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 31 QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTF 90
+L KGPWT ED + + V+K+G W+ + ++ R GK CR RW NHL P +KK ++
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 59
Query: 91 SPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
+ EE+R+I + H +LGN+WA +A LPGRTDN IKN+WN+ ++R+
Sbjct: 60 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 113 bits (282), Expect = 3e-25, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFS 91
L KGPWT ED + + V+K+G W+ + ++ R GK CR RW NHL P +KK +++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 92 PEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
EE+R+I + H +LGN+WA +A LPGRTDN IKN+WN+ ++R+
Sbjct: 61 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 113 bits (282), Expect = 3e-25, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 31 QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTF 90
+L KGPWT ED + + V+K+G W+ + ++ R GK CR RW NHL P +KK ++
Sbjct: 55 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 113
Query: 91 SPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
+ EE+R+I + H +LGN+WA +A LPGRTDN IKN+WN+ ++R+
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 5/104 (4%)
Query: 34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLA--RCGKSCRLRWANHLRPNLKKGTFS 91
KGP+T AED ++ EYV+++G NW R T R K CR RW NHL P + K ++
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 92 PEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
PEE+ I + +LG+KW+ +A +PGRTDN IKN WN+ + +R
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSP 92
KK +T ED +L V +HG +W + T R + CR RW N+L P++ ++
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGS-DWKMIAA-TFPNRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 93 EEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNT 130
EE+ L+V+ + G +WA +A PGRTD IKN W T
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 66.6 bits (161), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPE 93
K +T ED L + V ++G +W + + + R + CR RW N++ P L+ +SPE
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 94 EERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQ 138
E+ L+ + +A+ G KW +++ L R+DN I+N W + R +
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 66.6 bits (161), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 41/51 (80%)
Query: 85 LKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
+KK +++ EE+R+I + H +LGN+WA +A LPGRTDN IKN+WN+ ++R+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 65.5 bits (158), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 41/51 (80%)
Query: 85 LKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
+KK +++ EE+R++ + H +LGN+WA +A LPGRTDN IKN+WN+ ++R+
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRP 83
L KGPWT ED + E V+K+G W+ + ++ R GK CR RW NHL P
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 85 LKKGTFSPEEERLIVELHAQLGNK-WARMAAQLPGRTDNEIKNYWNTRV 132
L KG ++ EE++ ++EL + G K W+ +A L GR + + W+ +
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRP 83
L KGPWT ED L + V+K+G W+ + ++ R GK CR RW NHL P
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51
Score = 28.9 bits (63), Expect = 7.1, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 85 LKKGTFSPEEERLIVELHAQLGNK-WARMAAQLPGRTDNEIKNYWNTRV 132
L KG ++ EE++ +++L + G K W+ +A L GR + + W+ +
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRP 83
L KGPWT ED + + V+K+G W+ + ++ R GK CR RW NHL P
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 85 LKKGTFSPEEERLIVELHAQLGNK-WARMAAQLPGRTDNEIKNYWNTRV 132
L KG ++ EE++ +++L + G K W+ +A L GR + + W+ +
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 35.4 bits (80), Expect = 0.074, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 37 WTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFS 91
W ED IL V K+G+ W+ + + + K C+ RW L P++KK +S
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIA-SLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRN 63
KK WT E + V+K+GEGNW A+ +N
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 31
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRN 63
KK WT E + V+K+GEGNW A+ +N
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 40
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRN 63
KK WT E + V+K+GEGNW A+ +N
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 40
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRN 63
KK WT E + V+K+GEGNW A+ +N
Sbjct: 9 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 39
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRN 63
KK WT E + V+K+GEGNW A+ +N
Sbjct: 13 KKQKWTVEESEWVKAGVQKYGEGNWAAISKN 43
>pdb|1W0T|A Chain A, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0T|B Chain B, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna
Length = 53
Score = 32.0 bits (71), Expect = 0.94, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAV 60
K+ W ED L VRK+GEGNW+ +
Sbjct: 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 28
>pdb|1BA5|A Chain A, Dna-Binding Domain Of Human Telomeric Protein, Htrf1,
Nmr, 18 Structures
Length = 53
Score = 31.6 bits (70), Expect = 0.96, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAV 60
K+ W ED L VRK+GEGNW+ +
Sbjct: 2 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 29
>pdb|1IV6|A Chain A, Solution Structure Of The Dna Complex Of Human Trf1
Length = 70
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAV 60
K+ W ED L VRK+GEGNW+ +
Sbjct: 10 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 37
>pdb|2LLK|A Chain A, Solution Nmr Structure Of The N-Terminal Myb-Like 1 Domain
Of The Human Cyclin-D-Binding Transcription Factor 1
(Hdmp1), Northeast Structural Genomics Consortium (Nesg)
Target Id Hr8011a
Length = 73
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 88 GTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKN 126
G ++PEE + EL + GN WA + A L GR+ + +K+
Sbjct: 24 GKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKD 61
>pdb|1ITY|A Chain A, Solution Structure Of The Dna Binding Domain Of Human
Trf1
Length = 69
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAV 60
K+ W ED L VRK+GEGNW+ +
Sbjct: 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 36
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 23 GSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCR 74
GS G G W A E+ +L + G GNW + G AR + CR
Sbjct: 1 GSSGSSGFDEN---WGADEELLLIDACETLGLGNWADIADYVGNARTKEECR 49
>pdb|1CE2|A Chain A, Structure Of Diferric Buffalo Lactoferrin At 2.5a
Resolution
Length = 689
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 7/129 (5%)
Query: 365 KLLSHPSFSFGNQNSSA--IYRNPDEKECILTSTGSVFNLKPELPSSQSLSQNVNAEILR 422
KLLS FG S + ++ +P + +L ++ L+ +PS + + + L
Sbjct: 269 KLLSKAQEKFGKNKSGSFQLFGSPPGQRDLLFKDSALGFLR--IPSKVDSALYLGSRYLT 326
Query: 423 S-KPKEETGGQINMHEDISKLLNVIPSMQ--VPEWYNDSGEASNCQSSVVTDDNLGLELQ 479
+ K ET ++ V P Q +W SG+ C ++ TDD + L L+
Sbjct: 327 ALKNLRETAEEVQARRARVVWCAVGPEEQKKCQQWSQQSGQIVTCATASTTDDCIALVLK 386
Query: 480 QLASILHVD 488
A L +D
Sbjct: 387 GEADALSLD 395
>pdb|1BIY|A Chain A, Structure Of Diferric Buffalo Lactoferrin
Length = 689
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 7/129 (5%)
Query: 365 KLLSHPSFSFGNQNSSA--IYRNPDEKECILTSTGSVFNLKPELPSSQSLSQNVNAEILR 422
KLLS FG S + ++ +P + +L ++ L+ +PS + + + L
Sbjct: 269 KLLSKAQEKFGKNKSGSFQLFGSPPGQRDLLFKDSALGFLR--IPSKVDSALYLGSRYLT 326
Query: 423 S-KPKEETGGQINMHEDISKLLNVIPSMQ--VPEWYNDSGEASNCQSSVVTDDNLGLELQ 479
+ K ET ++ V P Q +W SG+ C ++ TDD + L L+
Sbjct: 327 ALKNLRETAEEVQARRARVVWCAVGPEEQKKCQQWSQQSGQIVTCATASTTDDCIALVLK 386
Query: 480 QLASILHVD 488
A L +D
Sbjct: 387 GEADALSLD 395
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRP 83
L K WT ED L + V ++G +W + N R C+ RW L P
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVLNP 51
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRP 83
L K WT ED L + V ++G +W + N R C+ RW L P
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVLNP 51
>pdb|1BLF|A Chain A, Structure Of Diferric Bovine Lactoferrin At 2.8 Angstroms
Resolution
Length = 689
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 365 KLLSHPSFSFGNQNSSA--IYRNPDEKECILTSTGSVFNLKPELPSSQSLSQNVNAEILR 422
KLLS FG S + ++ +P + +L ++ L+ +PS + + + L
Sbjct: 269 KLLSKAQEKFGKNKSRSFQLFGSPPGQRDLLFKDSALGFLR--IPSKVDSALYLGSRYLT 326
Query: 423 S-KPKEETGGQINMHEDISKLLNVIPSMQ--VPEWYNDSGEASNCQSSVVTDDNLGLELQ 479
+ K ET ++ V P Q +W SG+ C ++ TDD + L L+
Sbjct: 327 TLKNLRETAEEVKARYTRVVWCAVGPEEQKKCQQWSQQSGQNVTCATASTTDDCIVLVLK 386
Query: 480 QLASILHVD 488
A L++D
Sbjct: 387 GEADALNLD 395
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,366,079
Number of Sequences: 62578
Number of extensions: 402702
Number of successful extensions: 784
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 46
length of query: 505
length of database: 14,973,337
effective HSP length: 103
effective length of query: 402
effective length of database: 8,527,803
effective search space: 3428176806
effective search space used: 3428176806
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)