Query 046419
Match_columns 505
No_of_seqs 187 out of 1442
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 20:59:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.9E-31 6.4E-36 229.7 9.7 104 31-135 1-104 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 3.3E-31 1.1E-35 229.7 8.8 104 34-138 1-104 (107)
3 3zqc_A MYB3; transcription-DNA 100.0 7.8E-31 2.7E-35 235.0 10.4 107 34-141 2-108 (131)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 8.1E-31 2.8E-35 233.6 8.8 123 12-135 2-127 (128)
5 3osg_A MYB21; transcription-DN 100.0 1.3E-30 4.4E-35 232.3 9.7 105 29-135 6-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 4.3E-30 1.5E-34 236.5 6.9 133 2-135 23-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 7.9E-29 2.7E-33 228.1 3.5 124 31-155 3-127 (159)
8 2dim_A Cell division cycle 5-l 99.8 1.5E-20 5.2E-25 151.4 2.1 66 29-95 4-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 3.4E-20 1.2E-24 165.0 3.7 96 60-156 1-97 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 1.3E-17 4.3E-22 162.9 6.6 106 29-135 3-200 (246)
11 2juh_A Telomere binding protei 99.6 5.3E-17 1.8E-21 144.5 2.7 84 27-111 10-103 (121)
12 2llk_A Cyclin-D-binding MYB-li 99.6 2.7E-16 9.2E-21 128.6 5.7 60 73-133 9-68 (73)
13 2roh_A RTBP1, telomere binding 99.6 3E-16 1E-20 139.8 5.5 80 28-108 25-114 (122)
14 2d9a_A B-MYB, MYB-related prot 99.6 1.9E-16 6.6E-21 123.7 3.4 58 28-86 2-59 (60)
15 1gvd_A MYB proto-oncogene prot 99.6 2E-16 6.7E-21 120.3 2.8 52 32-84 1-52 (52)
16 2cu7_A KIAA1915 protein; nucle 99.6 2.8E-15 9.7E-20 121.4 8.2 60 81-140 3-62 (72)
17 1guu_A C-MYB, MYB proto-oncoge 99.6 2.8E-16 9.5E-21 119.3 1.9 52 32-84 1-52 (52)
18 2din_A Cell division cycle 5-l 99.6 4.1E-15 1.4E-19 118.3 6.6 60 80-140 2-61 (66)
19 2dim_A Cell division cycle 5-l 99.6 5.8E-15 2E-19 118.7 7.4 66 82-147 4-70 (70)
20 1ity_A TRF1; helix-turn-helix, 99.6 9.2E-16 3.1E-20 123.2 2.6 64 28-91 4-68 (69)
21 1x41_A Transcriptional adaptor 99.5 3.3E-15 1.1E-19 117.1 2.7 55 29-84 3-57 (60)
22 2d9a_A B-MYB, MYB-related prot 99.5 1.7E-14 6E-19 112.5 6.4 55 82-136 3-58 (60)
23 3sjm_A Telomeric repeat-bindin 99.5 2.8E-15 9.7E-20 119.4 1.6 56 31-86 8-64 (64)
24 1guu_A C-MYB, MYB proto-oncoge 99.5 3.9E-14 1.3E-18 107.4 6.5 50 85-134 1-51 (52)
25 1gvd_A MYB proto-oncogene prot 99.5 6.7E-14 2.3E-18 106.2 6.4 50 85-134 1-51 (52)
26 2elk_A SPCC24B10.08C protein; 99.5 1.4E-14 4.8E-19 112.9 2.5 52 30-81 5-56 (58)
27 2yum_A ZZZ3 protein, zinc fing 99.4 7.5E-14 2.6E-18 113.5 6.2 60 82-141 3-68 (75)
28 1w0t_A Telomeric repeat bindin 99.4 1.4E-14 4.9E-19 110.6 1.7 50 33-82 1-51 (53)
29 2yum_A ZZZ3 protein, zinc fing 99.4 1E-14 3.5E-19 118.7 0.7 61 28-89 2-67 (75)
30 1ity_A TRF1; helix-turn-helix, 99.4 1.5E-13 5.1E-18 110.3 7.4 59 81-139 4-65 (69)
31 1w0t_A Telomeric repeat bindin 99.4 1.4E-13 4.8E-18 105.0 6.7 49 86-134 1-52 (53)
32 1x41_A Transcriptional adaptor 99.4 1.4E-13 4.9E-18 107.7 6.5 52 83-134 4-56 (60)
33 2din_A Cell division cycle 5-l 99.4 9.2E-15 3.1E-19 116.3 -1.2 57 29-88 4-60 (66)
34 3zqc_A MYB3; transcription-DNA 99.4 1.4E-14 4.6E-19 129.6 -1.1 108 3-116 20-130 (131)
35 2cu7_A KIAA1915 protein; nucle 99.4 4E-14 1.4E-18 114.6 0.8 58 28-87 3-60 (72)
36 3sjm_A Telomeric repeat-bindin 99.4 5.8E-13 2E-17 106.0 6.8 51 85-135 9-62 (64)
37 2elk_A SPCC24B10.08C protein; 99.4 8.7E-13 3E-17 102.8 6.7 49 84-132 6-56 (58)
38 2yus_A SWI/SNF-related matrix- 99.3 6.5E-13 2.2E-17 110.0 4.0 52 28-81 12-63 (79)
39 2ltp_A Nuclear receptor corepr 99.0 2E-13 6.9E-18 115.1 0.0 58 80-137 9-66 (89)
40 3osg_A MYB21; transcription-DN 99.3 9.6E-13 3.3E-17 116.9 4.2 80 82-161 6-85 (126)
41 2aje_A Telomere repeat-binding 99.3 8.8E-13 3E-17 114.8 3.7 79 28-106 7-94 (105)
42 2ckx_A NGTRF1, telomere bindin 99.3 1.2E-12 4.2E-17 109.4 3.7 69 35-104 1-79 (83)
43 1gv2_A C-MYB, MYB proto-oncoge 99.3 1.5E-12 5E-17 111.7 3.5 73 84-156 1-74 (105)
44 2llk_A Cyclin-D-binding MYB-li 99.3 1.1E-12 3.9E-17 107.2 2.6 56 27-86 16-71 (73)
45 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1.3E-12 4.6E-17 106.7 2.3 57 25-82 9-68 (73)
46 2cqr_A RSGI RUH-043, DNAJ homo 99.2 9.4E-12 3.2E-16 101.7 6.0 51 84-134 15-69 (73)
47 2k9n_A MYB24; R2R3 domain, DNA 99.2 4.4E-12 1.5E-16 109.6 3.4 67 87-153 1-68 (107)
48 2yus_A SWI/SNF-related matrix- 99.2 1.2E-11 4.1E-16 102.4 5.0 48 84-131 15-62 (79)
49 2ltp_A Nuclear receptor corepr 98.8 1.8E-12 6.2E-17 109.3 0.0 54 28-83 10-63 (89)
50 1x58_A Hypothetical protein 49 99.1 1E-10 3.4E-15 92.7 6.5 51 85-135 6-59 (62)
51 2juh_A Telomere binding protei 99.1 3E-11 1E-15 107.5 4.0 54 81-134 11-69 (121)
52 2ckx_A NGTRF1, telomere bindin 99.1 1.2E-10 4.2E-15 97.3 7.0 49 88-136 1-54 (83)
53 2aje_A Telomere repeat-binding 99.1 9.8E-11 3.4E-15 101.9 6.4 53 83-135 9-66 (105)
54 2roh_A RTBP1, telomere binding 99.1 9.8E-11 3.4E-15 104.4 5.1 51 84-134 28-83 (122)
55 2cjj_A Radialis; plant develop 99.0 2.9E-10 9.8E-15 97.0 6.7 50 86-135 7-60 (93)
56 1ign_A Protein (RAP1); RAP1,ye 99.0 1.9E-10 6.7E-15 112.5 4.9 54 84-137 5-64 (246)
57 2cjj_A Radialis; plant develop 98.9 2.6E-10 9.1E-15 97.2 0.5 48 33-81 7-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 98.8 6.6E-09 2.3E-13 81.6 6.4 48 86-133 11-58 (61)
59 2eqr_A N-COR1, N-COR, nuclear 98.8 2.4E-09 8.2E-14 84.1 3.0 51 29-81 7-57 (61)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.7 1.8E-08 6E-13 82.1 5.9 50 84-134 5-58 (72)
61 3hm5_A DNA methyltransferase 1 98.7 1.9E-08 6.6E-13 85.7 6.4 66 70-139 17-87 (93)
62 2xag_B REST corepressor 1; ami 98.7 1.3E-08 4.5E-13 108.4 5.6 47 88-134 381-427 (482)
63 1x58_A Hypothetical protein 49 98.6 6.7E-09 2.3E-13 82.3 1.7 48 33-82 7-57 (62)
64 2iw5_B Protein corest, REST co 98.6 3.3E-08 1.1E-12 96.1 6.5 51 85-135 131-181 (235)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.4 3.9E-08 1.3E-12 80.0 1.1 50 31-82 5-57 (72)
66 1wgx_A KIAA1903 protein; MYB D 98.4 5.3E-07 1.8E-11 73.7 6.5 50 86-135 7-60 (73)
67 1wgx_A KIAA1903 protein; MYB D 98.3 1E-07 3.5E-12 77.9 1.2 49 34-83 8-59 (73)
68 2iw5_B Protein corest, REST co 98.3 2.2E-07 7.6E-12 90.3 2.5 51 30-82 129-179 (235)
69 1fex_A TRF2-interacting telome 98.2 3.8E-07 1.3E-11 71.5 1.0 48 34-82 2-58 (59)
70 1fex_A TRF2-interacting telome 98.1 2.1E-06 7.2E-11 67.2 4.9 47 87-133 2-58 (59)
71 2yqk_A Arginine-glutamic acid 98.0 1.8E-05 6.1E-10 62.5 7.1 51 83-133 5-56 (63)
72 1ofc_X ISWI protein; nuclear p 97.9 3E-05 1E-09 78.6 9.5 101 36-137 112-278 (304)
73 1ug2_A 2610100B20RIK gene prod 97.9 1.4E-05 4.7E-10 67.7 5.8 49 89-137 35-86 (95)
74 4eef_G F-HB80.4, designed hema 97.9 1.8E-06 6.3E-11 70.4 0.4 44 34-78 20-66 (74)
75 2yqk_A Arginine-glutamic acid 97.8 1E-05 3.5E-10 63.9 3.0 49 29-79 4-53 (63)
76 4eef_G F-HB80.4, designed hema 97.8 3.7E-06 1.3E-10 68.7 0.1 43 87-129 20-66 (74)
77 2lr8_A CAsp8-associated protei 96.9 5.8E-06 2E-10 66.5 0.0 46 89-135 16-64 (70)
78 4iej_A DNA methyltransferase 1 97.6 0.00015 5.2E-09 61.7 7.6 61 76-140 23-88 (93)
79 2xag_B REST corepressor 1; ami 97.5 3.2E-05 1.1E-09 82.7 2.7 50 30-81 376-425 (482)
80 2crg_A Metastasis associated p 97.5 0.00024 8.1E-09 57.2 6.6 44 87-130 8-52 (70)
81 4a69_C Nuclear receptor corepr 97.4 0.00021 7.1E-09 60.8 6.2 46 87-132 43-88 (94)
82 2crg_A Metastasis associated p 97.2 0.00013 4.3E-09 58.8 1.8 44 33-78 7-51 (70)
83 3hm5_A DNA methyltransferase 1 97.1 0.00011 3.9E-09 62.5 1.3 49 32-81 28-80 (93)
84 4a69_C Nuclear receptor corepr 97.1 0.00016 5.3E-09 61.5 1.9 43 34-78 43-85 (94)
85 2ebi_A DNA binding protein GT- 97.0 6.3E-05 2.1E-09 62.2 -1.4 50 32-81 2-63 (86)
86 4b4c_A Chromodomain-helicase-D 96.8 0.0017 5.7E-08 61.4 6.2 47 89-135 136-197 (211)
87 2ebi_A DNA binding protein GT- 96.8 0.0012 4.1E-08 54.5 4.5 50 87-136 4-67 (86)
88 1ug2_A 2610100B20RIK gene prod 96.7 0.0017 5.8E-08 55.0 4.8 47 33-80 32-80 (95)
89 2y9y_A Imitation switch protei 96.3 0.016 5.4E-07 60.3 10.0 103 36-138 125-295 (374)
90 2lr8_A CAsp8-associated protei 94.9 0.0013 4.4E-08 53.0 0.0 46 35-82 15-62 (70)
91 1irz_A ARR10-B; helix-turn-hel 95.2 0.058 2E-06 42.9 7.1 50 86-135 6-60 (64)
92 4iej_A DNA methyltransferase 1 94.3 0.013 4.6E-07 49.8 1.4 49 32-81 28-80 (93)
93 1ofc_X ISWI protein; nuclear p 92.0 0.23 7.7E-06 50.4 6.5 47 88-134 111-158 (304)
94 4b4c_A Chromodomain-helicase-D 89.8 0.37 1.3E-05 45.2 5.4 49 86-134 6-59 (211)
95 1irz_A ARR10-B; helix-turn-hel 89.1 0.16 5.4E-06 40.4 1.9 46 31-76 4-52 (64)
96 2xb0_X Chromo domain-containin 88.7 0.22 7.5E-06 49.7 3.1 26 36-61 170-195 (270)
97 1u78_A TC3 transposase, transp 81.5 5.5 0.00019 33.6 8.1 90 35-129 5-101 (141)
98 2k27_A Paired box protein PAX- 76.1 17 0.00058 31.8 9.9 90 35-129 24-133 (159)
99 2xb0_X Chromo domain-containin 74.3 6 0.0002 39.4 7.0 49 87-135 3-56 (270)
100 2jvw_A Uncharacterized protein 61.9 13 0.00045 31.0 5.4 23 95-119 18-40 (88)
101 2o8x_A Probable RNA polymerase 60.2 13 0.00045 27.5 4.9 45 90-136 16-60 (70)
102 3cz6_A DNA-binding protein RAP 60.0 5.4 0.00019 37.0 3.1 17 83-99 110-126 (168)
103 2rq5_A Protein jumonji; develo 58.9 2.9 9.9E-05 36.8 1.0 57 44-103 46-113 (121)
104 2li6_A SWI/SNF chromatin-remod 55.2 9.1 0.00031 33.0 3.6 38 98-135 54-99 (116)
105 1ku3_A Sigma factor SIGA; heli 53.7 16 0.00055 27.9 4.5 45 90-136 11-59 (73)
106 2lm1_A Lysine-specific demethy 53.5 20 0.00069 30.1 5.4 38 98-135 49-98 (107)
107 2y9y_A Imitation switch protei 52.9 22 0.00074 37.0 6.5 48 88-136 124-173 (374)
108 2jrz_A Histone demethylase jar 52.4 18 0.00063 31.1 5.1 39 97-135 44-94 (117)
109 2p7v_B Sigma-70, RNA polymeras 49.7 17 0.00059 27.3 4.0 31 105-136 24-54 (68)
110 2cxy_A BAF250B subunit, HBAF25 49.4 22 0.00076 30.9 5.2 39 98-136 56-106 (125)
111 2eqy_A RBP2 like, jumonji, at 47.8 24 0.00084 30.6 5.2 38 98-135 47-96 (122)
112 1k78_A Paired box protein PAX5 46.9 48 0.0016 28.4 7.0 79 34-116 30-118 (149)
113 3hug_A RNA polymerase sigma fa 46.7 29 0.00099 27.7 5.1 41 94-135 41-81 (92)
114 2li6_A SWI/SNF chromatin-remod 46.2 3.9 0.00013 35.3 -0.2 39 44-83 53-98 (116)
115 2rq5_A Protein jumonji; develo 46.1 80 0.0027 27.5 8.2 39 98-136 47-98 (121)
116 1kkx_A Transcription regulator 46.0 13 0.00044 32.6 3.1 40 98-137 53-100 (123)
117 1ig6_A MRF-2, modulator recogn 41.8 6.3 0.00021 33.4 0.4 40 44-83 37-87 (107)
118 3i4p_A Transcriptional regulat 41.5 23 0.0008 31.3 4.2 45 93-138 3-48 (162)
119 3cz6_A DNA-binding protein RAP 40.9 17 0.00058 33.8 3.1 24 31-54 111-142 (168)
120 1hlv_A CENP-B, major centromer 40.6 13 0.00045 31.3 2.3 94 33-134 4-110 (131)
121 2kk0_A AT-rich interactive dom 40.2 36 0.0012 30.4 5.2 39 98-136 69-120 (145)
122 1c20_A DEAD ringer protein; DN 38.5 43 0.0015 29.1 5.3 40 97-136 56-108 (128)
123 2jxj_A Histone demethylase jar 38.2 17 0.0006 29.9 2.6 37 98-134 41-89 (96)
124 1x3u_A Transcriptional regulat 38.0 57 0.0019 24.7 5.4 44 90-136 17-60 (79)
125 1k78_A Paired box protein PAX5 37.7 76 0.0026 27.1 6.8 43 87-131 30-72 (149)
126 2jrz_A Histone demethylase jar 37.6 8.3 0.00028 33.3 0.5 39 44-82 44-92 (117)
127 3ulq_B Transcriptional regulat 37.0 52 0.0018 26.6 5.3 47 87-136 27-73 (90)
128 3c57_A Two component transcrip 36.7 61 0.0021 26.1 5.7 47 89-138 27-73 (95)
129 3e7l_A Transcriptional regulat 36.4 50 0.0017 24.8 4.7 36 92-128 18-53 (63)
130 1c20_A DEAD ringer protein; DN 35.0 8.9 0.0003 33.5 0.3 40 44-83 56-106 (128)
131 2jxj_A Histone demethylase jar 34.9 10 0.00035 31.3 0.6 39 44-82 40-88 (96)
132 1or7_A Sigma-24, RNA polymeras 34.6 57 0.0019 28.5 5.6 30 106-136 156-185 (194)
133 2dbb_A Putative HTH-type trans 34.2 69 0.0024 27.5 6.0 43 93-136 9-52 (151)
134 2cxy_A BAF250B subunit, HBAF25 34.1 9.2 0.00031 33.4 0.2 39 44-82 55-103 (125)
135 1je8_A Nitrate/nitrite respons 33.5 54 0.0018 25.7 4.7 45 89-136 21-65 (82)
136 1ntc_A Protein (nitrogen regul 33.4 58 0.002 26.3 5.0 37 92-129 50-86 (91)
137 1fse_A GERE; helix-turn-helix 33.3 58 0.002 24.1 4.7 46 88-136 10-55 (74)
138 2e1c_A Putative HTH-type trans 32.6 54 0.0019 29.5 5.1 45 92-137 26-71 (171)
139 1tty_A Sigma-A, RNA polymerase 32.5 52 0.0018 26.0 4.5 31 105-136 37-67 (87)
140 1tc3_C Protein (TC3 transposas 32.2 1E+02 0.0036 20.2 5.5 38 89-128 5-42 (51)
141 1ig6_A MRF-2, modulator recogn 31.8 23 0.00078 29.8 2.3 38 98-135 38-88 (107)
142 2eqy_A RBP2 like, jumonji, at 31.3 12 0.00042 32.5 0.5 38 44-81 46-93 (122)
143 2lm1_A Lysine-specific demethy 30.3 10 0.00036 31.9 -0.1 38 44-81 48-95 (107)
144 2jpc_A SSRB; DNA binding prote 30.2 74 0.0025 22.8 4.7 40 95-136 3-42 (61)
145 2yqf_A Ankyrin-1; death domain 30.2 73 0.0025 26.8 5.2 35 91-126 14-48 (111)
146 2kk0_A AT-rich interactive dom 28.4 17 0.00057 32.6 0.9 40 44-83 68-118 (145)
147 2cyy_A Putative HTH-type trans 27.9 80 0.0027 27.2 5.3 44 93-137 7-51 (151)
148 1rp3_A RNA polymerase sigma fa 27.1 84 0.0029 28.2 5.5 30 105-135 202-231 (239)
149 1xsv_A Hypothetical UPF0122 pr 26.9 1.1E+02 0.0039 25.5 5.9 40 95-135 30-69 (113)
150 3mzy_A RNA polymerase sigma-H 26.1 76 0.0026 26.5 4.7 30 105-135 123-152 (164)
151 1umq_A Photosynthetic apparatu 25.0 69 0.0024 25.9 4.0 36 91-127 39-74 (81)
152 2o71_A Death domain-containing 25.0 79 0.0027 27.2 4.6 27 97-124 26-52 (115)
153 3e7l_A Transcriptional regulat 25.0 27 0.00091 26.3 1.4 30 39-69 18-47 (63)
154 2q1z_A RPOE, ECF SIGE; ECF sig 24.9 38 0.0013 29.5 2.6 31 105-136 150-180 (184)
155 2lfw_A PHYR sigma-like domain; 24.8 47 0.0016 28.8 3.2 41 95-136 98-138 (157)
156 2rnj_A Response regulator prot 24.6 73 0.0025 25.2 4.0 45 89-136 29-73 (91)
157 1p4w_A RCSB; solution structur 24.3 1.1E+02 0.0038 25.2 5.2 47 87-136 32-78 (99)
158 2of5_H Leucine-rich repeat and 23.0 75 0.0026 27.1 4.0 29 95-124 13-41 (118)
159 2cg4_A Regulatory protein ASNC 22.7 1.1E+02 0.0039 26.2 5.3 43 93-136 8-51 (152)
160 2of5_A Death domain-containing 22.7 76 0.0026 27.2 4.0 34 87-124 19-52 (114)
161 1qbj_A Protein (double-strande 21.6 1.5E+02 0.005 23.8 5.3 44 91-135 8-55 (81)
162 2p5v_A Transcriptional regulat 21.5 1.2E+02 0.004 26.5 5.1 43 93-136 10-53 (162)
163 2dn0_A Zinc fingers and homeob 21.2 2.8E+02 0.0097 21.3 6.9 54 81-135 6-63 (76)
164 3k6g_A Telomeric repeat-bindin 20.6 38 0.0013 29.2 1.6 70 42-116 14-93 (111)
165 1iuf_A Centromere ABP1 protein 20.5 88 0.003 27.2 4.0 74 31-104 6-95 (144)
166 1wxp_A THO complex subunit 1; 20.4 1.1E+02 0.0036 25.8 4.4 30 95-125 18-47 (110)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.97 E-value=1.9e-31 Score=229.72 Aligned_cols=104 Identities=47% Similarity=0.949 Sum_probs=99.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHH
Q 046419 31 QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWA 110 (505)
Q Consensus 31 ~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~kWs 110 (505)
+++||+||+|||++|+++|++||..+|.+||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||.+|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999989999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419 111 RMAAQLPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 111 kIAk~LpgRT~~qcKnRW~~llkk~ 135 (505)
.||+.|+|||+++|++||+.+++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999998875
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=3.3e-31 Score=229.74 Aligned_cols=104 Identities=32% Similarity=0.612 Sum_probs=100.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHH
Q 046419 34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMA 113 (505)
Q Consensus 34 KG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIA 113 (505)
||+||+|||++|+++|.+||.++|.+||+.|+ +|+++|||+||.++|+|.+++++||+|||++|+++|.+||.+|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHhhhhhhc
Q 046419 114 AQLPGRTDNEIKNYWNTRVKRRHRQ 138 (505)
Q Consensus 114 k~LpgRT~~qcKnRW~~llkk~~r~ 138 (505)
+.|+|||+++||+||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999887654
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=7.8e-31 Score=234.97 Aligned_cols=107 Identities=42% Similarity=0.798 Sum_probs=103.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHH
Q 046419 34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMA 113 (505)
Q Consensus 34 KG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIA 113 (505)
||+||+|||++|+++|.+||.++|.+||+.|+ +|+++|||+||.++|+|.+++++||+|||++|+++|.+||.+|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHhhhhhhcCCC
Q 046419 114 AQLPGRTDNEIKNYWNTRVKRRHRQGLP 141 (505)
Q Consensus 114 k~LpgRT~~qcKnRW~~llkk~~r~~~~ 141 (505)
+.|+|||+++|++||+.++++++..+.+
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~ 108 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSN 108 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999998876653
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=8.1e-31 Score=233.60 Aligned_cols=123 Identities=41% Similarity=0.764 Sum_probs=102.5
Q ss_pred cccCCCCCCCCC---CCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCC
Q 046419 12 ESGVGGLNVSDG---SGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKG 88 (505)
Q Consensus 12 ~s~~gg~~~~~~---s~~~~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg 88 (505)
+..++|+....+ +.....+.+++|+||+|||++|+++|++||.++|.+||+.|+ +|+++||++||.++|+|.++++
T Consensus 2 a~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~ 80 (128)
T 1h8a_C 2 EAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKT 80 (128)
T ss_dssp --------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCS
T ss_pred ccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccc
Confidence 344455554443 333457789999999999999999999999889999999998 9999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419 89 TFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 89 ~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~ 135 (505)
+||+|||++|+++|++||.+|++||+.|+|||+++||+||+.+++++
T Consensus 81 ~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 81 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp CCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred cCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998875
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.96 E-value=1.3e-30 Score=232.28 Aligned_cols=105 Identities=34% Similarity=0.628 Sum_probs=101.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 046419 29 GVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNK 108 (505)
Q Consensus 29 ~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~k 108 (505)
+..++||+||+|||++|+++|++||. +|.+||+.|+ +|+++|||+||.++|+|.+++++||+|||++|+++|++||.+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~ 83 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ 83 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 56789999999999999999999999 9999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419 109 WARMAAQLPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 109 WskIAk~LpgRT~~qcKnRW~~llkk~ 135 (505)
|++||+.|+|||+.+||+||+.++++.
T Consensus 84 W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 84 WAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999998875
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=4.3e-30 Score=236.52 Aligned_cols=133 Identities=38% Similarity=0.704 Sum_probs=104.6
Q ss_pred cccCCCcceecccCCCCCCCCCCCC---CCCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccc
Q 046419 2 LLGNSNGEQLESGVGGLNVSDGSGG---EGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWA 78 (505)
Q Consensus 2 ~~g~~~~~~~~s~~gg~~~~~~s~~---~~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~ 78 (505)
.+|..+|..++..++|+....+... .-.+.+++|+||+|||++|+++|++||..+|.+||+.|+ +|+++||++||.
T Consensus 23 ~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~ 101 (159)
T 1h89_C 23 QNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWH 101 (159)
T ss_dssp --------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHH
T ss_pred HhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHH
Confidence 3677899999999988765544322 346688999999999999999999999878999999998 999999999999
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419 79 NHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 79 n~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~ 135 (505)
++|+|.+++++||+|||++|+++|.+||.+|++||+.|+|||+++||+||+.+++++
T Consensus 102 ~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 102 NHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999998875
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=7.9e-29 Score=228.08 Aligned_cols=124 Identities=24% Similarity=0.533 Sum_probs=75.5
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-CH
Q 046419 31 QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGN-KW 109 (505)
Q Consensus 31 ~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~-kW 109 (505)
+++||+||+|||++|+++|++||.++|.+||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999996 69
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCCCCCCCCCchhhhhh
Q 046419 110 ARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQHQH 155 (505)
Q Consensus 110 skIAk~LpgRT~~qcKnRW~~llkk~~r~~~~~~~~e~q~~~~~~~ 155 (505)
..||+.|+|||+.||++||..++.+.++++.|+..++......+..
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~ 127 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR 127 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999988888877766555444433
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-20 Score=151.41 Aligned_cols=66 Identities=32% Similarity=0.607 Sum_probs=63.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHH
Q 046419 29 GVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEE 95 (505)
Q Consensus 29 ~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED 95 (505)
+..+++|+||+|||++|+++|++||..+|.+||+.|+ +|+++|||+||.++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 5688999999999999999999999779999999999 99999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.78 E-value=3.4e-20 Score=164.98 Aligned_cols=96 Identities=21% Similarity=0.466 Sum_probs=66.6
Q ss_pred hccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhc
Q 046419 60 VQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKRRHRQ 138 (505)
Q Consensus 60 IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk~~r~ 138 (505)
||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|++||. +|.+||+.|+||++.||++||..++.+.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788898 99999999999999999999999999999999999999996 6999999999999999999999999999888
Q ss_pred CCCCCCCCCCchhhhhhh
Q 046419 139 GLPLYPPEIQPQHQHQHQ 156 (505)
Q Consensus 139 ~~~~~~~e~q~~~~~~~~ 156 (505)
+.|+.+++......+...
T Consensus 80 ~~WT~eEd~~L~~~~~~~ 97 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRL 97 (128)
T ss_dssp SCCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 888887765554444433
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.69 E-value=1.3e-17 Score=162.88 Aligned_cols=106 Identities=20% Similarity=0.295 Sum_probs=92.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCC-----cchhccccCCcccccccccccccccCCCCC-----------------
Q 046419 29 GVQLKKGPWTAAEDAILTEYVRKHGEGN-----WNAVQRNTGLARCGKSCRLRWANHLRPNLK----------------- 86 (505)
Q Consensus 29 ~~~lkKG~WT~EEDelL~~lV~k~G~~n-----W~~IAk~m~~gRT~kQCR~Rw~n~L~p~lk----------------- 86 (505)
...++|++||+|||++|+++|+++|..+ |.+||+.|+ |||+.|||.||..+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4567899999999999999999998743 999999999 99999999999999999886
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h------------------------------------------------
Q 046419 87 ------------KGTFSPEEERLIVELHAQ-L------------------------------------------------ 105 (505)
Q Consensus 87 ------------kg~WT~EED~lLlelV~k-y------------------------------------------------ 105 (505)
+..||.|||-.|...+++ |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999999887 1
Q ss_pred -----CC----CHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419 106 -----GN----KWARMAAQLPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 106 -----G~----kWskIAk~LpgRT~~qcKnRW~~llkk~ 135 (505)
|. .|.+||+.+++||.+.+|+||+.+++..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 5999999999999999999999988776
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.63 E-value=5.3e-17 Score=144.49 Aligned_cols=84 Identities=20% Similarity=0.363 Sum_probs=78.3
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhcccc----CCcccccccccccccccC-----CCCCCC-CCCHHHHH
Q 046419 27 EGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNT----GLARCGKSCRLRWANHLR-----PNLKKG-TFSPEEER 96 (505)
Q Consensus 27 ~~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m----~~gRT~kQCR~Rw~n~L~-----p~lkkg-~WT~EED~ 96 (505)
..+...++++||.|||++|+++|++||.++|.+|++.+ + +||..||++||+++++ |.++++ +|++||+.
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~ 88 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLD 88 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHH
Confidence 45678899999999999999999999999999999985 5 8999999999999998 888888 99999999
Q ss_pred HHHHHHHHhCCCHHH
Q 046419 97 LIVELHAQLGNKWAR 111 (505)
Q Consensus 97 lLlelV~kyG~kWsk 111 (505)
+|++++..+|++|.+
T Consensus 89 rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 89 RVLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHccchhc
Confidence 999999999999976
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.62 E-value=2.7e-16 Score=128.62 Aligned_cols=60 Identities=25% Similarity=0.377 Sum_probs=47.8
Q ss_pred cccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 046419 73 CRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVK 133 (505)
Q Consensus 73 CR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llk 133 (505)
+.-||.++|+|.+++++||+|||++|+++|++||.+|++||+.| |||+++||+||+.+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 9999999999996543
No 13
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.61 E-value=3e-16 Score=139.80 Aligned_cols=80 Identities=24% Similarity=0.387 Sum_probs=73.7
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhcccc----CCccccccccccccccc-----CCCCCCCCCCHHH-HHH
Q 046419 28 GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNT----GLARCGKSCRLRWANHL-----RPNLKKGTFSPEE-ERL 97 (505)
Q Consensus 28 ~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m----~~gRT~kQCR~Rw~n~L-----~p~lkkg~WT~EE-D~l 97 (505)
.+...++++||.|||++|+++|++||.++|.+|++.+ . +||..||++||++++ +|.++++.|++|| +++
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~ 103 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDR 103 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHH
Confidence 4567789999999999999999999999999999874 5 899999999999999 7999999999999 899
Q ss_pred HHHHHHHhCCC
Q 046419 98 IVELHAQLGNK 108 (505)
Q Consensus 98 LlelV~kyG~k 108 (505)
|++++..||++
T Consensus 104 v~~~h~~~g~~ 114 (122)
T 2roh_A 104 VLAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhhH
Confidence 99999999963
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1.9e-16 Score=123.67 Aligned_cols=58 Identities=26% Similarity=0.486 Sum_probs=54.2
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCC
Q 046419 28 GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLK 86 (505)
Q Consensus 28 ~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lk 86 (505)
..+.++|++||+|||++|+++|.+||..+|.+||+.|+ +|+++|||+||.++|+|.++
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 35678999999999999999999999779999999998 99999999999999999865
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.60 E-value=2e-16 Score=120.26 Aligned_cols=52 Identities=46% Similarity=0.928 Sum_probs=49.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCC
Q 046419 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPN 84 (505)
Q Consensus 32 lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~ 84 (505)
++||+||+|||++|+++|.+||..+|.+||+.|+ +|+++|||+||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5899999999999999999999878999999998 999999999999999874
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.58 E-value=2.8e-15 Score=121.37 Aligned_cols=60 Identities=22% Similarity=0.350 Sum_probs=56.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCC
Q 046419 81 LRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGL 140 (505)
Q Consensus 81 L~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~ 140 (505)
+.|.+++++||+|||++|+++|++||.+|..||+.|+|||+.|||+||+.++++..+.+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g~ 62 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGL 62 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCT
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 467889999999999999999999999999999999999999999999999999887755
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.58 E-value=2.8e-16 Score=119.32 Aligned_cols=52 Identities=31% Similarity=0.673 Sum_probs=48.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCC
Q 046419 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPN 84 (505)
Q Consensus 32 lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~ 84 (505)
++||+||+|||++|+++|++||.++|.+||+.|+ +|+++|||+||.++|+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999999999999998 999999999999999874
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.1e-15 Score=118.35 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=57.0
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCC
Q 046419 80 HLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGL 140 (505)
Q Consensus 80 ~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~ 140 (505)
+|+|.+++++||+|||++|+++|++||.+|.+||+ |+|||+.|||+||+.++++.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 68999999999999999999999999999999999 8899999999999999999988653
No 19
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.8e-15 Score=118.74 Aligned_cols=66 Identities=18% Similarity=0.319 Sum_probs=61.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCCCCCCCC
Q 046419 82 RPNLKKGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEI 147 (505)
Q Consensus 82 ~p~lkkg~WT~EED~lLlelV~kyG-~kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~~~~~~e~ 147 (505)
.+.+++++||+|||++|+++|++|| .+|.+||+.|+|||+.||++||+.+|++.++++.|+..++.
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd~ 70 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSSG 70 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhcC
Confidence 4578899999999999999999999 78999999999999999999999999999999988887763
No 20
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.55 E-value=9.2e-16 Score=123.20 Aligned_cols=64 Identities=27% Similarity=0.373 Sum_probs=58.4
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCC-cccccccccccccccCCCCCCCCCC
Q 046419 28 GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGL-ARCGKSCRLRWANHLRPNLKKGTFS 91 (505)
Q Consensus 28 ~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~-gRT~kQCR~Rw~n~L~p~lkkg~WT 91 (505)
.....++++||+|||++|+++|++||.++|.+||+.|++ +|+++|||+||.++|++.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 355778999999999999999999998899999999976 8999999999999999999887654
No 21
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=3.3e-15 Score=117.10 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=51.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCC
Q 046419 29 GVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPN 84 (505)
Q Consensus 29 ~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~ 84 (505)
...+++++||+|||++|+++|++||.++|.+||+.|+ +|+++|||+||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 4578999999999999999999999779999999999 999999999999999754
No 22
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=1.7e-14 Score=112.54 Aligned_cols=55 Identities=24% Similarity=0.436 Sum_probs=51.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 82 RPNLKKGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 82 ~p~lkkg~WT~EED~lLlelV~kyG-~kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
.|.+++++||+|||++|+++|++|| .+|.+||+.|+|||+.|||+||+.++++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 4678999999999999999999999 599999999999999999999999988754
No 23
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.50 E-value=2.8e-15 Score=119.41 Aligned_cols=56 Identities=32% Similarity=0.538 Sum_probs=49.1
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCcchhccccC-CcccccccccccccccCCCCC
Q 046419 31 QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTG-LARCGKSCRLRWANHLRPNLK 86 (505)
Q Consensus 31 ~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~-~gRT~kQCR~Rw~n~L~p~lk 86 (505)
..+|++||+|||++|+++|++||.++|.+||+.++ .+|+++|||+||++++++.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 45789999999999999999999889999999864 289999999999999987653
No 24
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.48 E-value=3.9e-14 Score=107.42 Aligned_cols=50 Identities=30% Similarity=0.543 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419 85 LKKGTFSPEEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKR 134 (505)
Q Consensus 85 lkkg~WT~EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk 134 (505)
+++++||+|||++|+++|++||. +|.+||+.|+|||+.||++||+.++++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999998 899999999999999999999998864
No 25
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.46 E-value=6.7e-14 Score=106.24 Aligned_cols=50 Identities=26% Similarity=0.660 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419 85 LKKGTFSPEEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKR 134 (505)
Q Consensus 85 lkkg~WT~EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk 134 (505)
+++++||+|||++|+++|.+||. +|.+||+.|+|||+.|||+||..++++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 699999999999999999999998864
No 26
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=1.4e-14 Score=112.93 Aligned_cols=52 Identities=25% Similarity=0.460 Sum_probs=48.1
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccccccccc
Q 046419 30 VQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL 81 (505)
Q Consensus 30 ~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L 81 (505)
..+.+++||+|||++|+++|++||.++|.+||+.|+.+|+++|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4577899999999999999999997799999999976899999999999875
No 27
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=7.5e-14 Score=113.52 Aligned_cols=60 Identities=17% Similarity=0.364 Sum_probs=55.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCC
Q 046419 82 RPNLKKGTFSPEEERLIVELHAQLG------NKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLP 141 (505)
Q Consensus 82 ~p~lkkg~WT~EED~lLlelV~kyG------~kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~~ 141 (505)
+|.+++++||+|||++|+++|++|| .+|.+||+.|+|||+.||++||+.++++..+.+.+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 4678899999999999999999999 68999999999999999999999999998877764
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.45 E-value=1.4e-14 Score=110.60 Aligned_cols=50 Identities=32% Similarity=0.534 Sum_probs=46.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcchhccccCC-cccccccccccccccC
Q 046419 33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGL-ARCGKSCRLRWANHLR 82 (505)
Q Consensus 33 kKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~-gRT~kQCR~Rw~n~L~ 82 (505)
+||+||+|||++|+++|++||.++|..||+.|++ +|+++||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999975 6999999999999875
No 29
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1e-14 Score=118.66 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=55.2
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCC-----CCcchhccccCCcccccccccccccccCCCCCCCC
Q 046419 28 GGVQLKKGPWTAAEDAILTEYVRKHGE-----GNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGT 89 (505)
Q Consensus 28 ~~~~lkKG~WT~EEDelL~~lV~k~G~-----~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~ 89 (505)
.++.+++++||+|||++|+++|++||. .+|.+||+.|+ +||.+|||+||.++|.+.++.+.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 367889999999999999999999995 69999999999 99999999999999988766653
No 30
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.44 E-value=1.5e-13 Score=110.28 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=53.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhhhhhcC
Q 046419 81 LRPNLKKGTFSPEEERLIVELHAQLG-NKWARMAAQLP--GRTDNEIKNYWNTRVKRRHRQG 139 (505)
Q Consensus 81 L~p~lkkg~WT~EED~lLlelV~kyG-~kWskIAk~Lp--gRT~~qcKnRW~~llkk~~r~~ 139 (505)
..+..++++||+|||++|+++|++|| ++|..||+.|+ |||+.||++||+.++++.+.++
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 34567889999999999999999999 68999999999 9999999999999999876654
No 31
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.44 E-value=1.4e-13 Score=105.03 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhh
Q 046419 86 KKGTFSPEEERLIVELHAQLG-NKWARMAAQLP--GRTDNEIKNYWNTRVKR 134 (505)
Q Consensus 86 kkg~WT~EED~lLlelV~kyG-~kWskIAk~Lp--gRT~~qcKnRW~~llkk 134 (505)
++++||+|||++|+++|++|| ++|..||+.|+ |||+.||++||..+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 68999999999 99999999999999875
No 32
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.43 E-value=1.4e-13 Score=107.73 Aligned_cols=52 Identities=17% Similarity=0.299 Sum_probs=48.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419 83 PNLKKGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWNTRVKR 134 (505)
Q Consensus 83 p~lkkg~WT~EED~lLlelV~kyG-~kWskIAk~LpgRT~~qcKnRW~~llkk 134 (505)
+.+++++||+|||++|+++|++|| .+|.+||+.|+|||+.|||+||+.++..
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 567899999999999999999999 7999999999999999999999988764
No 33
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=9.2e-15 Score=116.29 Aligned_cols=57 Identities=18% Similarity=0.330 Sum_probs=51.9
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCC
Q 046419 29 GVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKG 88 (505)
Q Consensus 29 ~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg 88 (505)
.+.++|++||+|||++|+++|++||. +|.+||+ ++ +|+++|||+||.++|++.++++
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 56889999999999999999999999 9999999 66 7999999999999998766554
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.41 E-value=1.4e-14 Score=129.56 Aligned_cols=108 Identities=17% Similarity=0.209 Sum_probs=79.1
Q ss_pred ccCCCcceecccCCCCCCCCCCCC---CCCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccccccc
Q 046419 3 LGNSNGEQLESGVGGLNVSDGSGG---EGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWAN 79 (505)
Q Consensus 3 ~g~~~~~~~~s~~gg~~~~~~s~~---~~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n 79 (505)
+|..+|..++..++|+....+..+ ...+.+++|+||+|||++|+++|.+||. +|..||+.|+ +|+..||+.||.+
T Consensus 20 ~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~ 97 (131)
T 3zqc_A 20 NGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNS 97 (131)
T ss_dssp HCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHH
Confidence 577899999999988765443222 3466889999999999999999999998 9999999998 9999999999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhC
Q 046419 80 HLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQL 116 (505)
Q Consensus 80 ~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~L 116 (505)
+|.+.+..+.|+.+--. .....+.+|+.|++.|
T Consensus 98 ~l~~~~~~~~~~~~~~~----p~~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 98 SISKRISTNSNHKEILL----PDRSKKRKAADVPKKL 130 (131)
T ss_dssp TTGGGCCCCTTSCCCCC----CCCC------------
T ss_pred HHHHHhhcCCCcccccC----chhhhhhhhhhcchhc
Confidence 99999999888766311 1111234588888765
No 35
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.39 E-value=4e-14 Score=114.59 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=53.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCC
Q 046419 28 GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKK 87 (505)
Q Consensus 28 ~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkk 87 (505)
..+.+++|+||+|||++|+++|++||. +|.+||+.|+ +||..||+.||..+|.+..+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 356889999999999999999999999 9999999999 999999999999998765554
No 36
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.38 E-value=5.8e-13 Score=106.04 Aligned_cols=51 Identities=27% Similarity=0.459 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhhh
Q 046419 85 LKKGTFSPEEERLIVELHAQLG-NKWARMAAQLP--GRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 85 lkkg~WT~EED~lLlelV~kyG-~kWskIAk~Lp--gRT~~qcKnRW~~llkk~ 135 (505)
.++++||+|||++|+++|++|| .+|.+||+.++ |||+.|||+||+.+++..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4688999999999999999999 58999999965 999999999999998764
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.36 E-value=8.7e-13 Score=102.76 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=45.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC-CCCHHHHHHHHHHHh
Q 046419 84 NLKKGTFSPEEERLIVELHAQLG-NKWARMAAQLP-GRTDNEIKNYWNTRV 132 (505)
Q Consensus 84 ~lkkg~WT~EED~lLlelV~kyG-~kWskIAk~Lp-gRT~~qcKnRW~~ll 132 (505)
.+.+++||+|||++|+++|++|| .+|.+||+.|+ +||+.||+.||..++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 45688999999999999999999 89999999999 999999999998764
No 38
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.32 E-value=6.5e-13 Score=109.96 Aligned_cols=52 Identities=23% Similarity=0.404 Sum_probs=47.7
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccccccccc
Q 046419 28 GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL 81 (505)
Q Consensus 28 ~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L 81 (505)
......+++||+|||++|+++|++|| ++|.+||+.|+ +||.+||+.||.++.
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRLP 63 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTSC
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 45566789999999999999999999 59999999999 999999999999983
No 39
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.97 E-value=2e-13 Score=115.14 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=53.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhhh
Q 046419 80 HLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHR 137 (505)
Q Consensus 80 ~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~r 137 (505)
.+.+.+++++||+|||++|+++|.+||.+|..||+.|+|||++||++||+.++++...
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 4677889999999999999999999999999999999999999999999999887644
No 40
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.30 E-value=9.6e-13 Score=116.92 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=68.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCCCCCCCCCchhhhhhhhcccc
Q 046419 82 RPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQHQHQHQNHQ 161 (505)
Q Consensus 82 ~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~~~~~~e~q~~~~~~~~~qq~q 161 (505)
.+..+++.||+|||++|+++|++||.+|..||+.|+||+..||+.||..++...+.++.|+.+++.............+.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 34678999999999999999999999999999999999999999999999999999998888877666555444444443
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.30 E-value=8.8e-13 Score=114.76 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=65.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccC---Cccccccccccccccc-----CCCCCCCCCCHHHHHH-H
Q 046419 28 GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTG---LARCGKSCRLRWANHL-----RPNLKKGTFSPEEERL-I 98 (505)
Q Consensus 28 ~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~---~gRT~kQCR~Rw~n~L-----~p~lkkg~WT~EED~l-L 98 (505)
.+..+++++||+|||++|+++|++||.++|.+|++.+. .+||..+|++||++++ .|.++++.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 35678999999999999999999999999999999762 3899999999999999 6888888777666555 7
Q ss_pred HHHHHHhC
Q 046419 99 VELHAQLG 106 (505)
Q Consensus 99 lelV~kyG 106 (505)
++|+..++
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 42
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.28 E-value=1.2e-12 Score=109.38 Aligned_cols=69 Identities=23% Similarity=0.434 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhccc----cCCccccccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 046419 35 GPWTAAEDAILTEYVRKHGEGNWNAVQRN----TGLARCGKSCRLRWANHL-----RPNLKKG-TFSPEEERLIVELHAQ 104 (505)
Q Consensus 35 G~WT~EEDelL~~lV~k~G~~nW~~IAk~----m~~gRT~kQCR~Rw~n~L-----~p~lkkg-~WT~EED~lLlelV~k 104 (505)
++||+|||++|+++|++||.++|.+|++. ++ +||..+|++||++++ .|..+++ +...+...+++.+++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999985 66 999999999999998 5654544 6888888889988865
No 43
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.27 E-value=1.5e-12 Score=111.72 Aligned_cols=73 Identities=19% Similarity=0.417 Sum_probs=63.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCCCCCCCCCchhhhhhh
Q 046419 84 NLKKGTFSPEEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQHQHQ 156 (505)
Q Consensus 84 ~lkkg~WT~EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~~~~~~e~q~~~~~~~~ 156 (505)
.+++++||+|||++|+++|++||. +|..||+.|+||++.||+.||..++.+.++++.|+.+++......+...
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~ 74 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 74 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHh
Confidence 368999999999999999999996 6999999999999999999999999999888888877765554444333
No 44
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-12 Score=107.16 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=47.4
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCC
Q 046419 27 EGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLK 86 (505)
Q Consensus 27 ~~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lk 86 (505)
.-.+.++||+||+|||++|+++|++||. +|.+||+.| +|++.||+.||.. |....+
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence 3467899999999999999999999999 799999999 7999999999985 444433
No 45
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.25 E-value=1.3e-12 Score=106.69 Aligned_cols=57 Identities=14% Similarity=0.344 Sum_probs=50.5
Q ss_pred CCCCCCCCccCCCCHHHHHHHHHHHHHhCC---CCcchhccccCCcccccccccccccccC
Q 046419 25 GGEGGVQLKKGPWTAAEDAILTEYVRKHGE---GNWNAVQRNTGLARCGKSCRLRWANHLR 82 (505)
Q Consensus 25 ~~~~~~~lkKG~WT~EEDelL~~lV~k~G~---~nW~~IAk~m~~gRT~kQCR~Rw~n~L~ 82 (505)
+..++....+++||+|||++|+++|++||. .+|.+||+.|| |||.+||+.||..++.
T Consensus 9 ~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 9 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 334566788999999999999999999993 48999999999 9999999999998764
No 46
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.23 E-value=9.4e-12 Score=101.69 Aligned_cols=51 Identities=12% Similarity=0.294 Sum_probs=47.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419 84 NLKKGTFSPEEERLIVELHAQLG----NKWARMAAQLPGRTDNEIKNYWNTRVKR 134 (505)
Q Consensus 84 ~lkkg~WT~EED~lLlelV~kyG----~kWskIAk~LpgRT~~qcKnRW~~llkk 134 (505)
...+++||.|||++|+++|++|| .+|.+||+.|+|||..||++||+.+++.
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 45788999999999999999999 5799999999999999999999988754
No 47
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.21 E-value=4.4e-12 Score=109.56 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCCCCCCCCCchhhh
Q 046419 87 KGTFSPEEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQH 153 (505)
Q Consensus 87 kg~WT~EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~~~~~~e~q~~~~~ 153 (505)
|+.||+|||++|+++|++||. +|..||..|+||++.||+.||..++.+.+.++.|+.+++......+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~ 68 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKY 68 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHH
Confidence 579999999999999999996 7999999999999999999999999999988888877765554433
No 48
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.19 E-value=1.2e-11 Score=102.40 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=44.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 046419 84 NLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTR 131 (505)
Q Consensus 84 ~lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~l 131 (505)
...+++||+|||++|+++|++||.+|.+||+.|++||+.||+.||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 346789999999999999999999999999999999999999999865
No 49
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.82 E-value=1.8e-12 Score=109.30 Aligned_cols=54 Identities=26% Similarity=0.447 Sum_probs=50.4
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCC
Q 046419 28 GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRP 83 (505)
Q Consensus 28 ~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p 83 (505)
..+.+++|+||+|||++|+++|.+||. +|..||+.|+ +||..||+.||.++|..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 466889999999999999999999999 8999999999 99999999999998853
No 50
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.11 E-value=1e-10 Score=92.72 Aligned_cols=51 Identities=16% Similarity=0.326 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHH---hhCCCCCHHHHHHHHHHHhhhh
Q 046419 85 LKKGTFSPEEERLIVELHAQLGNKWARMA---AQLPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 85 lkkg~WT~EED~lLlelV~kyG~kWskIA---k~LpgRT~~qcKnRW~~llkk~ 135 (505)
.++.+||+|||+.|+++|++||.+|..|+ ..+.+||..++|+||+.+.++.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 36789999999999999999999999999 5678999999999999998864
No 51
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.11 E-value=3e-11 Score=107.50 Aligned_cols=54 Identities=28% Similarity=0.454 Sum_probs=49.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhh
Q 046419 81 LRPNLKKGTFSPEEERLIVELHAQLGN-KWARMAAQ----LPGRTDNEIKNYWNTRVKR 134 (505)
Q Consensus 81 L~p~lkkg~WT~EED~lLlelV~kyG~-kWskIAk~----LpgRT~~qcKnRW~~llkk 134 (505)
+.+..++++||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||+.+++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 455678999999999999999999997 99999998 4899999999999999983
No 52
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.10 E-value=1.2e-10 Score=97.28 Aligned_cols=49 Identities=29% Similarity=0.479 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhhh
Q 046419 88 GTFSPEEERLIVELHAQLGN-KWARMAAQ----LPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 88 g~WT~EED~lLlelV~kyG~-kWskIAk~----LpgRT~~qcKnRW~~llkk~~ 136 (505)
.+||+|||++|+++|++||. +|+.|++. |+|||+.+||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999997 89999996 899999999999999997543
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.09 E-value=9.8e-11 Score=101.88 Aligned_cols=53 Identities=25% Similarity=0.397 Sum_probs=47.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC----CCCCHHHHHHHHHHHhhhh
Q 046419 83 PNLKKGTFSPEEERLIVELHAQLGN-KWARMAAQL----PGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 83 p~lkkg~WT~EED~lLlelV~kyG~-kWskIAk~L----pgRT~~qcKnRW~~llkk~ 135 (505)
...++++||.|||+.|+++|++||. +|+.|++.+ ++||+.+||+||+.+++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3467889999999999999999996 899999975 8999999999999999743
No 54
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.06 E-value=9.8e-11 Score=104.36 Aligned_cols=51 Identities=27% Similarity=0.473 Sum_probs=46.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC----CCCCHHHHHHHHHHHhhh
Q 046419 84 NLKKGTFSPEEERLIVELHAQLGN-KWARMAAQL----PGRTDNEIKNYWNTRVKR 134 (505)
Q Consensus 84 ~lkkg~WT~EED~lLlelV~kyG~-kWskIAk~L----pgRT~~qcKnRW~~llkk 134 (505)
..++++||.|||+.|+++|++||. +|+.|++.+ .+||+.+||+||+++++.
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 457889999999999999999996 899999974 899999999999999963
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.03 E-value=2.9e-10 Score=96.95 Aligned_cols=50 Identities=24% Similarity=0.413 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419 86 KKGTFSPEEERLIVELHAQLG----NKWARMAAQLPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 86 kkg~WT~EED~lLlelV~kyG----~kWskIAk~LpgRT~~qcKnRW~~llkk~ 135 (505)
.+++||.|||++|++++.+|| .+|.+||+.|+|||.++|++||+.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999996 57999999999999999999999987764
No 56
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.00 E-value=1.9e-10 Score=112.46 Aligned_cols=54 Identities=19% Similarity=0.441 Sum_probs=48.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC------HHHHHhhCCCCCHHHHHHHHHHHhhhhhh
Q 046419 84 NLKKGTFSPEEERLIVELHAQLGNK------WARMAAQLPGRTDNEIKNYWNTRVKRRHR 137 (505)
Q Consensus 84 ~lkkg~WT~EED~lLlelV~kyG~k------WskIAk~LpgRT~~qcKnRW~~llkk~~r 137 (505)
.++++.||+|||++|+++|++||++ |.+||+.|+|||+++||+||+.+|++++.
T Consensus 5 ~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 5 SHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ---CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 5678899999999999999999875 99999999999999999999999999865
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.87 E-value=2.6e-10 Score=97.16 Aligned_cols=48 Identities=17% Similarity=0.378 Sum_probs=43.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---CCcchhccccCCccccccccccccccc
Q 046419 33 KKGPWTAAEDAILTEYVRKHGE---GNWNAVQRNTGLARCGKSCRLRWANHL 81 (505)
Q Consensus 33 kKG~WT~EEDelL~~lV~k~G~---~nW~~IAk~m~~gRT~kQCR~Rw~n~L 81 (505)
.++.||+|||++|++++.+|+. .+|.+||+.|| |||.+||+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4678999999999999999973 47999999999 999999999999864
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=6.6e-09 Score=81.59 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 046419 86 KKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVK 133 (505)
Q Consensus 86 kkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llk 133 (505)
...+||+||++++++++.+||.+|..||..|++||..+|+.+|....+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999999999999999999999999986654
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=2.4e-09 Score=84.12 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=45.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccccccccc
Q 046419 29 GVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL 81 (505)
Q Consensus 29 ~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L 81 (505)
......++||+||+++|++++.+||. +|..||+.|+ +|+..||+++|....
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 34456789999999999999999998 9999999999 999999999986543
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.70 E-value=1.8e-08 Score=82.09 Aligned_cols=50 Identities=12% Similarity=0.280 Sum_probs=45.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419 84 NLKKGTFSPEEERLIVELHAQLG----NKWARMAAQLPGRTDNEIKNYWNTRVKR 134 (505)
Q Consensus 84 ~lkkg~WT~EED~lLlelV~kyG----~kWskIAk~LpgRT~~qcKnRW~~llkk 134 (505)
..+.+.||.||+++|++++.+|+ .+|.+||+.| |||..+|+.||+.+++.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34567899999999999999997 4699999998 99999999999988765
No 61
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.70 E-value=1.9e-08 Score=85.69 Aligned_cols=66 Identities=8% Similarity=0.140 Sum_probs=59.2
Q ss_pred ccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhC-----CCCCHHHHHHHHHHHhhhhhhcC
Q 046419 70 GKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQL-----PGRTDNEIKNYWNTRVKRRHRQG 139 (505)
Q Consensus 70 ~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~L-----pgRT~~qcKnRW~~llkk~~r~~ 139 (505)
..=+.++|.++|.+ .+||.||++.|++|+++||.+|..|+..+ ++||..++|+||..+.++.....
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45678899999964 89999999999999999999999999999 58999999999999988877654
No 62
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.67 E-value=1.3e-08 Score=108.43 Aligned_cols=47 Identities=17% Similarity=0.378 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419 88 GTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKR 134 (505)
Q Consensus 88 g~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk 134 (505)
..||+||.+++++++.+||.+|..||+.+++||..|||++|....++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999865554
No 63
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.64 E-value=6.7e-09 Score=82.29 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=43.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcchhc---cccCCcccccccccccccccC
Q 046419 33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQ---RNTGLARCGKSCRLRWANHLR 82 (505)
Q Consensus 33 kKG~WT~EEDelL~~lV~k~G~~nW~~IA---k~m~~gRT~kQCR~Rw~n~L~ 82 (505)
++++||+|||+.|+++|++||. +|..|+ ..+. +||..++++||+++..
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 7889999999999999999999 999999 4555 9999999999998765
No 64
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.62 E-value=3.3e-08 Score=96.08 Aligned_cols=51 Identities=16% Similarity=0.301 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419 85 LKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 85 lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~ 135 (505)
.....||+||++++++++.+||++|..||+.|++||..|||++|....++.
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 345689999999999999999999999999999999999999999877663
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.43 E-value=3.9e-08 Score=80.04 Aligned_cols=50 Identities=16% Similarity=0.237 Sum_probs=43.6
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCC---CCcchhccccCCcccccccccccccccC
Q 046419 31 QLKKGPWTAAEDAILTEYVRKHGE---GNWNAVQRNTGLARCGKSCRLRWANHLR 82 (505)
Q Consensus 31 ~lkKG~WT~EEDelL~~lV~k~G~---~nW~~IAk~m~~gRT~kQCR~Rw~n~L~ 82 (505)
..+++.||.|||++|.+++.+|+. .+|.+||+.| +|+.++|+.||..+..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 345788999999999999999984 4799999998 5999999999987654
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.38 E-value=5.3e-07 Score=73.68 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419 86 KKGTFSPEEERLIVELHAQLGN----KWARMAAQLPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 86 kkg~WT~EED~lLlelV~kyG~----kWskIAk~LpgRT~~qcKnRW~~llkk~ 135 (505)
....||.||+++|.+++..|+. +|.+||..++|||..+|+.||..+++.+
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 3468999999999999999984 5999999999999999999999885543
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.33 E-value=1e-07 Score=77.86 Aligned_cols=49 Identities=20% Similarity=0.405 Sum_probs=44.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCcchhccccCCcccccccccccccccCC
Q 046419 34 KGPWTAAEDAILTEYVRKHGE---GNWNAVQRNTGLARCGKSCRLRWANHLRP 83 (505)
Q Consensus 34 KG~WT~EEDelL~~lV~k~G~---~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p 83 (505)
...||.+|+++|.+++..|+. ++|.+||..|| +|+..+|+.||..++.-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 357999999999999999976 57999999999 99999999999987643
No 68
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.28 E-value=2.2e-07 Score=90.33 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=46.5
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccC
Q 046419 30 VQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLR 82 (505)
Q Consensus 30 ~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~ 82 (505)
.....++||.||++++++++.+||. +|.+||+.|+ +||..||+.+|.++.+
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998 9999999999 9999999999987764
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.16 E-value=3.8e-07 Score=71.47 Aligned_cols=48 Identities=27% Similarity=0.546 Sum_probs=43.0
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcchhcc-ccCCcccccccccccccccC
Q 046419 34 KGPWTAAEDAILTEYVRKH--------GEGNWNAVQR-NTGLARCGKSCRLRWANHLR 82 (505)
Q Consensus 34 KG~WT~EEDelL~~lV~k~--------G~~nW~~IAk-~m~~gRT~kQCR~Rw~n~L~ 82 (505)
|.+||+|||++|+++|.+| |..-|+++++ .++ .+|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5789999999999999999 4457999999 787 9999999999998874
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.14 E-value=2.1e-06 Score=67.23 Aligned_cols=47 Identities=17% Similarity=0.368 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCC-HHHHHh-hCCCCCHHHHHHHHHHHhh
Q 046419 87 KGTFSPEEERLIVELHAQL--------GNK-WARMAA-QLPGRTDNEIKNYWNTRVK 133 (505)
Q Consensus 87 kg~WT~EED~lLlelV~ky--------G~k-WskIAk-~LpgRT~~qcKnRW~~llk 133 (505)
+.+||+|||+.|++.|.+| |+. |.++|+ .++++|-.+||+||.+.|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 4689999999999999999 433 999999 8999999999999998764
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=1.8e-05 Score=62.51 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=45.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHHHHHHHhh
Q 046419 83 PNLKKGTFSPEEERLIVELHAQLGNKWARMAA-QLPGRTDNEIKNYWNTRVK 133 (505)
Q Consensus 83 p~lkkg~WT~EED~lLlelV~kyG~kWskIAk-~LpgRT~~qcKnRW~~llk 133 (505)
|.+....||+||.++.++++.+||.+|..|++ .|++|+..+|...|....+
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKk 56 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKK 56 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHHC
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcccC
Confidence 55677899999999999999999999999999 5999999999988864433
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.91 E-value=3e-05 Score=78.65 Aligned_cols=101 Identities=19% Similarity=0.263 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccc-------cccccc---------------------------
Q 046419 36 PWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRL-------RWANHL--------------------------- 81 (505)
Q Consensus 36 ~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~-------Rw~n~L--------------------------- 81 (505)
.||..|...++.++.+||..+|..||..|+ +++...++. ||..+-
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999998 888666542 221110
Q ss_pred ----------------CCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHh------------hCCCCCHHHHHHHHH
Q 046419 82 ----------------RPNLKKGTFSPEEERLIVELHAQLGN----KWARMAA------------QLPGRTDNEIKNYWN 129 (505)
Q Consensus 82 ----------------~p~lkkg~WT~EED~lLlelV~kyG~----kWskIAk------------~LpgRT~~qcKnRW~ 129 (505)
.+..++..||+|||..|+-++.+||- .|.+|.. .+..||+.+|..|..
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~ 270 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN 270 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 01124457999999999999999995 4999973 346799999999999
Q ss_pred HHhhhhhh
Q 046419 130 TRVKRRHR 137 (505)
Q Consensus 130 ~llkk~~r 137 (505)
.+++-..+
T Consensus 271 tLi~~iek 278 (304)
T 1ofc_X 271 TLITLIER 278 (304)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876543
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.90 E-value=1.4e-05 Score=67.66 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHHHHHHHhhhhhh
Q 046419 89 TFSPEEERLIVELHAQLGN---KWARMAAQLPGRTDNEIKNYWNTRVKRRHR 137 (505)
Q Consensus 89 ~WT~EED~lLlelV~kyG~---kWskIAk~LpgRT~~qcKnRW~~llkk~~r 137 (505)
.||.|||..||...++-|. .|+.||+.|.+|+.+||++||+.+++=...
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 5999999999999999986 699999999999999999999998876544
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.90 E-value=1.8e-06 Score=70.44 Aligned_cols=44 Identities=14% Similarity=0.353 Sum_probs=39.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---CcchhccccCCcccccccccccc
Q 046419 34 KGPWTAAEDAILTEYVRKHGEG---NWNAVQRNTGLARCGKSCRLRWA 78 (505)
Q Consensus 34 KG~WT~EEDelL~~lV~k~G~~---nW~~IAk~m~~gRT~kQCR~Rw~ 78 (505)
.+.||.||+++|.+++.+|..+ +|.+||+.|| ||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4579999999999999999764 8999999999 999999999985
No 75
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=1e-05 Score=63.89 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=43.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcchhcc-ccCCccccccccccccc
Q 046419 29 GVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQR-NTGLARCGKSCRLRWAN 79 (505)
Q Consensus 29 ~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk-~m~~gRT~kQCR~Rw~n 79 (505)
.+.++...||+||-+++.+++.+||. +|..|++ .|+ +|+..+|.+.|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 45677889999999999999999999 9999998 588 9999999887653
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.76 E-value=3.7e-06 Score=68.66 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHH
Q 046419 87 KGTFSPEEERLIVELHAQLGN----KWARMAAQLPGRTDNEIKNYWN 129 (505)
Q Consensus 87 kg~WT~EED~lLlelV~kyG~----kWskIAk~LpgRT~~qcKnRW~ 129 (505)
...||.||+++|.+++.+|+. +|.+||+.|+|||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999985 6999999999999999999884
No 77
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.85 E-value=5.8e-06 Score=66.47 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419 89 TFSPEEERLIVELHAQLGN---KWARMAAQLPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 89 ~WT~EED~lLlelV~kyG~---kWskIAk~LpgRT~~qcKnRW~~llkk~ 135 (505)
.||.|||..|+...++-|. .|+.||+.| +|+.+||++||+.+++=.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLF 64 (70)
Confidence 4999999999999999997 699999999 999999999999887643
No 78
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.60 E-value=0.00015 Score=61.68 Aligned_cols=61 Identities=8% Similarity=0.185 Sum_probs=52.1
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCC-----CCCHHHHHHHHHHHhhhhhhcCC
Q 046419 76 RWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLP-----GRTDNEIKNYWNTRVKRRHRQGL 140 (505)
Q Consensus 76 Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~Lp-----gRT~~qcKnRW~~llkk~~r~~~ 140 (505)
.|..+|. ...||.||...|++|+++|+-+|..|+..+. .||-.++|.||..+.++..+...
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 4555553 4689999999999999999999999999984 79999999999999988876543
No 79
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.50 E-value=3.2e-05 Score=82.66 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=44.9
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccccccccc
Q 046419 30 VQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL 81 (505)
Q Consensus 30 ~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L 81 (505)
......+||.||.+++++++.+||. +|.+||+.|+ +|+..|||.+|.++-
T Consensus 376 ~~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 376 IQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred ccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3456789999999999999999999 9999999999 999999999887543
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.45 E-value=0.00024 Score=57.25 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHHHHHH
Q 046419 87 KGTFSPEEERLIVELHAQLGNKWARMAA-QLPGRTDNEIKNYWNT 130 (505)
Q Consensus 87 kg~WT~EED~lLlelV~kyG~kWskIAk-~LpgRT~~qcKnRW~~ 130 (505)
...||+||.+++.+++.+||.+|..|++ .|++|+..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5999999999999873
No 81
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.42 E-value=0.00021 Score=60.76 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 046419 87 KGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRV 132 (505)
Q Consensus 87 kg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~ll 132 (505)
...||+||.+++.+++.+||.+|.+||..|++||..+|-..|....
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~K 88 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK 88 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccc
Confidence 3579999999999999999999999999999999999999886543
No 82
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.15 E-value=0.00013 Score=58.82 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=39.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcchhcc-ccCCcccccccccccc
Q 046419 33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQR-NTGLARCGKSCRLRWA 78 (505)
Q Consensus 33 kKG~WT~EEDelL~~lV~k~G~~nW~~IAk-~m~~gRT~kQCR~Rw~ 78 (505)
....||+||.+++.+++.+||. +|..|++ .|+ +|+..+|.+.|.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHH
Confidence 3467999999999999999999 9999999 588 999999988665
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.12 E-value=0.00011 Score=62.52 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=43.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcchhccccC----Cccccccccccccccc
Q 046419 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTG----LARCGKSCRLRWANHL 81 (505)
Q Consensus 32 lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~----~gRT~kQCR~Rw~n~L 81 (505)
++-+.||.||++.|++++++|+. .|..|+..+. .+|+..++++||..+.
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999999 9999999982 2799999999998754
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.09 E-value=0.00016 Score=61.53 Aligned_cols=43 Identities=16% Similarity=0.313 Sum_probs=40.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccc
Q 046419 34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWA 78 (505)
Q Consensus 34 KG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~ 78 (505)
...||+||.+++.+++..||+ +|..||+.|+ +|+..+|.+.|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHh
Confidence 478999999999999999999 9999999998 999999998765
No 85
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.00 E-value=6.3e-05 Score=62.23 Aligned_cols=50 Identities=22% Similarity=0.497 Sum_probs=40.9
Q ss_pred CccCCCCHHHHHHHHHHHHHhCC---------CCcchhcccc---CCccccccccccccccc
Q 046419 32 LKKGPWTAAEDAILTEYVRKHGE---------GNWNAVQRNT---GLARCGKSCRLRWANHL 81 (505)
Q Consensus 32 lkKG~WT~EEDelL~~lV~k~G~---------~nW~~IAk~m---~~gRT~kQCR~Rw~n~L 81 (505)
.+...||.+|..+|++++..+.. ..|.+||..| |..|++.||+.||.++.
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35688999999999999876422 2699999986 45799999999998765
No 86
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.78 E-value=0.0017 Score=61.44 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHhC-CCHHHHHhhC--------------CCCCHHHHHHHHHHHhhhh
Q 046419 89 TFSPEEERLIVELHAQLG-NKWARMAAQL--------------PGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 89 ~WT~EED~lLlelV~kyG-~kWskIAk~L--------------pgRT~~qcKnRW~~llkk~ 135 (505)
.||++||..|+..|.+|| +.|..|-... ..++...+..|...+++-.
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence 599999999999999999 8899996632 1256778999987776644
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.77 E-value=0.0012 Score=54.48 Aligned_cols=50 Identities=14% Similarity=0.421 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----------CHHHHHhhCC----CCCHHHHHHHHHHHhhhhh
Q 046419 87 KGTFSPEEERLIVELHAQLGN----------KWARMAAQLP----GRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 87 kg~WT~EED~lLlelV~kyG~----------kWskIAk~Lp----gRT~~qcKnRW~~llkk~~ 136 (505)
...||.+|-.+||+++.++.. .|..||..|. .||+.||+.+|..+.+.-.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 457999999999999976331 4999999973 6999999999998887643
No 88
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.68 E-value=0.0017 Score=55.01 Aligned_cols=47 Identities=15% Similarity=0.348 Sum_probs=41.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC--CCcchhccccCCcccccccccccccc
Q 046419 33 KKGPWTAAEDAILTEYVRKHGE--GNWNAVQRNTGLARCGKSCRLRWANH 80 (505)
Q Consensus 33 kKG~WT~EEDelL~~lV~k~G~--~nW~~IAk~m~~gRT~kQCR~Rw~n~ 80 (505)
+---||.|||..|+...++.|. ..|..||+.++ +|+..|+++||+.+
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 3457999999999999999976 48999999998 99999999999863
No 89
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.26 E-value=0.016 Score=60.26 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccc-------ccccccC--------------------------
Q 046419 36 PWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRL-------RWANHLR-------------------------- 82 (505)
Q Consensus 36 ~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~-------Rw~n~L~-------------------------- 82 (505)
.|+.-|=..++.++.+||..+-..||..|+.+++...++. ||..+-+
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L~ 204 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEALR 204 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999889999999954576554441 2211100
Q ss_pred ------------------CC-CCCCCCCHHHHHHHHHHHHHhCC----CHHHHHhh------------CCCCCHHHHHHH
Q 046419 83 ------------------PN-LKKGTFSPEEERLIVELHAQLGN----KWARMAAQ------------LPGRTDNEIKNY 127 (505)
Q Consensus 83 ------------------p~-lkkg~WT~EED~lLlelV~kyG~----kWskIAk~------------LpgRT~~qcKnR 127 (505)
+. .++..||+|||..||-++.+||- .|.+|-.. |..||...|..|
T Consensus 205 ~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rR 284 (374)
T 2y9y_A 205 RKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARR 284 (374)
T ss_dssp HHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHH
T ss_pred HHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 00 13457999999999999999994 49999555 367999999999
Q ss_pred HHHHhhhhhhc
Q 046419 128 WNTRVKRRHRQ 138 (505)
Q Consensus 128 W~~llkk~~r~ 138 (505)
...+++-..+.
T Consensus 285 c~tLi~~IeKE 295 (374)
T 2y9y_A 285 GNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 99999876554
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.91 E-value=0.0013 Score=53.00 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCcchhccccCCcccccccccccccccC
Q 046419 35 GPWTAAEDAILTEYVRKHGE--GNWNAVQRNTGLARCGKSCRLRWANHLR 82 (505)
Q Consensus 35 G~WT~EEDelL~~lV~k~G~--~nW~~IAk~m~~gRT~kQCR~Rw~n~L~ 82 (505)
-.||.|||..|+..+++-|. .-|..||+.+ +|++.|+.+||..++.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 35999999999999999886 4799999988 6999999999998664
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.18 E-value=0.058 Score=42.88 Aligned_cols=50 Identities=8% Similarity=0.018 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC---HHHHHhhC--CCCCHHHHHHHHHHHhhhh
Q 046419 86 KKGTFSPEEERLIVELHAQLGNK---WARMAAQL--PGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 86 kkg~WT~EED~lLlelV~kyG~k---WskIAk~L--pgRT~~qcKnRW~~llkk~ 135 (505)
.+-.||+|..++++++|+++|.. |..|.+.| +|.|..+|+.|.+++....
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 45579999999999999999954 88998886 6889999999988766544
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.26 E-value=0.013 Score=49.76 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=41.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCcchhccccC----Cccccccccccccccc
Q 046419 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTG----LARCGKSCRLRWANHL 81 (505)
Q Consensus 32 lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~----~gRT~kQCR~Rw~n~L 81 (505)
++...||.||...|++++++|+. .|.-|+.... ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 44578999999999999999999 9999988763 2588888888887654
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.97 E-value=0.23 Score=50.39 Aligned_cols=47 Identities=15% Similarity=0.303 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419 88 GTFSPEEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKR 134 (505)
Q Consensus 88 g~WT~EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk 134 (505)
+.||..|...++.++.+||. .|..||..|.|+|..+|+.++.....+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 46999999999999999996 699999999999999998777655544
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=89.81 E-value=0.37 Score=45.21 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCHHHHHhh--CCCCCHHHHHHHHHHHhhh
Q 046419 86 KKGTFSPEEERLIVELHAQLG---NKWARMAAQ--LPGRTDNEIKNYWNTRVKR 134 (505)
Q Consensus 86 kkg~WT~EED~lLlelV~kyG---~kWskIAk~--LpgRT~~qcKnRW~~llkk 134 (505)
....||+.|-..|++++.+|| .+|..|++. |.+|+...|+..+..++..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999 479999875 7899999999877765544
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=89.12 E-value=0.16 Score=40.37 Aligned_cols=46 Identities=9% Similarity=0.003 Sum_probs=34.9
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCC--CcchhccccCC-cccccccccc
Q 046419 31 QLKKGPWTAAEDAILTEYVRKHGEG--NWNAVQRNTGL-ARCGKSCRLR 76 (505)
Q Consensus 31 ~lkKG~WT~EEDelL~~lV~k~G~~--nW~~IAk~m~~-gRT~kQCR~R 76 (505)
+..+-.||+|+.++++++|.+.|.. -|+.|.+.|+. +.|..+++-|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSH 52 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASH 52 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHH
Confidence 4567789999999999999999952 26789888762 4566666544
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=88.69 E-value=0.22 Score=49.66 Aligned_cols=26 Identities=38% Similarity=0.632 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcchhc
Q 046419 36 PWTAAEDAILTEYVRKHGEGNWNAVQ 61 (505)
Q Consensus 36 ~WT~EEDelL~~lV~k~G~~nW~~IA 61 (505)
.|+.+||..|+..|.+||.|+|..|.
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 49999999999999999999999994
No 97
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=81.54 E-value=5.5 Score=33.59 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccc---ccccccc--CCCCCCCCCCHHHHHHHHHHHHHhCCCH
Q 046419 35 GPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCR---LRWANHL--RPNLKKGTFSPEEERLIVELHAQLGNKW 109 (505)
Q Consensus 35 G~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR---~Rw~n~L--~p~lkkg~WT~EED~lLlelV~kyG~kW 109 (505)
...|.++-..++.++. -|. .-.+||+.+| .+...++ .+|...- .........+.+++..|+++...-.-.-
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~ 80 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTA 80 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCH
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCH
Confidence 4578888888877763 454 7889999987 3333332 2232211 1111223578888888888733322345
Q ss_pred HHHHhhCCC--CCHHHHHHHHH
Q 046419 110 ARMAAQLPG--RTDNEIKNYWN 129 (505)
Q Consensus 110 skIAk~Lpg--RT~~qcKnRW~ 129 (505)
.+|+..| | -+...|....+
T Consensus 81 ~~i~~~l-g~~~s~~tV~r~l~ 101 (141)
T 1u78_A 81 RDIRNEL-QLSASKRTILNVIK 101 (141)
T ss_dssp HHHHHHT-TCCSCHHHHHHHHH
T ss_pred HHHHHHH-CCCccHHHHHHHHH
Confidence 7899988 4 56666665544
No 98
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=76.12 E-value=17 Score=31.81 Aligned_cols=90 Identities=11% Similarity=0.092 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccc------cCCCCC----CCCCCHHHHHHHHHHHHH
Q 046419 35 GPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANH------LRPNLK----KGTFSPEEERLIVELHAQ 104 (505)
Q Consensus 35 G~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~------L~p~lk----kg~WT~EED~lLlelV~k 104 (505)
...+.++-..++.++. .|. ...+||+.++. +...++ ||.+. +.+... ....++++.+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lgi--s~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV-RPCDISRQLRV--SHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC-CHHHHHHHHTC--CSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4688998888888874 455 78899999873 333332 33322 222111 234788888888888876
Q ss_pred hCC-CHHHHHhhCC---------CCCHHHHHHHHH
Q 046419 105 LGN-KWARMAAQLP---------GRTDNEIKNYWN 129 (505)
Q Consensus 105 yG~-kWskIAk~Lp---------gRT~~qcKnRW~ 129 (505)
... .-.+|+..|. .-+...|+.+.+
T Consensus 99 ~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 99 NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred CccchHHHHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 542 2345555551 345565655443
No 99
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=74.28 E-value=6 Score=39.35 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCHHHHHhh--CCCCCHHHHHHHHHHHhhhh
Q 046419 87 KGTFSPEEERLIVELHAQLG---NKWARMAAQ--LPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 87 kg~WT~EED~lLlelV~kyG---~kWskIAk~--LpgRT~~qcKnRW~~llkk~ 135 (505)
++.||+.|-..|++.+.+|| .+|..|+.. |..|+...++.-|+.++..-
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999 479999766 68899999998888766543
No 100
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=61.89 E-value=13 Score=31.02 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCC
Q 046419 95 ERLIVELHAQLGNKWARMAAQLPGR 119 (505)
Q Consensus 95 D~lLlelV~kyG~kWskIAk~LpgR 119 (505)
+.+|-+||+.|| |..+++.+.=|
T Consensus 18 E~ilt~Lv~~YG--W~~L~~~i~I~ 40 (88)
T 2jvw_A 18 QKLLTELVEHYG--WEELSYMVNIN 40 (88)
T ss_dssp HHHHHHHHHHTC--HHHHHHHTTSS
T ss_pred HHHHHHHHHHhC--HHHHHhhcccc
Confidence 578899999999 99999998543
No 101
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=60.24 E-value=13 Score=27.51 Aligned_cols=45 Identities=20% Similarity=0.171 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 90 FSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 90 WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
+++ .+..++.++...|-.+.+||..+ |-+...|+.+....+++..
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 444 44455556656688899999999 8899999988877666543
No 102
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=60.04 E-value=5.4 Score=37.04 Aligned_cols=17 Identities=12% Similarity=0.372 Sum_probs=14.3
Q ss_pred CCCCCCCCCHHHHHHHH
Q 046419 83 PNLKKGTFSPEEERLIV 99 (505)
Q Consensus 83 p~lkkg~WT~EED~lLl 99 (505)
|.-..|-||+|+|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 45678899999999976
No 103
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=58.87 E-value=2.9 Score=36.78 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=39.0
Q ss_pred HHHHHHHHhCC-------CCcchhccccCCcccc----cccccccccccCCCCCCCCCCHHHHHHHHHHHH
Q 046419 44 ILTEYVRKHGE-------GNWNAVQRNTGLARCG----KSCRLRWANHLRPNLKKGTFSPEEERLIVELHA 103 (505)
Q Consensus 44 lL~~lV~k~G~-------~nW~~IAk~m~~gRT~----kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~ 103 (505)
+|..+|.+.|. ..|.+||..|+...+. ...|..|.++|.+ -...+++|...|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~---YE~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS---YDSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH---HHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH---HHCcCHHHHhhHHHHHH
Confidence 34444555544 5899999999755432 3457788888864 23488899998887664
No 104
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=55.21 E-value=9.1 Score=32.96 Aligned_cols=38 Identities=13% Similarity=0.271 Sum_probs=30.9
Q ss_pred HHHHHHHhCC--------CHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419 98 IVELHAQLGN--------KWARMAAQLPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 98 LlelV~kyG~--------kWskIAk~LpgRT~~qcKnRW~~llkk~ 135 (505)
|..+|.+.|+ .|.+||..|.-.....+|..|.++|-.-
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 7888888884 6999999985555788999999887664
No 105
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=53.67 E-value=16 Score=27.88 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHH----hCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 90 FSPEEERLIVELHAQ----LGNKWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 90 WT~EED~lLlelV~k----yG~kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
.++.|-+ ++.++-- .|..|.+||..+ |-+...|+.+....+++..
T Consensus 11 L~~~er~-il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSEREAM-VLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHHHH-HHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 3444444 4444443 467799999999 9999999998887776654
No 106
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=53.45 E-value=20 Score=30.06 Aligned_cols=38 Identities=16% Similarity=0.339 Sum_probs=29.0
Q ss_pred HHHHHHHhCC--------CHHHHHhhCCCCC----HHHHHHHHHHHhhhh
Q 046419 98 IVELHAQLGN--------KWARMAAQLPGRT----DNEIKNYWNTRVKRR 135 (505)
Q Consensus 98 LlelV~kyG~--------kWskIAk~LpgRT----~~qcKnRW~~llkk~ 135 (505)
|..+|.+.|+ .|.+||+.|.--. ...+|..|.+++-.-
T Consensus 49 Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 49 LHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 7777777774 6999999994433 567899998887664
No 107
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=52.86 E-value=22 Score=36.97 Aligned_cols=48 Identities=17% Similarity=0.289 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCC-HHHHHhhCC-CCCHHHHHHHHHHHhhhhh
Q 046419 88 GTFSPEEERLIVELHAQLGNK-WARMAAQLP-GRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 88 g~WT~EED~lLlelV~kyG~k-WskIAk~Lp-gRT~~qcKnRW~~llkk~~ 136 (505)
+.|+..|=..++.+..+||.. -..||..|. |+|..+|+. |...+=+++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry 173 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNI 173 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhh
Confidence 469999999999999999965 999999998 999999995 444444444
No 108
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=52.45 E-value=18 Score=31.10 Aligned_cols=39 Identities=18% Similarity=0.332 Sum_probs=29.6
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCCCCC----HHHHHHHHHHHhhhh
Q 046419 97 LIVELHAQLGN--------KWARMAAQLPGRT----DNEIKNYWNTRVKRR 135 (505)
Q Consensus 97 lLlelV~kyG~--------kWskIAk~LpgRT----~~qcKnRW~~llkk~ 135 (505)
+|..+|.+.|+ .|.+||..|.--. ...+|..|.++|-.-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 37788888884 6999999994332 567899998877664
No 109
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=49.68 E-value=17 Score=27.33 Aligned_cols=31 Identities=10% Similarity=0.136 Sum_probs=26.2
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 105 LGNKWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 105 yG~kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
.|..+.+||+.+ |-+...|+.+....+++..
T Consensus 24 ~g~s~~eIA~~l-gis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 24 TDYTLEEVGKQF-DVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 367799999999 9999999999887776654
No 110
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=49.37 E-value=22 Score=30.88 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=29.6
Q ss_pred HHHHHHHhCC--------CHHHHHhhCCCCC----HHHHHHHHHHHhhhhh
Q 046419 98 IVELHAQLGN--------KWARMAAQLPGRT----DNEIKNYWNTRVKRRH 136 (505)
Q Consensus 98 LlelV~kyG~--------kWskIAk~LpgRT----~~qcKnRW~~llkk~~ 136 (505)
|..+|.+.|+ .|.+||+.|.--. ...+|..|.++|-.--
T Consensus 56 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE 106 (125)
T 2cxy_A 56 LYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFE 106 (125)
T ss_dssp HHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 7777888774 6999999994432 4678999988877653
No 111
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.75 E-value=24 Score=30.56 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=28.9
Q ss_pred HHHHHHHhCC--------CHHHHHhhCCCCC----HHHHHHHHHHHhhhh
Q 046419 98 IVELHAQLGN--------KWARMAAQLPGRT----DNEIKNYWNTRVKRR 135 (505)
Q Consensus 98 LlelV~kyG~--------kWskIAk~LpgRT----~~qcKnRW~~llkk~ 135 (505)
|..+|.+.|+ .|.+||+.|.-.. ...+|..|.++|-.-
T Consensus 47 Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 47 LNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 7778888874 6999999994322 467899998877764
No 112
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=46.88 E-value=48 Score=28.37 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=47.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccc---ccccc--ccCCCCC----CCCCCHHHHHHHHHHHHH
Q 046419 34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCR---LRWAN--HLRPNLK----KGTFSPEEERLIVELHAQ 104 (505)
Q Consensus 34 KG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR---~Rw~n--~L~p~lk----kg~WT~EED~lLlelV~k 104 (505)
....+.|+-..++.++. .|. ...+||+.++. +...++ .+|.. .+.+... ....++++.+.|++++.+
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lgi--s~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 105 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLRV--SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQ 105 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTC--CHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 34689998888888874 454 78899999873 333222 22221 1222211 234788888889988876
Q ss_pred hCC-CHHHHHhhC
Q 046419 105 LGN-KWARMAAQL 116 (505)
Q Consensus 105 yG~-kWskIAk~L 116 (505)
... .-.+|+..|
T Consensus 106 ~~~~s~~~i~~~l 118 (149)
T 1k78_A 106 NPTMFAWEIRDRL 118 (149)
T ss_dssp CTTCCHHHHHHHH
T ss_pred CcchhHHHHHHHH
Confidence 542 234555554
No 113
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=46.67 E-value=29 Score=27.66 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419 94 EERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 94 ED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~ 135 (505)
++..++.++...|-.-.+||+.| |.+...|+.+....+++.
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34445556555677899999999 899999999887666554
No 114
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=46.17 E-value=3.9 Score=35.31 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=29.6
Q ss_pred HHHHHHHHhCC-------CCcchhccccCCcccccccccccccccCC
Q 046419 44 ILTEYVRKHGE-------GNWNAVQRNTGLARCGKSCRLRWANHLRP 83 (505)
Q Consensus 44 lL~~lV~k~G~-------~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p 83 (505)
+|..+|.+.|. ..|.+||..|+... +..+|..|.++|.+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 57777888875 48999999998544 67777788777753
No 115
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=46.09 E-value=80 Score=27.51 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=29.4
Q ss_pred HHHHHHHhCC--------CHHHHHhhCCC-C----CHHHHHHHHHHHhhhhh
Q 046419 98 IVELHAQLGN--------KWARMAAQLPG-R----TDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 98 LlelV~kyG~--------kWskIAk~Lpg-R----T~~qcKnRW~~llkk~~ 136 (505)
|..+|.+.|+ .|.+||..|.- . ....+|.+|.++|-.--
T Consensus 47 Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 47 FFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp HHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 7788888884 69999999932 1 25678999988776653
No 116
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=46.04 E-value=13 Score=32.59 Aligned_cols=40 Identities=15% Similarity=0.300 Sum_probs=31.6
Q ss_pred HHHHHHHhCC--------CHHHHHhhCCCCCHHHHHHHHHHHhhhhhh
Q 046419 98 IVELHAQLGN--------KWARMAAQLPGRTDNEIKNYWNTRVKRRHR 137 (505)
Q Consensus 98 LlelV~kyG~--------kWskIAk~LpgRT~~qcKnRW~~llkk~~r 137 (505)
|..+|.+.|+ .|.+||+.|.--....+|..|.++|-.-..
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 6677776664 499999998555589999999998887654
No 117
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=41.83 E-value=6.3 Score=33.36 Aligned_cols=40 Identities=15% Similarity=0.300 Sum_probs=28.9
Q ss_pred HHHHHHHHhCC-------CCcchhccccCCccc----ccccccccccccCC
Q 046419 44 ILTEYVRKHGE-------GNWNAVQRNTGLARC----GKSCRLRWANHLRP 83 (505)
Q Consensus 44 lL~~lV~k~G~-------~nW~~IAk~m~~gRT----~kQCR~Rw~n~L~p 83 (505)
+|..+|.+.|. ..|.+|+..|+...+ ..+++..|.++|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777877765 589999999985442 35667778887764
No 118
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=41.46 E-value=23 Score=31.35 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhc
Q 046419 93 EEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKRRHRQ 138 (505)
Q Consensus 93 EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk~~r~ 138 (505)
+-|.+|++++++-|. .|.+||+.+ |-+...|+.|++.+.+...-+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 567888888887764 599999999 999999999999988877644
No 119
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=40.92 E-value=17 Score=33.76 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=19.2
Q ss_pred CCccCCCCHHHHHHH--------HHHHHHhCC
Q 046419 31 QLKKGPWTAAEDAIL--------TEYVRKHGE 54 (505)
Q Consensus 31 ~lkKG~WT~EEDelL--------~~lV~k~G~ 54 (505)
.-.+|-||+|+|+.| .++++|||.
T Consensus 111 ~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 111 PNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp TTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 346899999999987 467888874
No 120
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=40.57 E-value=13 Score=31.26 Aligned_cols=94 Identities=16% Similarity=0.078 Sum_probs=51.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcc-hhccccCCcccccccc-ccccccc---------C--CCCCCCCCCHHHHHHHH
Q 046419 33 KKGPWTAAEDAILTEYVRKHGEGNWN-AVQRNTGLARCGKSCR-LRWANHL---------R--PNLKKGTFSPEEERLIV 99 (505)
Q Consensus 33 kKG~WT~EEDelL~~lV~k~G~~nW~-~IAk~m~~gRT~kQCR-~Rw~n~L---------~--p~lkkg~WT~EED~lLl 99 (505)
++..+|.|+-..+++++.+.|. .-. +||+.+|..++...-. ..+..++ . ....+..-..+-|+.|+
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~-~~~~~~A~~~gvs~stl~~~~~~~~~~~~~~~~~~~~~~~~kr~r~~~~~~~E~~L~ 82 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPD-LRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCRKTNKLSPYDKLEGLLI 82 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTT-SCHHHHHHHHTCCHHHHHHHHHTHHHHHHHHHHHGGGGGTCCCCCCCTTHHHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCC-CcHHHHHHHhCCCHHHHHHHHhchhhhcchhhhccccchhhcccCCCCCHHHHHHHH
Confidence 5678999999999998877665 333 7999987554211100 0000010 0 11122334566688888
Q ss_pred HHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419 100 ELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKR 134 (505)
Q Consensus 100 elV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk 134 (505)
+.|.+... ..++ =|+..|+.++..+...
T Consensus 83 ~Wi~~~~~------~g~p-vs~~~I~~kA~~i~~~ 110 (131)
T 1hlv_A 83 AWFQQIRA------AGLP-VKGIILKEKALRIAEE 110 (131)
T ss_dssp HHHHHHGG------GTCC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------CCCC-CCHHHHHHHHHHHHHH
Confidence 88866442 1222 3555555555555444
No 121
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=40.21 E-value=36 Score=30.40 Aligned_cols=39 Identities=10% Similarity=0.168 Sum_probs=30.0
Q ss_pred HHHHHHHhCC--------CHHHHHhhCCCC-----CHHHHHHHHHHHhhhhh
Q 046419 98 IVELHAQLGN--------KWARMAAQLPGR-----TDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 98 LlelV~kyG~--------kWskIAk~LpgR-----T~~qcKnRW~~llkk~~ 136 (505)
|..+|.+.|+ .|.+||..|.-- ....+|..|.++|-...
T Consensus 69 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE 120 (145)
T 2kk0_A 69 LYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 120 (145)
T ss_dssp HHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 7778888874 699999999432 25789999998887654
No 122
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=38.47 E-value=43 Score=29.09 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=30.2
Q ss_pred HHHHHHHHhCC--------CHHHHHhhCCC--C---CHHHHHHHHHHHhhhhh
Q 046419 97 LIVELHAQLGN--------KWARMAAQLPG--R---TDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 97 lLlelV~kyG~--------kWskIAk~Lpg--R---T~~qcKnRW~~llkk~~ 136 (505)
+|..+|.+.|+ .|.+||..|.- . ....+|..|.++|-.--
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE 108 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYE 108 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 37788888884 69999999932 2 25788999998887653
No 123
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=38.21 E-value=17 Score=29.86 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=26.8
Q ss_pred HHHHHHHhCC--------CHHHHHhhCCCC----CHHHHHHHHHHHhhh
Q 046419 98 IVELHAQLGN--------KWARMAAQLPGR----TDNEIKNYWNTRVKR 134 (505)
Q Consensus 98 LlelV~kyG~--------kWskIAk~LpgR----T~~qcKnRW~~llkk 134 (505)
|..+|.+.|+ .|.+||+.|.-- ....+|..|.++|-.
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 7777777763 699999998432 256788888877654
No 124
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=38.04 E-value=57 Score=24.66 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 90 FSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 90 WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
+++.|-+.| .++ ..|....+||+.+ |-+...|+.+....+++..
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHc
Confidence 556555554 444 5577799999999 8899999998887776653
No 125
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=37.71 E-value=76 Score=27.06 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 046419 87 KGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTR 131 (505)
Q Consensus 87 kg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~l 131 (505)
....+.|+-..++.++. -|....+||+.| |.+...|+...+.+
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~rw~~~~ 72 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSKILGRY 72 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 34689999999999885 577789999999 78888877655543
No 126
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=37.62 E-value=8.3 Score=33.31 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=27.3
Q ss_pred HHHHHHHHhCC-------CCcchhccccCCccc---ccccccccccccC
Q 046419 44 ILTEYVRKHGE-------GNWNAVQRNTGLARC---GKSCRLRWANHLR 82 (505)
Q Consensus 44 lL~~lV~k~G~-------~nW~~IAk~m~~gRT---~kQCR~Rw~n~L~ 82 (505)
+|..+|.+.|. ..|.+|+..|+...+ ..+.|..|.++|.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~ 92 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVY 92 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 57788888875 489999999985443 2345666666664
No 127
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=37.05 E-value=52 Score=26.59 Aligned_cols=47 Identities=15% Similarity=0.216 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 87 KGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 87 kg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
....|+.|-+.|.-++ .|..-.+||+.| |-+...|+.+...++++..
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHC
Confidence 3457887777665544 688899999999 9999999999988887753
No 128
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=36.70 E-value=61 Score=26.15 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhc
Q 046419 89 TFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQ 138 (505)
Q Consensus 89 ~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~r~ 138 (505)
..|+.|-+.|.- + ..|..-.+||+.| |-+...|+.+....+++....
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHcCC
Confidence 466666666554 4 6677899999999 889999999988887776543
No 129
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=36.35 E-value=50 Score=24.80 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHH
Q 046419 92 PEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYW 128 (505)
Q Consensus 92 ~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW 128 (505)
+-|.+.|.++++++++++.+.|+.| |=+...+..+.
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rkl 53 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRKI 53 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3477788999999999999999999 66666555543
No 130
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=34.96 E-value=8.9 Score=33.55 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=27.7
Q ss_pred HHHHHHHHhCC-------CCcchhccccCCccc----ccccccccccccCC
Q 046419 44 ILTEYVRKHGE-------GNWNAVQRNTGLARC----GKSCRLRWANHLRP 83 (505)
Q Consensus 44 lL~~lV~k~G~-------~nW~~IAk~m~~gRT----~kQCR~Rw~n~L~p 83 (505)
+|..+|.++|. ..|.+|+..|+...+ ...+|..|.++|.+
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777888775 589999999985443 23456667776643
No 131
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=34.86 E-value=10 Score=31.31 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=26.0
Q ss_pred HHHHHHHHhCC-------CCcchhccccCCccc---ccccccccccccC
Q 046419 44 ILTEYVRKHGE-------GNWNAVQRNTGLARC---GKSCRLRWANHLR 82 (505)
Q Consensus 44 lL~~lV~k~G~-------~nW~~IAk~m~~gRT---~kQCR~Rw~n~L~ 82 (505)
+|..+|.+.|. ..|.+|+..|+...+ +.++|..|.++|.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 56677777754 489999999985442 2355666766663
No 132
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=34.62 E-value=57 Score=28.51 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=24.4
Q ss_pred CCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 106 GNKWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 106 G~kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
|-...+||+.| |-+...|+.+....+++..
T Consensus 156 g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 156 GLSYEEIAAIM-DCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp CCCHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 55699999999 8999999998877666543
No 133
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=34.23 E-value=69 Score=27.51 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 93 EEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 93 EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
+-|.+|++++++.|. .|.+||+.+ |-+...|+.|.+.+.+...
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 456678888877764 599999999 8899999999998877654
No 134
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=34.15 E-value=9.2 Score=33.35 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=25.8
Q ss_pred HHHHHHHHhCC-------CCcchhccccCCccc---ccccccccccccC
Q 046419 44 ILTEYVRKHGE-------GNWNAVQRNTGLARC---GKSCRLRWANHLR 82 (505)
Q Consensus 44 lL~~lV~k~G~-------~nW~~IAk~m~~gRT---~kQCR~Rw~n~L~ 82 (505)
+|..+|.++|. ..|.+|+..|+...+ ..++|..|.++|.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~ 103 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLF 103 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 56677777765 489999999985432 2345556666553
No 135
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=33.49 E-value=54 Score=25.71 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 89 TFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 89 ~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
.+|+.|-+.|.- + ..|..-.+||+.| |-+...|+.+....+++..
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHc
Confidence 467777666554 4 4677799999999 8999999998887776653
No 136
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=33.40 E-value=58 Score=26.25 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHH
Q 046419 92 PEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWN 129 (505)
Q Consensus 92 ~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~ 129 (505)
.-|.+.|.+++++++++..+.|+.| |=+...+..|.+
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rklk 86 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHHH
Confidence 3477888999999999999999999 777776665543
No 137
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=33.33 E-value=58 Score=24.12 Aligned_cols=46 Identities=9% Similarity=0.096 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 88 GTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 88 g~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
..+++.|-+.|.. + ..|....+||+.+ |-+...|+.+...+.++..
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHC
Confidence 3577777766655 4 4567799999999 8899999998887776653
No 138
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=32.61 E-value=54 Score=29.46 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhhh
Q 046419 92 PEEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKRRHR 137 (505)
Q Consensus 92 ~EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk~~r 137 (505)
.+-|.+|++++.+.|. .|.+||+.+ |-+...|+.|++.+.+...-
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 3566778888887774 599999999 88999999999988777654
No 139
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=32.52 E-value=52 Score=25.99 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=25.5
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 105 LGNKWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 105 yG~kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
.|-.+.+||..+ |-+...|+.+....+++..
T Consensus 37 ~~~s~~EIA~~l-gis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 37 KPKTLEEVGQYF-NVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHB
T ss_pred CCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 456799999999 9999999998877666653
No 140
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=32.24 E-value=1e+02 Score=20.18 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHH
Q 046419 89 TFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYW 128 (505)
Q Consensus 89 ~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW 128 (505)
..+.++...++.++ .-|....+||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45677776777766 4577799999999 88888777654
No 141
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=31.84 E-value=23 Score=29.85 Aligned_cols=38 Identities=13% Similarity=0.356 Sum_probs=27.8
Q ss_pred HHHHHHHhCC--------CHHHHHhhCCCC-----CHHHHHHHHHHHhhhh
Q 046419 98 IVELHAQLGN--------KWARMAAQLPGR-----TDNEIKNYWNTRVKRR 135 (505)
Q Consensus 98 LlelV~kyG~--------kWskIAk~LpgR-----T~~qcKnRW~~llkk~ 135 (505)
|..+|.+.|+ .|.+||..|.-- ....+|..|.++|-.-
T Consensus 38 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 38 MFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 7777777773 699999998421 2467899998877653
No 142
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=31.34 E-value=12 Score=32.50 Aligned_cols=38 Identities=24% Similarity=0.454 Sum_probs=25.1
Q ss_pred HHHHHHHHhCC-------CCcchhccccCCccc---cccccccccccc
Q 046419 44 ILTEYVRKHGE-------GNWNAVQRNTGLARC---GKSCRLRWANHL 81 (505)
Q Consensus 44 lL~~lV~k~G~-------~nW~~IAk~m~~gRT---~kQCR~Rw~n~L 81 (505)
+|..+|.++|. ..|.+|+..|+...+ +...|..|.++|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L 93 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERIL 93 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 56777888875 489999999984432 124455555554
No 143
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=30.32 E-value=10 Score=31.86 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=25.5
Q ss_pred HHHHHHHHhCC-------CCcchhccccCCccc---cccccccccccc
Q 046419 44 ILTEYVRKHGE-------GNWNAVQRNTGLARC---GKSCRLRWANHL 81 (505)
Q Consensus 44 lL~~lV~k~G~-------~nW~~IAk~m~~gRT---~kQCR~Rw~n~L 81 (505)
+|..+|.+.|. ..|.+|+..|+...+ ..+.|..|.++|
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L 95 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERIL 95 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 56777888875 489999999984432 234455555554
No 144
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=30.21 E-value=74 Score=22.81 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 95 ERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 95 D~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
+..++.++ ..|-.-.+||+.| |-+...|+.+...++++..
T Consensus 3 e~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 3 ERQVLKLI-DEGYTNHGISEKL-HISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHHHHHHH-HTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHC
Confidence 44455553 5577789999999 8999999999888777654
No 145
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=30.19 E-value=73 Score=26.78 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHH
Q 046419 91 SPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKN 126 (505)
Q Consensus 91 T~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKn 126 (505)
++.-+..|..+....|..|.++|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 66677788888899999999999999 666655533
No 146
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=28.44 E-value=17 Score=32.64 Aligned_cols=40 Identities=20% Similarity=0.395 Sum_probs=27.6
Q ss_pred HHHHHHHHhCC-------CCcchhccccCCccc----ccccccccccccCC
Q 046419 44 ILTEYVRKHGE-------GNWNAVQRNTGLARC----GKSCRLRWANHLRP 83 (505)
Q Consensus 44 lL~~lV~k~G~-------~nW~~IAk~m~~gRT----~kQCR~Rw~n~L~p 83 (505)
+|..+|.+.|. ..|.+|+..|+...+ ...+|..|.++|.+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 46666777765 589999999985442 34566777777754
No 147
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=27.90 E-value=80 Score=27.21 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhhh
Q 046419 93 EEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKRRHR 137 (505)
Q Consensus 93 EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk~~r 137 (505)
+-|.+|++++.+.|. .+.+||+.+ |-+...|+.|.+.+.+...-
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 51 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 446678888877764 699999999 88999999999988777653
No 148
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=27.14 E-value=84 Score=28.17 Aligned_cols=30 Identities=10% Similarity=-0.010 Sum_probs=23.8
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419 105 LGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 105 yG~kWskIAk~LpgRT~~qcKnRW~~llkk~ 135 (505)
.|-...+||+.| |-+...|+.+....+++.
T Consensus 202 ~g~s~~EIA~~l-gis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 202 EELPAKEVAKIL-ETSVSRVSQLKAKALERL 231 (239)
T ss_dssp SCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 356799999999 899999988877655544
No 149
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=26.91 E-value=1.1e+02 Score=25.55 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419 95 ERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 95 D~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~ 135 (505)
+..++.++...|-...+||+.+ |-+...|+.+....+++.
T Consensus 30 ~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 30 QRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3445555555677899999999 889999988876655544
No 150
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=26.10 E-value=76 Score=26.52 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=23.6
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419 105 LGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 105 yG~kWskIAk~LpgRT~~qcKnRW~~llkk~ 135 (505)
.|-...+||+.| |-+...|+.+....+++.
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 345689999999 899999998887655554
No 151
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=25.04 E-value=69 Score=25.93 Aligned_cols=36 Identities=8% Similarity=0.024 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHH
Q 046419 91 SPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNY 127 (505)
Q Consensus 91 T~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnR 127 (505)
.+-|.+.|.+++++++.+..+.|+.| |=+...+..|
T Consensus 39 ~~~Er~~I~~aL~~~~GN~s~AA~~L-GISR~TLyrK 74 (81)
T 1umq_A 39 DRVRWEHIQRIYEMCDRNVSETARRL-NMHRRTLQRI 74 (81)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHH-TSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHHH
Confidence 34567778899999999999999999 7776666543
No 152
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=25.04 E-value=79 Score=27.16 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCHHHHHhhCCCCCHHHH
Q 046419 97 LIVELHAQLGNKWARMAAQLPGRTDNEI 124 (505)
Q Consensus 97 lLlelV~kyG~kWskIAk~LpgRT~~qc 124 (505)
.|..+.+..|..|..+|+.| |=+..+|
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dI 52 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 46666788999999999999 5444443
No 153
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=25.00 E-value=27 Score=26.35 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhCCCCcchhccccCCccc
Q 046419 39 AAEDAILTEYVRKHGEGNWNAVQRNTGLARC 69 (505)
Q Consensus 39 ~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT 69 (505)
.-|.+.|.+++++++. ++.+.|+.+|..|+
T Consensus 18 ~~E~~~i~~aL~~~~g-n~~~aA~~LGisr~ 47 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDY-DLKRTAEEIGIDLS 47 (63)
T ss_dssp HHHHHHHHHHHHHTTT-CHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHCcCHH
Confidence 3577888898988886 99999999986654
No 154
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=24.93 E-value=38 Score=29.46 Aligned_cols=31 Identities=19% Similarity=0.098 Sum_probs=24.6
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 105 LGNKWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 105 yG~kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
.|-.+.+||+.| |-+...|+.+....+++..
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 355688999999 8899999999887766653
No 155
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=24.80 E-value=47 Score=28.78 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 95 ERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 95 D~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
+..++.+....|-.-.+||+.| |-+...|+.+....+++..
T Consensus 98 ~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~Lr 138 (157)
T 2lfw_A 98 SRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAEIE 138 (157)
T ss_dssp HHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 3344444444566789999999 8999999999876665543
No 156
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.63 E-value=73 Score=25.23 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 89 TFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 89 ~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
..|+.|-+.|.- + ..|..-.+||+.| |-+...|+.+....+++..
T Consensus 29 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILLL-I-AKGYSNQEIASAS-HITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHH-H-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHC
Confidence 456666666554 4 5677789999999 8999999999887777654
No 157
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=24.26 E-value=1.1e+02 Score=25.18 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 87 KGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 87 kg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
....|+.|-+.|.- +. .|..-.+||+.| |-+...|+.+...++++..
T Consensus 32 ~~~Lt~re~~Vl~l-~~-~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-FA-EGFLVTEIAKKL-NRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHH-HH-HTCCHHHHHHHH-TSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHH-HH-cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHC
Confidence 34578888777654 43 577899999999 8899999999888777753
No 158
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=23.02 E-value=75 Score=27.13 Aligned_cols=29 Identities=24% Similarity=0.536 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHH
Q 046419 95 ERLIVELHAQLGNKWARMAAQLPGRTDNEI 124 (505)
Q Consensus 95 D~lLlelV~kyG~kWskIAk~LpgRT~~qc 124 (505)
|..|..+.+..|..|..+|+.| |=+..+|
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I 41 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREV 41 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHH
Confidence 3457777788999999999999 6555544
No 159
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=22.70 E-value=1.1e+02 Score=26.16 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 93 EEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 93 EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
+-|.+|++++.+.|. .+.+||+.+ |-+...|+.|.+.+.+...
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 51 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQF-GVSPETIHVRVEKMKQAGI 51 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHcCC
Confidence 446678888887764 599999999 8899999999998877764
No 160
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=22.69 E-value=76 Score=27.22 Aligned_cols=34 Identities=29% Similarity=0.518 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHH
Q 046419 87 KGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEI 124 (505)
Q Consensus 87 kg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qc 124 (505)
...=|.+ .|..+.+..|..|..+|+.| |=+..+|
T Consensus 19 ~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dI 52 (114)
T 2of5_A 19 NSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (114)
T ss_dssp TSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHH
T ss_pred cCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 3334444 45566788899999999999 5544443
No 161
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=21.63 E-value=1.5e+02 Score=23.83 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHhC---C-CHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419 91 SPEEERLIVELHAQLG---N-KWARMAAQLPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 91 T~EED~lLlelV~kyG---~-kWskIAk~LpgRT~~qcKnRW~~llkk~ 135 (505)
+.+-|++|++++.+.+ . .=.+||+.| |-+...|+.+-..+.+..
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~L-gvsr~tV~~~L~~Le~~G 55 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKKG 55 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHH-TCCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 3466788999999988 3 479999999 788888888877666544
No 162
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=21.53 E-value=1.2e+02 Score=26.46 Aligned_cols=43 Identities=5% Similarity=0.032 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419 93 EEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKRRH 136 (505)
Q Consensus 93 EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk~~ 136 (505)
+-|.+|++++.+.|. .+.+||+.+ |-+...|+.|.+.+.+..+
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 53 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERV-ALSPSPCLRRLKQLEDAGI 53 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 456677888877764 699999999 8899999999998877654
No 163
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.20 E-value=2.8e+02 Score=21.26 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=40.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhC--CC--HHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419 81 LRPNLKKGTFSPEEERLIVELHAQLG--NK--WARMAAQLPGRTDNEIKNYWNTRVKRR 135 (505)
Q Consensus 81 L~p~lkkg~WT~EED~lLlelV~kyG--~k--WskIAk~LpgRT~~qcKnRW~~llkk~ 135 (505)
.++...+..+|.+.-..|...+.+.. .. =..||+.+ |=+..+|+.+|.+...+.
T Consensus 6 ~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqNrR~k~ 63 (76)
T 2dn0_A 6 SGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT-GLSTREVRKWFSDRRYHC 63 (76)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH-CCCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CCChHHhhHHhHHHhHHH
Confidence 45566678899999999998887633 22 35678888 899999999887654443
No 164
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=20.63 E-value=38 Score=29.22 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCC--CCCCCCHHHHHHHH--------HHHHHhCCCHHH
Q 046419 42 DAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNL--KKGTFSPEEERLIV--------ELHAQLGNKWAR 111 (505)
Q Consensus 42 DelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~l--kkg~WT~EED~lLl--------elV~kyG~kWsk 111 (505)
-++|+.++.++.. +-..|.+.+- ++.-....--.-++.+.. -.-.|+.++|..|. +|++|||. ..
T Consensus 14 ~~~i~~lMeef~~-DL~sVTqAlL--K~SGel~at~~fL~~~~r~dg~PiWsr~DD~~Lqk~D~~~R~qL~~KfG~--en 88 (111)
T 3k6g_A 14 IKIIRQLMEKFNL-DLSTVTQAFL--KNSGELEATSAFLASGQRADGYPIWSRQDDIDLQKDDEDTREALVKKFGA--QN 88 (111)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHH--HTTTCHHHHHHHHHHSSCTTSCCCCCHHHHHHHTCCCHHHHHHHHHHHCH--HH
T ss_pred HHHHHHHHHHHhh-hHHHHHHHHH--HccccHHHHHHHHhCCCcCCCCcceeeccHHHHhcCCHHHHHHHHHHHhh--HH
Confidence 4567788888887 7777776653 444443321111233321 22359999998876 67889994 34
Q ss_pred HHhhC
Q 046419 112 MAAQL 116 (505)
Q Consensus 112 IAk~L 116 (505)
||+++
T Consensus 89 VAkRi 93 (111)
T 3k6g_A 89 VARRI 93 (111)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 165
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=20.45 E-value=88 Score=27.22 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=43.7
Q ss_pred CCccCCCCHHHHHHHHHHH-HHhCCCCcchhcc----cc--CCcccccc----cccccccccC-----CCCCCCCCCHHH
Q 046419 31 QLKKGPWTAAEDAILTEYV-RKHGEGNWNAVQR----NT--GLARCGKS----CRLRWANHLR-----PNLKKGTFSPEE 94 (505)
Q Consensus 31 ~lkKG~WT~EEDelL~~lV-~k~G~~nW~~IAk----~m--~~gRT~kQ----CR~Rw~n~L~-----p~lkkg~WT~EE 94 (505)
..+|...|-+|-..|++.+ +.++...-.+||+ .+ +..|+-.+ .++.|..... ....+..=.+|=
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~~l~~~~~~~~~~kr~r~~~~~~l 85 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYSYLDNTVEKPWDVKRNRPPKYPLL 85 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHHHTTTSCSSSSSSSCCCCCSCHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHHHhhhcccccccccCCCCCCCHHH
Confidence 4578899999999999988 5666544456777 56 43443221 1222222211 111223345788
Q ss_pred HHHHHHHHHH
Q 046419 95 ERLIVELHAQ 104 (505)
Q Consensus 95 D~lLlelV~k 104 (505)
|+.|++.+.+
T Consensus 86 e~~L~~Wi~~ 95 (144)
T 1iuf_A 86 EAALFEWQVQ 95 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888877
No 166
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=20.42 E-value=1.1e+02 Score=25.77 Aligned_cols=30 Identities=30% Similarity=0.515 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 046419 95 ERLIVELHAQLGNKWARMAAQLPGRTDNEIK 125 (505)
Q Consensus 95 D~lLlelV~kyG~kWskIAk~LpgRT~~qcK 125 (505)
++.|..+....|..|..+|++| |=+..+|.
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~ 47 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIR 47 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHH
Confidence 3445566677899999999999 65555553
Done!