BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046420
MNGRQGVQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSAWLQHLQQSSATGTIPPLQV
SIFEVLSLF

High Scoring Gene Products

Symbol, full name Information P value
AT3G16060 protein from Arabidopsis thaliana 2.2e-06

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046420
        (69 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2093382 - symbol:AT3G16060 species:3702 "Arabi...   120  2.2e-06   1


>TAIR|locus:2093382 [details] [associations]
            symbol:AT3G16060 species:3702 "Arabidopsis thaliana"
            [GO:0003777 "microtubule motor activity" evidence=IEA;ISS]
            [GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=ISM] [GO:0007018 "microtubule-based movement"
            evidence=IEA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] InterPro:IPR001752
            InterPro:IPR019821 Pfam:PF00225 PRINTS:PR00380 PROSITE:PS00411
            PROSITE:PS50067 SMART:SM00129 GO:GO:0005886 GO:GO:0005524
            GO:GO:0005634 EMBL:CP002686 GO:GO:0005875 eggNOG:COG5059
            GO:GO:0005874 GO:GO:0003777 GO:GO:0007018 Gene3D:3.40.850.10
            HSSP:P17119 KO:K10393 EMBL:AY052352 EMBL:AY059654 IPI:IPI00525040
            RefSeq:NP_566534.1 UniGene:At.26497 ProteinModelPortal:Q940Y8
            SMR:Q940Y8 IntAct:Q940Y8 STRING:Q940Y8 PaxDb:Q940Y8 PRIDE:Q940Y8
            EnsemblPlants:AT3G16060.1 GeneID:820851 KEGG:ath:AT3G16060
            TAIR:At3g16060 InParanoid:Q940Y8 OMA:ILHITIV PhylomeDB:Q940Y8
            ProtClustDB:CLSN2688434 Genevestigator:Q940Y8 Uniprot:Q940Y8
        Length = 684

 Score = 120 (47.3 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 30/50 (60%), Positives = 32/50 (64%)

Query:     1 MNGRQGVQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSAWLQHLQQSS 50
             M+GRQ   RS AA V  HHQRQ S      SSSNGRWLQS  LQH Q S+
Sbjct:     1 MSGRQ---RSVAAAV--HHQRQLSDNPLDMSSSNGRWLQSTGLQHFQSSA 45


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.126   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       69        69   0.00091  102 3  11 22  0.46    28
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  518 (55 KB)
  Total size of DFA:  104 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.67u 0.13s 8.80t   Elapsed:  00:00:01
  Total cpu time:  8.67u 0.13s 8.80t   Elapsed:  00:00:01
  Start:  Sat May 11 11:22:23 2013   End:  Sat May 11 11:22:24 2013

Back to top