BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046420
         (69 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G0R|A Chain A, Structural Characterization Of H-1 Parvovirus: Comparison
           Of Infectious Virions To Replication Defective Particles
 pdb|4GBT|A Chain A, Structural Characterization Of H-1 Parvovirus: Comparison
           Of Infectious Virions To Replication Defective Particles
          Length = 735

 Score = 27.7 bits (60), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 5   QGVQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSAWLQHLQQSSATGTIPPLQVSIFE 64
            G +  G       HQ+ W+    +++++ G W Q +  Q +Q S  +  +  L   +F 
Sbjct: 235 HGTKVKGNMAYDDTHQQIWTPWSLVDANAWGVWFQPSDWQFIQNSMESLNLDSLSQELFN 294

Query: 65  VL 66
           V+
Sbjct: 295 VV 296


>pdb|3CXB|B Chain B, Crystal Structure Of Sifa And Skip
          Length = 112

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 1   MNGRQ--GVQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSAWLQHLQQSSATGTIP 56
           M G Q  G +R+         Q   S    LE S+      + W+QHL Q+ + G IP
Sbjct: 49  MGGEQCGGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKGVIP 106


>pdb|4AB4|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
           Putida In Complex With Tnt
 pdb|4AB4|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
           Putida In Complex With Tnt
 pdb|4AEO|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
           Putida In Complex With Tnt
 pdb|4AEO|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
           Putida In Complex With Tnt
          Length = 362

 Score = 27.3 bits (59), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 2   NGRQGVQRSGAAGVQVHHQRQWSSEKFLESSSNGR 36
           +G +  + +G  GV++H    +  ++FL+SS+N R
Sbjct: 157 SGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQR 191


>pdb|3LGK|A Chain A, D99n Epi-Isozizaene Synthase
          Length = 382

 Score = 25.8 bits (55), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 5   QGVQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSAW 42
           +G + SGA    V + R W S  +     +GR++  +W
Sbjct: 328 RGKELSGAVRANVGNMRNWFSSVYWFHHESGRYMVDSW 365


>pdb|3LG5|A Chain A, F198a Epi-Isozizaene Synthase: Complex With Mg, Inorganic
           Pyrophosphate And Benzyl Triethyl Ammonium Cation
          Length = 381

 Score = 25.8 bits (55), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 5   QGVQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSAW 42
           +G + SGA    V + R W S  +     +GR++  +W
Sbjct: 327 RGKELSGAVRANVGNMRNWFSSVYWFHHESGRYMVDSW 364


>pdb|3KB9|A Chain A, Epi-Isozizaene Synthase: Complex With Mg, Inorganic
           Pyrophosphate And Benzyl Triethyl Ammonium Cation
 pdb|3KBK|A Chain A, Epi-Isozizaene Synthase Complexed With Hg
          Length = 382

 Score = 25.8 bits (55), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 5   QGVQRSGAAGVQVHHQRQWSSEKFLESSSNGRWLQSAW 42
           +G + SGA    V + R W S  +     +GR++  +W
Sbjct: 328 RGKELSGAVRANVGNMRNWFSSVYWFHHESGRYMVDSW 365


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.126    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,048,745
Number of Sequences: 62578
Number of extensions: 55096
Number of successful extensions: 159
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 7
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)