Query 046420
Match_columns 69
No_of_seqs 12 out of 14
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 21:01:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hmz_A Flavin reductase domain 11.7 49 0.0017 21.4 0.0 7 17-23 2-8 (199)
2 2xl1_A Arginine attenuator pep 10.6 84 0.0029 16.3 0.7 6 1-6 1-6 (26)
3 1zl8_A LIN-7; heterodimer, alp 9.0 1.1E+02 0.0038 18.0 0.9 13 43-58 16-28 (53)
4 1iuj_A Hypothetical protein TT 8.9 1.6E+02 0.0053 15.9 1.4 32 36-67 64-99 (106)
5 3ugs_B Undecaprenyl pyrophosph 7.1 1.2E+02 0.0041 21.3 0.5 14 32-45 15-28 (225)
6 2xtc_A F-box-like/WD repeat-co 6.0 1.2E+02 0.004 18.8 -0.0 10 36-45 14-23 (90)
7 2p1l_B Beclin 1; apoptosis, au 5.9 1E+02 0.0035 15.8 -0.3 6 62-67 18-23 (31)
8 1n7v_A Adsorption protein P2; 5.8 1.7E+02 0.0057 23.6 0.7 16 25-40 20-36 (555)
9 1rij_A E6APN1 peptide; Trp-CAG 5.8 1.3E+02 0.0045 15.5 0.1 9 35-43 7-15 (26)
10 3syx_A Sprouty-related, EVH1 d 5.7 1.3E+02 0.0044 19.7 0.0 10 33-42 26-35 (130)
No 1
>3hmz_A Flavin reductase domain protein, FMN-binding; FMN-binding domain of flavin reductases-like enzyme, structu genomics; HET: MSE FMN; 1.50A {Shewanella baltica}
Probab=11.69 E-value=49 Score=21.37 Aligned_cols=7 Identities=57% Similarity=0.904 Sum_probs=0.0
Q ss_pred eehhhhc
Q 046420 17 VHHQRQW 23 (69)
Q Consensus 17 vHHQRQ~ 23 (69)
.|||||-
T Consensus 2 ~~~~~~~ 8 (199)
T 3hmz_A 2 MHHQRKT 8 (199)
T ss_dssp -------
T ss_pred ccchhhh
Confidence 6888874
No 2
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=10.59 E-value=84 Score=16.25 Aligned_cols=6 Identities=67% Similarity=1.088 Sum_probs=4.4
Q ss_pred CCCccc
Q 046420 1 MNGRQG 6 (69)
Q Consensus 1 mnGRq~ 6 (69)
||||..
T Consensus 1 mngrps 6 (26)
T 2xl1_A 1 MNGRPS 6 (26)
T ss_pred CCCCCc
Confidence 888854
No 3
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=8.96 E-value=1.1e+02 Score=18.02 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=9.5
Q ss_pred hhhhhhccCCCCCCCe
Q 046420 43 LQHLQQSSATGTIPPL 58 (69)
Q Consensus 43 lqhlq~s~~~G~~~~~ 58 (69)
+.+||.| |.|||-
T Consensus 16 le~lq~s---gevp~~ 28 (53)
T 1zl8_A 16 MEHVQKT---GEVNNA 28 (53)
T ss_dssp HHHHGGG---SSSTHH
T ss_pred HHHHHHc---CCCCcH
Confidence 5677766 899984
No 4
>1iuj_A Hypothetical protein TT1380; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.60A {Thermus thermophilus} SCOP: d.58.4.5
Probab=8.87 E-value=1.6e+02 Score=15.87 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=17.3
Q ss_pred cchhhhhhhhhhhccC----CCCCCCeeeeheehhc
Q 046420 36 RWLQSAWLQHLQQSSA----TGTIPPLQVSIFEVLS 67 (69)
Q Consensus 36 RWlQSaglqhlq~s~~----~G~~~~~~~~~~~~~~ 67 (69)
.|++|.-++.+..... .--..|..+..||++.
T Consensus 64 a~~~s~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~ 99 (106)
T 1iuj_A 64 AWTESPAFKEGHARSGTLPKEAFLGPNRLEAFEVVL 99 (106)
T ss_dssp HHHTSHHHHHHTTTTSSSSCSCBSSCCEEEEEEEEE
T ss_pred HHhcCHHHHHHHhccccCCcccccCCCceEEEEEEE
Confidence 5666666655544433 1123345677777753
No 5
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=7.05 E-value=1.2e+02 Score=21.34 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=3.3
Q ss_pred CCCCcchhhhhhhh
Q 046420 32 SSNGRWLQSAWLQH 45 (69)
Q Consensus 32 ssnGRWlQSaglqh 45 (69)
++||||-..-|+..
T Consensus 15 DGNrRwAk~rgl~r 28 (225)
T 3ugs_B 15 DGNRRWARAKGFLA 28 (225)
T ss_dssp CCCC----------
T ss_pred cCcHHHHHHCCCCH
Confidence 58999998877654
No 6
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=5.99 E-value=1.2e+02 Score=18.85 Aligned_cols=10 Identities=40% Similarity=0.700 Sum_probs=8.7
Q ss_pred cchhhhhhhh
Q 046420 36 RWLQSAWLQH 45 (69)
Q Consensus 36 RWlQSaglqh 45 (69)
|.||-+|+.|
T Consensus 14 RYLqEsGf~h 23 (90)
T 2xtc_A 14 RYLQESGFSH 23 (90)
T ss_dssp HHHHHTTCHH
T ss_pred HHHHHcCCHH
Confidence 7789999988
No 7
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=5.91 E-value=1e+02 Score=15.84 Aligned_cols=6 Identities=33% Similarity=1.143 Sum_probs=3.6
Q ss_pred heehhc
Q 046420 62 IFEVLS 67 (69)
Q Consensus 62 ~~~~~~ 67 (69)
||++||
T Consensus 18 lFdILS 23 (31)
T 2p1l_B 18 LFDIMS 23 (31)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 566665
No 8
>1n7v_A Adsorption protein P2; bacteriophage PRD1, viral receptor-binding, beta-propeller, proline-rich, antibiotic-resistance, viral protein; 2.20A {Enterobacteria phage PRD1} SCOP: b.126.1.1 PDB: 1n7u_A
Probab=5.80 E-value=1.7e+02 Score=23.59 Aligned_cols=16 Identities=44% Similarity=0.694 Sum_probs=10.7
Q ss_pred ccccccCCCCC-cchhh
Q 046420 25 SEKFLESSSNG-RWLQS 40 (69)
Q Consensus 25 dnnfld~ssnG-RWlQS 40 (69)
||-..|+|..| |||-|
T Consensus 20 dnvp~dss~tgsrwlps 36 (555)
T 1n7v_A 20 DNVPEDSSATGSRWLPS 36 (555)
T ss_dssp CSSCCCBTTTCCSSSCB
T ss_pred cCCcccccccccccchh
Confidence 33445666667 99976
No 9
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=5.76 E-value=1.3e+02 Score=15.47 Aligned_cols=9 Identities=33% Similarity=0.833 Sum_probs=5.7
Q ss_pred Ccchhhhhh
Q 046420 35 GRWLQSAWL 43 (69)
Q Consensus 35 GRWlQSagl 43 (69)
|.||..+|-
T Consensus 7 gqwlkdggp 15 (26)
T 1rij_A 7 GQWLKDGGP 15 (26)
T ss_dssp HHHHHTTGG
T ss_pred HHHHHcCCC
Confidence 567766664
No 10
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=5.74 E-value=1.3e+02 Score=19.73 Aligned_cols=10 Identities=40% Similarity=0.704 Sum_probs=7.6
Q ss_pred CCCcchhhhh
Q 046420 33 SNGRWLQSAW 42 (69)
Q Consensus 33 snGRWlQSag 42 (69)
++++|+..+|
T Consensus 26 ~tk~WlP~gg 35 (130)
T 3syx_A 26 SSGGWLPLGG 35 (130)
T ss_dssp SSSCEEESSS
T ss_pred CCCceEeCCC
Confidence 6678998764
Done!