BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046424
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 307 bits (786), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 156/267 (58%), Positives = 194/267 (72%), Gaps = 3/267 (1%)
Query: 1 MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASP-TQLSS 59
MGS + Q+ DE+ L AM+LAS +VLPM +KSA EL LLEI+AKA P Q+S
Sbjct: 1 MGS-TGETQITPTHISDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISP 59
Query: 60 SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
EIASQLPT N AP++LDRMLRLLA Y LTC++ + +DG VQRLYGL V+KY V N+
Sbjct: 60 IEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 119
Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
DGVS++ L+ QD+V M+SW KDA+L+G +PF KA+ GM F D R N +FN+
Sbjct: 120 DGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNK 178
Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
M +H+TI MK+ILE Y GFEGL LVDV GG GA + +IVSKYP ++GINFDLPHV++
Sbjct: 179 GMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED 238
Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
APS PGVEHVGGDMFV +PK A+FMK
Sbjct: 239 APSYPGVEHVGGDMFVSIPKADAVFMK 265
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 284 bits (727), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 147/269 (54%), Positives = 192/269 (71%), Gaps = 4/269 (1%)
Query: 1 MGSLQD-DHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQ--L 57
MGS + + Q++ + DE+ L AM+LAS AVLPM +K+A EL +LEIMAK+ P +
Sbjct: 1 MGSTGNAEIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYI 60
Query: 58 SSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP 117
S +EIA+QLPT N +AP++LDR+LRLLASYS +T L G V+RLYGL PV K+
Sbjct: 61 SPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTK 120
Query: 118 NKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLF 177
N+DGVSLAP LL+ D+V ++ W KDA+LEG +PF KA+ GM+ F D RIN +F
Sbjct: 121 NEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAY-GMNIFDYHGTDHRINKVF 179
Query: 178 NQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVL 237
N+ M +++TI MK+ILE+Y GFEGL +VDV GG GA IV+KYP + INFDLPHV+
Sbjct: 180 NKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVI 239
Query: 238 KHAPSCPGVEHVGGDMFVEVPKGQAIFMK 266
+ AP+ GVEH+GGDMF VPKG AIF+K
Sbjct: 240 QDAPAFSGVEHLGGDMFDGVPKGDAIFIK 268
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 275 bits (704), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 135/267 (50%), Positives = 183/267 (68%), Gaps = 6/267 (2%)
Query: 1 MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSS 60
MGS D + + DE + A++LAS +VLPMT+K+A ELGLLEI+ A L+ +
Sbjct: 5 MGSTAAD----MAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPT 60
Query: 61 EIASQLPTN-NKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
E+A++LP+ N +AP ++DR+LRLLASY+ +TC + KDG + R YG PV K+ PN+
Sbjct: 61 EVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNE 120
Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
DGVS+A L+ QD+V M+SW KDA+L+G +PF KA+ GM F D R N +FN+
Sbjct: 121 DGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAY-GMSAFEYHGTDPRFNRVFNE 179
Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
M NH+ I+ K++LE+Y GFEGL LVDV GG+GA + +I + YP ++G+NFDLPHV+
Sbjct: 180 GMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISE 239
Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
AP PGV HVGGDMF EVP G I MK
Sbjct: 240 APQFPGVTHVGGDMFKEVPSGDTILMK 266
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 212 bits (539), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/267 (43%), Positives = 166/267 (62%), Gaps = 5/267 (1%)
Query: 5 QDDHQVMLKPARDEQDFLL-AMELASGAVLPMTIKSATELGLLEIMAKASP--TQLSSSE 61
++D+Q+ + E L AM L + V P + +A +L L EI+AKA+P +S SE
Sbjct: 8 KEDNQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSE 67
Query: 62 IASQLP--TNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
IAS+LP T + P LDRMLRLLASYS LT + +DG +R+YGL+ V KY VP++
Sbjct: 68 IASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDE 127
Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
LA + + W K+A+++ + K +G+ + KD+++N +FN+
Sbjct: 128 SRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNK 187
Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
SM + MK +LEIY GFEG++ LVDV GG G NL+ I+SKYP ++GINFDLP V+++
Sbjct: 188 SMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN 247
Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
AP G+EHVGGDMF VP+G A+ +K
Sbjct: 248 APPLSGIEHVGGDMFASVPQGDAMILK 274
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/267 (41%), Positives = 157/267 (58%), Gaps = 5/267 (1%)
Query: 5 QDDHQVMLKPARDEQDFLL-AMELASGAVLPMTIKSATELGLLEIMAKASP--TQLSSSE 61
++D+Q+ + E L A L + V P + +A +L L EI+AKA+P S SE
Sbjct: 8 KEDNQISATSEQTEDSACLSAXVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFXSPSE 67
Query: 62 IASQLP--TNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
IAS+LP T + P LDR LRLLASYS LT + +DG +R+YGL+ V KY VP++
Sbjct: 68 IASKLPASTQHSDLPNRLDRXLRLLASYSVLTSTTRTIEDGGAERVYGLSXVGKYLVPDE 127
Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
LA + + W K+A+++ + K +G+ + KD++ N +FN+
Sbjct: 128 SRGYLASFTTFLCYPALLQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNK 187
Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
S + K LEIY GFEG++ LVDV GG G NL+ I+SKYP ++GINFDLP V+++
Sbjct: 188 SXVDVCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN 247
Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
AP G+EHVGGD F VP+G A +K
Sbjct: 248 APPLSGIEHVGGDXFASVPQGDAXILK 274
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 113/234 (48%), Gaps = 8/234 (3%)
Query: 35 MTIKSATELGLLEIMAK-ASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93
M++K + E+ + I+ P LS+ Q+P+ + R++R LA F
Sbjct: 31 MSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPSTKVDN---VQRLMRYLAHNGFF--E 85
Query: 94 LVSNKD-GSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSV 152
+++N++ + + Y LT S+ V + + LAP + + D S+ K + E +
Sbjct: 86 IITNQELENEEEAYALTVASELLVKGTE-LCLAPMVECVLDPTLSTSFHNLKKWVYEEDL 144
Query: 153 PFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGL 212
+ G D + K+ N L+N ++ + + ++ + + FEGL +VDV GG
Sbjct: 145 TLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAMKDCNLVFEGLESIVDVGGGN 204
Query: 213 GANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK 266
G K I +P+L + FD P V+++ + +VGGDMF+ VPK A+ +K
Sbjct: 205 GTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGGDMFISVPKADAVLLK 258
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 108/233 (46%), Gaps = 11/233 (4%)
Query: 35 MTIKSATELGLLEIMAK-ASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93
M++K A E+ + I+ P LS+ Q+P++ + R++R LA F
Sbjct: 31 MSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGN---VRRLMRYLAHNGFF--E 85
Query: 94 LVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVP 153
+++ ++ S Y LT S+ V D + LAP + + D S+ K + E +
Sbjct: 86 IITKEEES----YALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLT 140
Query: 154 FMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLG 213
G + K+ N FN +M + + ++ + + F+GL +VDV GG G
Sbjct: 141 LFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTG 200
Query: 214 ANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK 266
K I +P+L+ I FD P V+++ + +VGGDMF +P A+ +K
Sbjct: 201 TTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLK 253
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 11/232 (4%)
Query: 36 TIKSATELGLLEIMAK-ASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNL 94
++K A E + I+ P LS+ Q+P++ + R+ R LA F +
Sbjct: 32 SLKWAVEXNIPNIIQNHGKPISLSNLVSILQVPSSKIGN---VRRLXRYLAHNGFF--EI 86
Query: 95 VSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPF 154
++ ++ S Y LT S+ V D + LAP + + D S+ K + E +
Sbjct: 87 ITKEEES----YALTVASELLVRGSD-LCLAPXVECVLDPTLSGSYHELKKWIYEEDLTL 141
Query: 155 MKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGA 214
G + K+ N FN + + + ++ + + F+GL +VDV GG G
Sbjct: 142 FGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLALRDCDFVFDGLESIVDVGGGTGT 201
Query: 215 NLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK 266
K I +P+L+ I FD P V+++ + +VGGD F +P A+ +K
Sbjct: 202 TAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIPNADAVLLK 253
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 111/246 (45%), Gaps = 20/246 (8%)
Query: 32 VLPMTIKSATELGLLE-IMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFL 90
V M +KSA ELG+ + I P LS E+AS L + K I L R LRLL F
Sbjct: 22 VSSMALKSAMELGIADAIHNHGKPMTLS--ELASSLKLHPSKVNI-LHRFLRLLTHNGFF 78
Query: 91 TCNLVSNKDGSVQRL--YGLTPVSKYFVPNKDGVSLAPTLL--IIQDQVN---MDSWSCA 143
+V K+G + Y LTP SK + K PT L I++ ++ +D WS +
Sbjct: 79 AKTIVKGKEGDEEEEIAYSLTPPSKLLISGK------PTCLSSIVKGALHPSSLDMWSSS 132
Query: 144 KDALLEG-SVPFMKAHNGMDGFAAAAKDERINNL--FNQSMHNHTTIVMKEILEIYKGFE 200
K E + G + KD + L F +M + + + + E + FE
Sbjct: 133 KKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFE 192
Query: 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKG 260
GL LVDV GG G K I +P L+ FD P V+ + + VGGDMF +P
Sbjct: 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSA 252
Query: 261 QAIFMK 266
A+ +K
Sbjct: 253 DAVLLK 258
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 111/246 (45%), Gaps = 20/246 (8%)
Query: 32 VLPMTIKSATELGLLE-IMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFL 90
V M +KSA ELG+ + I P LS E+AS L + K I L R LRLL F
Sbjct: 21 VSSMALKSAMELGIADAIHNHGKPMTLS--ELASSLKLHPSKVNI-LHRFLRLLTHNGFF 77
Query: 91 TCNLVSNKDGSVQRL--YGLTPVSKYFVPNKDGVSLAPTLL--IIQDQVN---MDSWSCA 143
+V K+G + Y LTP SK + K PT L I++ ++ +D WS +
Sbjct: 78 AKTIVKGKEGDEEEEIAYSLTPPSKLLISGK------PTCLSSIVKGALHPSSLDMWSSS 131
Query: 144 KDALLEG-SVPFMKAHNGMDGFAAAAKDERINNL--FNQSMHNHTTIVMKEILEIYKGFE 200
K E + G + KD + L F +M + + + + E + FE
Sbjct: 132 KKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFE 191
Query: 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKG 260
GL LVDV GG G K I +P L+ FD P V+ + + VGGDMF +P
Sbjct: 192 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSA 251
Query: 261 QAIFMK 266
A+ +K
Sbjct: 252 DAVLLK 257
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 111/246 (45%), Gaps = 20/246 (8%)
Query: 32 VLPMTIKSATELGLLE-IMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFL 90
V M +KSA ELG+ + I P LS E+AS L + K I L R LRLL F
Sbjct: 18 VSSMALKSAMELGIADAIHNHGKPMTLS--ELASSLKLHPSKVNI-LHRFLRLLTHNGFF 74
Query: 91 TCNLVSNKDGSVQRL--YGLTPVSKYFVPNKDGVSLAPTLL--IIQDQVN---MDSWSCA 143
+V K+G + Y LTP SK + K PT L I++ ++ +D WS +
Sbjct: 75 AKTIVKGKEGDEEEEIAYSLTPPSKLLISGK------PTCLSSIVKGALHPSSLDMWSSS 128
Query: 144 KDALLEG-SVPFMKAHNGMDGFAAAAKDERINNL--FNQSMHNHTTIVMKEILEIYKGFE 200
K E + G + KD + L F +M + + + + E + FE
Sbjct: 129 KKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFE 188
Query: 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKG 260
GL LVDV GG G K I +P L+ FD P V+ + + VGGDMF +P
Sbjct: 189 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSA 248
Query: 261 QAIFMK 266
A+ +K
Sbjct: 249 DAVLLK 254
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 108/248 (43%), Gaps = 29/248 (11%)
Query: 25 MELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLL 84
+++ +G + AT LGL +++ S +A+ + ++ ++ + R++RLL
Sbjct: 13 IQVVTGEWKSRCVYVATRLGLADLIESGID---SDETLAAAVGSDAER----IHRLMRLL 65
Query: 85 ASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAK 144
++ + +DG Y TP S + + + +G S +L ++ + +W+ A
Sbjct: 66 VAFEIFQGD---TRDG-----YANTPTS-HLLRDVEG-SFRDMVLFYGEEFHA-AWTPAC 114
Query: 145 DALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQ 204
+ALL G+ F A G D ++ + F +M + + EI + F G
Sbjct: 115 EALLSGTPGFELAF-GEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG-RS 170
Query: 205 LVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAP-------SCPGVEHVGGDMFVEV 257
VDV GG G K+I+ P RG+ D L A + V VGGDM EV
Sbjct: 171 FVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEV 230
Query: 258 PKGQAIFM 265
P I++
Sbjct: 231 PSNGDIYL 238
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 139 SWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKG 198
+W ++ G F A NG + +D + LFN++ + + ++ Y
Sbjct: 142 AWEQLTHSVRTGEASFDVA-NGTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD- 199
Query: 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGG 251
F G VD+ GG G+ +++ +P LRG + P V + A E + G
Sbjct: 200 FSGAATAVDIGGGRGSLXAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPG 259
Query: 252 DMFVEVPKGQAIFM 265
D F +P G +++
Sbjct: 260 DFFETIPDGADVYL 273
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 99/228 (43%), Gaps = 18/228 (7%)
Query: 17 DEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPII 76
++Q + L + A+G ++ + +A ELG+ +++A+A P L + +A+ + + ++
Sbjct: 5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEA-PGPLDVAAVAAGVRASAHGTELL 63
Query: 77 LDRM--LRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQ 134
LD L+LL + N + S L ++P S+ ++L +
Sbjct: 64 LDICVSLKLLKVETRGGKAFYRNTELSSDYLTTVSPTSQ------------CSMLKYMGR 111
Query: 135 VNMDSWSCAKDALLEGSVPFMKAHN--GMDGFAAAAKDERINNLFNQSMHNHTTIVMKEI 192
+ W DA+ EG +++ + F A + E F Q++ ++ + +
Sbjct: 112 TSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSV 171
Query: 193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHA 240
L + + D+ GG GA K +S YP + FD+P V+ A
Sbjct: 172 LTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTA 218
>pdb|3MCZ|A Chain A, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis.
pdb|3MCZ|B Chain B, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis
Length = 352
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 168 AKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLR 227
A D R + FN + + + + E+ F ++D+AGG G L ++ ++PQL
Sbjct: 147 AHDTRARDAFNDAXVRLSQPXVDVVSEL-GVFARARTVIDLAGGHGTYLAQVLRRHPQLT 205
Query: 228 GINFDLPHVLKHAPSCPGVEHVGG 251
G +DLP A +GG
Sbjct: 206 GQIWDLPTTRDAARKTIHAHDLGG 229
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 36/205 (17%)
Query: 37 IKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVS 96
+K+A EL L MA+ P L++ L + P L+ +L L +++
Sbjct: 48 MKAAIELDLFSHMAEG-PKDLAT------LAADTGSVPPRLEMLLETLRQ-----MRVIN 95
Query: 97 NKDGSVQRLYGLTPVSKYFV------PNKDGVSLAPTLLIIQDQVNMD-SWSCAKDALLE 149
+DG + LT + Y PN +A + + D M S + +
Sbjct: 96 LEDGK----WSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQKNFK 151
Query: 150 GSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVA 209
G VP+ R +NL+ + +H ++L +G+ +++DV
Sbjct: 152 GQVPYPPV-------------TREDNLYFEEIHRSNAKFAIQLLLEEAKLDGVKKMIDVG 198
Query: 210 GGLGANLKSIVSKYPQLRGINFDLP 234
GG+G +++ +P+L +LP
Sbjct: 199 GGIGDISAAMLKHFPELDSTILNLP 223
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVL-KHAPSCPGV---- 246
IL F + DV GG G L +++ ++P L+G+ D V+ +H P V
Sbjct: 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRW 234
Query: 247 EHVGGDMFVEVPKGQAIFMK 266
+ V GD EVP +K
Sbjct: 235 KVVEGDFLREVPHADVHVLK 254
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 28.9 bits (63), Expect = 3.3, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 150 GSVPFMKAHNGMDGFAAAAKDERINNLF 177
G+ FM A+NG++G + DE +NN+
Sbjct: 234 GAASFMCAYNGLNGKPSCGNDELLNNVL 261
>pdb|1ZTY|A Chain A, Crystal Structure Of The Chitin Oligasaccharide Binding
Protein
pdb|1ZU0|A Chain A, Crystal Structure Of The Liganded Chitin Oligasaccharide
Binding Protein
Length = 529
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Query: 168 AKDERINNL-----FNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSK 222
AK E ++N+ F+ ++ T I++I F G + D A GLG ++ +
Sbjct: 258 AKKEALDNVDFRRAFSMALDRQT------IIDI--AFYGSGTVNDFASGLGYAFEAWSDE 309
Query: 223 --YPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAI 263
+ + +G N K + G + V GD FVE P G++
Sbjct: 310 ATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSF 352
>pdb|2BIH|A Chain A, Crystal Structure Of The Molybdenum-containing Nitrate
Reducing Fragment Of Pichia Angusta Assimilatory Nitrate
Reductase
Length = 474
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 60 SEIASQLPTNNKKAPIILDR---MLRLLASYSFLTCNLVSNKDGSVQRLYG---LTPVSK 113
S + LPT+ K + R +LRL S+ F N + + +LY LTPVS
Sbjct: 23 SPLTEVLPTDLKTKDNFVARDPDLLRLTGSHPF-------NSEPPLTKLYDSGFLTPVSL 75
Query: 114 YFVPNKDGVSLAPTLLIIQDQVNMD 138
+FV N V P I+ +V+++
Sbjct: 76 HFVRNHGPVPYVPDENILDWEVSIE 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,591,834
Number of Sequences: 62578
Number of extensions: 299214
Number of successful extensions: 784
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 21
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)