Query 046424
Match_columns 266
No_of_seqs 119 out of 1177
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 21:03:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p9c_A Caffeic acid O-methyltr 100.0 8E-42 2.7E-46 309.9 24.6 261 1-266 5-266 (364)
2 4a6d_A Hydroxyindole O-methylt 100.0 4.1E-42 1.4E-46 310.6 19.8 238 17-266 5-251 (353)
3 3reo_A (ISO)eugenol O-methyltr 100.0 3.4E-41 1.2E-45 306.2 23.8 264 1-266 1-268 (368)
4 3lst_A CALO1 methyltransferase 100.0 2.3E-37 7.9E-42 278.7 22.3 232 16-266 18-254 (348)
5 1zg3_A Isoflavanone 4'-O-methy 100.0 1.3E-36 4.5E-41 274.7 22.3 247 15-266 5-258 (358)
6 3gwz_A MMCR; methyltransferase 100.0 6.3E-37 2.2E-41 278.1 20.0 231 18-266 36-275 (369)
7 1fp2_A Isoflavone O-methyltran 100.0 1.9E-36 6.5E-41 273.1 21.4 241 14-266 10-253 (352)
8 1fp1_D Isoliquiritigenin 2'-O- 100.0 1.1E-35 3.7E-40 270.1 23.6 251 14-266 16-274 (372)
9 3i53_A O-methyltransferase; CO 100.0 7.5E-37 2.6E-41 273.4 15.1 228 21-266 6-242 (332)
10 2ip2_A Probable phenazine-spec 100.0 1.2E-35 4E-40 265.6 20.2 226 19-266 7-240 (334)
11 3dp7_A SAM-dependent methyltra 100.0 1.2E-34 3.9E-39 262.6 16.8 231 14-266 9-255 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 1.2E-33 4.2E-38 256.1 17.2 231 17-265 13-254 (374)
13 1x19_A CRTF-related protein; m 100.0 8.4E-33 2.9E-37 249.8 19.6 228 10-266 20-263 (359)
14 1tw3_A COMT, carminomycin 4-O- 100.0 7.4E-33 2.5E-37 249.9 18.6 229 19-265 18-255 (360)
15 3mcz_A O-methyltransferase; ad 100.0 3.7E-32 1.3E-36 244.6 17.7 226 13-266 17-255 (352)
16 2r3s_A Uncharacterized protein 100.0 1E-31 3.5E-36 239.8 17.2 220 21-265 7-238 (335)
17 2qm3_A Predicted methyltransfe 99.3 1.5E-11 5.1E-16 111.3 10.4 183 44-265 47-247 (373)
18 1ve3_A Hypothetical protein PH 98.5 6.7E-08 2.3E-12 80.1 5.0 63 201-265 38-109 (227)
19 3dtn_A Putative methyltransfer 98.5 3.9E-07 1.3E-11 76.1 8.9 75 191-265 34-115 (234)
20 4gek_A TRNA (CMO5U34)-methyltr 98.4 3.8E-07 1.3E-11 78.3 7.2 67 199-265 68-145 (261)
21 3e05_A Precorrin-6Y C5,15-meth 98.4 9.6E-07 3.3E-11 72.2 8.2 74 191-265 31-114 (204)
22 1yb2_A Hypothetical protein TA 98.4 4.9E-07 1.7E-11 77.8 6.3 74 191-265 101-185 (275)
23 3ege_A Putative methyltransfer 98.4 1.9E-06 6.5E-11 73.4 9.8 73 190-265 24-100 (261)
24 3vc1_A Geranyl diphosphate 2-C 98.3 1.3E-06 4.5E-11 76.4 8.9 75 190-265 106-191 (312)
25 3mb5_A SAM-dependent methyltra 98.3 3E-07 1E-11 77.9 4.4 74 191-265 84-168 (255)
26 3dlc_A Putative S-adenosyl-L-m 98.3 5.3E-07 1.8E-11 73.9 5.6 72 191-265 35-117 (219)
27 1yzh_A TRNA (guanine-N(7)-)-me 98.3 9.5E-07 3.2E-11 73.0 6.6 65 201-265 41-117 (214)
28 3dh0_A SAM dependent methyltra 98.3 8.5E-07 2.9E-11 73.1 5.9 75 190-265 27-112 (219)
29 3mq2_A 16S rRNA methyltransfer 98.3 2.4E-06 8.1E-11 70.5 8.6 66 199-264 25-103 (218)
30 3ou2_A SAM-dependent methyltra 98.3 3.4E-06 1.1E-10 69.2 9.2 74 190-265 35-113 (218)
31 3kkz_A Uncharacterized protein 98.2 1.6E-06 5.6E-11 73.8 7.0 72 193-265 38-120 (267)
32 3f4k_A Putative methyltransfer 98.2 2E-06 7E-11 72.5 7.5 73 192-265 37-120 (257)
33 3kr9_A SAM-dependent methyltra 98.2 9E-07 3.1E-11 74.3 5.1 65 201-265 15-90 (225)
34 3ujc_A Phosphoethanolamine N-m 98.2 1.7E-06 5.9E-11 73.2 6.9 73 191-265 46-126 (266)
35 3bus_A REBM, methyltransferase 98.2 2.8E-06 9.7E-11 72.4 8.2 74 190-265 51-135 (273)
36 1vl5_A Unknown conserved prote 98.2 1.5E-06 5.3E-11 73.7 6.4 74 189-265 26-109 (260)
37 3g07_A 7SK snRNA methylphospha 98.2 2.3E-06 7.7E-11 74.4 7.4 41 201-241 46-87 (292)
38 3gu3_A Methyltransferase; alph 98.2 1.8E-06 6.2E-11 74.5 6.7 74 192-265 13-95 (284)
39 1nkv_A Hypothetical protein YJ 98.2 3.6E-06 1.2E-10 71.0 8.3 74 190-265 26-109 (256)
40 2qe6_A Uncharacterized protein 98.2 3.6E-06 1.2E-10 72.6 8.2 55 201-255 77-139 (274)
41 2o57_A Putative sarcosine dime 98.2 2.6E-06 8.9E-11 73.7 7.3 74 190-265 68-156 (297)
42 2p35_A Trans-aconitate 2-methy 98.2 2.1E-06 7.2E-11 72.5 6.4 74 191-265 24-101 (259)
43 3g5l_A Putative S-adenosylmeth 98.2 2.5E-06 8.6E-11 71.9 6.8 73 191-265 35-114 (253)
44 3mgg_A Methyltransferase; NYSG 98.2 2.2E-06 7.5E-11 73.3 6.4 67 199-265 35-111 (276)
45 3jwg_A HEN1, methyltransferase 98.2 1.7E-06 5.9E-11 71.4 5.5 66 200-265 28-108 (219)
46 3lec_A NADB-rossmann superfami 98.2 1.6E-06 5.5E-11 73.0 5.2 66 200-265 20-96 (230)
47 3jwh_A HEN1; methyltransferase 98.2 2.2E-06 7.6E-11 70.6 6.0 66 200-265 28-108 (217)
48 3pfg_A N-methyltransferase; N, 98.2 5.2E-06 1.8E-10 70.5 8.3 64 200-265 49-116 (263)
49 4hg2_A Methyltransferase type 98.2 6.9E-06 2.4E-10 70.2 9.1 63 201-265 39-105 (257)
50 3g5t_A Trans-aconitate 3-methy 98.2 5.6E-06 1.9E-10 71.8 8.5 66 200-265 35-119 (299)
51 2pwy_A TRNA (adenine-N(1)-)-me 98.1 1.6E-06 5.6E-11 73.2 4.9 74 191-265 87-172 (258)
52 4dcm_A Ribosomal RNA large sub 98.1 3.6E-06 1.2E-10 75.9 7.3 74 191-265 213-298 (375)
53 2b3t_A Protein methyltransfera 98.1 3.5E-06 1.2E-10 72.4 6.9 73 191-265 101-182 (276)
54 3hm2_A Precorrin-6Y C5,15-meth 98.1 2.1E-06 7.2E-11 68.2 5.1 72 192-265 17-100 (178)
55 2fca_A TRNA (guanine-N(7)-)-me 98.1 1.9E-06 6.5E-11 71.4 5.0 65 201-265 38-114 (213)
56 3bkw_A MLL3908 protein, S-aden 98.1 4.9E-06 1.7E-10 69.4 7.5 74 190-265 33-113 (243)
57 4dzr_A Protein-(glutamine-N5) 98.1 6.6E-07 2.3E-11 73.1 1.9 75 191-265 20-107 (215)
58 3gnl_A Uncharacterized protein 98.1 2.2E-06 7.6E-11 72.7 4.9 66 200-265 20-96 (244)
59 3cgg_A SAM-dependent methyltra 98.1 4.4E-06 1.5E-10 67.0 6.3 71 191-265 38-113 (195)
60 1jsx_A Glucose-inhibited divis 98.1 3.3E-06 1.1E-10 69.0 5.5 64 202-265 66-138 (207)
61 3uwp_A Histone-lysine N-methyl 98.1 4.1E-06 1.4E-10 76.1 6.6 75 190-265 163-258 (438)
62 2plw_A Ribosomal RNA methyltra 98.1 1.1E-05 3.7E-10 65.5 8.5 62 191-256 12-75 (201)
63 3ckk_A TRNA (guanine-N(7)-)-me 98.1 6.4E-06 2.2E-10 69.4 7.3 66 200-265 45-129 (235)
64 1xxl_A YCGJ protein; structura 98.1 6.1E-06 2.1E-10 69.2 6.9 73 190-265 11-93 (239)
65 2yxd_A Probable cobalt-precorr 98.1 3.2E-06 1.1E-10 67.1 4.7 72 191-265 26-106 (183)
66 3b3j_A Histone-arginine methyl 98.0 7.5E-06 2.6E-10 76.2 7.6 74 190-265 148-230 (480)
67 3ntv_A MW1564 protein; rossman 98.0 2.3E-06 7.8E-11 71.8 3.6 66 200-265 70-148 (232)
68 3g2m_A PCZA361.24; SAM-depende 98.0 5.2E-06 1.8E-10 72.0 6.0 73 189-265 72-156 (299)
69 3dxy_A TRNA (guanine-N(7)-)-me 98.0 2.3E-06 7.7E-11 71.4 3.5 65 201-265 34-111 (218)
70 1o54_A SAM-dependent O-methylt 98.0 6E-06 2.1E-10 70.9 6.2 74 191-265 103-187 (277)
71 1xtp_A LMAJ004091AAA; SGPP, st 98.0 2.7E-06 9.3E-11 71.6 3.9 74 190-265 83-164 (254)
72 3bxo_A N,N-dimethyltransferase 98.0 1.3E-05 4.4E-10 66.6 8.1 63 200-264 39-105 (239)
73 1pjz_A Thiopurine S-methyltran 98.0 4.8E-06 1.7E-10 68.3 5.3 70 193-265 15-107 (203)
74 3q87_B N6 adenine specific DNA 98.0 1.2E-05 4E-10 64.1 7.4 59 201-265 23-84 (170)
75 3hem_A Cyclopropane-fatty-acyl 98.0 7.5E-06 2.5E-10 71.1 6.7 72 191-265 63-143 (302)
76 1nv8_A HEMK protein; class I a 98.0 4.7E-06 1.6E-10 72.3 5.4 64 201-265 123-198 (284)
77 3ccf_A Cyclopropane-fatty-acyl 98.0 8.8E-06 3E-10 69.8 7.0 72 191-265 48-123 (279)
78 3hnr_A Probable methyltransfer 98.0 6.7E-06 2.3E-10 67.7 6.0 72 191-265 36-112 (220)
79 3ocj_A Putative exported prote 98.0 1.7E-06 5.8E-11 75.5 2.5 67 199-265 116-193 (305)
80 2yqz_A Hypothetical protein TT 98.0 1.5E-05 5.2E-10 67.2 8.1 65 199-265 37-110 (263)
81 3gjy_A Spermidine synthase; AP 98.0 3.6E-06 1.2E-10 74.1 4.0 63 203-265 91-165 (317)
82 2h00_A Methyltransferase 10 do 98.0 6.1E-06 2.1E-10 69.8 5.3 65 201-265 65-146 (254)
83 1dus_A MJ0882; hypothetical pr 98.0 1.4E-05 4.7E-10 63.9 7.1 73 190-265 42-125 (194)
84 2fyt_A Protein arginine N-meth 98.0 1.3E-05 4.4E-10 71.3 7.5 73 191-265 55-137 (340)
85 3dli_A Methyltransferase; PSI- 98.0 1.2E-05 4.1E-10 67.3 7.0 63 199-265 39-107 (240)
86 4fsd_A Arsenic methyltransfera 98.0 9.3E-06 3.2E-10 73.3 6.6 65 201-265 83-172 (383)
87 2xvm_A Tellurite resistance pr 98.0 1.2E-05 4.2E-10 64.7 6.7 72 191-265 23-103 (199)
88 3njr_A Precorrin-6Y methylase; 98.0 1.5E-05 5.1E-10 65.5 7.2 71 192-265 47-128 (204)
89 3tfw_A Putative O-methyltransf 98.0 6.8E-06 2.3E-10 69.6 5.2 66 200-265 62-142 (248)
90 3l8d_A Methyltransferase; stru 98.0 2.6E-05 8.9E-10 65.0 8.8 64 200-265 52-122 (242)
91 3d2l_A SAM-dependent methyltra 98.0 8.7E-06 3E-10 67.9 5.8 62 201-265 33-102 (243)
92 2vdv_E TRNA (guanine-N(7)-)-me 98.0 1.7E-05 5.8E-10 66.9 7.6 57 200-256 48-119 (246)
93 3bkx_A SAM-dependent methyltra 98.0 8.4E-06 2.9E-10 69.5 5.7 74 191-265 34-128 (275)
94 3grz_A L11 mtase, ribosomal pr 98.0 1.5E-05 5E-10 65.0 6.9 65 200-265 59-131 (205)
95 3adn_A Spermidine synthase; am 98.0 8.6E-06 2.9E-10 71.1 5.7 66 200-265 82-163 (294)
96 2pjd_A Ribosomal RNA small sub 97.9 9.5E-06 3.3E-10 72.1 6.1 75 190-265 186-267 (343)
97 2y1w_A Histone-arginine methyl 97.9 1.1E-05 3.9E-10 71.8 6.3 74 190-265 40-122 (348)
98 1wzn_A SAM-dependent methyltra 97.9 1.6E-05 5.5E-10 66.8 7.0 72 191-265 32-111 (252)
99 1kpg_A CFA synthase;, cyclopro 97.9 1.4E-05 4.7E-10 68.7 6.5 72 191-265 55-135 (287)
100 2ozv_A Hypothetical protein AT 97.9 1.5E-05 5E-10 68.1 6.4 67 199-265 34-121 (260)
101 3fpf_A Mtnas, putative unchara 97.9 1E-05 3.4E-10 70.6 5.3 66 199-265 120-194 (298)
102 1fbn_A MJ fibrillarin homologu 97.9 3.8E-05 1.3E-09 64.0 8.7 66 199-264 72-148 (230)
103 2pxx_A Uncharacterized protein 97.9 1.8E-05 6.2E-10 64.5 6.6 65 200-265 41-113 (215)
104 1i9g_A Hypothetical protein RV 97.9 1.5E-05 5.1E-10 68.3 6.3 74 191-265 90-177 (280)
105 3q7e_A Protein arginine N-meth 97.9 1.1E-05 3.9E-10 71.8 5.7 64 201-265 66-139 (349)
106 4htf_A S-adenosylmethionine-de 97.9 9.9E-06 3.4E-10 69.6 5.1 71 191-265 60-142 (285)
107 3h2b_A SAM-dependent methyltra 97.9 7.2E-06 2.5E-10 66.7 3.8 62 202-265 42-108 (203)
108 1jg1_A PIMT;, protein-L-isoasp 97.9 1.5E-05 5E-10 66.7 5.7 74 190-265 81-164 (235)
109 2fk8_A Methoxy mycolic acid sy 97.9 1.9E-05 6.4E-10 69.0 6.6 72 191-265 81-161 (318)
110 3tma_A Methyltransferase; thum 97.9 1.4E-05 4.8E-10 71.2 5.7 75 190-265 193-278 (354)
111 2ipx_A RRNA 2'-O-methyltransfe 97.9 9.9E-06 3.4E-10 67.6 4.2 67 199-265 75-153 (233)
112 3e23_A Uncharacterized protein 97.9 1.8E-05 6.1E-10 64.8 5.7 65 199-265 41-108 (211)
113 2p7i_A Hypothetical protein; p 97.8 1.5E-05 5E-10 66.5 5.2 63 201-265 42-109 (250)
114 2esr_A Methyltransferase; stru 97.8 9.7E-06 3.3E-10 64.5 3.9 65 200-265 30-106 (177)
115 2yxe_A Protein-L-isoaspartate 97.8 2.5E-05 8.7E-10 64.0 6.5 74 191-265 68-152 (215)
116 1ej0_A FTSJ; methyltransferase 97.8 3.6E-05 1.2E-09 60.3 7.1 71 191-265 12-94 (180)
117 3m33_A Uncharacterized protein 97.8 1.9E-05 6.5E-10 65.6 5.8 64 200-265 47-117 (226)
118 3i9f_A Putative type 11 methyl 97.8 5.5E-06 1.9E-10 65.4 2.3 68 193-265 10-81 (170)
119 1xdz_A Methyltransferase GIDB; 97.8 7.7E-06 2.6E-10 68.7 3.3 67 199-265 68-147 (240)
120 3duw_A OMT, O-methyltransferas 97.8 4.8E-06 1.6E-10 68.9 1.9 66 200-265 57-139 (223)
121 1nt2_A Fibrillarin-like PRE-rR 97.8 3.1E-05 1.1E-09 63.9 6.8 67 199-265 55-132 (210)
122 2gpy_A O-methyltransferase; st 97.8 1.1E-05 3.9E-10 67.2 4.1 65 201-265 54-132 (233)
123 3lbf_A Protein-L-isoaspartate 97.8 3.1E-05 1.1E-09 63.2 6.7 72 191-265 68-149 (210)
124 1zq9_A Probable dimethyladenos 97.8 3.3E-05 1.1E-09 66.9 6.8 73 190-265 18-99 (285)
125 1g6q_1 HnRNP arginine N-methyl 97.8 2.2E-05 7.4E-10 69.4 5.6 64 201-265 38-111 (328)
126 3eey_A Putative rRNA methylase 97.8 1.3E-05 4.4E-10 64.9 3.9 67 199-265 20-99 (197)
127 1g8a_A Fibrillarin-like PRE-rR 97.8 4.6E-05 1.6E-09 63.1 7.3 67 199-265 71-149 (227)
128 2fhp_A Methylase, putative; al 97.8 1.4E-05 4.9E-10 63.8 4.0 66 199-265 42-122 (187)
129 3mti_A RRNA methylase; SAM-dep 97.8 3.2E-05 1.1E-09 61.9 6.0 65 199-265 20-95 (185)
130 3lpm_A Putative methyltransfer 97.8 2.5E-05 8.5E-10 66.4 5.6 66 199-265 46-125 (259)
131 1iy9_A Spermidine synthase; ro 97.8 1.4E-05 4.7E-10 69.0 4.0 65 201-265 75-154 (275)
132 1ne2_A Hypothetical protein TA 97.8 2E-05 6.7E-10 64.1 4.8 64 200-265 50-116 (200)
133 3ofk_A Nodulation protein S; N 97.8 3.1E-05 1E-09 63.5 5.7 65 199-265 49-120 (216)
134 2bm8_A Cephalosporin hydroxyla 97.8 3.6E-05 1.2E-09 64.7 6.2 65 201-265 81-158 (236)
135 3sm3_A SAM-dependent methyltra 97.8 4E-05 1.4E-09 63.2 6.4 64 200-265 29-107 (235)
136 1p91_A Ribosomal RNA large sub 97.8 2.4E-05 8.4E-10 66.5 5.2 65 201-265 85-154 (269)
137 3gru_A Dimethyladenosine trans 97.7 5.4E-05 1.9E-09 66.0 7.3 72 190-264 40-119 (295)
138 3fzg_A 16S rRNA methylase; met 97.7 7.7E-06 2.6E-10 66.8 1.8 64 200-265 48-121 (200)
139 3cc8_A Putative methyltransfer 97.7 5.6E-05 1.9E-09 62.1 7.0 71 190-265 23-99 (230)
140 3tr6_A O-methyltransferase; ce 97.7 7.6E-06 2.6E-10 67.7 1.6 65 201-265 64-146 (225)
141 3a27_A TYW2, uncharacterized p 97.7 2.4E-05 8.1E-10 67.3 4.8 67 199-265 117-192 (272)
142 3ggd_A SAM-dependent methyltra 97.7 3.1E-05 1.1E-09 64.8 5.4 55 199-255 54-112 (245)
143 1qam_A ERMC' methyltransferase 97.7 4.4E-05 1.5E-09 64.6 6.4 67 190-259 20-92 (244)
144 3lcc_A Putative methyl chlorid 97.7 2.2E-05 7.5E-10 65.4 4.4 61 203-265 68-138 (235)
145 2b25_A Hypothetical protein; s 97.7 5.8E-05 2E-09 66.6 7.4 74 191-265 96-193 (336)
146 2gb4_A Thiopurine S-methyltran 97.7 2.5E-05 8.7E-10 66.5 4.7 63 201-265 68-158 (252)
147 3g89_A Ribosomal RNA small sub 97.7 1.7E-05 5.7E-10 67.4 3.6 66 200-265 79-157 (249)
148 3u81_A Catechol O-methyltransf 97.7 2.7E-05 9.3E-10 64.4 4.8 65 201-265 58-140 (221)
149 3p2e_A 16S rRNA methylase; met 97.7 3.4E-05 1.2E-09 64.4 5.4 56 200-255 23-89 (225)
150 3orh_A Guanidinoacetate N-meth 97.7 1E-05 3.5E-10 68.0 1.9 64 201-265 60-134 (236)
151 4hc4_A Protein arginine N-meth 97.7 3.5E-05 1.2E-09 69.4 5.3 62 202-264 84-154 (376)
152 3r0q_C Probable protein argini 97.7 4.1E-05 1.4E-09 69.0 5.8 66 199-265 61-135 (376)
153 2frn_A Hypothetical protein PH 97.7 3.6E-05 1.2E-09 66.3 5.2 65 200-265 124-198 (278)
154 1y8c_A S-adenosylmethionine-de 97.7 4.5E-05 1.5E-09 63.4 5.6 63 201-265 37-107 (246)
155 3c3p_A Methyltransferase; NP_9 97.7 1.9E-05 6.6E-10 64.7 3.2 65 201-265 56-132 (210)
156 1l3i_A Precorrin-6Y methyltran 97.7 2.8E-05 9.7E-10 62.0 4.1 71 192-265 25-106 (192)
157 3dou_A Ribosomal RNA large sub 97.7 8.8E-05 3E-09 60.3 7.1 61 190-256 14-74 (191)
158 1o9g_A RRNA methyltransferase; 97.7 3.6E-05 1.2E-09 64.9 4.9 41 201-241 51-94 (250)
159 2nxc_A L11 mtase, ribosomal pr 97.7 1.6E-05 5.4E-10 67.6 2.5 64 200-265 119-190 (254)
160 3m70_A Tellurite resistance pr 97.7 5.4E-05 1.8E-09 65.0 5.8 72 191-265 111-190 (286)
161 3e8s_A Putative SAM dependent 97.7 5.9E-05 2E-09 61.8 5.8 72 191-265 43-122 (227)
162 3ftd_A Dimethyladenosine trans 97.6 7.1E-05 2.4E-09 63.6 6.4 68 190-259 21-92 (249)
163 2yvl_A TRMI protein, hypotheti 97.6 0.00012 4E-09 61.2 7.7 72 191-265 82-164 (248)
164 2kw5_A SLR1183 protein; struct 97.6 5.4E-05 1.8E-09 61.3 5.3 60 204-265 32-100 (202)
165 1xj5_A Spermidine synthase 1; 97.6 2.5E-05 8.6E-10 69.3 3.5 66 200-265 119-200 (334)
166 3tm4_A TRNA (guanine N2-)-meth 97.6 3E-05 1E-09 69.8 4.0 67 199-265 215-292 (373)
167 1m6y_A S-adenosyl-methyltransf 97.6 6.4E-05 2.2E-09 65.7 6.0 65 190-255 16-86 (301)
168 2ex4_A Adrenal gland protein A 97.6 2.8E-05 9.4E-10 65.1 3.4 64 201-265 79-152 (241)
169 3thr_A Glycine N-methyltransfe 97.6 3.4E-05 1.2E-09 66.4 3.9 64 200-265 56-136 (293)
170 3evz_A Methyltransferase; NYSG 97.6 8.1E-05 2.8E-09 61.6 6.1 66 199-265 53-129 (230)
171 2hnk_A SAM-dependent O-methylt 97.6 3.2E-05 1.1E-09 64.8 3.5 55 201-255 60-123 (239)
172 3bwc_A Spermidine synthase; SA 97.6 3.3E-05 1.1E-09 67.5 3.7 66 200-265 94-175 (304)
173 2o07_A Spermidine synthase; st 97.6 3E-05 1E-09 67.9 3.4 66 200-265 94-174 (304)
174 2avd_A Catechol-O-methyltransf 97.6 1.8E-05 6E-10 65.7 1.8 66 200-265 68-151 (229)
175 1ri5_A MRNA capping enzyme; me 97.6 9.9E-05 3.4E-09 63.3 6.6 65 200-265 63-139 (298)
176 2p8j_A S-adenosylmethionine-de 97.6 5.9E-05 2E-09 61.3 4.9 65 200-265 22-95 (209)
177 2h1r_A Dimethyladenosine trans 97.6 5.6E-05 1.9E-09 65.9 5.1 73 190-265 32-112 (299)
178 3p9n_A Possible methyltransfer 97.6 4.6E-05 1.6E-09 61.3 4.2 64 201-265 44-119 (189)
179 2cmg_A Spermidine synthase; tr 97.6 9.5E-05 3.3E-09 63.3 6.3 62 201-265 72-145 (262)
180 1vbf_A 231AA long hypothetical 97.6 0.00012 4E-09 60.7 6.7 72 191-265 61-140 (231)
181 3uzu_A Ribosomal RNA small sub 97.6 3E-05 1E-09 67.1 3.1 68 191-259 33-106 (279)
182 1inl_A Spermidine synthase; be 97.6 3.3E-05 1.1E-09 67.3 3.3 65 201-265 90-169 (296)
183 3htx_A HEN1; HEN1, small RNA m 97.6 7.8E-05 2.7E-09 73.0 6.2 65 201-265 721-802 (950)
184 1wy7_A Hypothetical protein PH 97.6 8.2E-05 2.8E-09 60.6 5.5 63 201-265 49-118 (207)
185 2ih2_A Modification methylase 97.6 0.00013 4.5E-09 66.0 7.4 71 191-265 30-104 (421)
186 3r3h_A O-methyltransferase, SA 97.6 1.4E-05 5E-10 67.5 0.8 65 201-265 60-142 (242)
187 1dl5_A Protein-L-isoaspartate 97.6 9.2E-05 3.2E-09 64.9 6.0 74 191-265 66-150 (317)
188 2zfu_A Nucleomethylin, cerebra 97.6 0.00014 4.8E-09 59.5 6.8 62 191-265 57-121 (215)
189 2pt6_A Spermidine synthase; tr 97.6 2.8E-05 9.7E-10 68.5 2.6 65 201-265 116-195 (321)
190 3k0b_A Predicted N6-adenine-sp 97.5 0.00011 3.6E-09 66.7 6.4 74 191-265 192-313 (393)
191 1sui_A Caffeoyl-COA O-methyltr 97.5 2.3E-05 8E-10 66.4 1.8 65 201-265 79-162 (247)
192 2i7c_A Spermidine synthase; tr 97.5 3.4E-05 1.2E-09 66.7 2.7 66 200-265 77-157 (283)
193 3fut_A Dimethyladenosine trans 97.5 9.9E-05 3.4E-09 63.5 5.5 65 190-258 37-106 (271)
194 1uir_A Polyamine aminopropyltr 97.5 3.5E-05 1.2E-09 67.7 2.7 65 201-265 77-157 (314)
195 2fpo_A Methylase YHHF; structu 97.5 4.9E-05 1.7E-09 62.1 3.5 63 202-265 55-128 (202)
196 2nyu_A Putative ribosomal RNA 97.5 0.00029 9.8E-09 56.6 8.0 60 192-255 13-82 (196)
197 3gdh_A Trimethylguanosine synt 97.5 3.6E-05 1.2E-09 64.3 2.7 63 201-265 78-150 (241)
198 1mjf_A Spermidine synthase; sp 97.5 4.2E-05 1.4E-09 66.1 3.1 64 201-265 75-158 (281)
199 1zx0_A Guanidinoacetate N-meth 97.5 3.5E-05 1.2E-09 64.3 2.4 64 201-265 60-134 (236)
200 3ldu_A Putative methylase; str 97.5 8.9E-05 3.1E-09 67.0 5.2 74 191-265 186-307 (385)
201 3c3y_A Pfomt, O-methyltransfer 97.5 3E-05 1E-09 65.2 1.9 66 200-265 69-153 (237)
202 3dr5_A Putative O-methyltransf 97.5 4.9E-05 1.7E-09 63.3 3.0 63 203-265 58-135 (221)
203 3tqs_A Ribosomal RNA small sub 97.5 8.3E-05 2.8E-09 63.4 4.5 66 190-258 19-90 (255)
204 3frh_A 16S rRNA methylase; met 97.5 0.00012 4.1E-09 61.8 5.2 64 199-265 103-174 (253)
205 1u2z_A Histone-lysine N-methyl 97.5 0.00024 8.3E-09 65.1 7.7 74 191-265 233-329 (433)
206 1ws6_A Methyltransferase; stru 97.5 2.5E-05 8.6E-10 61.3 0.9 63 201-265 41-116 (171)
207 3ldg_A Putative uncharacterize 97.5 0.00016 5.5E-09 65.3 6.3 74 191-265 185-306 (384)
208 2b2c_A Spermidine synthase; be 97.5 4.3E-05 1.5E-09 67.2 2.5 65 201-265 108-187 (314)
209 3bgv_A MRNA CAP guanine-N7 met 97.5 0.00048 1.7E-08 59.9 9.2 88 174-265 9-120 (313)
210 1vlm_A SAM-dependent methyltra 97.4 0.00015 5.3E-09 59.6 5.5 57 202-265 48-108 (219)
211 2gs9_A Hypothetical protein TT 97.4 0.00013 4.4E-09 59.5 4.7 60 201-265 36-101 (211)
212 3lcv_B Sisomicin-gentamicin re 97.4 4.9E-05 1.7E-09 64.9 2.1 66 200-265 131-204 (281)
213 1yub_A Ermam, rRNA methyltrans 97.4 0.0001 3.5E-09 62.1 4.1 67 190-259 19-91 (245)
214 1r18_A Protein-L-isoaspartate( 97.4 0.00016 5.3E-09 60.0 5.1 67 199-265 82-169 (227)
215 2ift_A Putative methylase HI07 97.4 6.3E-05 2.2E-09 61.4 2.5 63 202-265 54-131 (201)
216 2avn_A Ubiquinone/menaquinone 97.4 0.00018 6.1E-09 60.9 5.4 63 201-265 54-120 (260)
217 3cbg_A O-methyltransferase; cy 97.4 4.4E-05 1.5E-09 63.8 1.4 65 201-265 72-154 (232)
218 2oxt_A Nucleoside-2'-O-methylt 97.3 0.00035 1.2E-08 59.9 6.7 63 199-265 72-146 (265)
219 2pbf_A Protein-L-isoaspartate 97.3 0.00023 7.9E-09 58.8 5.4 67 199-265 78-168 (227)
220 1uwv_A 23S rRNA (uracil-5-)-me 97.3 0.00029 9.9E-09 64.6 6.4 71 192-265 278-362 (433)
221 1af7_A Chemotaxis receptor met 97.3 0.00026 8.9E-09 61.0 5.7 65 201-265 105-219 (274)
222 3o4f_A Spermidine synthase; am 97.3 0.00038 1.3E-08 60.5 6.0 66 200-265 82-163 (294)
223 1i1n_A Protein-L-isoaspartate 97.3 0.00029 1E-08 58.1 5.2 66 200-265 76-157 (226)
224 1qyr_A KSGA, high level kasuga 97.2 0.00027 9.2E-09 60.1 4.9 66 190-258 11-82 (252)
225 3b73_A PHIH1 repressor-like pr 97.2 0.00019 6.6E-09 53.2 3.4 64 42-119 15-80 (111)
226 2wa2_A Non-structural protein 97.2 0.00035 1.2E-08 60.2 5.6 63 199-265 80-154 (276)
227 3iv6_A Putative Zn-dependent a 97.2 0.00038 1.3E-08 59.5 5.3 50 190-242 35-85 (261)
228 3k6r_A Putative transferase PH 97.1 0.00036 1.2E-08 60.2 4.6 66 199-265 123-198 (278)
229 3dmg_A Probable ribosomal RNA 97.1 0.00049 1.7E-08 62.1 5.5 63 201-265 233-304 (381)
230 4gqb_A Protein arginine N-meth 97.1 0.00058 2E-08 65.4 6.1 95 163-264 323-433 (637)
231 1ixk_A Methyltransferase; open 97.1 0.00044 1.5E-08 60.6 4.9 71 194-265 112-193 (315)
232 2p41_A Type II methyltransfera 97.0 0.00068 2.3E-08 59.2 5.6 64 199-265 80-154 (305)
233 2r6z_A UPF0341 protein in RSP 97.0 0.0003 1E-08 60.0 2.7 65 199-265 81-167 (258)
234 2heo_A Z-DNA binding protein 1 97.0 0.00041 1.4E-08 46.5 2.7 55 42-109 12-66 (67)
235 3giw_A Protein of unknown func 97.0 0.00075 2.6E-08 58.1 4.9 55 201-255 78-142 (277)
236 3sso_A Methyltransferase; macr 97.0 0.0004 1.4E-08 62.9 3.3 63 201-265 216-294 (419)
237 1xmk_A Double-stranded RNA-spe 96.9 0.00049 1.7E-08 47.8 3.0 62 41-114 12-74 (79)
238 3id6_C Fibrillarin-like rRNA/T 96.9 0.0024 8.3E-08 53.5 7.5 75 191-265 64-152 (232)
239 2f8l_A Hypothetical protein LM 96.9 0.00064 2.2E-08 60.2 3.9 65 201-265 130-207 (344)
240 2jjq_A Uncharacterized RNA met 96.9 0.0015 5.2E-08 59.7 6.4 62 201-265 290-359 (425)
241 2qfm_A Spermine synthase; sper 96.8 0.0004 1.4E-08 62.0 2.4 64 201-265 188-273 (364)
242 3ajd_A Putative methyltransfer 96.8 0.00067 2.3E-08 58.1 3.7 67 199-265 81-162 (274)
243 1y0u_A Arsenical resistance op 96.8 0.00097 3.3E-08 47.7 3.9 61 36-113 27-87 (96)
244 4df3_A Fibrillarin-like rRNA/T 96.8 0.0034 1.2E-07 52.6 7.8 65 191-255 65-137 (233)
245 3bzb_A Uncharacterized protein 96.8 0.0019 6.7E-08 55.4 6.5 64 201-265 79-169 (281)
246 2yx1_A Hypothetical protein MJ 96.8 0.00086 2.9E-08 59.3 4.2 62 200-265 194-264 (336)
247 2i62_A Nicotinamide N-methyltr 96.8 0.00034 1.2E-08 58.8 1.4 40 201-241 56-96 (265)
248 2yxl_A PH0851 protein, 450AA l 96.7 0.0021 7.2E-08 59.1 6.4 72 193-265 252-336 (450)
249 2igt_A SAM dependent methyltra 96.7 0.00065 2.2E-08 60.1 2.6 63 201-265 153-231 (332)
250 2oyr_A UPF0341 protein YHIQ; a 96.7 0.0013 4.6E-08 56.0 4.2 72 191-265 77-170 (258)
251 4azs_A Methyltransferase WBDD; 96.6 0.00085 2.9E-08 63.6 3.1 63 200-264 65-139 (569)
252 3v97_A Ribosomal RNA large sub 96.5 0.0027 9.2E-08 61.7 5.7 75 190-265 180-309 (703)
253 3ll7_A Putative methyltransfer 96.4 0.0013 4.5E-08 59.7 2.5 63 201-265 93-169 (410)
254 3ua3_A Protein arginine N-meth 96.3 0.0032 1.1E-07 60.6 4.9 95 163-264 378-500 (745)
255 1wg8_A Predicted S-adenosylmet 96.3 0.0063 2.2E-07 52.3 6.1 64 189-255 11-77 (285)
256 1u2w_A CADC repressor, cadmium 96.3 0.0027 9.2E-08 47.6 3.4 65 35-110 37-101 (122)
257 1qbj_A Protein (double-strande 96.3 0.0039 1.3E-07 43.4 3.9 67 40-116 10-77 (81)
258 2okc_A Type I restriction enzy 96.3 0.0035 1.2E-07 57.5 4.7 73 192-265 163-259 (445)
259 3ech_A MEXR, multidrug resista 96.3 0.0063 2.2E-07 46.2 5.5 69 40-116 37-105 (142)
260 2vdw_A Vaccinia virus capping 96.3 0.0032 1.1E-07 54.7 4.2 51 202-253 49-112 (302)
261 1sqg_A SUN protein, FMU protei 96.2 0.0049 1.7E-07 56.2 5.6 72 193-265 239-321 (429)
262 3jth_A Transcription activator 96.2 0.0022 7.5E-08 45.9 2.6 63 36-110 19-81 (98)
263 2b78_A Hypothetical protein SM 96.2 0.001 3.5E-08 60.0 0.9 65 200-265 211-291 (385)
264 3cuo_A Uncharacterized HTH-typ 96.2 0.0025 8.7E-08 45.3 2.9 62 39-111 23-84 (99)
265 1ub9_A Hypothetical protein PH 96.2 0.0029 1E-07 45.0 3.2 71 35-113 11-81 (100)
266 2oqg_A Possible transcriptiona 96.2 0.0028 9.6E-08 46.4 3.1 60 41-112 22-81 (114)
267 3opn_A Putative hemolysin; str 96.2 0.0089 3E-07 49.9 6.5 47 191-239 27-75 (232)
268 3pqk_A Biofilm growth-associat 96.2 0.0046 1.6E-07 44.5 4.2 63 36-110 19-81 (102)
269 3mq0_A Transcriptional repress 96.2 0.0025 8.6E-08 54.7 3.0 59 42-113 32-90 (275)
270 2as0_A Hypothetical protein PH 96.2 0.0013 4.6E-08 59.2 1.3 64 201-265 217-295 (396)
271 1wxx_A TT1595, hypothetical pr 96.1 0.0012 4E-08 59.4 0.8 63 201-265 209-285 (382)
272 4e2x_A TCAB9; kijanose, tetron 96.1 0.0044 1.5E-07 56.0 4.5 52 189-243 96-148 (416)
273 4auk_A Ribosomal RNA large sub 96.1 0.0071 2.4E-07 54.0 5.7 64 199-264 209-275 (375)
274 2g72_A Phenylethanolamine N-me 96.1 0.0017 6E-08 55.6 1.5 39 201-240 71-110 (289)
275 3f6o_A Probable transcriptiona 96.0 0.0041 1.4E-07 46.2 3.3 65 35-111 13-77 (118)
276 2aot_A HMT, histamine N-methyl 96.0 0.0065 2.2E-07 52.1 4.9 41 201-241 52-99 (292)
277 1r7j_A Conserved hypothetical 95.9 0.0044 1.5E-07 44.4 3.0 48 57-117 21-68 (95)
278 2a14_A Indolethylamine N-methy 95.9 0.0012 4.2E-08 55.9 -0.1 39 201-240 55-94 (263)
279 1xn7_A Hypothetical protein YH 95.9 0.0068 2.3E-07 41.8 3.7 43 45-93 7-49 (78)
280 1tbx_A ORF F-93, hypothetical 95.9 0.0053 1.8E-07 43.8 3.2 64 42-116 10-77 (99)
281 2k02_A Ferrous iron transport 95.9 0.0064 2.2E-07 42.8 3.5 44 44-93 6-49 (87)
282 2hzt_A Putative HTH-type trans 95.9 0.0078 2.7E-07 43.8 4.1 63 45-116 19-82 (107)
283 2k4m_A TR8_protein, UPF0146 pr 95.8 0.015 5.2E-07 45.0 5.7 55 200-264 34-94 (153)
284 3c0k_A UPF0064 protein YCCW; P 95.8 0.0022 7.5E-08 57.9 1.1 64 201-265 220-299 (396)
285 3bt7_A TRNA (uracil-5-)-methyl 95.8 0.0041 1.4E-07 55.6 2.7 51 203-255 215-272 (369)
286 3df8_A Possible HXLR family tr 95.8 0.0054 1.9E-07 45.1 3.0 75 20-116 16-93 (111)
287 2htj_A P fimbrial regulatory p 95.8 0.011 3.6E-07 40.8 4.3 45 43-93 3-47 (81)
288 1on2_A Transcriptional regulat 95.7 0.0059 2E-07 46.6 3.0 56 47-116 15-70 (142)
289 1qgp_A Protein (double strande 95.7 0.0084 2.9E-07 41.2 3.4 60 41-110 15-75 (77)
290 4dmg_A Putative uncharacterize 95.6 0.012 4.3E-07 53.0 5.3 62 202-265 215-286 (393)
291 1mkm_A ICLR transcriptional re 95.6 0.0098 3.3E-07 50.1 4.3 58 42-112 10-67 (249)
292 2gxg_A 146AA long hypothetical 95.6 0.046 1.6E-06 41.2 7.8 67 41-116 38-104 (146)
293 2xyq_A Putative 2'-O-methyl tr 95.6 0.014 4.7E-07 50.6 5.2 59 199-265 61-129 (290)
294 2xrn_A HTH-type transcriptiona 95.5 0.0088 3E-07 50.2 3.6 62 42-115 8-69 (241)
295 3f6v_A Possible transcriptiona 95.5 0.0089 3E-07 46.6 3.3 68 33-112 51-118 (151)
296 3v97_A Ribosomal RNA large sub 95.5 0.0062 2.1E-07 59.1 2.9 64 201-265 539-615 (703)
297 2jsc_A Transcriptional regulat 95.5 0.0076 2.6E-07 44.8 2.8 61 38-110 19-79 (118)
298 3m6w_A RRNA methylase; rRNA me 95.4 0.0081 2.8E-07 55.5 3.4 66 199-265 99-176 (464)
299 1r1u_A CZRA, repressor protein 95.4 0.0084 2.9E-07 43.5 2.8 47 40-93 26-72 (106)
300 2y75_A HTH-type transcriptiona 95.4 0.015 5E-07 43.8 4.3 45 56-110 26-70 (129)
301 2frx_A Hypothetical protein YE 95.4 0.019 6.4E-07 53.2 5.6 65 201-265 117-193 (479)
302 1oyi_A Double-stranded RNA-bin 95.4 0.013 4.3E-07 40.8 3.3 60 40-112 17-76 (82)
303 2g7u_A Transcriptional regulat 95.3 0.006 2E-07 51.7 2.0 61 42-116 16-76 (257)
304 2kko_A Possible transcriptiona 95.3 0.0045 1.5E-07 45.3 1.0 46 41-93 26-71 (108)
305 3bja_A Transcriptional regulat 95.3 0.013 4.4E-07 43.9 3.6 68 41-116 34-101 (139)
306 3k0l_A Repressor protein; heli 95.3 0.014 4.9E-07 45.3 4.0 68 41-116 47-114 (162)
307 4a5n_A Uncharacterized HTH-typ 95.3 0.02 7E-07 43.5 4.7 80 20-117 15-95 (131)
308 3hp7_A Hemolysin, putative; st 95.2 0.034 1.2E-06 48.1 6.5 57 191-249 75-134 (291)
309 3g3z_A NMB1585, transcriptiona 95.2 0.01 3.5E-07 45.1 2.9 68 41-116 32-99 (145)
310 3tka_A Ribosomal RNA small sub 95.2 0.053 1.8E-06 47.8 7.6 65 190-255 47-115 (347)
311 2ia2_A Putative transcriptiona 95.2 0.0059 2E-07 52.0 1.5 59 42-114 23-81 (265)
312 1yyv_A Putative transcriptiona 95.2 0.01 3.4E-07 45.1 2.7 79 20-116 24-103 (131)
313 2b9e_A NOL1/NOP2/SUN domain fa 95.2 0.034 1.1E-06 48.5 6.4 67 199-265 100-180 (309)
314 3r4k_A Transcriptional regulat 95.2 0.0041 1.4E-07 52.9 0.5 58 43-112 9-66 (260)
315 2dul_A N(2),N(2)-dimethylguano 95.1 0.018 6E-07 51.7 4.5 65 201-265 47-137 (378)
316 3bdd_A Regulatory protein MARR 95.1 0.014 4.6E-07 44.0 3.2 68 41-116 32-99 (142)
317 3nrv_A Putative transcriptiona 95.1 0.01 3.5E-07 45.2 2.4 68 41-116 41-108 (148)
318 3fm5_A Transcriptional regulat 95.0 0.05 1.7E-06 41.4 6.4 69 41-116 40-108 (150)
319 2fsw_A PG_0823 protein; alpha- 95.0 0.046 1.6E-06 39.6 5.8 81 18-116 12-93 (107)
320 2wte_A CSA3; antiviral protein 95.0 0.013 4.3E-07 49.5 3.0 63 41-116 153-215 (244)
321 3oop_A LIN2960 protein; protei 95.0 0.0088 3E-07 45.4 1.9 68 41-116 38-105 (143)
322 2jt1_A PEFI protein; solution 95.0 0.012 4.1E-07 40.5 2.3 44 45-93 9-57 (77)
323 3k69_A Putative transcription 95.0 0.03 1E-06 44.1 4.9 45 56-110 28-72 (162)
324 3cdh_A Transcriptional regulat 95.0 0.015 5.3E-07 44.6 3.2 68 41-116 44-111 (155)
325 2nnn_A Probable transcriptiona 94.9 0.014 4.8E-07 43.8 2.9 68 41-116 39-106 (140)
326 3eco_A MEPR; mutlidrug efflux 94.9 0.013 4.4E-07 44.1 2.6 70 41-116 32-101 (139)
327 1r1t_A Transcriptional repress 94.9 0.016 5.6E-07 43.3 3.2 47 40-93 46-92 (122)
328 1z7u_A Hypothetical protein EF 94.8 0.018 6.2E-07 42.2 3.1 79 20-116 11-90 (112)
329 3m4x_A NOL1/NOP2/SUN family pr 94.8 0.0085 2.9E-07 55.2 1.6 67 199-265 103-181 (456)
330 1jgs_A Multiple antibiotic res 94.8 0.017 5.7E-07 43.3 2.9 68 41-116 35-102 (138)
331 3bpv_A Transcriptional regulat 94.8 0.016 5.5E-07 43.4 2.8 68 41-116 30-97 (138)
332 3lwf_A LIN1550 protein, putati 94.8 0.027 9.3E-07 44.2 4.2 45 56-110 44-88 (159)
333 2eth_A Transcriptional regulat 94.8 0.022 7.6E-07 43.7 3.7 68 41-116 45-112 (154)
334 2hr3_A Probable transcriptiona 94.7 0.025 8.4E-07 42.9 3.9 69 40-116 35-104 (147)
335 2bv6_A MGRA, HTH-type transcri 94.7 0.014 4.9E-07 44.0 2.5 68 41-116 38-105 (142)
336 2nyx_A Probable transcriptiona 94.7 0.033 1.1E-06 43.6 4.6 68 41-116 46-113 (168)
337 2o0y_A Transcriptional regulat 94.7 0.011 3.7E-07 50.2 1.8 57 43-112 26-82 (260)
338 3kp7_A Transcriptional regulat 94.7 0.064 2.2E-06 40.9 6.1 67 42-116 40-107 (151)
339 1s3j_A YUSO protein; structura 94.7 0.027 9.2E-07 43.1 3.9 67 42-116 39-105 (155)
340 3s2w_A Transcriptional regulat 94.6 0.072 2.4E-06 41.0 6.4 66 43-116 53-118 (159)
341 3e6m_A MARR family transcripti 94.6 0.015 5E-07 45.2 2.3 68 41-116 54-121 (161)
342 3hsr_A HTH-type transcriptiona 94.6 0.0089 3E-07 45.3 1.0 68 41-116 37-104 (140)
343 2fa5_A Transcriptional regulat 94.6 0.017 6E-07 44.6 2.7 68 41-116 50-117 (162)
344 1z91_A Organic hydroperoxide r 94.6 0.019 6.7E-07 43.5 2.9 69 41-117 41-109 (147)
345 2rdp_A Putative transcriptiona 94.6 0.018 6.2E-07 43.8 2.7 67 42-116 44-110 (150)
346 2fu4_A Ferric uptake regulatio 94.6 0.017 5.9E-07 39.7 2.3 49 41-93 18-71 (83)
347 2lkp_A Transcriptional regulat 94.5 0.049 1.7E-06 40.0 5.0 47 40-93 32-78 (119)
348 3axs_A Probable N(2),N(2)-dime 94.5 0.017 5.9E-07 52.1 2.7 65 201-265 52-131 (392)
349 3jw4_A Transcriptional regulat 94.5 0.02 6.8E-07 43.7 2.7 69 42-116 43-111 (148)
350 1ylf_A RRF2 family protein; st 94.4 0.022 7.4E-07 44.1 2.9 61 34-111 14-74 (149)
351 2f2e_A PA1607; transcription f 94.4 0.028 9.4E-07 43.4 3.5 77 21-116 14-90 (146)
352 3bro_A Transcriptional regulat 94.4 0.026 8.9E-07 42.4 3.3 69 42-116 36-104 (141)
353 2lnb_A Z-DNA-binding protein 1 94.4 0.027 9.4E-07 38.3 2.9 55 42-109 21-75 (80)
354 2x4h_A Hypothetical protein SS 94.4 0.026 9.1E-07 42.6 3.3 47 56-115 31-77 (139)
355 2a61_A Transcriptional regulat 94.4 0.018 6E-07 43.6 2.3 68 41-116 34-101 (145)
356 3t8r_A Staphylococcus aureus C 94.4 0.034 1.2E-06 42.8 3.9 45 56-110 28-72 (143)
357 2qww_A Transcriptional regulat 94.4 0.02 6.8E-07 43.8 2.6 68 41-116 42-111 (154)
358 4hbl_A Transcriptional regulat 94.4 0.012 4.1E-07 45.0 1.3 68 41-116 42-109 (149)
359 2frh_A SARA, staphylococcal ac 94.4 0.018 6.3E-07 43.0 2.3 69 42-116 39-107 (127)
360 2zkz_A Transcriptional repress 94.3 0.02 6.9E-07 41.0 2.3 59 40-110 27-85 (99)
361 3bj6_A Transcriptional regulat 94.3 0.017 5.7E-07 44.1 2.0 67 42-116 42-108 (152)
362 2pex_A Transcriptional regulat 94.3 0.02 6.9E-07 43.8 2.4 69 41-117 48-116 (153)
363 1rjd_A PPM1P, carboxy methyl t 94.3 0.046 1.6E-06 48.1 5.0 55 201-255 97-178 (334)
364 1sfx_A Conserved hypothetical 94.3 0.026 9E-07 40.2 2.9 47 41-93 21-67 (109)
365 3b5i_A S-adenosyl-L-methionine 94.2 0.13 4.5E-06 46.0 7.9 63 202-264 53-155 (374)
366 1lj9_A Transcriptional regulat 94.2 0.023 7.8E-07 42.9 2.6 67 42-116 31-97 (144)
367 2fbh_A Transcriptional regulat 94.2 0.025 8.5E-07 42.7 2.8 66 42-115 39-105 (146)
368 3cjn_A Transcriptional regulat 94.2 0.021 7.3E-07 44.1 2.4 68 41-116 53-120 (162)
369 2h09_A Transcriptional regulat 94.0 0.044 1.5E-06 42.2 3.8 58 45-116 45-102 (155)
370 2fbi_A Probable transcriptiona 94.0 0.023 8E-07 42.6 2.2 68 41-116 37-104 (142)
371 3tgn_A ADC operon repressor AD 93.8 0.035 1.2E-06 42.0 2.8 67 41-116 39-105 (146)
372 3deu_A Transcriptional regulat 93.8 0.027 9.2E-07 44.1 2.2 68 41-116 54-122 (166)
373 3u2r_A Regulatory protein MARR 93.7 0.058 2E-06 42.0 4.2 70 41-116 47-116 (168)
374 3c6k_A Spermine synthase; sper 93.6 0.051 1.7E-06 48.7 4.0 54 201-255 205-273 (381)
375 3boq_A Transcriptional regulat 93.6 0.031 1E-06 43.1 2.3 67 42-116 49-116 (160)
376 4g6q_A Putative uncharacterize 93.6 0.19 6.6E-06 40.1 7.1 70 39-115 22-92 (182)
377 3f3x_A Transcriptional regulat 93.5 0.028 9.6E-07 42.5 1.8 67 41-116 38-104 (144)
378 1i4w_A Mitochondrial replicati 93.2 0.24 8.3E-06 43.9 7.7 54 202-255 59-116 (353)
379 3p8z_A Mtase, non-structural p 93.2 0.17 5.9E-06 42.3 6.2 74 190-264 68-149 (267)
380 2pn6_A ST1022, 150AA long hypo 93.1 0.064 2.2E-06 41.1 3.3 47 41-93 4-50 (150)
381 2pg4_A Uncharacterized protein 93.0 0.042 1.4E-06 38.7 2.0 63 45-116 20-83 (95)
382 4aik_A Transcriptional regulat 93.0 0.089 3.1E-06 40.5 4.0 68 42-116 33-100 (151)
383 2p4w_A Transcriptional regulat 92.9 0.079 2.7E-06 43.2 3.8 72 35-113 10-81 (202)
384 1bja_A Transcription regulator 92.9 0.078 2.7E-06 37.8 3.3 60 42-116 18-78 (95)
385 2qvo_A Uncharacterized protein 92.9 0.043 1.5E-06 38.8 1.9 52 56-116 30-81 (95)
386 2fxa_A Protease production reg 92.8 0.04 1.4E-06 45.0 1.9 67 42-116 50-116 (207)
387 2cfx_A HTH-type transcriptiona 92.8 0.078 2.7E-06 40.5 3.4 46 42-93 7-52 (144)
388 3nqo_A MARR-family transcripti 92.8 0.06 2.1E-06 43.0 2.9 73 39-117 40-112 (189)
389 3hrs_A Metalloregulator SCAR; 92.7 0.048 1.6E-06 44.8 2.3 50 56-117 20-69 (214)
390 2obp_A Putative DNA-binding pr 92.7 0.083 2.8E-06 37.8 3.2 53 56-116 36-88 (96)
391 2w25_A Probable transcriptiona 92.7 0.08 2.7E-06 40.6 3.4 47 41-93 8-54 (150)
392 3r0a_A Putative transcriptiona 92.6 0.052 1.8E-06 40.5 2.2 47 42-93 28-75 (123)
393 1xd7_A YWNA; structural genomi 92.5 0.094 3.2E-06 40.2 3.5 43 56-110 24-66 (145)
394 4b8x_A SCO5413, possible MARR- 92.4 0.035 1.2E-06 42.6 0.9 66 45-116 40-105 (147)
395 2p5v_A Transcriptional regulat 92.3 0.093 3.2E-06 40.9 3.4 47 41-93 11-57 (162)
396 2px2_A Genome polyprotein [con 92.3 0.12 4.1E-06 43.7 4.1 71 191-264 64-144 (269)
397 2dbb_A Putative HTH-type trans 92.3 0.11 3.6E-06 39.9 3.6 47 41-93 10-56 (151)
398 3u1d_A Uncharacterized protein 92.3 0.15 5.3E-06 39.5 4.5 73 41-117 30-106 (151)
399 2efj_A 3,7-dimethylxanthine me 92.2 0.14 4.9E-06 45.9 4.8 63 202-264 53-154 (384)
400 2cyy_A Putative HTH-type trans 92.2 0.089 3E-06 40.5 3.0 47 41-93 8-54 (151)
401 3i4p_A Transcriptional regulat 92.0 0.11 3.6E-06 40.7 3.3 47 41-93 4-50 (162)
402 2fbk_A Transcriptional regulat 92.0 0.047 1.6E-06 43.2 1.3 70 41-116 70-140 (181)
403 3lkd_A Type I restriction-modi 91.9 0.12 4E-06 48.6 4.1 65 201-265 221-303 (542)
404 1i1g_A Transcriptional regulat 91.9 0.1 3.4E-06 39.5 3.0 46 42-93 6-51 (141)
405 2dk5_A DNA-directed RNA polyme 91.8 0.11 3.6E-06 36.8 2.9 48 42-93 22-69 (91)
406 2e1c_A Putative HTH-type trans 91.8 0.12 4.1E-06 40.9 3.5 47 41-93 28-74 (171)
407 2d1h_A ST1889, 109AA long hypo 91.8 0.096 3.3E-06 37.2 2.7 34 56-93 36-69 (109)
408 2vn2_A DNAD, chromosome replic 91.7 0.11 3.8E-06 39.0 3.0 34 56-93 51-84 (128)
409 1q1h_A TFE, transcription fact 91.6 0.11 3.7E-06 37.6 2.8 47 42-93 20-66 (110)
410 2cg4_A Regulatory protein ASNC 91.6 0.1 3.5E-06 40.1 2.8 47 41-93 9-55 (152)
411 2ia0_A Putative HTH-type trans 91.5 0.13 4.4E-06 40.6 3.4 47 41-93 18-64 (171)
412 1p6r_A Penicillinase repressor 91.4 0.069 2.4E-06 36.5 1.5 51 41-93 10-60 (82)
413 4esf_A PADR-like transcription 91.4 0.19 6.5E-06 37.1 4.0 75 35-116 6-86 (117)
414 2qlz_A Transcription factor PF 91.4 0.066 2.2E-06 44.7 1.6 72 35-113 7-79 (232)
415 2k4b_A Transcriptional regulat 91.2 0.1 3.5E-06 37.5 2.3 50 42-93 37-86 (99)
416 3s1s_A Restriction endonucleas 91.2 0.18 6.2E-06 49.4 4.6 67 199-265 319-405 (878)
417 2ar0_A M.ecoki, type I restric 91.0 0.14 4.7E-06 48.1 3.6 73 192-265 161-267 (541)
418 3khk_A Type I restriction-modi 91.0 0.066 2.3E-06 50.3 1.4 63 203-265 246-335 (544)
419 1okr_A MECI, methicillin resis 90.8 0.046 1.6E-06 40.2 0.1 46 42-93 12-61 (123)
420 3evf_A RNA-directed RNA polyme 90.7 0.68 2.3E-05 39.5 7.3 35 199-233 72-106 (277)
421 1m6e_X S-adenosyl-L-methionnin 90.6 0.29 1E-05 43.4 5.1 65 200-264 50-144 (359)
422 2v79_A DNA replication protein 90.5 0.34 1.2E-05 36.7 4.7 53 56-112 51-103 (135)
423 3gcz_A Polyprotein; flavivirus 90.4 0.27 9.1E-06 42.1 4.5 43 191-234 81-123 (282)
424 2esh_A Conserved hypothetical 90.4 0.33 1.1E-05 35.7 4.6 73 36-116 9-90 (118)
425 1p4x_A Staphylococcal accessor 90.3 0.17 5.9E-06 42.6 3.2 70 41-116 159-228 (250)
426 1uly_A Hypothetical protein PH 90.2 0.22 7.6E-06 40.1 3.7 49 38-93 18-66 (192)
427 3f8b_A Transcriptional regulat 90.2 0.27 9.2E-06 36.2 3.8 76 34-116 6-89 (116)
428 2hoe_A N-acetylglucosamine kin 89.5 0.23 8E-06 44.1 3.6 77 32-115 12-89 (380)
429 4fx0_A Probable transcriptiona 89.3 0.16 5.6E-06 38.8 2.1 68 42-116 35-105 (148)
430 1ku9_A Hypothetical protein MJ 89.2 0.17 5.8E-06 38.0 2.1 44 44-93 30-74 (152)
431 3lkz_A Non-structural protein 88.9 0.51 1.7E-05 40.7 5.0 73 191-264 85-165 (321)
432 3hhh_A Transcriptional regulat 88.9 0.3 1E-05 36.0 3.2 76 34-116 7-88 (116)
433 3elk_A Putative transcriptiona 88.7 0.16 5.6E-06 37.5 1.7 77 34-117 8-90 (117)
434 1sfu_A 34L protein; protein/Z- 88.7 0.24 8.2E-06 33.6 2.3 51 47-109 22-72 (75)
435 2xvc_A ESCRT-III, SSO0910; cel 88.2 0.23 7.8E-06 31.6 1.8 46 42-92 12-57 (59)
436 2fe3_A Peroxide operon regulat 88.0 0.68 2.3E-05 35.3 4.9 48 41-93 23-75 (145)
437 1v4r_A Transcriptional repress 87.7 0.32 1.1E-05 34.6 2.7 50 38-93 17-68 (102)
438 1j5y_A Transcriptional regulat 87.6 0.38 1.3E-05 38.3 3.4 58 40-111 21-79 (187)
439 2o03_A Probable zinc uptake re 87.6 0.39 1.3E-05 36.0 3.2 50 39-93 10-64 (131)
440 2uyo_A Hypothetical protein ML 87.1 0.66 2.2E-05 40.2 4.8 75 177-255 80-164 (310)
441 1zkd_A DUF185; NESG, RPR58, st 87.0 2.7 9.2E-05 37.6 8.8 63 171-238 55-124 (387)
442 3cta_A Riboflavin kinase; stru 86.9 0.31 1E-05 40.2 2.5 53 56-117 27-79 (230)
443 1hsj_A Fusion protein consisti 86.8 0.32 1.1E-05 44.4 2.8 68 42-115 406-473 (487)
444 1xma_A Predicted transcription 86.4 0.28 9.4E-06 37.7 1.8 74 36-116 37-118 (145)
445 3k2z_A LEXA repressor; winged 86.0 0.54 1.9E-05 37.7 3.4 41 48-93 17-57 (196)
446 2yu3_A DNA-directed RNA polyme 85.9 0.31 1.1E-05 34.7 1.7 49 41-93 38-86 (95)
447 3i71_A Ethanolamine utilizatio 85.4 1.2 4.2E-05 28.3 4.0 51 46-110 9-59 (68)
448 1fx7_A Iron-dependent represso 85.1 0.35 1.2E-05 39.9 1.9 48 58-117 26-73 (230)
449 2zig_A TTHA0409, putative modi 85.1 1.3 4.4E-05 37.9 5.6 39 201-241 235-274 (297)
450 1sd4_A Penicillinase repressor 85.0 0.32 1.1E-05 35.7 1.5 51 41-93 11-61 (126)
451 3l7w_A Putative uncharacterize 84.8 0.5 1.7E-05 34.1 2.4 71 38-116 7-81 (108)
452 1yg2_A Gene activator APHA; vi 84.7 0.68 2.3E-05 36.6 3.4 69 41-116 3-79 (179)
453 2g9w_A Conserved hypothetical 84.6 0.46 1.6E-05 35.8 2.3 51 41-93 10-61 (138)
454 4esb_A Transcriptional regulat 84.6 0.37 1.3E-05 35.4 1.6 69 41-116 10-84 (115)
455 2o0m_A Transcriptional regulat 84.3 0.2 6.7E-06 44.2 0.0 61 42-117 22-82 (345)
456 3mwm_A ZUR, putative metal upt 83.9 1 3.6E-05 34.0 4.0 65 40-109 14-79 (139)
457 1z05_A Transcriptional regulat 83.7 0.92 3.1E-05 40.9 4.2 72 37-114 36-109 (429)
458 2vxz_A Pyrsv_GP04; viral prote 83.3 0.66 2.3E-05 35.6 2.6 44 43-93 14-57 (165)
459 2wk1_A NOVP; transferase, O-me 83.1 1 3.6E-05 38.4 4.1 33 201-233 106-143 (282)
460 1z6r_A MLC protein; transcript 83.1 1 3.5E-05 40.1 4.3 72 37-114 13-86 (406)
461 2xig_A Ferric uptake regulatio 82.4 1.1 3.7E-05 34.4 3.6 50 39-93 26-80 (150)
462 1jhg_A Trp operon repressor; c 81.5 1.2 4.1E-05 32.0 3.3 41 39-86 44-84 (101)
463 2qq9_A Diphtheria toxin repres 81.5 1 3.5E-05 37.0 3.4 50 56-117 24-73 (226)
464 1mzb_A Ferric uptake regulatio 81.5 1 3.4E-05 33.9 3.0 61 41-109 19-84 (136)
465 3eld_A Methyltransferase; flav 81.1 1.9 6.6E-05 37.0 5.0 36 199-234 79-114 (300)
466 3lmm_A Uncharacterized protein 80.9 0.84 2.9E-05 43.2 2.9 59 41-114 431-494 (583)
467 2p8t_A Hypothetical protein PH 80.3 0.8 2.7E-05 37.1 2.2 48 56-116 30-77 (200)
468 1p4x_A Staphylococcal accessor 79.5 1.1 3.9E-05 37.4 3.0 68 43-116 37-104 (250)
469 1bia_A BIRA bifunctional prote 79.2 1.5 5.2E-05 38.0 3.8 56 42-110 7-62 (321)
470 2pjp_A Selenocysteine-specific 78.7 1.1 3.8E-05 32.9 2.4 52 44-110 11-62 (121)
471 2py6_A Methyltransferase FKBM; 78.3 2.5 8.5E-05 38.0 5.1 34 200-233 225-260 (409)
472 3maj_A DNA processing chain A; 77.7 1.1 3.7E-05 40.1 2.4 53 42-109 330-382 (382)
473 3ri2_A Transcriptional regulat 76.8 2.5 8.7E-05 31.2 3.9 76 32-116 13-93 (123)
474 1cf7_A Protein (transcription 75.5 2.8 9.5E-05 28.3 3.5 45 46-93 20-64 (76)
475 2dql_A PEX protein; circadian 75.1 2.5 8.5E-05 30.8 3.4 65 45-116 27-99 (115)
476 2gqq_A Leucine-responsive regu 74.9 0.53 1.8E-05 36.5 -0.3 45 42-92 15-59 (163)
477 2w57_A Ferric uptake regulatio 74.4 1.5 5.2E-05 33.5 2.2 49 41-93 18-71 (150)
478 2zfw_A PEX; five alpha-helices 74.2 2.9 9.8E-05 32.1 3.7 65 45-116 49-121 (148)
479 3lmm_A Uncharacterized protein 73.9 0.66 2.3E-05 43.9 0.0 58 43-111 519-576 (583)
480 2w48_A Sorbitol operon regulat 73.9 3 0.0001 35.9 4.2 39 49-93 16-55 (315)
481 3rkx_A Biotin-[acetyl-COA-carb 73.9 2.3 7.8E-05 37.0 3.5 59 42-111 5-63 (323)
482 3eyy_A Putative iron uptake re 73.6 1.9 6.5E-05 32.8 2.6 51 41-93 20-71 (145)
483 2b0l_A GTP-sensing transcripti 73.5 0.72 2.5E-05 33.1 0.1 34 56-93 42-76 (102)
484 3eyi_A Z-DNA-binding protein 1 73.4 2.5 8.4E-05 28.0 2.6 46 42-93 12-58 (72)
485 2qy6_A UPF0209 protein YFCK; s 73.1 2.7 9.1E-05 35.3 3.6 33 201-233 60-104 (257)
486 2gau_A Transcriptional regulat 72.9 3.1 0.00011 33.3 3.9 34 56-93 180-213 (232)
487 2ld4_A Anamorsin; methyltransf 72.6 0.92 3.1E-05 35.0 0.5 51 199-265 10-69 (176)
488 3dv8_A Transcriptional regulat 72.5 2.5 8.6E-05 33.5 3.2 34 56-93 169-202 (220)
489 3dkw_A DNR protein; CRP-FNR, H 72.4 2.5 8.5E-05 33.7 3.2 34 56-93 178-211 (227)
490 2oz6_A Virulence factor regula 72.2 2 6.8E-05 33.7 2.5 34 56-93 164-197 (207)
491 3e97_A Transcriptional regulat 72.0 2.6 9.1E-05 33.7 3.3 34 56-93 175-208 (231)
492 3cuq_B Vacuolar protein-sortin 71.6 3.3 0.00011 33.9 3.7 34 56-93 168-201 (218)
493 3b02_A Transcriptional regulat 71.3 2.4 8.3E-05 33.1 2.8 34 56-93 139-172 (195)
494 2zcw_A TTHA1359, transcription 71.0 2.4 8.1E-05 33.3 2.7 34 56-93 146-179 (202)
495 3la7_A Global nitrogen regulat 70.9 2.8 9.5E-05 34.1 3.2 34 56-93 193-226 (243)
496 2p5k_A Arginine repressor; DNA 70.8 3.2 0.00011 26.2 2.8 37 45-90 10-51 (64)
497 3cvo_A Methyltransferase-like 70.4 16 0.00056 29.3 7.6 52 200-254 29-90 (202)
498 3tqn_A Transcriptional regulat 70.2 3.1 0.00011 30.0 3.0 34 56-93 32-66 (113)
499 2ek5_A Predicted transcription 69.9 4.3 0.00015 30.1 3.8 34 56-93 27-61 (129)
500 4ev0_A Transcription regulator 69.9 2.5 8.6E-05 33.3 2.6 34 56-93 163-196 (216)
No 1
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=8e-42 Score=309.91 Aligned_cols=261 Identities=52% Similarity=0.914 Sum_probs=220.7
Q ss_pred CCCCccccccccCCCcChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCC-CCCCCcchHHH
Q 046424 1 MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPT-NNKKAPIILDR 79 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~-~~~~~~~~l~r 79 (266)
|||..+++ .++|+++++..+++++++++.+++|++|++||||++|.+.|.+|+|++|||+++|+ .+|..+..|+|
T Consensus 5 ~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~r 80 (364)
T 3p9c_A 5 MGSTAADM----AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDR 80 (364)
T ss_dssp ------------CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHH
T ss_pred CCCCCCCc----cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHH
Confidence 78877773 66778999999999999999999999999999999999853238999999999995 22212338999
Q ss_pred HHHHHhcCCccccccccCCCCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhcc
Q 046424 80 MLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHN 159 (266)
Q Consensus 80 lLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~ 159 (266)
+||+|++.|+|++....+.+|..++.|++|+.+..|+.++++.++.+++.+.+.+.++..|.+|.+++++|.++|+.++
T Consensus 81 lLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~- 159 (364)
T 3p9c_A 81 ILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAY- 159 (364)
T ss_dssp HHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHH-
T ss_pred HHHHHHhCCCEEEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhc-
Confidence 9999999999998621111111136899999999988776667899988877677888999999999999999999999
Q ss_pred CCcchhccccChhHHHHHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhh
Q 046424 160 GMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239 (266)
Q Consensus 160 g~~~~~~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~ 239 (266)
|.++|+|+..+|+..+.|+++|...+....+.+++.+++|++..+|||||||+|.++..+++++|+++++++|+|++++.
T Consensus 160 g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 239 (364)
T 3p9c_A 160 GMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISE 239 (364)
T ss_dssp SSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT
T ss_pred CCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHh
Confidence 89999999999999999999999988877788899887688889999999999999999999999999999999999999
Q ss_pred CCCCCCceEEeccCCCCCCCCCEEEeC
Q 046424 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266 (266)
Q Consensus 240 a~~~~ri~~~~gD~f~~~P~~D~~~lk 266 (266)
++..+||+++.+|||+++|.+|+|+++
T Consensus 240 a~~~~~v~~~~~D~~~~~p~~D~v~~~ 266 (364)
T 3p9c_A 240 APQFPGVTHVGGDMFKEVPSGDTILMK 266 (364)
T ss_dssp CCCCTTEEEEECCTTTCCCCCSEEEEE
T ss_pred hhhcCCeEEEeCCcCCCCCCCCEEEeh
Confidence 998899999999999999988999874
No 2
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=4.1e-42 Score=310.62 Aligned_cols=238 Identities=21% Similarity=0.368 Sum_probs=210.5
Q ss_pred ChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccccc
Q 046424 17 DEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVS 96 (266)
Q Consensus 17 ~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~ 96 (266)
.++++..|++++.||+.+++|++|++|||||.|.+.+ +|+|++|||+++|+ +++.+.|+||+|++.|+|++..+.
T Consensus 5 e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~-~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~~ 79 (353)
T 4a6d_A 5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP-GPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETRG 79 (353)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS-SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC-CCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEeccC
Confidence 3478888999999999999999999999999998753 48999999999999 999999999999999999865321
Q ss_pred CCCCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhcc--CCcchhccccChhHH
Q 046424 97 NKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHN--GMDGFAAAAKDERIN 174 (266)
Q Consensus 97 ~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~--g~~~~~~~~~~p~~~ 174 (266)
+ .+.|++|+++..|+....+.++.+++.+.. +..+..|.+|.+++++++++|...++ +.++|+++.++|+..
T Consensus 80 ---~--~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 153 (353)
T 4a6d_A 80 ---G--KAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGER 153 (353)
T ss_dssp ---T--EEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHH
T ss_pred ---c--cceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHH
Confidence 1 678999999987766665678888887764 56778999999999999999999884 357899999999999
Q ss_pred HHHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC------CCCceE
Q 046424 175 NLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS------CPGVEH 248 (266)
Q Consensus 175 ~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~------~~ri~~ 248 (266)
..|+++|...+....+.+++.++ |++..+|||||||+|.++.+++++||+++++++|+|+|++.++. .+||++
T Consensus 154 ~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~ 232 (353)
T 4a6d_A 154 LQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDF 232 (353)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceee
Confidence 99999999998888889999999 99999999999999999999999999999999999999988753 289999
Q ss_pred EeccCCCC-CCCCCEEEeC
Q 046424 249 VGGDMFVE-VPKGQAIFMK 266 (266)
Q Consensus 249 ~~gD~f~~-~P~~D~~~lk 266 (266)
++||||++ .|.+|+|+|+
T Consensus 233 ~~gD~~~~~~~~~D~~~~~ 251 (353)
T 4a6d_A 233 QEGDFFKDPLPEADLYILA 251 (353)
T ss_dssp EESCTTTSCCCCCSEEEEE
T ss_pred ecCccccCCCCCceEEEee
Confidence 99999995 5556999985
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=3.4e-41 Score=306.16 Aligned_cols=264 Identities=55% Similarity=0.900 Sum_probs=218.0
Q ss_pred CCCCccccc--cccCCCcChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhc-CC-CCCCHHHHHhhCCCCCCCCcch
Q 046424 1 MGSLQDDHQ--VMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKA-SP-TQLSSSEIASQLPTNNKKAPII 76 (266)
Q Consensus 1 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~-g~-~~~t~~elA~~~~~~~~~~~~~ 76 (266)
|||+.+++. .| .+.++++++..+++++.|++.+++|++|++||||+.|.+. |+ +|+|++|||+++|..+|.+++.
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~ 79 (368)
T 3reo_A 1 MGSTGNAEIQIIP-THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVM 79 (368)
T ss_dssp -----------------CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHH
T ss_pred CCCcccccccccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhh
Confidence 788888864 34 6678899999999999999999999999999999999984 41 3799999999998312212348
Q ss_pred HHHHHHHHhcCCccccccccCCCCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhh
Q 046424 77 LDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMK 156 (266)
Q Consensus 77 l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~ 156 (266)
|+|+||+|++.|+|++......+|..+++|++|+.++.|+.++++.++++++.+.+.+.++..|.+|.+++++|.++|+.
T Consensus 80 l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~ 159 (368)
T 3reo_A 80 LDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNK 159 (368)
T ss_dssp HHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHH
Confidence 99999999999999985110011111368999999999987776678999988877778889999999999999999999
Q ss_pred hccCCcchhccccChhHHHHHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHH
Q 046424 157 AHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHV 236 (266)
Q Consensus 157 ~~~g~~~~~~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~v 236 (266)
++ |.++|+|+..+|+..+.|+++|...+....+.+++.+++|++..+|||||||+|.++..+++++|+++++++|+|++
T Consensus 160 ~~-g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~ 238 (368)
T 3reo_A 160 AY-GMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHV 238 (368)
T ss_dssp HS-SSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH
T ss_pred Hh-CCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHH
Confidence 99 89999999999999999999999988877778888887678889999999999999999999999999999999999
Q ss_pred HhhCCCCCCceEEeccCCCCCCCCCEEEeC
Q 046424 237 LKHAPSCPGVEHVGGDMFVEVPKGQAIFMK 266 (266)
Q Consensus 237 i~~a~~~~ri~~~~gD~f~~~P~~D~~~lk 266 (266)
++.++..+||+++.+|||+++|.+|+|+++
T Consensus 239 ~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~ 268 (368)
T 3reo_A 239 IQDAPAFSGVEHLGGDMFDGVPKGDAIFIK 268 (368)
T ss_dssp HTTCCCCTTEEEEECCTTTCCCCCSEEEEE
T ss_pred HHhhhhcCCCEEEecCCCCCCCCCCEEEEe
Confidence 999998899999999999999988999874
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=2.3e-37 Score=278.72 Aligned_cols=232 Identities=21% Similarity=0.260 Sum_probs=208.6
Q ss_pred cChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccc
Q 046424 16 RDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLV 95 (266)
Q Consensus 16 ~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~ 95 (266)
...++...++++++|++.+++|++|++||||+.|.+ | |+|++|||+++|+ +++.++|+||+|++.|+|++.
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~-g--~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~~-- 88 (348)
T 3lst_A 18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD-G--PRTPAELAAATGT----DADALRRVLRLLAVRDVVRES-- 88 (348)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT-S--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC-C--CCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEec--
Confidence 346788899999999999999999999999999986 4 9999999999999 999999999999999999984
Q ss_pred cCCCCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHH
Q 046424 96 SNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINN 175 (266)
Q Consensus 96 ~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~ 175 (266)
++.|++|+++..|..+++ .++.+++.+...+.++..|.+|++++++|+++|+..+ |.++|+|+.++|+..+
T Consensus 89 -------~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~-g~~~~~~~~~~~~~~~ 159 (348)
T 3lst_A 89 -------DGRFALTDKGAALRSDSP-VPARAGILMFTDTMFWTMSHRVASALGPERPAFADIF-GSSLDAYFDGDAEVEA 159 (348)
T ss_dssp -------TTEEEECTTTGGGSTTSS-SCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHH-SSCHHHHHTTCHHHHH
T ss_pred -------CCEEecCHHHHHHhcCCC-ccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHh-CCCHHHHHHhCHHHHH
Confidence 689999999998876543 5788888776666678999999999999999999988 8889999999999999
Q ss_pred HHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-----CCCceEEe
Q 046424 176 LFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-----CPGVEHVG 250 (266)
Q Consensus 176 ~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-----~~ri~~~~ 250 (266)
.|+++|...+....+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|+++...+. .+||+++.
T Consensus 160 ~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~ 238 (348)
T 3lst_A 160 LYYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVE 238 (348)
T ss_dssp HHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEE
T ss_pred HHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEe
Confidence 9999999998887888999998 98899999999999999999999999999999999998883321 26899999
Q ss_pred ccCCCCCCCCCEEEeC
Q 046424 251 GDMFVEVPKGQAIFMK 266 (266)
Q Consensus 251 gD~f~~~P~~D~~~lk 266 (266)
+|+|+++|..|+|+++
T Consensus 239 ~d~~~~~p~~D~v~~~ 254 (348)
T 3lst_A 239 GDFLREVPHADVHVLK 254 (348)
T ss_dssp CCTTTCCCCCSEEEEE
T ss_pred cCCCCCCCCCcEEEEe
Confidence 9999989944999873
No 5
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=1.3e-36 Score=274.70 Aligned_cols=247 Identities=30% Similarity=0.442 Sum_probs=212.2
Q ss_pred CcChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccc
Q 046424 15 ARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNL 94 (266)
Q Consensus 15 ~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~ 94 (266)
.+..++...+++++++++.+++|++|++||||+.|...+ +|+|++|||+++|+ +|.+++.++|+||+|++.|+|++..
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~-~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~ 82 (358)
T 1zg3_A 5 SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG-KPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTI 82 (358)
T ss_dssp SCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT-SCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC-CCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEec
Confidence 577888899999999999999999999999999998753 28999999999999 3334779999999999999999751
Q ss_pred cc-CC-CCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcC--CchhhhhccCCcchhccccC
Q 046424 95 VS-NK-DGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEG--SVPFMKAHNGMDGFAAAAKD 170 (266)
Q Consensus 95 ~~-~~-~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g--~~~f~~~~~g~~~~~~~~~~ 170 (266)
.. .+ +|..++.|++|+.+..|+.+++ .++.+++.+.+.+.++..|.+|+++++++ .++|+.++ |.++|+|+.++
T Consensus 83 ~~~~~~~g~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~-g~~~~~~~~~~ 160 (358)
T 1zg3_A 83 VKGKEGDEEEEIAYSLTPPSKLLISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECAT-GESFWDFLNKD 160 (358)
T ss_dssp ECCSSSSCCCEEEEEECHHHHTTCTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHH-SSCHHHHHTSG
T ss_pred ccccccCCCCCCEEeCCHHHHHHhCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHh-CCCHHHHHhcC
Confidence 00 00 0100378999999998886654 68899988876677889999999999998 78899888 88999999999
Q ss_pred hhHHH--HHHHHHHhcchhhHHHHHHHcc-CCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCce
Q 046424 171 ERINN--LFNQSMHNHTTIVMKEILEIYK-GFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVE 247 (266)
Q Consensus 171 p~~~~--~f~~~m~~~~~~~~~~i~~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~ 247 (266)
|+..+ .|+++|...+.... .+++.++ .|++..+|||||||+|.++..+++++|+++++++|+|.+++.++..++|+
T Consensus 161 p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~ 239 (358)
T 1zg3_A 161 SESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLN 239 (358)
T ss_dssp GGHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEE
T ss_pred hhhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcE
Confidence 99999 99999999887665 7888882 27788999999999999999999999999999999999999988777899
Q ss_pred EEeccCCCCCCCCCEEEeC
Q 046424 248 HVGGDMFVEVPKGQAIFMK 266 (266)
Q Consensus 248 ~~~gD~f~~~P~~D~~~lk 266 (266)
++.+|+|+++|..|+|+++
T Consensus 240 ~~~~d~~~~~~~~D~v~~~ 258 (358)
T 1zg3_A 240 FVGGDMFKSIPSADAVLLK 258 (358)
T ss_dssp EEECCTTTCCCCCSEEEEE
T ss_pred EEeCccCCCCCCceEEEEc
Confidence 9999999988877999874
No 6
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=6.3e-37 Score=278.08 Aligned_cols=231 Identities=22% Similarity=0.372 Sum_probs=208.8
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccC
Q 046424 18 EQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSN 97 (266)
Q Consensus 18 ~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~ 97 (266)
.+...++++++.+++.+++|++|++||||+.|.+ | |+|++|||+++|+ +++.++|+||+|++.|+|++..
T Consensus 36 ~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~-g--~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~~~--- 105 (369)
T 3gwz_A 36 AAAEETVNDILQGAWKARAIHVAVELGVPELLQE-G--PRTATALAEATGA----HEQTLRRLLRLLATVGVFDDLG--- 105 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT-S--CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEECS---
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEEeC---
Confidence 4667889999999999999999999999999986 4 9999999999999 9999999999999999999862
Q ss_pred CCCccccc-eecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHH
Q 046424 98 KDGSVQRL-YGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNL 176 (266)
Q Consensus 98 ~~~~~~~~-y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~ 176 (266)
++. |.+|++++.|..+.+ .++.+++.+...+..+..|.+|.++++++.++|...+ |.++|+|+.++|+..+.
T Consensus 106 -----~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~-g~~~~~~~~~~~~~~~~ 178 (369)
T 3gwz_A 106 -----HDDLFAQNALSAVLLPDPA-SPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVAN-GTSFWQLTHEDPKAREL 178 (369)
T ss_dssp -----STTEEECCHHHHTTSCCTT-CHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHH-SSCHHHHHHHCHHHHHH
T ss_pred -----CCceEecCHHHHHHhcCCc-hhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhc-CCCHHHHHHhCHHHHHH
Confidence 678 999999999865543 5788888877666677899999999999999999988 88899999999999999
Q ss_pred HHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEE
Q 046424 177 FNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHV 249 (266)
Q Consensus 177 f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~ 249 (266)
|+++|...+....+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++
T Consensus 179 f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~ 257 (369)
T 3gwz_A 179 FNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEIL 257 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEe
Confidence 999999988887788999998 88889999999999999999999999999999999999988764 2789999
Q ss_pred eccCCCCCCCC-CEEEeC
Q 046424 250 GGDMFVEVPKG-QAIFMK 266 (266)
Q Consensus 250 ~gD~f~~~P~~-D~~~lk 266 (266)
.+|+++++|.+ |+|+++
T Consensus 258 ~~d~~~~~p~~~D~v~~~ 275 (369)
T 3gwz_A 258 PGDFFETIPDGADVYLIK 275 (369)
T ss_dssp ECCTTTCCCSSCSEEEEE
T ss_pred ccCCCCCCCCCceEEEhh
Confidence 99999989965 999873
No 7
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=1.9e-36 Score=273.06 Aligned_cols=241 Identities=27% Similarity=0.395 Sum_probs=212.3
Q ss_pred CCcChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 14 PARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 14 ~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
+.|..++..++++++.+++.+++|++++++|||+.|...+ +++|++|||+++|+ +|.+++.++|+||+|++.|+|++.
T Consensus 10 ~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~-~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~ 87 (352)
T 1fp2_A 10 PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG-KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEII 87 (352)
T ss_dssp STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT-SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC-CCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEe
Confidence 4677889999999999999999999999999999998753 28999999999999 222377899999999999999976
Q ss_pred cccCCCCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHh-cCCchhhhhccCCcchhccccChh
Q 046424 94 LVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALL-EGSVPFMKAHNGMDGFAAAAKDER 172 (266)
Q Consensus 94 ~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~-~g~~~f~~~~~g~~~~~~~~~~p~ 172 (266)
. +| ++.|++|+.+..|+.+++ .++.+++.+...+.++..|.+|+++++ +|+++|+.++ |.++|+|+.++|+
T Consensus 88 ~----~~--~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~-g~~~~~~~~~~~~ 159 (352)
T 1fp2_A 88 T----KE--EESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTL-GSGFWDFLDKNPE 159 (352)
T ss_dssp E----SS--SEEEEECHHHHTTSTTSS-SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHH-SSCHHHHHHHCHH
T ss_pred c----CC--CCeEeCCHHHHHHhCCCC-ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHc-CCCHHHHHHhChH
Confidence 1 01 579999999998886654 578998887766777889999999999 8889999988 8899999999999
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHc--cCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEEe
Q 046424 173 INNLFNQSMHNHTTIVMKEILEIY--KGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVG 250 (266)
Q Consensus 173 ~~~~f~~~m~~~~~~~~~~i~~~~--~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~ 250 (266)
..+.|+++|...+....+. ++.+ + |++..+|||||||+|.++..+++++|+++++++|+|.+++.++..++|+++.
T Consensus 160 ~~~~f~~~m~~~~~~~~~~-~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 237 (352)
T 1fp2_A 160 YNTSFNDAMASDSKLINLA-LRDCDFV-FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVG 237 (352)
T ss_dssp HHHHHHHHHHHTHHHHHHH-HHTCHHH-HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEE
T ss_pred HHHHHHHHHHhcchhhhhH-HHhcccc-cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEe
Confidence 9999999999988776666 7777 4 7788999999999999999999999999999999999999998878899999
Q ss_pred ccCCCCCCCCCEEEeC
Q 046424 251 GDMFVEVPKGQAIFMK 266 (266)
Q Consensus 251 gD~f~~~P~~D~~~lk 266 (266)
+|+++++|..|+|+++
T Consensus 238 ~d~~~~~p~~D~v~~~ 253 (352)
T 1fp2_A 238 GDMFTSIPNADAVLLK 253 (352)
T ss_dssp CCTTTCCCCCSEEEEE
T ss_pred ccccCCCCCccEEEee
Confidence 9999988877999873
No 8
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=1.1e-35 Score=270.07 Aligned_cols=251 Identities=43% Similarity=0.732 Sum_probs=199.6
Q ss_pred CCcChHHHHHHH--HHHhhhhHHHHHHHHHhhChhHHHhhcCCCC---CCHHHHHhhCCCC--CCCCcchHHHHHHHHhc
Q 046424 14 PARDEQDFLLAM--ELASGAVLPMTIKSATELGLLEIMAKASPTQ---LSSSEIASQLPTN--NKKAPIILDRMLRLLAS 86 (266)
Q Consensus 14 ~~~~~~~~~~l~--~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~---~t~~elA~~~~~~--~~~~~~~l~rlLr~L~~ 86 (266)
..+..++...++ +++.+++.+++|++|++||||+.|.+.| +| +|++|||+++|++ +|.+++.++|+||+|++
T Consensus 16 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g-~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~ 94 (372)
T 1fp1_D 16 TSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKAT-PPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLAS 94 (372)
T ss_dssp ---CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCS-STTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcC-CCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhh
Confidence 345667788888 9999999999999999999999999753 14 9999999999981 33367899999999999
Q ss_pred CCccccccccCCCCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcC-CchhhhhccCCcchh
Q 046424 87 YSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEG-SVPFMKAHNGMDGFA 165 (266)
Q Consensus 87 ~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g-~~~f~~~~~g~~~~~ 165 (266)
.|+|++....+.+|...+.|++|+.+..|+.+++..++.+++.+...+.++..|.+|+++++++ +++|+.++ |.++|+
T Consensus 95 ~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~-g~~~~~ 173 (372)
T 1fp1_D 95 YSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVH-GVTKYE 173 (372)
T ss_dssp TTSEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------------
T ss_pred CCceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHh-CCCHHH
Confidence 9999975100001101258999999998876643247888888876677888999999999998 88999888 889999
Q ss_pred ccccChhHHHHHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCC
Q 046424 166 AAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPG 245 (266)
Q Consensus 166 ~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~r 245 (266)
|+.++|+..+.|+++|...+....+.+++.++.|++..+|||||||+|.++..+++++|+++++++|+|.+++.++..++
T Consensus 174 ~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~ 253 (372)
T 1fp1_D 174 FMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSG 253 (372)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTT
T ss_pred HHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCC
Confidence 99999999999999999988877778888886677889999999999999999999999999999999999999988789
Q ss_pred ceEEeccCCCCCCCCCEEEeC
Q 046424 246 VEHVGGDMFVEVPKGQAIFMK 266 (266)
Q Consensus 246 i~~~~gD~f~~~P~~D~~~lk 266 (266)
|+++.+|+++++|..|+|+++
T Consensus 254 v~~~~~d~~~~~~~~D~v~~~ 274 (372)
T 1fp1_D 254 IEHVGGDMFASVPQGDAMILK 274 (372)
T ss_dssp EEEEECCTTTCCCCEEEEEEE
T ss_pred CEEEeCCcccCCCCCCEEEEe
Confidence 999999999988877999863
No 9
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=7.5e-37 Score=273.43 Aligned_cols=228 Identities=21% Similarity=0.289 Sum_probs=202.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCC
Q 046424 21 FLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDG 100 (266)
Q Consensus 21 ~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~ 100 (266)
...+++++.|++.+++|++|++||||+.|.+ | |+|++|||+++|+ +++.++|+||+|++.|++++..
T Consensus 6 ~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~-g--~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~~------ 72 (332)
T 3i53_A 6 AHIGLRALADLATPMAVRVAATLRVADHIAA-G--HRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRDG------ 72 (332)
T ss_dssp CSSCHHHHTCCHHHHHHHHHHHHTHHHHHHT-T--CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHcChHHHHhc-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEecC------
Confidence 3457899999999999999999999999986 4 9999999999999 9999999999999999999862
Q ss_pred ccccceecchhcccccCCCCCCChHHHHHHhcCchhh-hhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHHHHH
Q 046424 101 SVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNM-DSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179 (266)
Q Consensus 101 ~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~f~~ 179 (266)
++.|.+|++++.|..+.+ .++.+++.+...+..+ ..|.+|.+++++++++|+..+ |.++|+|+.++|+..+.|++
T Consensus 73 --~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-g~~~~~~~~~~~~~~~~f~~ 148 (332)
T 3i53_A 73 --QGVYGLTEFGEQLRDDHA-AGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRY-GTSFWEDLGSDPVLSASFDT 148 (332)
T ss_dssp --TSBEEECTTGGGGSTTCT-TCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHH-SSCHHHHHHHCHHHHHHHHH
T ss_pred --CCeEEcCHhHHHHhcCCc-hhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhh-CCCHHHHHHhCHHHHHHHHH
Confidence 689999999999976543 5778887665434455 789999999999999999888 78899999999999999999
Q ss_pred HHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEEecc
Q 046424 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGGD 252 (266)
Q Consensus 180 ~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gD 252 (266)
+|...+....+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+||+++.+|
T Consensus 149 ~m~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d 227 (332)
T 3i53_A 149 LMSHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGS 227 (332)
T ss_dssp HHHHHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred HHHHhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCC
Confidence 999988776667788888 88889999999999999999999999999999999999998764 2789999999
Q ss_pred CCCCCCCC-CEEEeC
Q 046424 253 MFVEVPKG-QAIFMK 266 (266)
Q Consensus 253 ~f~~~P~~-D~~~lk 266 (266)
+++++|.. |+|+++
T Consensus 228 ~~~~~p~~~D~v~~~ 242 (332)
T 3i53_A 228 FFDPLPAGAGGYVLS 242 (332)
T ss_dssp TTSCCCCSCSEEEEE
T ss_pred CCCCCCCCCcEEEEe
Confidence 99989965 999874
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.2e-35 Score=265.65 Aligned_cols=226 Identities=25% Similarity=0.390 Sum_probs=203.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCC
Q 046424 19 QDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNK 98 (266)
Q Consensus 19 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~ 98 (266)
.+...+++++++++.+++|+++++||||+.|.+ | |+|++|||+++|+ +++.++|+||+|++.|+|++..
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~-~--~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~~---- 75 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES-G--IDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGDT---- 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT-T--CCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC-C--CCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEecC----
Confidence 677899999999999999999999999999976 4 8999999999999 9999999999999999999861
Q ss_pred CCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHHHH
Q 046424 99 DGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFN 178 (266)
Q Consensus 99 ~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~f~ 178 (266)
++.|++|+++..|. +. +.++.+++.+...+.+ ..|.+|++++++++++|+..+ |.++|+|+.++|+..+.|+
T Consensus 76 ----~~~y~~t~~s~~l~-~~-~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~-g~~~~~~~~~~~~~~~~f~ 147 (334)
T 2ip2_A 76 ----RDGYANTPTSHLLR-DV-EGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAF-GEDFYSYLKRCPDAGRRFL 147 (334)
T ss_dssp ----TTEEEECHHHHTTS-SS-TTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHH-SSCHHHHHHHCHHHHHHHH
T ss_pred ----CCeEecCHHHHHHh-CC-CccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhc-CCCHHHHHhhChHHHHHHH
Confidence 57899999999888 43 3578888887765544 899999999999999999888 8899999999999999999
Q ss_pred HHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCceEEec
Q 046424 179 QSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC-------PGVEHVGG 251 (266)
Q Consensus 179 ~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri~~~~g 251 (266)
++| ..+....+.+++.++ |++ .+|+|||||+|.++..+++++|+++++++|+|.+++.++.. +||+++.+
T Consensus 148 ~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 224 (334)
T 2ip2_A 148 LAM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGG 224 (334)
T ss_dssp HHH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEES
T ss_pred HHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecC
Confidence 999 887777788899888 888 99999999999999999999999999999999888877642 68999999
Q ss_pred cCCCCCCCC-CEEEeC
Q 046424 252 DMFVEVPKG-QAIFMK 266 (266)
Q Consensus 252 D~f~~~P~~-D~~~lk 266 (266)
|+++++|.+ |+|+++
T Consensus 225 d~~~~~~~~~D~v~~~ 240 (334)
T 2ip2_A 225 DMLQEVPSNGDIYLLS 240 (334)
T ss_dssp CTTTCCCSSCSEEEEE
T ss_pred CCCCCCCCCCCEEEEc
Confidence 999988876 999863
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=1.2e-34 Score=262.65 Aligned_cols=231 Identities=16% Similarity=0.209 Sum_probs=191.7
Q ss_pred CCcChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 14 PARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 14 ~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
+.+..++..+++++++|++.+++|+++++||||+.|.+.+ +|+|++|||+++|+ +++.++|+||+|++.|+|+++
T Consensus 9 ~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~-~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~~ 83 (363)
T 3dp7_A 9 QCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR-EGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILLE 83 (363)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT-TCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC-CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEec
Confidence 3456788999999999999999999999999999999832 29999999999999 999999999999999999876
Q ss_pred cccCCCCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhcc-CCcchhccccChh
Q 046424 94 LVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHN-GMDGFAAAAKDER 172 (266)
Q Consensus 94 ~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~-g~~~~~~~~~~p~ 172 (266)
+++|++|+.+..|+.+++ ....+.+ ..+.++.+|.+|++++++|++++..+++ ..++|+++.++|+
T Consensus 84 ---------~~~y~~t~~s~~L~~~~~---~~~~~~~-~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~ 150 (363)
T 3dp7_A 84 ---------EDRYVLAKAGWFLLNDKM---ARVNMEF-NHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPE 150 (363)
T ss_dssp ---------TTEEEECHHHHHHHHCHH---HHHHHHH-HHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCH
T ss_pred ---------CCEEecccchHHhhCCCc---ccchhee-ecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHH
Confidence 688999999988876542 2222333 2356788999999999999999888883 2789999999998
Q ss_pred HHH----HHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-----
Q 046424 173 INN----LFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC----- 243 (266)
Q Consensus 173 ~~~----~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~----- 243 (266)
..+ .|+++|..... ..+++.+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.+++.
T Consensus 151 ~~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~ 226 (363)
T 3dp7_A 151 QVQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLS 226 (363)
T ss_dssp HHHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcC
Confidence 766 36666665432 24455543 357799999999999999999999999999999999999887642
Q ss_pred --CCceEEeccCCCC---CCCC-CEEEeC
Q 046424 244 --PGVEHVGGDMFVE---VPKG-QAIFMK 266 (266)
Q Consensus 244 --~ri~~~~gD~f~~---~P~~-D~~~lk 266 (266)
+||+++.+|++++ +|.. |+|+++
T Consensus 227 ~~~~v~~~~~d~~~~~~~~p~~~D~v~~~ 255 (363)
T 3dp7_A 227 GSERIHGHGANLLDRDVPFPTGFDAVWMS 255 (363)
T ss_dssp TGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred cccceEEEEccccccCCCCCCCcCEEEEe
Confidence 5899999999994 6755 999873
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=1.2e-33 Score=256.10 Aligned_cols=231 Identities=19% Similarity=0.278 Sum_probs=204.5
Q ss_pred ChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccccc
Q 046424 17 DEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVS 96 (266)
Q Consensus 17 ~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~ 96 (266)
.+++...+++++.+++.+++|++++++|||+.|.. | ++|++|||+++|+ +++.++|+||+|++.|+|++..
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~--~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~~~-- 83 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA-G--ADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGGE-- 83 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT-T--CCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECCC--
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC-C--CCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEEeC--
Confidence 46677889999999999999999999999999965 4 8999999999999 9999999999999999999851
Q ss_pred CCCCcccc--ceecchhcccccCCCCCCChHHHHHHhcCchhh-hhhhhHHHHHhcCCchhhhhccCCcchhccccChhH
Q 046424 97 NKDGSVQR--LYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNM-DSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERI 173 (266)
Q Consensus 97 ~~~~~~~~--~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~ 173 (266)
++ .|.+|+++..|..+.+ .++..++.+...+..+ ..|.+|.+.++++.++|+..+ |.++|+++..+|+.
T Consensus 84 ------~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-g~~~~~~~~~~~~~ 155 (374)
T 1qzz_A 84 ------KQGRPLRPTRLGMLLADGHP-AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRY-GRPFWEDLSADVAL 155 (374)
T ss_dssp ------C-CCCCEECTTGGGGSTTCT-TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHH-SSCHHHHHHHCHHH
T ss_pred ------CCCeEEEEChHHHhhcCCCc-ccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhh-CCCHHHHHhhChHH
Confidence 45 8999999988886553 5788887765444566 899999999999999999888 88999999999999
Q ss_pred HHHHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCc
Q 046424 174 NNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC-------PGV 246 (266)
Q Consensus 174 ~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri 246 (266)
.+.|+++|........+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++.+ +||
T Consensus 156 ~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v 234 (374)
T 1qzz_A 156 ADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRV 234 (374)
T ss_dssp HHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTE
T ss_pred HHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCce
Confidence 999999999887776678888888 888899999999999999999999999999999999899877642 489
Q ss_pred eEEeccCCCCCCCC-CEEEe
Q 046424 247 EHVGGDMFVEVPKG-QAIFM 265 (266)
Q Consensus 247 ~~~~gD~f~~~P~~-D~~~l 265 (266)
+++.+|+++++|.+ |+|++
T Consensus 235 ~~~~~d~~~~~~~~~D~v~~ 254 (374)
T 1qzz_A 235 TVAEGDFFKPLPVTADVVLL 254 (374)
T ss_dssp EEEECCTTSCCSCCEEEEEE
T ss_pred EEEeCCCCCcCCCCCCEEEE
Confidence 99999999988886 99986
No 13
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=8.4e-33 Score=249.76 Aligned_cols=228 Identities=19% Similarity=0.316 Sum_probs=197.3
Q ss_pred cccCCCcChHHHHHHHHHHh-hhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCC
Q 046424 10 VMLKPARDEQDFLLAMELAS-GAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYS 88 (266)
Q Consensus 10 ~~~~~~~~~~~~~~l~~~~~-g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g 88 (266)
.+..+.|+.++..+++++++ |++.+++|+++++||||+.|.+ + |+|++|||+++|+ +++.++|+||+|++.|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~-~--~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g 92 (359)
T 1x19_A 20 HMMSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE-G--PKDLATLAADTGS----VPPRLEMLLETLRQMR 92 (359)
T ss_dssp EEECCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT-C--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTT
T ss_pred ccCCccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC-C--CCCHHHHHHHhCc----ChHHHHHHHHHHHhCC
Confidence 34577788899999999997 8999999999999999999986 4 8999999999999 9999999999999999
Q ss_pred ccccccccCCCCccccceecchhcccccCCCCC---CChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhccCCcchh
Q 046424 89 FLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDG---VSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFA 165 (266)
Q Consensus 89 ~l~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~ 165 (266)
+|++. ++.|++|+.+..++....+ .++.+++.+. .+.++..|.+|+++++++.+ |+
T Consensus 93 ll~~~---------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~-----------~~ 151 (359)
T 1x19_A 93 VINLE---------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN-----------FK 151 (359)
T ss_dssp SEEEE---------TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC-----------CC
T ss_pred CeEee---------CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC-----------Cc
Confidence 99987 5699999975544444434 5788888775 35677899999999987642 67
Q ss_pred ccccChh---HHHHHHHHHHhcch-hhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCC
Q 046424 166 AAAKDER---INNLFNQSMHNHTT-IVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAP 241 (266)
Q Consensus 166 ~~~~~p~---~~~~f~~~m~~~~~-~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~ 241 (266)
++..+|+ ..+.|+.+|...+. ...+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++
T Consensus 152 ~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~ 230 (359)
T 1x19_A 152 GQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVN 230 (359)
T ss_dssp CSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHH
T ss_pred ccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHH
Confidence 7888888 89999999999988 77788899998 8888999999999999999999999999999999998998876
Q ss_pred C-------CCCceEEeccCCC-CCCCCCEEEeC
Q 046424 242 S-------CPGVEHVGGDMFV-EVPKGQAIFMK 266 (266)
Q Consensus 242 ~-------~~ri~~~~gD~f~-~~P~~D~~~lk 266 (266)
. .+||+++.+|+++ ++|.+|+|+++
T Consensus 231 ~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~ 263 (359)
T 1x19_A 231 ENAAEKGVADRMRGIAVDIYKESYPEADAVLFC 263 (359)
T ss_dssp HHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEE
T ss_pred HHHHhcCCCCCEEEEeCccccCCCCCCCEEEEe
Confidence 3 2579999999998 56667999863
No 14
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=7.4e-33 Score=249.88 Aligned_cols=229 Identities=19% Similarity=0.281 Sum_probs=202.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCC
Q 046424 19 QDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNK 98 (266)
Q Consensus 19 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~ 98 (266)
....++++++.+++.+++|++++++|||+.|.. + ++|++|||+++|+ +++.++|+||+|++.|+|++..
T Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~-~--~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~~---- 86 (360)
T 1tw3_A 18 IDALRTLIRLGSLHTPMVVRTAATLRLVDHILA-G--ARTVKALAARTDT----RPEALLRLIRHLVAIGLLEEDA---- 86 (360)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT-T--CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE----
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC-C--CCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEecC----
Confidence 456778999999999999999999999999965 4 8999999999999 9999999999999999999852
Q ss_pred CCccccceecchhcccccCCCCCCChHHHHHHhcCch-hhhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHHH
Q 046424 99 DGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQV-NMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLF 177 (266)
Q Consensus 99 ~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~f 177 (266)
+++|++|+++..|..+.+ .++..++.+...+. .+..|.+|.+.++++.++|+..+ |.++|+++..+|+....|
T Consensus 87 ----~g~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~-g~~~~~~~~~~p~~~~~f 160 (360)
T 1tw3_A 87 ----PGEFVPTEVGELLADDHP-AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIY-GKPFYEDLAGRPDLRASF 160 (360)
T ss_dssp ----TTEEEECTTGGGGSTTST-TCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHH-SSCHHHHHHTCHHHHHHH
T ss_pred ----CCeEEeCHHHHHHhcCCc-hhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhc-CCCHHHHHHhChHHHHHH
Confidence 678999999988886553 57888776654333 56899999999999999998888 889999999999999999
Q ss_pred HHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCceEEe
Q 046424 178 NQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC-------PGVEHVG 250 (266)
Q Consensus 178 ~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri~~~~ 250 (266)
+.+|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++++ +||+++.
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~ 239 (360)
T 1tw3_A 161 DSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVE 239 (360)
T ss_dssp HHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEe
Confidence 99999888777778889888 888899999999999999999999999999999999888877642 4899999
Q ss_pred ccCCCCCCCC-CEEEe
Q 046424 251 GDMFVEVPKG-QAIFM 265 (266)
Q Consensus 251 gD~f~~~P~~-D~~~l 265 (266)
+|+++++|.+ |+|++
T Consensus 240 ~d~~~~~~~~~D~v~~ 255 (360)
T 1tw3_A 240 GDFFEPLPRKADAIIL 255 (360)
T ss_dssp CCTTSCCSSCEEEEEE
T ss_pred CCCCCCCCCCccEEEE
Confidence 9999988886 99886
No 15
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=3.7e-32 Score=244.61 Aligned_cols=226 Identities=17% Similarity=0.253 Sum_probs=188.0
Q ss_pred CCCcChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 046424 13 KPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTC 92 (266)
Q Consensus 13 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~ 92 (266)
.+.+.+..+..+++++.+++.+++|++|+++|||+.|.. |+|++|||+++|+ +++.++|+||+|++.|+|++
T Consensus 17 ~~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~----~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~ 88 (352)
T 3mcz_A 17 EDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT----GRTPAEVAASFGM----VEGKAAILLHALAALGLLTK 88 (352)
T ss_dssp CSCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS----CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC----CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEe
Confidence 344455566669999999999999999999999999953 8999999999999 99999999999999999998
Q ss_pred ccccCCCCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCch-hhhhccCCcchhccccCh
Q 046424 93 NLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVP-FMKAHNGMDGFAAAAKDE 171 (266)
Q Consensus 93 ~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~-f~~~~~g~~~~~~~~~~p 171 (266)
. ++.|.+|+.+..++.+..+.+++.++.+. ..++..|.+|++++++|.+. |+.. .++..+|
T Consensus 89 ~---------~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~-------~~~~~~~ 150 (352)
T 3mcz_A 89 E---------GDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE-------SRFAHDT 150 (352)
T ss_dssp E---------TTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH-------HHTTTCH
T ss_pred c---------CCeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc-------cccccCH
Confidence 7 57899999998766555556788877654 35678999999999998654 2322 1235689
Q ss_pred hHHHHHHHHHHhcchhhHHHHHHHccCCCC-CceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------
Q 046424 172 RINNLFNQSMHNHTTIVMKEILEIYKGFEG-LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC------- 243 (266)
Q Consensus 172 ~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~-~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~------- 243 (266)
+..+.|+++|...... ...+++.++ +++ ..+|||||||+|.++..+++++|+++++++|+|.+++.++..
T Consensus 151 ~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~ 228 (352)
T 3mcz_A 151 RARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLG 228 (352)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCC
Confidence 9999999999983322 337888888 776 899999999999999999999999999999999988876642
Q ss_pred CCceEEeccCCCC---CCCC-CEEEeC
Q 046424 244 PGVEHVGGDMFVE---VPKG-QAIFMK 266 (266)
Q Consensus 244 ~ri~~~~gD~f~~---~P~~-D~~~lk 266 (266)
+||+++.+|++++ .|.+ |+|+++
T Consensus 229 ~~v~~~~~d~~~~~~~~~~~~D~v~~~ 255 (352)
T 3mcz_A 229 GRVEFFEKNLLDARNFEGGAADVVMLN 255 (352)
T ss_dssp GGEEEEECCTTCGGGGTTCCEEEEEEE
T ss_pred CceEEEeCCcccCcccCCCCccEEEEe
Confidence 5899999999994 5665 999873
No 16
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.98 E-value=1e-31 Score=239.76 Aligned_cols=220 Identities=15% Similarity=0.169 Sum_probs=193.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCC
Q 046424 21 FLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDG 100 (266)
Q Consensus 21 ~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~ 100 (266)
.+.+++++.+++.+++|++++++|||+.|.+ | |+|++|||+++|+ +++.++|+||+|++.|+|++.
T Consensus 7 ~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~--~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~------- 72 (335)
T 2r3s_A 7 PALFFNTVNAYQRSAAIKAAVELNVFTAISQ-G--IESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQ------- 72 (335)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHTTHHHHHTT-S--EECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHhc-C--CCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEec-------
Confidence 3679999999999999999999999999986 4 8999999999999 999999999999999999875
Q ss_pred ccccceecchhc-ccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHHHHH
Q 046424 101 SVQRLYGLTPVS-KYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179 (266)
Q Consensus 101 ~~~~~y~~t~~s-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~f~~ 179 (266)
++.|++|+++ ..+..+. +.++.+++.+...+..+..|.+|.+.++++.++|+ . |+++.++|+..+.|++
T Consensus 73 --~~~y~~t~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~------~-~~~~~~~~~~~~~~~~ 142 (335)
T 2r3s_A 73 --AEGYRLTSDSAMFLDRQS-KFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS------S-EGTLSPEHPVWVQFAK 142 (335)
T ss_dssp --TTEEEECHHHHHHTCTTS-TTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST------T-TGGGSTTCTHHHHHHH
T ss_pred --CCEEecCHHHHHHhccCC-cHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC------C-cccccCCHHHHHHHHH
Confidence 6899999999 4565544 35788888877555778899999999999877643 3 7888888999999999
Q ss_pred HHHhcchhhHHHHHHHccCC--CCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCceEEe
Q 046424 180 SMHNHTTIVMKEILEIYKGF--EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC-------PGVEHVG 250 (266)
Q Consensus 180 ~m~~~~~~~~~~i~~~~~~~--~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri~~~~ 250 (266)
.|...+....+.+++.++ + .+..+|+|||||+|.++..+++++|+.+++++|++.+++.++.. +||+++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~ 221 (335)
T 2r3s_A 143 AMSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIA 221 (335)
T ss_dssp HSGGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred HHHHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEe
Confidence 999988877778888888 7 78899999999999999999999999999999999888877642 5799999
Q ss_pred ccCCC-CCCCC-CEEEe
Q 046424 251 GDMFV-EVPKG-QAIFM 265 (266)
Q Consensus 251 gD~f~-~~P~~-D~~~l 265 (266)
+|+++ ++|.+ |+|++
T Consensus 222 ~d~~~~~~~~~~D~v~~ 238 (335)
T 2r3s_A 222 GSAFEVDYGNDYDLVLL 238 (335)
T ss_dssp SCTTTSCCCSCEEEEEE
T ss_pred cccccCCCCCCCcEEEE
Confidence 99998 67776 99986
No 17
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.27 E-value=1.5e-11 Score=111.26 Aligned_cols=183 Identities=11% Similarity=0.028 Sum_probs=115.3
Q ss_pred ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccCCCCCCC
Q 046424 44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVS 123 (266)
Q Consensus 44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~ 123 (266)
++|..| . + |.|+.|||..+|+ +++.++++|+.|.+.|+++.. ++ |++|+.+..++...+..+
T Consensus 47 ~ll~~L-~-~--~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~---------~~-~~lt~~~~~~l~~~~~~~ 108 (373)
T 2qm3_A 47 NVLSAV-L-A--SDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFE---------DG-VKLTEKGEELVAEYGIGK 108 (373)
T ss_dssp HHHHHH-H-H--CSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECS---------SS-SEECHHHHHHHHHHTCCC
T ss_pred HHHHHh-c-C--CCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEEC---------CC-EEECHHHHHHHHhcCccc
Confidence 779999 4 3 8999999999999 999999999999999999864 44 999987665543221111
Q ss_pred hHHHHH-HhcC-----chhhhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHHHHHHHHhcchhhHHHHHHHcc
Q 046424 124 LAPTLL-IIQD-----QVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYK 197 (266)
Q Consensus 124 ~~~~~~-~~~~-----~~~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~~~ 197 (266)
..+.+. ...+ ..+...|..+.+.++....+ ...|+.....++ ....+.+ .... ..
T Consensus 109 ~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~l---------~~~~-~~ 169 (373)
T 2qm3_A 109 RYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEP-------LHEFDQAYVTPE--TTVARVI---------LMHT-RG 169 (373)
T ss_dssp CCC------------CGGGHHHHHHHHHHHTTCCCC-------CGGGTCCCBCHH--HHHHHHH---------HHHH-TT
T ss_pred cccccchhhcCCCcchhhhHHHHHHHHHHHhcCCcc-------chhcCCeecCHH--HHHHHHH---------HHhh-cC
Confidence 111110 0000 11112344455555432211 111211111121 1111111 0011 11
Q ss_pred CCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCC----C-CEEEe
Q 046424 198 GFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPK----G-QAIFM 265 (266)
Q Consensus 198 ~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~----~-D~~~l 265 (266)
.....+|+||| |+|.++..+++..|+.+++++|+ |.+++.++++ ++|+++.+|+++++|. . |+|++
T Consensus 170 -~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 170 -DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp -CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred -CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEE
Confidence 12358999999 99999999999999899999999 7888877653 4899999999986653 4 99986
No 18
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.53 E-value=6.7e-08 Score=80.13 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=52.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCC-CCCC-C-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFV-EVPK-G-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~-~~P~-~-D~~~l 265 (266)
...+|+|||||+|.++..+++..| +++++|+ |.+++.++.. ++++++.+|+.+ ++|. . |+++.
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 109 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIF 109 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEE
Confidence 468999999999999999999988 8999999 6677776542 789999999998 6665 3 98875
No 19
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=98.50 E-value=3.9e-07 Score=76.05 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=59.1
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEEeccCCC-CCCCC-CEE
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----CPGVEHVGGDMFV-EVPKG-QAI 263 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gD~f~-~~P~~-D~~ 263 (266)
.+++.+.......+|||||||+|.++..+++++|+.+++++|+ |..++.++. .++++++.+|+.+ +.+.. |++
T Consensus 34 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v 113 (234)
T 3dtn_A 34 VSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMV 113 (234)
T ss_dssp HHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEE
T ss_pred HHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEE
Confidence 3444443223568999999999999999999999999999999 667766543 3589999999998 56544 998
Q ss_pred Ee
Q 046424 264 FM 265 (266)
Q Consensus 264 ~l 265 (266)
+.
T Consensus 114 ~~ 115 (234)
T 3dtn_A 114 VS 115 (234)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 20
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=98.42 E-value=3.8e-07 Score=78.32 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=54.7
Q ss_pred CCCCceEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCC-CCCCCCEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKY--PQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFV-EVPKGQAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~--P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~~P~~D~~~l 265 (266)
.+...+|+|||||+|.++..+++++ |+++++++|+ |..++.|+. ..+|+++.+|+.+ +++..|++++
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~ 145 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVL 145 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccccccccee
Confidence 3466899999999999999999985 6889999998 567776653 2589999999988 6665687764
No 21
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=98.37 E-value=9.6e-07 Score=72.23 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=59.8
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCC--CC-
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVP--KG- 260 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P--~~- 260 (266)
.++..++ .....+|+|||||+|.++..+++.+|+.+++++|+ |..++.++.+ ++++++.+|+.+..+ ..
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 3455555 56678999999999999999999999999999999 6677766542 689999999988544 23
Q ss_pred CEEEe
Q 046424 261 QAIFM 265 (266)
Q Consensus 261 D~~~l 265 (266)
|++++
T Consensus 110 D~i~~ 114 (204)
T 3e05_A 110 DRVFI 114 (204)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 98875
No 22
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=98.36 E-value=4.9e-07 Score=77.84 Aligned_cols=74 Identities=15% Similarity=0.047 Sum_probs=57.0
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCCCCCC-
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVEVPKG- 260 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~P~~- 260 (266)
.+++.++ .....+|+|+|||+|.++..+++. +|..+++++|+ |..++.++. .++++++.+|+.+++|.+
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4455555 666789999999999999999998 89999999999 666665543 257999999999977753
Q ss_pred -CEEEe
Q 046424 261 -QAIFM 265 (266)
Q Consensus 261 -D~~~l 265 (266)
|++++
T Consensus 180 fD~Vi~ 185 (275)
T 1yb2_A 180 YDAVIA 185 (275)
T ss_dssp EEEEEE
T ss_pred ccEEEE
Confidence 98875
No 23
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=98.35 E-value=1.9e-06 Score=73.38 Aligned_cols=73 Identities=15% Similarity=0.219 Sum_probs=59.6
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCCCCceEEeccCCC-CCCCC--CEEEe
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSCPGVEHVGGDMFV-EVPKG--QAIFM 265 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~~ri~~~~gD~f~-~~P~~--D~~~l 265 (266)
..+++.++ .....+|||||||+|.++..+++ |..+++++|+. ..++.++...+++++.+|+.+ ++|.+ |+++.
T Consensus 24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (261)
T 3ege_A 24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVIS 100 (261)
T ss_dssp HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEE
T ss_pred HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEE
Confidence 34555555 55678999999999999999998 78899999994 577777776799999999987 66653 99875
No 24
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=98.34 E-value=1.3e-06 Score=76.40 Aligned_cols=75 Identities=16% Similarity=0.124 Sum_probs=58.6
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCCCC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVPKG 260 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~~ 260 (266)
..+++.++.+....+|||||||.|.++..+++++ ..+++++|+ |..++.++.+ ++|+++.+|+.+ ++|.+
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 184 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKG 184 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCC
Confidence 4455555434567899999999999999999986 678999999 5677766541 589999999998 66654
Q ss_pred --CEEEe
Q 046424 261 --QAIFM 265 (266)
Q Consensus 261 --D~~~l 265 (266)
|+++.
T Consensus 185 ~fD~V~~ 191 (312)
T 3vc1_A 185 AVTASWN 191 (312)
T ss_dssp CEEEEEE
T ss_pred CEeEEEE
Confidence 99874
No 25
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=98.33 E-value=3e-07 Score=77.89 Aligned_cols=74 Identities=15% Similarity=0.140 Sum_probs=61.1
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCCC-
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPKG- 260 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~~- 260 (266)
.++..++ .....+|+|||||+|.++..+++. .|..+++++|+ |..++.++.+ +|++++.+|+.+.+|.+
T Consensus 84 ~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 162 (255)
T 3mb5_A 84 LIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEEN 162 (255)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCS
T ss_pred HHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCC
Confidence 4555555 667789999999999999999999 89999999999 5677766542 56999999999887764
Q ss_pred -CEEEe
Q 046424 261 -QAIFM 265 (266)
Q Consensus 261 -D~~~l 265 (266)
|++++
T Consensus 163 ~D~v~~ 168 (255)
T 3mb5_A 163 VDHVIL 168 (255)
T ss_dssp EEEEEE
T ss_pred cCEEEE
Confidence 98875
No 26
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=98.33 E-value=5.3e-07 Score=73.93 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=57.0
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCCCC-
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVPKG- 260 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~~- 260 (266)
.+++.++ .+. .+|||||||+|.++..++++ |..+++++|+ |..++.++.. ++++++.+|+.+ ++|.+
T Consensus 35 ~~~~~~~-~~~-~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 111 (219)
T 3dlc_A 35 NIINRFG-ITA-GTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNY 111 (219)
T ss_dssp HHHHHHC-CCE-EEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTC
T ss_pred HHHHhcC-CCC-CEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCccc
Confidence 3445444 433 39999999999999999999 8899999999 6677666542 589999999998 77754
Q ss_pred -CEEEe
Q 046424 261 -QAIFM 265 (266)
Q Consensus 261 -D~~~l 265 (266)
|+++.
T Consensus 112 ~D~v~~ 117 (219)
T 3dlc_A 112 ADLIVS 117 (219)
T ss_dssp EEEEEE
T ss_pred ccEEEE
Confidence 98875
No 27
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=98.30 E-value=9.5e-07 Score=72.96 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=54.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC-C--CCCC--CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV-E--VPKG--QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~--~P~~--D~~~l 265 (266)
...+|+|||||+|.++..+++.+|+.+++++|+ |..++.++. .++|+++.+|+.+ + +|.+ |++++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~ 117 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYL 117 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence 457899999999999999999999999999999 567776654 2689999999987 3 5553 88875
No 28
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=98.29 E-value=8.5e-07 Score=73.10 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=61.0
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC------CCceEEeccCCC-CCCCC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFV-EVPKG 260 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~-~~P~~ 260 (266)
..+++.++ .....+|||||||+|.++..+++.. |+.+++++|+ |..++.++.. ++++++.+|+.+ +++.+
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 35566665 6677899999999999999999997 8899999999 5677766542 589999999988 66654
Q ss_pred --CEEEe
Q 046424 261 --QAIFM 265 (266)
Q Consensus 261 --D~~~l 265 (266)
|+++.
T Consensus 106 ~fD~v~~ 112 (219)
T 3dh0_A 106 TVDFIFM 112 (219)
T ss_dssp CEEEEEE
T ss_pred CeeEEEe
Confidence 99875
No 29
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=98.28 E-value=2.4e-06 Score=70.55 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=51.9
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhh----CCC------CCCceEEeccCCC-CCCCC-CEEE
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKH----APS------CPGVEHVGGDMFV-EVPKG-QAIF 264 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~----a~~------~~ri~~~~gD~f~-~~P~~-D~~~ 264 (266)
.....+|||||||+|.++..+++.+|+.+++++|+.+ .++. ++. .++|+++.+|+.+ +++.+ |.++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~ 103 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELH 103 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEE
Confidence 4466899999999999999999999999999999954 3332 322 2589999999998 55543 5554
No 30
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=98.27 E-value=3.4e-06 Score=69.15 Aligned_cols=74 Identities=20% Similarity=0.230 Sum_probs=57.4
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC--CCceEEeccCCCCCCCC--CEEE
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC--PGVEHVGGDMFVEVPKG--QAIF 264 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~--~ri~~~~gD~f~~~P~~--D~~~ 264 (266)
..+++.+.......+|+|||||+|.++..+++. ..+++++|+ |..++.++.. ++++++.+|+.+..|.+ |+++
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 344555543445679999999999999999999 668999998 5677776642 68999999999865543 9887
Q ss_pred e
Q 046424 265 M 265 (266)
Q Consensus 265 l 265 (266)
.
T Consensus 113 ~ 113 (218)
T 3ou2_A 113 F 113 (218)
T ss_dssp E
T ss_pred E
Confidence 5
No 31
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=98.25 E-value=1.6e-06 Score=73.84 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=56.7
Q ss_pred HHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCCCC--C
Q 046424 193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVPKG--Q 261 (266)
Q Consensus 193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~~--D 261 (266)
++.++......+|||||||+|.++..+++. |..+++++|+ |..++.++.. ++|+++.+|+.+ ++|.+ |
T Consensus 38 l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 116 (267)
T 3kkz_A 38 LSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELD 116 (267)
T ss_dssp HTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEE
T ss_pred HHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEE
Confidence 343332456789999999999999999998 8899999999 5566665531 679999999987 66654 9
Q ss_pred EEEe
Q 046424 262 AIFM 265 (266)
Q Consensus 262 ~~~l 265 (266)
+++.
T Consensus 117 ~i~~ 120 (267)
T 3kkz_A 117 LIWS 120 (267)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
No 32
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=98.24 E-value=2e-06 Score=72.54 Aligned_cols=73 Identities=14% Similarity=0.197 Sum_probs=56.6
Q ss_pred HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCC-CCCCC--
Q 046424 192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFV-EVPKG-- 260 (266)
Q Consensus 192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~~P~~-- 260 (266)
++..+.......+|||||||+|.++..+++.+|. +++++|+ |..++.++. .+||+++.+|+.+ ++|.+
T Consensus 37 ~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 115 (257)
T 3f4k_A 37 AVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEEL 115 (257)
T ss_dssp HHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCE
T ss_pred HHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCE
Confidence 3444432456689999999999999999999996 9999999 556666543 1579999999977 66643
Q ss_pred CEEEe
Q 046424 261 QAIFM 265 (266)
Q Consensus 261 D~~~l 265 (266)
|+++.
T Consensus 116 D~v~~ 120 (257)
T 3f4k_A 116 DLIWS 120 (257)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99874
No 33
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.24 E-value=9e-07 Score=74.28 Aligned_cols=65 Identities=11% Similarity=-0.028 Sum_probs=54.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCceEEeccCCCCCCC---CCEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFVEVPK---GQAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~~~P~---~D~~~l 265 (266)
...+|+|||||+|..++.+++.+|..+++.+|+. ..++.|+.+ ++|++..+|.++++|. .|++++
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~Ivi 90 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITI 90 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEE
Confidence 5589999999999999999999999999999995 466665542 5899999999998774 388764
No 34
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=98.24 E-value=1.7e-06 Score=73.16 Aligned_cols=73 Identities=21% Similarity=0.378 Sum_probs=58.2
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----CCceEEeccCCC-CCCCC--CE
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC----PGVEHVGGDMFV-EVPKG--QA 262 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~ri~~~~gD~f~-~~P~~--D~ 262 (266)
.+++.++ .....+|||||||+|.++..+++++ ..+++++|+ |..++.++.. ++|+++.+|+.+ ++|.+ |+
T Consensus 46 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 123 (266)
T 3ujc_A 46 KILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDL 123 (266)
T ss_dssp HHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEE
T ss_pred HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEE
Confidence 4445454 5567899999999999999999988 789999999 4566665532 689999999998 67654 99
Q ss_pred EEe
Q 046424 263 IFM 265 (266)
Q Consensus 263 ~~l 265 (266)
++.
T Consensus 124 v~~ 126 (266)
T 3ujc_A 124 IYS 126 (266)
T ss_dssp EEE
T ss_pred EeH
Confidence 875
No 35
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=98.23 E-value=2.8e-06 Score=72.39 Aligned_cols=74 Identities=14% Similarity=0.260 Sum_probs=58.8
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCC-CCCCC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFV-EVPKG 260 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~~P~~ 260 (266)
..+++.++ .....+|||||||.|.++..+++++ ..+++++|+ |..++.++. .++++++.+|+.+ ++|.+
T Consensus 51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 128 (273)
T 3bus_A 51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA 128 (273)
T ss_dssp HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence 35566665 6667899999999999999999987 689999999 556665543 2589999999998 67654
Q ss_pred --CEEEe
Q 046424 261 --QAIFM 265 (266)
Q Consensus 261 --D~~~l 265 (266)
|+++.
T Consensus 129 ~fD~v~~ 135 (273)
T 3bus_A 129 SFDAVWA 135 (273)
T ss_dssp CEEEEEE
T ss_pred CccEEEE
Confidence 98874
No 36
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=98.23 E-value=1.5e-06 Score=73.67 Aligned_cols=74 Identities=24% Similarity=0.344 Sum_probs=58.0
Q ss_pred HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC-CCCCC
Q 046424 189 MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV-EVPKG 260 (266)
Q Consensus 189 ~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~P~~ 260 (266)
...+++.++ .....+|||||||+|.++..++++.+ +++++|+ |..++.++. .++++++.+|+.+ ++|.+
T Consensus 26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~ 102 (260)
T 1vl5_A 26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 102 (260)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence 345666665 55678999999999999999999987 8999998 557766553 2679999999988 77753
Q ss_pred --CEEEe
Q 046424 261 --QAIFM 265 (266)
Q Consensus 261 --D~~~l 265 (266)
|+++.
T Consensus 103 ~fD~V~~ 109 (260)
T 1vl5_A 103 RFHIVTC 109 (260)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 99874
No 37
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=98.22 E-value=2.3e-06 Score=74.39 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=36.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCC
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAP 241 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~ 241 (266)
...+|||||||+|.++..+++++|..+++++|+ |..++.|+
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~ 87 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSAR 87 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHH
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 568999999999999999999999999999999 45666554
No 38
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=98.22 E-value=1.8e-06 Score=74.49 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=57.5
Q ss_pred HHHHccCCCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCCC-----CCceEEeccCCC-CCCCC-CE
Q 046424 192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFV-EVPKG-QA 262 (266)
Q Consensus 192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~-~~P~~-D~ 262 (266)
+++.+.......+|||||||+|.++..+++.+|+ .+++++|+ |..++.++.. .+++++.+|+.+ +.+.. |+
T Consensus 13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 92 (284)
T 3gu3_A 13 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDI 92 (284)
T ss_dssp HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEE
T ss_pred HHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeE
Confidence 3444322556789999999999999999999995 89999999 5566655431 389999999998 55555 98
Q ss_pred EEe
Q 046424 263 IFM 265 (266)
Q Consensus 263 ~~l 265 (266)
++.
T Consensus 93 v~~ 95 (284)
T 3gu3_A 93 AIC 95 (284)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 39
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=98.21 E-value=3.6e-06 Score=70.99 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=57.5
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCCCC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVPKG 260 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~~ 260 (266)
..+++.++ .....+|||||||+|.++..+++.+ ..+++++|+ |..++.++.. ++|+++.+|+.+ +.+..
T Consensus 26 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 103 (256)
T 1nkv_A 26 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK 103 (256)
T ss_dssp HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCC
Confidence 34555555 5667899999999999999999998 678999999 5677665431 589999999988 44344
Q ss_pred -CEEEe
Q 046424 261 -QAIFM 265 (266)
Q Consensus 261 -D~~~l 265 (266)
|+++.
T Consensus 104 fD~V~~ 109 (256)
T 1nkv_A 104 CDVAAC 109 (256)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 98874
No 40
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=98.20 E-value=3.6e-06 Score=72.63 Aligned_cols=55 Identities=27% Similarity=0.426 Sum_probs=48.7
Q ss_pred CCceEEEecCCc---cHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEEeccCCC
Q 046424 201 GLNQLVDVAGGL---GANLKSIVSKYPQLRGINFDL-PHVLKHAPS----CPGVEHVGGDMFV 255 (266)
Q Consensus 201 ~~~~vvDVGGG~---G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gD~f~ 255 (266)
+..+|||||||. |.++..+.+.+|+.+++.+|+ |.+++.++. .++++++.+|+++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~ 139 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRD 139 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCC
Confidence 568999999999 999888889999999999999 788887664 3789999999986
No 41
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=98.20 E-value=2.6e-06 Score=73.70 Aligned_cols=74 Identities=12% Similarity=0.176 Sum_probs=58.0
Q ss_pred HHHHHHc----cCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCC-C
Q 046424 190 KEILEIY----KGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFV-E 256 (266)
Q Consensus 190 ~~i~~~~----~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~ 256 (266)
..+++.+ . .....+|||||||.|.++..+++++ +.+++++|+ |..++.++. .++|+++.+|+.+ +
T Consensus 68 ~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 68 EWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp HHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 3455555 4 6677899999999999999999987 468999999 456665543 1689999999998 7
Q ss_pred CCCC--CEEEe
Q 046424 257 VPKG--QAIFM 265 (266)
Q Consensus 257 ~P~~--D~~~l 265 (266)
+|.+ |+++.
T Consensus 146 ~~~~~fD~v~~ 156 (297)
T 2o57_A 146 CEDNSYDFIWS 156 (297)
T ss_dssp SCTTCEEEEEE
T ss_pred CCCCCEeEEEe
Confidence 7654 98875
No 42
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=98.19 E-value=2.1e-06 Score=72.48 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=58.8
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCceEEeccCCCCCCCC--CEEEe
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-CPGVEHVGGDMFVEVPKG--QAIFM 265 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gD~f~~~P~~--D~~~l 265 (266)
.+++.++ .....+|+|||||+|.++..+++++|..+++++|+ |..++.++. .++++++.+|+.+..|.+ |+++.
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYA 101 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEE
Confidence 4455554 55668999999999999999999999999999999 557776654 378999999998722443 98875
No 43
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=98.18 E-value=2.5e-06 Score=71.95 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=57.3
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCCceEEeccCCC-CCCCC--CEE
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS---CPGVEHVGGDMFV-EVPKG--QAI 263 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~---~~ri~~~~gD~f~-~~P~~--D~~ 263 (266)
.+.+.++ .....+|||||||+|.++..+++..+. +++++|+ |..++.++. ..+++++.+|+.+ ++|.+ |++
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence 3444444 335689999999999999999999776 8999999 567776654 3689999999987 66654 998
Q ss_pred Ee
Q 046424 264 FM 265 (266)
Q Consensus 264 ~l 265 (266)
+.
T Consensus 113 ~~ 114 (253)
T 3g5l_A 113 LS 114 (253)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 44
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=98.18 E-value=2.2e-06 Score=73.30 Aligned_cols=67 Identities=18% Similarity=0.378 Sum_probs=56.2
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC-CCCCC--CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV-EVPKG--QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~P~~--D~~~l 265 (266)
+....+|||||||+|.++..+++.+|+.+++++|+ |..++.++. .++++++.+|+.+ ++|.+ |+++.
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 111 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFV 111 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEE
Confidence 45678999999999999999999999999999999 567766653 2579999999998 66554 98875
No 45
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=98.18 E-value=1.7e-06 Score=71.35 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=53.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----------CCceEEeccCCC-CCCC-C-CEEE
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----------PGVEHVGGDMFV-EVPK-G-QAIF 264 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----------~ri~~~~gD~f~-~~P~-~-D~~~ 264 (266)
....+|||||||+|.++..++++.|..+++++|+ |..++.++.. ++|+++.+|+.. +.+. . |+++
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 3568999999999999999999999999999999 5577766542 289999999965 4433 3 9987
Q ss_pred e
Q 046424 265 M 265 (266)
Q Consensus 265 l 265 (266)
.
T Consensus 108 ~ 108 (219)
T 3jwg_A 108 V 108 (219)
T ss_dssp E
T ss_pred E
Confidence 4
No 46
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.17 E-value=1.6e-06 Score=72.95 Aligned_cols=66 Identities=9% Similarity=-0.072 Sum_probs=54.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCceEEeccCCCCCCC--C-CEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFVEVPK--G-QAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~~~P~--~-D~~~l 265 (266)
....+|+|||||+|..++.+++..|..+++..|+. ..++.|+.+ +||++..+|.++.++. . |++++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivi 96 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITI 96 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEE
Confidence 35689999999999999999999999999999995 466665542 6899999999996554 3 88764
No 47
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=98.17 E-value=2.2e-06 Score=70.65 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=52.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----------CCceEEeccCCC-CCCC-C-CEEE
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----------PGVEHVGGDMFV-EVPK-G-QAIF 264 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----------~ri~~~~gD~f~-~~P~-~-D~~~ 264 (266)
....+|||||||+|.++..+++++|..+++++|+ |..++.++.. ++++++.+|+.. +.+. . |+++
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 3568999999999999999999999999999999 5566665431 289999999865 4442 3 9987
Q ss_pred e
Q 046424 265 M 265 (266)
Q Consensus 265 l 265 (266)
.
T Consensus 108 ~ 108 (217)
T 3jwh_A 108 V 108 (217)
T ss_dssp E
T ss_pred e
Confidence 4
No 48
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=98.16 E-value=5.2e-06 Score=70.49 Aligned_cols=64 Identities=23% Similarity=0.305 Sum_probs=53.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCceEEeccCCC-CCCCC-CEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-CPGVEHVGGDMFV-EVPKG-QAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gD~f~-~~P~~-D~~~l 265 (266)
.+..+|||||||+|.++..++++.+ +++++|+ |..++.++. .++|+++.+|+.+ +.+.. |+++.
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 116 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTC 116 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEE
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEE
Confidence 3568999999999999999999965 7899999 677877765 3689999999998 55555 99875
No 49
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=98.16 E-value=6.9e-06 Score=70.24 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=54.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCCCCceEEeccCCC-CCCCC--CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSCPGVEHVGGDMFV-EVPKG--QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~~ri~~~~gD~f~-~~P~~--D~~~l 265 (266)
...+|||||||+|.++..+++.+. +++++|+. ..++.++..++|+++.+|+-+ ++|.+ |+++.
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~ 105 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIA 105 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEE
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEE
Confidence 457899999999999999999875 68999985 588888888999999999987 78875 98875
No 50
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=98.15 E-value=5.6e-06 Score=71.84 Aligned_cols=66 Identities=21% Similarity=0.133 Sum_probs=54.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC--------CCCceEEeccCCC-CCCC------C--
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPS--------CPGVEHVGGDMFV-EVPK------G-- 260 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~--------~~ri~~~~gD~f~-~~P~------~-- 260 (266)
....+|||||||+|.++..+++++ |..+++++|+ |..++.++. .++|+++.+|+.+ +++. +
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999997 9999999999 557776643 3689999999988 5554 3
Q ss_pred CEEEe
Q 046424 261 QAIFM 265 (266)
Q Consensus 261 D~~~l 265 (266)
|+++.
T Consensus 115 D~V~~ 119 (299)
T 3g5t_A 115 DMITA 119 (299)
T ss_dssp EEEEE
T ss_pred eEEeH
Confidence 88874
No 51
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=98.15 E-value=1.6e-06 Score=73.19 Aligned_cols=74 Identities=11% Similarity=0.149 Sum_probs=60.0
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCC-CCCC
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVE-VPKG 260 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~-~P~~ 260 (266)
.++..++ +....+|||+|||+|.++..+++. .|..+++++|+ |..++.++. .++|+++.+|+.+. +|.+
T Consensus 87 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 165 (258)
T 2pwy_A 87 AMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEA 165 (258)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTT
T ss_pred HHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC
Confidence 4566665 667789999999999999999999 78999999998 667666543 26899999999984 7753
Q ss_pred --CEEEe
Q 046424 261 --QAIFM 265 (266)
Q Consensus 261 --D~~~l 265 (266)
|++++
T Consensus 166 ~~D~v~~ 172 (258)
T 2pwy_A 166 AYDGVAL 172 (258)
T ss_dssp CEEEEEE
T ss_pred CcCEEEE
Confidence 98875
No 52
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=98.15 E-value=3.6e-06 Score=75.94 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=59.6
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC---------CCceEEeccCCCCCCCC
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC---------PGVEHVGGDMFVEVPKG 260 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~---------~ri~~~~gD~f~~~P~~ 260 (266)
.+++.++ .....+|+|||||+|.++..+++++|..+++++|. |..++.++.+ .+++++.+|+++++|.+
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 4566665 33448999999999999999999999999999999 5577766542 25888999999988764
Q ss_pred --CEEEe
Q 046424 261 --QAIFM 265 (266)
Q Consensus 261 --D~~~l 265 (266)
|+|++
T Consensus 292 ~fD~Ii~ 298 (375)
T 4dcm_A 292 RFNAVLC 298 (375)
T ss_dssp CEEEEEE
T ss_pred CeeEEEE
Confidence 99885
No 53
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=98.14 E-value=3.5e-06 Score=72.43 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=57.7
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCC-C-C
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPK-G-Q 261 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~-~-D 261 (266)
.+++.++ ....+|+|||||+|..+..+++.+|+.+++++|+ |..++.++.+ ++++++.+|+++++|. . |
T Consensus 101 ~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD 178 (276)
T 2b3t_A 101 QALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFA 178 (276)
T ss_dssp HHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEE
T ss_pred HHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCcc
Confidence 3444443 3457999999999999999999999999999999 5567666542 5799999999987644 3 9
Q ss_pred EEEe
Q 046424 262 AIFM 265 (266)
Q Consensus 262 ~~~l 265 (266)
+++.
T Consensus 179 ~Iv~ 182 (276)
T 2b3t_A 179 MIVS 182 (276)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 54
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=98.14 E-value=2.1e-06 Score=68.18 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=56.0
Q ss_pred HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------C-CCceEEeccCCCCCCC---C
Q 046424 192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------C-PGVEHVGGDMFVEVPK---G 260 (266)
Q Consensus 192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~-~ri~~~~gD~f~~~P~---~ 260 (266)
+++.++ .....+|+|||||+|.++..+++.+|..+++++|+. ..++.++. . +++ ++.+|..+.+|. .
T Consensus 17 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~ 94 (178)
T 3hm2_A 17 AISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDN 94 (178)
T ss_dssp HHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSC
T ss_pred HHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCC
Confidence 344444 556689999999999999999999999999999994 46666553 1 378 888998875553 3
Q ss_pred -CEEEe
Q 046424 261 -QAIFM 265 (266)
Q Consensus 261 -D~~~l 265 (266)
|++++
T Consensus 95 ~D~i~~ 100 (178)
T 3hm2_A 95 PDVIFI 100 (178)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 99875
No 55
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=98.14 E-value=1.9e-06 Score=71.38 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=52.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCC-C--CCCC--CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV-E--VPKG--QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~-~--~P~~--D~~~l 265 (266)
...+|||||||+|.++..+++.+|+.+++++|+. ..++.++. .++|+++.+|..+ + +|.+ |.+++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~ 114 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYL 114 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence 4578999999999999999999999999999994 46665543 2679999999876 3 5553 77653
No 56
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=98.13 E-value=4.9e-06 Score=69.40 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=55.9
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC---CCceEEeccCCC-CCCCC--CE
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC---PGVEHVGGDMFV-EVPKG--QA 262 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~---~ri~~~~gD~f~-~~P~~--D~ 262 (266)
+.+...++ .....+|+|||||+|.++..++++.+ .+++++|+ |..++.++.. .+++++.+|+.+ ++|.+ |+
T Consensus 33 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 33 PALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceE
Confidence 34555555 44568999999999999999998843 38999999 4577666542 479999999988 56543 98
Q ss_pred EEe
Q 046424 263 IFM 265 (266)
Q Consensus 263 ~~l 265 (266)
++.
T Consensus 111 v~~ 113 (243)
T 3bkw_A 111 AYS 113 (243)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 57
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=98.12 E-value=6.6e-07 Score=73.11 Aligned_cols=75 Identities=23% Similarity=0.215 Sum_probs=49.4
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCCCCC------
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFVEVP------ 258 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~~~P------ 258 (266)
.+++.+.......+|+|||||+|.++..+++.+|+.+++++|+ |..++.++.+ .+++++.+|++++++
T Consensus 20 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 99 (215)
T 4dzr_A 20 EAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERG 99 (215)
T ss_dssp HHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhcc
Confidence 3444443125678999999999999999999999999999999 5678777653 168999999988655
Q ss_pred CC-CEEEe
Q 046424 259 KG-QAIFM 265 (266)
Q Consensus 259 ~~-D~~~l 265 (266)
.. |+++.
T Consensus 100 ~~fD~i~~ 107 (215)
T 4dzr_A 100 RPWHAIVS 107 (215)
T ss_dssp CCBSEEEE
T ss_pred CcccEEEE
Confidence 33 88875
No 58
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.11 E-value=2.2e-06 Score=72.70 Aligned_cols=66 Identities=11% Similarity=0.041 Sum_probs=54.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCceEEeccCCCCCCC---CCEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFVEVPK---GQAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~~~P~---~D~~~l 265 (266)
....+|+|||||+|.+++.+++..|..+++.+|+. ..++.|+.+ +||++..+|.++.++. .|++++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivi 96 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVI 96 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEE
Confidence 35589999999999999999999999999999995 466665542 6899999999996553 388764
No 59
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.10 E-value=4.4e-06 Score=66.96 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=55.9
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-CCceEEeccCCC-CCCC-C-CEEEe
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-PGVEHVGGDMFV-EVPK-G-QAIFM 265 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~ri~~~~gD~f~-~~P~-~-D~~~l 265 (266)
.++..+ .....+|+|||||.|.++..+++. ..+++++|. |..++.++.. ++++++.+|+.+ ++|. . |+++.
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 455554 346689999999999999999998 568999999 5577766543 679999999998 6664 3 99875
No 60
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=98.10 E-value=3.3e-06 Score=68.96 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=52.7
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCCCCCC-C-CEEEe
Q 046424 202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFVEVPK-G-QAIFM 265 (266)
Q Consensus 202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~P~-~-D~~~l 265 (266)
..+|+|||||+|.++..+++.+|+.+++++|. |..++.++. .++|+++.+|+.+..|. . |+++.
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~ 138 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVIS 138 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEEC
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEE
Confidence 57999999999999999999999999999998 556666543 14599999999985443 3 98874
No 61
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=98.10 E-value=4.1e-06 Score=76.14 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=57.9
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC---------------CCCceEEeccC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS---------------CPGVEHVGGDM 253 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~---------------~~ri~~~~gD~ 253 (266)
..+++.+. .....+|+|||||+|..+..++..++.-+++++|+.+ .++.|+. .++|+++.||+
T Consensus 163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 34556555 6677899999999999999999998877799999963 4444331 26899999999
Q ss_pred CC-CCC----CCCEEEe
Q 046424 254 FV-EVP----KGQAIFM 265 (266)
Q Consensus 254 f~-~~P----~~D~~~l 265 (266)
++ +++ ..|++++
T Consensus 242 ~~lp~~d~~~~aDVVf~ 258 (438)
T 3uwp_A 242 LSEEWRERIANTSVIFV 258 (438)
T ss_dssp TSHHHHHHHHTCSEEEE
T ss_pred cCCccccccCCccEEEE
Confidence 98 553 3598875
No 62
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=98.09 E-value=1.1e-05 Score=65.46 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=49.5
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCC--CCeEEEeechHHHhhCCCCCCceEEeccCCCC
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYP--QLRGINFDLPHVLKHAPSCPGVEHVGGDMFVE 256 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P--~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~~ 256 (266)
.+.+.+..+....+|+|||||+|.++..+++++| +.+++++|+.+. ...++++++.+|+.+.
T Consensus 12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~ 75 (201)
T 2plw_A 12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKD 75 (201)
T ss_dssp HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTT
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccch
Confidence 4455554235668999999999999999999998 789999999763 1236899999999873
No 63
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=98.09 E-value=6.4e-06 Score=69.41 Aligned_cols=66 Identities=14% Similarity=0.302 Sum_probs=51.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCC------------CCCCceEEeccCCCC----CCCC--
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAP------------SCPGVEHVGGDMFVE----VPKG-- 260 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~------------~~~ri~~~~gD~f~~----~P~~-- 260 (266)
.+..+|||||||+|.++..+++.+|+.+++++|+. .+++.++ ..++|+++.+|+.+. +|.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 35679999999999999999999999999999994 4555332 236899999999863 4554
Q ss_pred CEEEe
Q 046424 261 QAIFM 265 (266)
Q Consensus 261 D~~~l 265 (266)
|.+++
T Consensus 125 D~v~~ 129 (235)
T 3ckk_A 125 TKMFF 129 (235)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77754
No 64
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=98.07 E-value=6.1e-06 Score=69.21 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=57.7
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC-CCCCC-
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV-EVPKG- 260 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~P~~- 260 (266)
..+++.++ .....+|||||||+|.++..+++..+ +++++|+ |..++.++. .++++++.+|+.+ +++.+
T Consensus 11 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 11 GLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred chHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 34566666 66789999999999999999999986 7899998 556666553 2679999999977 66643
Q ss_pred -CEEEe
Q 046424 261 -QAIFM 265 (266)
Q Consensus 261 -D~~~l 265 (266)
|+++.
T Consensus 88 fD~v~~ 93 (239)
T 1xxl_A 88 FDIITC 93 (239)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 98874
No 65
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=98.06 E-value=3.2e-06 Score=67.15 Aligned_cols=72 Identities=14% Similarity=0.095 Sum_probs=56.4
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCC-C-C
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPK-G-Q 261 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~-~-D 261 (266)
.+++.++ .....+|+|||||+|.++..+++ +..+++++|. |..++.++.+ ++++++.+|+.+++|. . |
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 3444444 55668999999999999999998 8889999998 4566665542 6899999999886664 3 9
Q ss_pred EEEe
Q 046424 262 AIFM 265 (266)
Q Consensus 262 ~~~l 265 (266)
++++
T Consensus 103 ~i~~ 106 (183)
T 2yxd_A 103 KAFI 106 (183)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 66
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=98.05 E-value=7.5e-06 Score=76.22 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=58.9
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCceEEeccCCC-CCCCC-
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC-------PGVEHVGGDMFV-EVPKG- 260 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri~~~~gD~f~-~~P~~- 260 (266)
..+++.++ .....+|+|||||+|.++..+++ .|..+++++|+.++++.++.. ++|+++.+|+++ ++|..
T Consensus 148 ~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~f 225 (480)
T 3b3j_A 148 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 225 (480)
T ss_dssp HHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCCe
Confidence 45566555 44568999999999999998877 688899999998866655431 689999999998 77766
Q ss_pred CEEEe
Q 046424 261 QAIFM 265 (266)
Q Consensus 261 D~~~l 265 (266)
|+|+.
T Consensus 226 D~Ivs 230 (480)
T 3b3j_A 226 DIIIS 230 (480)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99874
No 67
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=98.04 E-value=2.3e-06 Score=71.75 Aligned_cols=66 Identities=12% Similarity=0.249 Sum_probs=54.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCC----CC-CEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVP----KG-QAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P----~~-D~~~l 265 (266)
.+..+|||||||+|..+..+++.+|+.+++.+|+ |..++.++.+ ++|+++.+|+.+..| .. |++++
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 3568999999999999999999999999999999 5677766542 589999999988544 33 98875
No 68
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=98.04 E-value=5.2e-06 Score=72.00 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=56.2
Q ss_pred HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC---------CCceEEeccCCC-CC
Q 046424 189 MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC---------PGVEHVGGDMFV-EV 257 (266)
Q Consensus 189 ~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~---------~ri~~~~gD~f~-~~ 257 (266)
...+++.++ . ...+|||||||+|.++..++++ ..+++++|+ |..++.++.. .+|+++.+|+.+ +.
T Consensus 72 ~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 72 AREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 445566654 3 3359999999999999999998 568999999 5677766542 579999999998 56
Q ss_pred CCC-CEEEe
Q 046424 258 PKG-QAIFM 265 (266)
Q Consensus 258 P~~-D~~~l 265 (266)
+.. |++++
T Consensus 148 ~~~fD~v~~ 156 (299)
T 3g2m_A 148 DKRFGTVVI 156 (299)
T ss_dssp SCCEEEEEE
T ss_pred CCCcCEEEE
Confidence 555 97764
No 69
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=98.04 E-value=2.3e-06 Score=71.37 Aligned_cols=65 Identities=11% Similarity=0.205 Sum_probs=51.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCCC----CCCC--CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFVE----VPKG--QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~~----~P~~--D~~~l 265 (266)
...+|||||||+|.++..+++.+|+.+++++|+. ..++.++. .++|+++.+|..+- +|.+ |.+++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQL 111 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEE
Confidence 4689999999999999999999999999999994 45655432 25799999997652 5554 76654
No 70
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=98.03 E-value=6e-06 Score=70.92 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=60.1
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCC-C
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPK-G 260 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~-~ 260 (266)
.++..++ .....+|||+|||+|.++..++++ .|..+++.+|+ |..++.++.+ ++++++.+|+.+.+|. .
T Consensus 103 ~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 181 (277)
T 1o54_A 103 FIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKD 181 (277)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCS
T ss_pred HHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCc
Confidence 4556555 666789999999999999999999 78999999998 6677666542 5799999999987665 3
Q ss_pred -CEEEe
Q 046424 261 -QAIFM 265 (266)
Q Consensus 261 -D~~~l 265 (266)
|++++
T Consensus 182 ~D~V~~ 187 (277)
T 1o54_A 182 VDALFL 187 (277)
T ss_dssp EEEEEE
T ss_pred cCEEEE
Confidence 99875
No 71
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=98.03 E-value=2.7e-06 Score=71.56 Aligned_cols=74 Identities=18% Similarity=0.277 Sum_probs=57.1
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEEeccCCC-CCCCC--C
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----CPGVEHVGGDMFV-EVPKG--Q 261 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gD~f~-~~P~~--D 261 (266)
..+++.++ .....+|||||||+|.++..++++. ..+++++|. |..++.++. .++++++.+|+.+ ++|.+ |
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 34555554 4567899999999999999999987 557999998 567766553 2679999999987 66654 9
Q ss_pred EEEe
Q 046424 262 AIFM 265 (266)
Q Consensus 262 ~~~l 265 (266)
+++.
T Consensus 161 ~v~~ 164 (254)
T 1xtp_A 161 LIVI 164 (254)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 72
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=98.03 E-value=1.3e-05 Score=66.65 Aligned_cols=63 Identities=25% Similarity=0.401 Sum_probs=52.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-CCceEEeccCCC-CCCCC-CEEE
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-PGVEHVGGDMFV-EVPKG-QAIF 264 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~ri~~~~gD~f~-~~P~~-D~~~ 264 (266)
....+|+|||||+|.++..++++++ +++++|+ |..++.++.. ++++++.+|+.+ +.+.. |+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~ 105 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVV 105 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEE
Confidence 3568999999999999999999987 7999999 6677776653 689999999998 55555 9887
No 73
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=98.03 E-value=4.8e-06 Score=68.32 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=53.3
Q ss_pred HHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------------------CCCceEEeccC
Q 046424 193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------------------CPGVEHVGGDM 253 (266)
Q Consensus 193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------------------~~ri~~~~gD~ 253 (266)
++.+. .....+|+|||||+|..+..++++ ..+++++|+. ..++.++. .++|+++.+|+
T Consensus 15 ~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~ 91 (203)
T 1pjz_A 15 WSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF 91 (203)
T ss_dssp HHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred HHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc
Confidence 34443 456689999999999999999998 5689999995 46665542 25899999999
Q ss_pred CC-CCC--CC-CEEEe
Q 046424 254 FV-EVP--KG-QAIFM 265 (266)
Q Consensus 254 f~-~~P--~~-D~~~l 265 (266)
++ +.+ .. |+++.
T Consensus 92 ~~l~~~~~~~fD~v~~ 107 (203)
T 1pjz_A 92 FALTARDIGHCAAFYD 107 (203)
T ss_dssp SSSTHHHHHSEEEEEE
T ss_pred ccCCcccCCCEEEEEE
Confidence 98 544 24 88873
No 74
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=98.03 E-value=1.2e-05 Score=64.11 Aligned_cols=59 Identities=14% Similarity=0.262 Sum_probs=49.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCCCCCceEEeccCCCCCCCC--CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPSCPGVEHVGGDMFVEVPKG--QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~~~ri~~~~gD~f~~~P~~--D~~~l 265 (266)
...+|+|||||+|.++..++++. +++++|+.+ .++. .++++++.+|++++++.+ |+++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~ 84 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVF 84 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEE
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEE
Confidence 44699999999999999999988 899999954 5655 468999999999977643 99875
No 75
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=98.02 E-value=7.5e-06 Score=71.12 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=57.1
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCCC-C
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPKG-Q 261 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~~-D 261 (266)
.+++.++ .....+|||||||+|.++..+++++| .+++++|+ |..++.++.. ++|+++.+|+.+- +.. |
T Consensus 63 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~fD 139 (302)
T 3hem_A 63 LALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPVD 139 (302)
T ss_dssp HHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCCS
T ss_pred HHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCcc
Confidence 4556555 56678999999999999999999988 89999999 5677666532 4899999999754 554 8
Q ss_pred EEEe
Q 046424 262 AIFM 265 (266)
Q Consensus 262 ~~~l 265 (266)
+++.
T Consensus 140 ~v~~ 143 (302)
T 3hem_A 140 RIVS 143 (302)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 76
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=98.02 E-value=4.7e-06 Score=72.27 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=52.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCC-CC---CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVP-KG---QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P-~~---D~~~l 265 (266)
...+|+|||||+|..+..+++. |+.+++++|+ |..++.++.+ .||+++.+|++++.+ .- |+++.
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~Ivs 198 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILS 198 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEE
Confidence 4468999999999999999999 9999999999 6677776542 479999999998554 34 88764
No 77
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.02 E-value=8.8e-06 Score=69.79 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=57.2
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-CCceEEeccCCC-CCCCC-CEEEe
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-PGVEHVGGDMFV-EVPKG-QAIFM 265 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~ri~~~~gD~f~-~~P~~-D~~~l 265 (266)
.+++.++ .....+|||||||+|.++..+++ |..+++++|+ |..++.++.. ++++++.+|+.+ +++.. |+++.
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 123 (279)
T 3ccf_A 48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFS 123 (279)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEE
Confidence 4455555 55678999999999999999998 8889999999 5567766543 789999999988 55545 98875
No 78
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=98.02 E-value=6.7e-06 Score=67.65 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=55.6
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC--CCceEEeccCCC-CCCCC-CEEEe
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC--PGVEHVGGDMFV-EVPKG-QAIFM 265 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~--~ri~~~~gD~f~-~~P~~-D~~~l 265 (266)
.+++.+. .....+|||||||+|.++..++++ ..+++++|+ |..++.++.. ++++++.+|+.+ +.+.. |+++.
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 3444443 345689999999999999999998 668999999 5567666542 489999999998 66644 99875
No 79
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=98.02 E-value=1.7e-06 Score=75.48 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=55.3
Q ss_pred CCCCceEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCCCC-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIV-SKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVPKG-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~-~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~~-D~~~l 265 (266)
.....+|+|||||+|.++..++ ..+|+.+++++|+ |..++.++.+ ++|+++.+|+.+ +++.. |+++.
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~ 193 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTS 193 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEEC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEE
Confidence 4567899999999999999996 7899999999999 6677766531 469999999998 56654 99875
No 80
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=98.00 E-value=1.5e-05 Score=67.18 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=51.7
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCceEEeccCCC-CCCCC--CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-----CPGVEHVGGDMFV-EVPKG--QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-----~~ri~~~~gD~f~-~~P~~--D~~~l 265 (266)
.....+|+|||||+|.++..+++. ..+++++|+ |..++.++. .++++++.+|+.+ ++|.+ |+++.
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 110 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIV 110 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEE
Confidence 456789999999999999999987 568999999 446665432 3789999999977 56654 98875
No 81
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=97.99 E-value=3.6e-06 Score=74.13 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=53.2
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC---CCCC-C-CEEEe
Q 046424 203 NQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV---EVPK-G-QAIFM 265 (266)
Q Consensus 203 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~---~~P~-~-D~~~l 265 (266)
.+|||||||.|..+..+++.+|+.+++++|+ |.+++.+++ .+|++++.+|.++ ..+. . |+|+.
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 165 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIR 165 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEE
Confidence 4999999999999999999999999999999 568887654 2699999999876 3443 4 98875
No 82
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=97.99 E-value=6.1e-06 Score=69.81 Aligned_cols=65 Identities=8% Similarity=-0.038 Sum_probs=52.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccC----CCCCC----CC-CEE
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDM----FVEVP----KG-QAI 263 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~----f~~~P----~~-D~~ 263 (266)
...+|+|||||+|.++..+++++|+.+++++|+ |..++.++.+ ++|+++.+|. +++++ .. |++
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 457999999999999999999999999999999 5677766532 4799999984 44555 23 888
Q ss_pred Ee
Q 046424 264 FM 265 (266)
Q Consensus 264 ~l 265 (266)
+.
T Consensus 145 ~~ 146 (254)
T 2h00_A 145 MC 146 (254)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 83
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=97.98 E-value=1.4e-05 Score=63.92 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=56.8
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------C--CceEEeccCCCCCCC-
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------P--GVEHVGGDMFVEVPK- 259 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~--ri~~~~gD~f~~~P~- 259 (266)
+.+++.+. .....+|+|||||+|.++..+++. ..+++++|+ |..++.++.+ + |++++.+|+.+..+.
T Consensus 42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 34556555 556789999999999999999998 778999998 5566665431 3 599999999996665
Q ss_pred C-CEEEe
Q 046424 260 G-QAIFM 265 (266)
Q Consensus 260 ~-D~~~l 265 (266)
. |+++.
T Consensus 119 ~~D~v~~ 125 (194)
T 1dus_A 119 KYNKIIT 125 (194)
T ss_dssp CEEEEEE
T ss_pred CceEEEE
Confidence 3 98875
No 84
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=97.98 E-value=1.3e-05 Score=71.29 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=56.3
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCceEEeccCCC-CCCC-C-
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC-------PGVEHVGGDMFV-EVPK-G- 260 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri~~~~gD~f~-~~P~-~- 260 (266)
.+.+... .....+|+|||||+|.++..++++ +..+++++|..+.++.++.. ++|+++.+|+.+ ++|. .
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 3444333 445689999999999999999887 55689999998777665531 689999999998 6774 4
Q ss_pred CEEEe
Q 046424 261 QAIFM 265 (266)
Q Consensus 261 D~~~l 265 (266)
|+++.
T Consensus 133 D~Ivs 137 (340)
T 2fyt_A 133 DVIIS 137 (340)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99874
No 85
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=97.98 E-value=1.2e-05 Score=67.28 Aligned_cols=63 Identities=19% Similarity=0.415 Sum_probs=51.0
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEEeccCCC---CCCCC--CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSCPGVEHVGGDMFV---EVPKG--QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gD~f~---~~P~~--D~~~l 265 (266)
++...+|||||||+|.++..+++. +.+++++|+ |..++.++. +++++.+|+.+ ++|.+ |+++.
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~--~~~~~~~d~~~~~~~~~~~~fD~i~~ 107 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEG--KFNVVKSDAIEYLKSLPDKYLDGVMI 107 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHT--TSEEECSCHHHHHHTSCTTCBSEEEE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHh--hcceeeccHHHHhhhcCCCCeeEEEE
Confidence 446689999999999999999998 457899999 567777765 39999999877 56654 99875
No 86
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=97.98 E-value=9.3e-06 Score=73.26 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=54.3
Q ss_pred CCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC--------------CCceEEeccCCC-------CC
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPSC--------------PGVEHVGGDMFV-------EV 257 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~--------------~ri~~~~gD~f~-------~~ 257 (266)
...+|||||||+|.++..+++.+ |+.+++++|+ |..++.++.+ ++|+++.+|+.+ ++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 45799999999999999999997 8999999999 5677766542 689999999987 56
Q ss_pred CCC--CEEEe
Q 046424 258 PKG--QAIFM 265 (266)
Q Consensus 258 P~~--D~~~l 265 (266)
|.+ |+|+.
T Consensus 163 ~~~~fD~V~~ 172 (383)
T 4fsd_A 163 PDSSVDIVIS 172 (383)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 654 98874
No 87
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=97.97 E-value=1.2e-05 Score=64.72 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=55.7
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCC-CCCCC-C
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFV-EVPKG-Q 261 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~-~~P~~-D 261 (266)
.+++.++ .....+|+|||||+|.++..+++. ..+++++|+ |..++.++.. ++++++.+|+.+ +.+.. |
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 4555555 445679999999999999999988 668999999 5677766542 479999999987 45444 9
Q ss_pred EEEe
Q 046424 262 AIFM 265 (266)
Q Consensus 262 ~~~l 265 (266)
+++.
T Consensus 100 ~v~~ 103 (199)
T 2xvm_A 100 FILS 103 (199)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 88
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=97.97 E-value=1.5e-05 Score=65.51 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=55.0
Q ss_pred HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------C-CceEEeccCCCCCC---CC
Q 046424 192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------P-GVEHVGGDMFVEVP---KG 260 (266)
Q Consensus 192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~-ri~~~~gD~f~~~P---~~ 260 (266)
++..++ .....+|+|||||+|.++..+++. ..+++++|+ |..++.++.+ + +|+++.+|+.+.++ ..
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 344444 556689999999999999999998 789999999 5677666532 4 89999999988332 33
Q ss_pred CEEEe
Q 046424 261 QAIFM 265 (266)
Q Consensus 261 D~~~l 265 (266)
|++++
T Consensus 124 D~v~~ 128 (204)
T 3njr_A 124 EAVFI 128 (204)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 98875
No 89
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=97.97 E-value=6.8e-06 Score=69.60 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=53.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC---CCCC--C-CEEE
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV---EVPK--G-QAIF 264 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~---~~P~--~-D~~~ 264 (266)
.+..+|||||||+|..+..+++.+| +.+++.+|+ |..++.++.+ ++|+++.+|..+ .++. . |+++
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 3568999999999999999999999 899999999 6677666542 589999999876 2332 4 9987
Q ss_pred e
Q 046424 265 M 265 (266)
Q Consensus 265 l 265 (266)
+
T Consensus 142 ~ 142 (248)
T 3tfw_A 142 I 142 (248)
T ss_dssp E
T ss_pred E
Confidence 5
No 90
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=97.97 E-value=2.6e-05 Score=64.96 Aligned_cols=64 Identities=16% Similarity=0.314 Sum_probs=52.8
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC---CCceEEeccCCC-CCCCC--CEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC---PGVEHVGGDMFV-EVPKG--QAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~---~ri~~~~gD~f~-~~P~~--D~~~l 265 (266)
....+|||||||+|.++..+++. ..+++++|+ |..++.++.. .+++++.+|+.+ ++|.+ |+++.
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 122 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMA 122 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEE
Confidence 35689999999999999999998 568999999 5577766553 789999999998 66654 98875
No 91
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=97.96 E-value=8.7e-06 Score=67.87 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=50.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCC-CCCCC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFV-EVPKG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~-~~P~~-D~~~l 265 (266)
...+|||||||+|.++..+++. .+++++|+ |..++.++.. .+++++.+|+.+ +.+.. |++++
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 102 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITI 102 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEE
Confidence 4589999999999999999887 78999999 5677766542 579999999988 56655 98875
No 92
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=97.96 E-value=1.7e-05 Score=66.90 Aligned_cols=57 Identities=11% Similarity=0.240 Sum_probs=47.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCC--------------CCCCceEEeccCCCC
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAP--------------SCPGVEHVGGDMFVE 256 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~--------------~~~ri~~~~gD~f~~ 256 (266)
+...+|||||||+|.++..+++.+|+.+++++|+. .+++.++ ..++|+++.+|.++.
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~ 119 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF 119 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH
Confidence 35689999999999999999999999999999974 4655442 225799999999873
No 93
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=97.96 E-value=8.4e-06 Score=69.50 Aligned_cols=74 Identities=9% Similarity=0.119 Sum_probs=56.5
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechH-------HHhhCCCC-------CCceEEecc-CC
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLPH-------VLKHAPSC-------PGVEHVGGD-MF 254 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-------vi~~a~~~-------~ri~~~~gD-~f 254 (266)
.+++.++ .....+|+|||||+|.++..+++++ |+.+++++|+.+ .++.++.+ ++|+++.+| ++
T Consensus 34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 112 (275)
T 3bkx_A 34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS 112 (275)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 4556555 6667899999999999999999996 889999999964 56555431 589999998 65
Q ss_pred C---CCCC-C-CEEEe
Q 046424 255 V---EVPK-G-QAIFM 265 (266)
Q Consensus 255 ~---~~P~-~-D~~~l 265 (266)
. ++|. . |+++.
T Consensus 113 ~~~~~~~~~~fD~v~~ 128 (275)
T 3bkx_A 113 DDLGPIADQHFDRVVL 128 (275)
T ss_dssp TCCGGGTTCCCSEEEE
T ss_pred hccCCCCCCCEEEEEE
Confidence 4 2344 3 98875
No 94
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=97.96 E-value=1.5e-05 Score=65.03 Aligned_cols=65 Identities=12% Similarity=0.060 Sum_probs=52.0
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCCC-CEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPKG-QAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~~-D~~~l 265 (266)
....+|||||||+|.++..+++ +|..+++++|+ |..++.++.+ +.++++.+|+++..+.. |+++.
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~ 131 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVA 131 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEE
Confidence 3568999999999999999776 67789999999 5677766542 34999999999866655 98875
No 95
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=97.95 E-value=8.6e-06 Score=71.06 Aligned_cols=66 Identities=17% Similarity=0.139 Sum_probs=53.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----------CCCceEEeccCCCCC--CC-C-CEE
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-----------CPGVEHVGGDMFVEV--PK-G-QAI 263 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gD~f~~~--P~-~-D~~ 263 (266)
.+..+|||||||+|..+..+++..|..+++++|+ |.+++.++. .+|++++.+|.++.+ +. . |+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 3578999999999999999999888889999999 557776543 369999999998843 33 3 998
Q ss_pred Ee
Q 046424 264 FM 265 (266)
Q Consensus 264 ~l 265 (266)
+.
T Consensus 162 i~ 163 (294)
T 3adn_A 162 IS 163 (294)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 96
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=97.95 E-value=9.5e-06 Score=72.09 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=58.3
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-----CCceEEeccCCCCCCCC-CE
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-----PGVEHVGGDMFVEVPKG-QA 262 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-----~ri~~~~gD~f~~~P~~-D~ 262 (266)
+.+++.++ .....+|+|||||+|.++..+++.+|+.+++++|+. ..++.++.+ ..++++.+|+++..+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 44566664 334568999999999999999999999999999995 467666542 34788999999855555 99
Q ss_pred EEe
Q 046424 263 IFM 265 (266)
Q Consensus 263 ~~l 265 (266)
++.
T Consensus 265 Iv~ 267 (343)
T 2pjd_A 265 IIS 267 (343)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 97
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=97.93 E-value=1.1e-05 Score=71.78 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=56.9
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC------C-CCceEEeccCCC-CCCCC-
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS------C-PGVEHVGGDMFV-EVPKG- 260 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~------~-~ri~~~~gD~f~-~~P~~- 260 (266)
..+++.+. .....+|+|||||+|.++..++++ +..+++++|+.+.++.++. . ++|+++.+|+.+ +.|..
T Consensus 40 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 40 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 34555554 445689999999999999998885 6678999999876655543 1 689999999998 66765
Q ss_pred CEEEe
Q 046424 261 QAIFM 265 (266)
Q Consensus 261 D~~~l 265 (266)
|+++.
T Consensus 118 D~Ivs 122 (348)
T 2y1w_A 118 DIIIS 122 (348)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 98874
No 98
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=97.93 E-value=1.6e-05 Score=66.81 Aligned_cols=72 Identities=21% Similarity=0.317 Sum_probs=54.7
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCC-CCCCC-CE
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFV-EVPKG-QA 262 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~-~~P~~-D~ 262 (266)
.+++... .....+|+|||||+|.++..+++. ..+++++|+ |..++.++.. .+++++.+|+.+ +.+.. |+
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 108 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA 108 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccE
Confidence 3344433 345689999999999999999987 568999999 5677666532 479999999998 55655 98
Q ss_pred EEe
Q 046424 263 IFM 265 (266)
Q Consensus 263 ~~l 265 (266)
+++
T Consensus 109 v~~ 111 (252)
T 1wzn_A 109 VTM 111 (252)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 99
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=97.93 E-value=1.4e-05 Score=68.75 Aligned_cols=72 Identities=18% Similarity=0.165 Sum_probs=54.9
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCCCCCC-C
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVEVPKG-Q 261 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~P~~-D 261 (266)
.+++.++ .....+|||||||.|.++..++++++. +++++|+ |..++.++. .++|+++.+|+. ++|.. |
T Consensus 55 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~fD 131 (287)
T 1kpg_A 55 LALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE-QFDEPVD 131 (287)
T ss_dssp HHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG-GCCCCCS
T ss_pred HHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh-hCCCCee
Confidence 4455554 556789999999999999999987754 9999999 556665543 258999999995 45544 9
Q ss_pred EEEe
Q 046424 262 AIFM 265 (266)
Q Consensus 262 ~~~l 265 (266)
+++.
T Consensus 132 ~v~~ 135 (287)
T 1kpg_A 132 RIVS 135 (287)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 100
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=97.92 E-value=1.5e-05 Score=68.11 Aligned_cols=67 Identities=13% Similarity=0.270 Sum_probs=53.5
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------C---CCceEEeccCCCC--------CCC
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------C---PGVEHVGGDMFVE--------VPK 259 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~---~ri~~~~gD~f~~--------~P~ 259 (266)
.....+|||||||+|.++..+++++|+.+++++|+ |..++.++. + +||+++.+|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 44567999999999999999999999999999999 455555432 2 3799999999875 343
Q ss_pred -C-CEEEe
Q 046424 260 -G-QAIFM 265 (266)
Q Consensus 260 -~-D~~~l 265 (266)
. |+++.
T Consensus 114 ~~fD~Vv~ 121 (260)
T 2ozv_A 114 EHFHHVIM 121 (260)
T ss_dssp TCEEEEEE
T ss_pred CCcCEEEE
Confidence 3 98875
No 101
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=97.91 E-value=1e-05 Score=70.59 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=54.3
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCC-C-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPK-G-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~-~-D~~~l 265 (266)
.....+|+|||||+|.++..++.+.|+.+++++|+ |+.++.|+.+ ++|+++.+|..+ +|. . |++++
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~ 194 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMV 194 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEE
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEE
Confidence 56789999999999988877778889999999999 5678777642 789999999987 333 3 99875
No 102
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=97.91 E-value=3.8e-05 Score=63.98 Aligned_cols=66 Identities=6% Similarity=0.135 Sum_probs=52.0
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhh----CCCCCCceEEeccCCC-----CCCCC-CEEE
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKH----APSCPGVEHVGGDMFV-----EVPKG-QAIF 264 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~----a~~~~ri~~~~gD~f~-----~~P~~-D~~~ 264 (266)
+....+|+|||||+|.++..+++.+|+.+++++|.. ..++. ++..++++++.+|+.+ +++.. |+++
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~ 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE
Confidence 456689999999999999999999998899999995 35543 4444789999999986 23333 8876
No 103
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=97.91 E-value=1.8e-05 Score=64.46 Aligned_cols=65 Identities=11% Similarity=0.082 Sum_probs=52.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEEeccCCC-CCCCC--CEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----CPGVEHVGGDMFV-EVPKG--QAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gD~f~-~~P~~--D~~~l 265 (266)
....+|+|||||+|.++..+++..+. +++++|+ |..++.++. .++++++.+|+.+ +++.+ |+++.
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~ 113 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLE 113 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEE
Confidence 45689999999999999999999776 8999999 456665543 2689999999988 66653 99874
No 104
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=97.90 E-value=1.5e-05 Score=68.26 Aligned_cols=74 Identities=18% Similarity=0.185 Sum_probs=58.1
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC---------CCCceEEeccCCC-CCC
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDL-PHVLKHAPS---------CPGVEHVGGDMFV-EVP 258 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~---------~~ri~~~~gD~f~-~~P 258 (266)
.++..++ .....+|+|||||+|.++..+++. .|..+++.+|+ |..++.++. .++++++.+|+.+ +++
T Consensus 90 ~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~ 168 (280)
T 1i9g_A 90 QIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP 168 (280)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred HHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC
Confidence 4556565 666789999999999999999996 68899999999 666665543 2579999999988 455
Q ss_pred C-C-CEEEe
Q 046424 259 K-G-QAIFM 265 (266)
Q Consensus 259 ~-~-D~~~l 265 (266)
. . |++++
T Consensus 169 ~~~~D~v~~ 177 (280)
T 1i9g_A 169 DGSVDRAVL 177 (280)
T ss_dssp TTCEEEEEE
T ss_pred CCceeEEEE
Confidence 4 3 98875
No 105
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=97.90 E-value=1.1e-05 Score=71.84 Aligned_cols=64 Identities=17% Similarity=0.120 Sum_probs=53.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEEeccCCC-CCCC-C-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGGDMFV-EVPK-G-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gD~f~-~~P~-~-D~~~l 265 (266)
...+|||||||+|.++..++++ +..+++++|+.+.++.++. .++|+++.+|+.+ ++|. . |+++.
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis 139 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIIS 139 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEE
Confidence 4589999999999999999988 7779999999877766553 1579999999999 7874 3 99874
No 106
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=97.90 E-value=9.9e-06 Score=69.63 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=54.5
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-C-CCCC
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-E-VPKG 260 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~-~P~~ 260 (266)
.+++.++ . +..+|||||||+|.++..+++. ..+++++|+ |..++.++.. ++|+++.+|+.+ + ++.+
T Consensus 60 ~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 135 (285)
T 4htf_A 60 RVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET 135 (285)
T ss_dssp HHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred HHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence 3455544 2 3579999999999999999998 678999999 5677766542 689999999988 3 4443
Q ss_pred --CEEEe
Q 046424 261 --QAIFM 265 (266)
Q Consensus 261 --D~~~l 265 (266)
|+++.
T Consensus 136 ~fD~v~~ 142 (285)
T 4htf_A 136 PVDLILF 142 (285)
T ss_dssp CEEEEEE
T ss_pred CceEEEE
Confidence 98875
No 107
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=97.88 E-value=7.2e-06 Score=66.67 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=51.5
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCceEEeccCCC-CCCCC--CEEEe
Q 046424 202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-CPGVEHVGGDMFV-EVPKG--QAIFM 265 (266)
Q Consensus 202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gD~f~-~~P~~--D~~~l 265 (266)
..+|||||||+|.++..++++ ..+++++|+ |..++.++. .++++++.+|+.+ ++|.+ |++++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 108 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLA 108 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEe
Confidence 579999999999999999998 558999999 557776665 3789999999988 66644 98875
No 108
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=97.88 E-value=1.5e-05 Score=66.73 Aligned_cols=74 Identities=20% Similarity=0.224 Sum_probs=57.8
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCC-C-
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPK-G- 260 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~-~- 260 (266)
..+++.++ .....+|+|||||+|.++..+++..| .+++++|+ |..++.++.+ ++++++.+|+..++|. +
T Consensus 81 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 158 (235)
T 1jg1_A 81 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 158 (235)
T ss_dssp HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCC
Confidence 34555555 66678999999999999999999998 89999996 5677666542 4699999998666664 2
Q ss_pred -CEEEe
Q 046424 261 -QAIFM 265 (266)
Q Consensus 261 -D~~~l 265 (266)
|+++.
T Consensus 159 fD~Ii~ 164 (235)
T 1jg1_A 159 YDVIIV 164 (235)
T ss_dssp EEEEEE
T ss_pred ccEEEE
Confidence 88875
No 109
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=97.88 E-value=1.9e-05 Score=69.04 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=55.4
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCCC-C
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPKG-Q 261 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~~-D 261 (266)
.+++.++ .....+|||||||.|.++..+++++ +.+++++|+ |..++.++.. ++|+++.+|+.+ +|.. |
T Consensus 81 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~fD 157 (318)
T 2fk8_A 81 LNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEPVD 157 (318)
T ss_dssp HHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCCCS
T ss_pred HHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCCcC
Confidence 4455555 5567899999999999999999987 569999999 5566665431 579999999864 4554 9
Q ss_pred EEEe
Q 046424 262 AIFM 265 (266)
Q Consensus 262 ~~~l 265 (266)
+++.
T Consensus 158 ~v~~ 161 (318)
T 2fk8_A 158 RIVS 161 (318)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 110
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=97.87 E-value=1.4e-05 Score=71.22 Aligned_cols=75 Identities=16% Similarity=0.055 Sum_probs=59.7
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC------CCceEEeccCCC-CCCC-
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFV-EVPK- 259 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~-~~P~- 259 (266)
..++.... |....+|+|+|||+|.+++.++... |+.+++++|+ |.+++.++.+ ++|+++.+|+.+ +.|.
T Consensus 193 ~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~ 271 (354)
T 3tma_A 193 QALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFP 271 (354)
T ss_dssp HHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCC
T ss_pred HHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccC
Confidence 34455555 7777899999999999999999998 9999999999 5577766542 489999999998 4433
Q ss_pred C-CEEEe
Q 046424 260 G-QAIFM 265 (266)
Q Consensus 260 ~-D~~~l 265 (266)
. |+++.
T Consensus 272 ~~D~Ii~ 278 (354)
T 3tma_A 272 EVDRILA 278 (354)
T ss_dssp CCSEEEE
T ss_pred CCCEEEE
Confidence 3 88875
No 111
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=97.85 E-value=9.9e-06 Score=67.62 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=53.2
Q ss_pred CCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechH-----HHhhCCCCCCceEEeccCCCC--CC---CC-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLPH-----VLKHAPSCPGVEHVGGDMFVE--VP---KG-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-----vi~~a~~~~ri~~~~gD~f~~--~P---~~-D~~~l 265 (266)
+....+|+|||||+|.++..+++.+ |+.+++++|+.+ .++.++.+++++++.+|+.+. +| .. |++++
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~ 153 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFA 153 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEE
Confidence 4556899999999999999999997 788999999953 345554457899999999983 22 23 88875
No 112
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=97.85 E-value=1.8e-05 Score=64.76 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=51.3
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEEeccCCC-CCCCC-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSCPGVEHVGGDMFV-EVPKG-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gD~f~-~~P~~-D~~~l 265 (266)
+....+|||||||+|.++..++++ ..+++++|+ |..++.++..-+++++.+|+.+ +.+.. |+++.
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~ 108 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWA 108 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEE
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEe
Confidence 445689999999999999999988 568999999 5677776654478889999887 52233 98875
No 113
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=97.85 E-value=1.5e-05 Score=66.46 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=50.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--CCceEEeccCCCCCCC-C-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC--PGVEHVGGDMFVEVPK-G-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--~ri~~~~gD~f~~~P~-~-D~~~l 265 (266)
...+|||||||+|.++..++++.+ +++++|+. ..++.++.. .+++++.+|+.+..|. . |++++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~ 109 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVL 109 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEE
Confidence 457899999999999999999988 68889984 566665542 2899999999875444 3 98875
No 114
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=97.85 E-value=9.7e-06 Score=64.48 Aligned_cols=65 Identities=9% Similarity=0.036 Sum_probs=51.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCC---CCCC-CEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVE---VPKG-QAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~---~P~~-D~~~l 265 (266)
....+|+|||||+|.++..++++ +..+++++|+ |..++.++.+ ++++++.+|+.+. .+.. |++++
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~ 106 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFL 106 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEE
Confidence 35689999999999999999987 7779999999 5677766531 4799999999873 2344 88875
No 115
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=97.85 E-value=2.5e-05 Score=64.03 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=57.1
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCC-C-C
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVP-K-G 260 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P-~-~ 260 (266)
.+++.+. .....+|+|||||+|.++..+++.. |+.+++++|. |..++.++.. ++++++.+|+..++| . .
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 3444444 5566899999999999999999988 7789999998 5566665542 579999999977665 2 3
Q ss_pred -CEEEe
Q 046424 261 -QAIFM 265 (266)
Q Consensus 261 -D~~~l 265 (266)
|+++.
T Consensus 147 fD~v~~ 152 (215)
T 2yxe_A 147 YDRIYT 152 (215)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 88875
No 116
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=97.84 E-value=3.6e-05 Score=60.31 Aligned_cols=71 Identities=25% Similarity=0.246 Sum_probs=54.7
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHhhCCCCCCceEEeccCCC-C--------CCC-
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLPHVLKHAPSCPGVEHVGGDMFV-E--------VPK- 259 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~-~--------~P~- 259 (266)
.+++.+.......+|+|||||+|.++..+++.+ |+.+++++|+.+ .. ..++++++.+|+.+ + ++.
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MD---PIVGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CC---CCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cc---ccCcEEEEEcccccchhhhhhhccCCCC
Confidence 344444423456799999999999999999995 789999999977 22 22789999999998 4 664
Q ss_pred C-CEEEe
Q 046424 260 G-QAIFM 265 (266)
Q Consensus 260 ~-D~~~l 265 (266)
. |+++.
T Consensus 88 ~~D~i~~ 94 (180)
T 1ej0_A 88 KVQVVMS 94 (180)
T ss_dssp CEEEEEE
T ss_pred ceeEEEE
Confidence 3 88875
No 117
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=97.84 E-value=1.9e-05 Score=65.61 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=51.8
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCceEEeccCCCC--CC-C-C-CEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-CPGVEHVGGDMFVE--VP-K-G-QAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gD~f~~--~P-~-~-D~~~l 265 (266)
....+|||||||+|.++..+++. ..+++++|+ |..++.++. .++++++.+|+.+. ++ . . |+|+.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~ 117 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVS 117 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEe
Confidence 35689999999999999999998 568999999 567776654 37899999999874 44 3 3 88874
No 118
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=97.84 E-value=5.5e-06 Score=65.43 Aligned_cols=68 Identities=19% Similarity=0.149 Sum_probs=53.7
Q ss_pred HHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCceEEeccCCCCCCCC--CEEEe
Q 046424 193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-CPGVEHVGGDMFVEVPKG--QAIFM 265 (266)
Q Consensus 193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gD~f~~~P~~--D~~~l 265 (266)
++.++ .....+|||||||+|.++..+++++. +++++|+ |..++.++. .++|+++.+| .++|.+ |+++.
T Consensus 10 ~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~ 81 (170)
T 3i9f_A 10 LPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILF 81 (170)
T ss_dssp HHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEE
T ss_pred HHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEE
Confidence 44444 55678999999999999999999984 8999998 556776654 4799999999 555553 98875
No 119
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=97.84 E-value=7.7e-06 Score=68.72 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=53.1
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC-CC----CCC-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV-EV----PKG-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~----P~~-D~~~l 265 (266)
+....+|+|||||+|..+..++...|+.+++++|+ |..++.++. .++|+++.+|+.+ +. +.. |+++.
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 34568999999999999999999999999999999 456666543 2579999999876 43 234 88874
No 120
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=97.83 E-value=4.8e-06 Score=68.92 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=53.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCCCC-------CC-CE
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVEVP-------KG-QA 262 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~P-------~~-D~ 262 (266)
.+..+|||||||+|..+..+++++| +.+++.+|+ |..++.++. .++|+++.+|..+.+| .. |+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 3568999999999999999999999 899999998 667766553 1579999999976322 23 88
Q ss_pred EEe
Q 046424 263 IFM 265 (266)
Q Consensus 263 ~~l 265 (266)
+++
T Consensus 137 v~~ 139 (223)
T 3duw_A 137 IFI 139 (223)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 121
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=97.83 E-value=3.1e-05 Score=63.94 Aligned_cols=67 Identities=7% Similarity=0.060 Sum_probs=51.8
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-----HHhhCCCCCCceEEeccCCCC-----CCCC-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-----VLKHAPSCPGVEHVGGDMFVE-----VPKG-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-----vi~~a~~~~ri~~~~gD~f~~-----~P~~-D~~~l 265 (266)
.....+|+|||||+|.++..+++..|+.+++.+|+.+ .++.++...+|+++.+|+.++ ++.. |+++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 132 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQ 132 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEE
Confidence 4456799999999999999999999877899999964 334444346789999998763 3334 88874
No 122
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=97.82 E-value=1.1e-05 Score=67.18 Aligned_cols=65 Identities=11% Similarity=0.189 Sum_probs=53.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCC-----CCC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEV-----PKG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~-----P~~-D~~~l 265 (266)
...+|||||||+|..+..+++.+|+.+++++|+ |..++.++.+ ++|+++.+|+.+.. +.. |++++
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 567999999999999999999999999999999 5666666542 57999999998732 234 88875
No 123
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=97.82 E-value=3.1e-05 Score=63.23 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=55.7
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCCCCCC--C-
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFVEVPK--G- 260 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~P~--~- 260 (266)
.+++.++ .....+|+|||||+|.++..+++. ..+++.+|+ |..++.++. .++++++.+|.++..+. .
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 3445555 566789999999999999999999 678999999 556666553 25799999999985442 3
Q ss_pred CEEEe
Q 046424 261 QAIFM 265 (266)
Q Consensus 261 D~~~l 265 (266)
|+++.
T Consensus 145 D~i~~ 149 (210)
T 3lbf_A 145 DAIIV 149 (210)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 88875
No 124
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=97.81 E-value=3.3e-05 Score=66.93 Aligned_cols=73 Identities=14% Similarity=0.273 Sum_probs=56.3
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----C---CCceEEeccCCC-CCCCC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----C---PGVEHVGGDMFV-EVPKG 260 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~---~ri~~~~gD~f~-~~P~~ 260 (266)
..+++.++ .....+|+|||||+|.++..++++.. +++++|+ |..++.++. . ++++++.+|+.+ ++|.-
T Consensus 18 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~f 94 (285)
T 1zq9_A 18 NSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF 94 (285)
T ss_dssp HHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCC
T ss_pred HHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhh
Confidence 45566665 56678999999999999999999954 7899999 456655443 1 579999999998 67755
Q ss_pred CEEEe
Q 046424 261 QAIFM 265 (266)
Q Consensus 261 D~~~l 265 (266)
|+++.
T Consensus 95 D~vv~ 99 (285)
T 1zq9_A 95 DTCVA 99 (285)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 87763
No 125
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=97.79 E-value=2.2e-05 Score=69.39 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=51.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEEeccCCC-CCCC-C-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGGDMFV-EVPK-G-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gD~f~-~~P~-~-D~~~l 265 (266)
...+|+|||||+|.++..++++ +..+++++|..+.++.++. .++|+++.+|+.+ ++|. . |+++.
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs 111 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIIS 111 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEE
Confidence 4579999999999999988886 5568999999877666543 1689999999998 6773 4 98874
No 126
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=97.79 E-value=1.3e-05 Score=64.88 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=52.7
Q ss_pred CCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-C-CC-CC-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-E-VP-KG-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~-~P-~~-D~~~l 265 (266)
.....+|+|+|||+|.++..+++++ |..+++++|+ |..++.++.+ ++++++.+|+.+ + .+ .. |++++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 3456899999999999999999986 7889999999 4567666542 589999999866 2 33 34 88874
No 127
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=97.79 E-value=4.6e-05 Score=63.12 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=51.8
Q ss_pred CCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechH-HH----hhCCCCCCceEEeccCCCC-----CCCC-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLPH-VL----KHAPSCPGVEHVGGDMFVE-----VPKG-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi----~~a~~~~ri~~~~gD~f~~-----~P~~-D~~~l 265 (266)
.....+|+|+|||+|.++..+++.. |+.+++++|..+ .+ +.++..++++++.+|+.+. .+.. |++++
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~ 149 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEE
Confidence 4456799999999999999999885 678999999954 33 3344447899999999872 2334 88874
No 128
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=97.79 E-value=1.4e-05 Score=63.77 Aligned_cols=66 Identities=15% Similarity=0.034 Sum_probs=51.5
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCC------CCC-CEE
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEV------PKG-QAI 263 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~------P~~-D~~ 263 (266)
.....+|+|+|||+|.++..+++ .+..+++++|+ |..++.++.+ ++++++.+|+.+.. +.. |++
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i 120 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 120 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEE
Confidence 33567999999999999999887 56779999999 5677766542 57999999998732 334 888
Q ss_pred Ee
Q 046424 264 FM 265 (266)
Q Consensus 264 ~l 265 (266)
++
T Consensus 121 ~~ 122 (187)
T 2fhp_A 121 LL 122 (187)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 129
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=97.78 E-value=3.2e-05 Score=61.88 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=49.9
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCC--CCCC-C-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFV--EVPK-G-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~--~~P~-~-D~~~l 265 (266)
.....+|+|||||+|.++..++++ ..+++.+|+ |..++.++.+ ++|+++.+|+.. +++. . |++++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~ 95 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIF 95 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEE
Confidence 345689999999999999999988 788999998 5577766542 689999877654 2333 3 88764
No 130
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=97.78 E-value=2.5e-05 Score=66.38 Aligned_cols=66 Identities=12% Similarity=0.203 Sum_probs=53.2
Q ss_pred CC-CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCC---CCC-C-CEEE
Q 046424 199 FE-GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVE---VPK-G-QAIF 264 (266)
Q Consensus 199 ~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~---~P~-~-D~~~ 264 (266)
.. ...+|+|||||+|.++..++++.+. +++++|+ |..++.++.+ +||+++.+|+.+. ++. . |+++
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999999887 9999999 4566665542 5899999999882 433 3 9887
Q ss_pred e
Q 046424 265 M 265 (266)
Q Consensus 265 l 265 (266)
.
T Consensus 125 ~ 125 (259)
T 3lpm_A 125 C 125 (259)
T ss_dssp E
T ss_pred E
Confidence 5
No 131
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=97.78 E-value=1.4e-05 Score=69.01 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=53.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCCC--C-CCC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFVE--V-PKG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~~--~-P~~-D~~~l 265 (266)
+..+|+|||||+|..+..+++..|..+++++|+ |.+++.++. .+|++++.+|.++. . +.. |+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 568999999999999999999888889999999 567776542 37999999998872 2 334 98875
No 132
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=97.78 E-value=2e-05 Score=64.07 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=51.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-CCceEEeccCCCCCCCC-CEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-PGVEHVGGDMFVEVPKG-QAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~ri~~~~gD~f~~~P~~-D~~~l 265 (266)
....+|+|+|||+|.++..+++. +..+++++|+ |..++.++.+ .+++++.+|+++ +|.. |++++
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~ 116 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIM 116 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEE
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEE
Confidence 35579999999999999999987 5567999999 6677776643 389999999987 4555 88875
No 133
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=97.76 E-value=3.1e-05 Score=63.52 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=51.3
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEEeccCCCCCCC-C-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----CPGVEHVGGDMFVEVPK-G-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gD~f~~~P~-~-D~~~l 265 (266)
.....+|||||||+|.++..+++.. .+++++|+ |..++.++. .++|+++.+|+.+..|. . |+++.
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 120 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVV 120 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEE
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEE
Confidence 4456899999999999999999986 47899999 456665543 36899999999984344 3 98875
No 134
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=97.76 E-value=3.6e-05 Score=64.72 Aligned_cols=65 Identities=15% Similarity=0.059 Sum_probs=51.8
Q ss_pred CCceEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHhhCCC-CCCceEEeccCCCC--CC---C-C-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSK----YPQLRGINFDL-PHVLKHAPS-CPGVEHVGGDMFVE--VP---K-G-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~----~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gD~f~~--~P---~-~-D~~~l 265 (266)
+..+|||||||+|..+..+++. +|+.+++.+|+ |..++.++. .++|+++.+|..+. +| . . |++++
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence 3479999999999999999998 79999999999 456665543 36899999999873 22 2 2 88774
No 135
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=97.76 E-value=4e-05 Score=63.25 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=50.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----C-------CCceEEeccCCC-CCCCC--CEEE
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----C-------PGVEHVGGDMFV-EVPKG--QAIF 264 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~-------~ri~~~~gD~f~-~~P~~--D~~~ 264 (266)
....+|||||||+|.++..++++ ..+++++|+ |..++.++. . .+++++.+|+.+ +++.+ |+++
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 36689999999999999999998 668999999 556665543 1 368999999998 66654 9887
Q ss_pred e
Q 046424 265 M 265 (266)
Q Consensus 265 l 265 (266)
+
T Consensus 107 ~ 107 (235)
T 3sm3_A 107 M 107 (235)
T ss_dssp E
T ss_pred E
Confidence 5
No 136
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=97.76 E-value=2.4e-05 Score=66.47 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=53.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-CCCceEEeccCCC-CCCCC--CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-CPGVEHVGGDMFV-EVPKG--QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-~~ri~~~~gD~f~-~~P~~--D~~~l 265 (266)
...+|+|||||.|.++..+++++|..+++++|+. ..++.++. .++++++.+|+.+ +++.+ |+++.
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 154 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR 154 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEE
Confidence 5679999999999999999999999999999994 56666554 3689999999987 56553 88863
No 137
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=97.75 E-value=5.4e-05 Score=65.98 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=56.4
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----CCCceEEeccCCC-CCCCC--C
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----CPGVEHVGGDMFV-EVPKG--Q 261 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----~~ri~~~~gD~f~-~~P~~--D 261 (266)
..+++..+ .....+|+|||||+|.++..++++ ..+++++|+. ..++.++. .++++++.+|+.+ ++|.. |
T Consensus 40 ~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD 116 (295)
T 3gru_A 40 NKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFN 116 (295)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCS
T ss_pred HHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCcc
Confidence 45566665 556789999999999999999998 4678999994 45655543 3789999999998 77763 8
Q ss_pred EEE
Q 046424 262 AIF 264 (266)
Q Consensus 262 ~~~ 264 (266)
+++
T Consensus 117 ~Iv 119 (295)
T 3gru_A 117 KVV 119 (295)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 138
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=97.75 E-value=7.7e-06 Score=66.76 Aligned_cols=64 Identities=11% Similarity=0.109 Sum_probs=50.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCceEEeccCCCCCCC-C-CEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFVEVPK-G-QAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~~~P~-~-D~~~l 265 (266)
....+|+|+|||.|.++..++...|+.+.+..|.. ..++.++.+ .++++ .|..+..|. . |+++.
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa 121 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFL 121 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhH
Confidence 46789999999999999999999999999999996 477766542 24555 787774444 3 98874
No 139
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=97.74 E-value=5.6e-05 Score=62.06 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=53.0
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEEeccCCC---CCCC-C-CEE
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSCPGVEHVGGDMFV---EVPK-G-QAI 263 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gD~f~---~~P~-~-D~~ 263 (266)
+.+++.++ ....+|+|||||+|.++..+++. + .+++++|+ |..++.++.. ..+++.+|+.+ +++. . |++
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEK-LDHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTT-SSEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHh-CCcEEEcchhhcCCCCCCCccCEE
Confidence 34555543 35689999999999999999998 5 89999999 4577766643 24788999875 3443 3 888
Q ss_pred Ee
Q 046424 264 FM 265 (266)
Q Consensus 264 ~l 265 (266)
++
T Consensus 98 ~~ 99 (230)
T 3cc8_A 98 IF 99 (230)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 140
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.73 E-value=7.6e-06 Score=67.72 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=51.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCCCC--------CC-CE
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVEVP--------KG-QA 262 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~P--------~~-D~ 262 (266)
...+|||||||+|..+..+++.+| +.+++.+|+ |..++.++. .++|+++.+|..+..| .. |+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 567999999999999999999998 889999999 456666543 1579999999876322 33 88
Q ss_pred EEe
Q 046424 263 IFM 265 (266)
Q Consensus 263 ~~l 265 (266)
+++
T Consensus 144 v~~ 146 (225)
T 3tr6_A 144 IYI 146 (225)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 141
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=97.73 E-value=2.4e-05 Score=67.29 Aligned_cols=67 Identities=12% Similarity=0.013 Sum_probs=54.8
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCC-CCCC-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVE-VPKG-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~-~P~~-D~~~l 265 (266)
+.+..+|+|+|||+|.++..++++.+..+++.+|+ |..++.++.+ ++++++.+|.++. .+.. |++++
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~ 192 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIM 192 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEE
Confidence 45668999999999999999999999899999999 6677766542 5789999999885 2224 88876
No 142
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=97.73 E-value=3.1e-05 Score=64.81 Aligned_cols=55 Identities=27% Similarity=0.317 Sum_probs=46.1
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCCceEEeccCCC
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS---CPGVEHVGGDMFV 255 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~---~~ri~~~~gD~f~ 255 (266)
.....+|||||||+|.++..+++..+ +++++|+ |..++.++. ..+++++.+|+.+
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~ 112 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLV 112 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTC
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccc
Confidence 34568899999999999999999998 7899999 456766543 2589999999998
No 143
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=97.73 E-value=4.4e-05 Score=64.55 Aligned_cols=67 Identities=12% Similarity=0.259 Sum_probs=52.3
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEEeccCCC-CCCC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----CPGVEHVGGDMFV-EVPK 259 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gD~f~-~~P~ 259 (266)
..+++..+ .....+|+|||||+|.++..++++. .+++++|+ |..++.++. .++++++.+|+.+ +++.
T Consensus 20 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~ 92 (244)
T 1qam_A 20 DKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK 92 (244)
T ss_dssp HHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred HHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCccc
Confidence 34555555 5566899999999999999999997 68999999 456655443 3689999999998 6664
No 144
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=97.73 E-value=2.2e-05 Score=65.39 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=48.7
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCC-C-CEEEe
Q 046424 203 NQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPK-G-QAIFM 265 (266)
Q Consensus 203 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~-~-D~~~l 265 (266)
.+|||||||+|.++..+++ +..+++++|+ |..++.++.. .+|+++.+|+.+..|. . |+++.
T Consensus 68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~ 138 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFD 138 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEE
T ss_pred CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEE
Confidence 5999999999999999976 6778999999 5567665531 4699999999984444 3 98874
No 145
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=97.73 E-value=5.8e-05 Score=66.61 Aligned_cols=74 Identities=16% Similarity=0.167 Sum_probs=55.4
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC-----------------CCCceEEec
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDL-PHVLKHAPS-----------------CPGVEHVGG 251 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~-----------------~~ri~~~~g 251 (266)
.++..++ .....+|||||||+|.++..+++. .|+.+++.+|+ |..++.++. .++|+++.+
T Consensus 96 ~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 96 MILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 3555555 556789999999999999999998 68899999999 455555433 158999999
Q ss_pred cCCCC---CCCC--CEEEe
Q 046424 252 DMFVE---VPKG--QAIFM 265 (266)
Q Consensus 252 D~f~~---~P~~--D~~~l 265 (266)
|+.+. ++.+ |++++
T Consensus 175 d~~~~~~~~~~~~fD~V~~ 193 (336)
T 2b25_A 175 DISGATEDIKSLTFDAVAL 193 (336)
T ss_dssp CTTCCC-------EEEEEE
T ss_pred ChHHcccccCCCCeeEEEE
Confidence 99883 4443 88875
No 146
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=97.72 E-value=2.5e-05 Score=66.46 Aligned_cols=63 Identities=6% Similarity=0.004 Sum_probs=49.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-----------------------CCCceEEeccCCC-
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-----------------------CPGVEHVGGDMFV- 255 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-----------------------~~ri~~~~gD~f~- 255 (266)
...+|+|||||+|..+..|++. ..+++++|+. ..++.++. ..+|+++.+|+++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 5579999999999999999987 5689999995 46665421 2579999999999
Q ss_pred CCC--CC-CEEEe
Q 046424 256 EVP--KG-QAIFM 265 (266)
Q Consensus 256 ~~P--~~-D~~~l 265 (266)
+.+ .. |+++.
T Consensus 146 ~~~~~~~FD~V~~ 158 (252)
T 2gb4_A 146 PRANIGKFDRIWD 158 (252)
T ss_dssp GGGCCCCEEEEEE
T ss_pred CcccCCCEEEEEE
Confidence 443 34 98874
No 147
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=97.72 E-value=1.7e-05 Score=67.41 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=52.0
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCC-CCC----CC-CEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV-EVP----KG-QAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~-~~P----~~-D~~~l 265 (266)
....+|+|||||+|..+..++..+|+.+++++|.. ..++.++. ..+|+++.+|..+ +.. .. |+++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 45689999999999999999999999999999984 45655543 2469999999876 321 33 88864
No 148
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=97.72 E-value=2.7e-05 Score=64.43 Aligned_cols=65 Identities=9% Similarity=0.166 Sum_probs=52.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC---CCC-----CC-CE
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV---EVP-----KG-QA 262 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~---~~P-----~~-D~ 262 (266)
+..+|||||||+|..+..++++.| +.+++.+|+ |..++.++.+ ++|+++.+|..+ ..+ .. |+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 568999999999999999999875 889999999 5677766542 579999999754 233 23 98
Q ss_pred EEe
Q 046424 263 IFM 265 (266)
Q Consensus 263 ~~l 265 (266)
+++
T Consensus 138 V~~ 140 (221)
T 3u81_A 138 VFL 140 (221)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 149
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=97.72 E-value=3.4e-05 Score=64.42 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=45.8
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-H-HHhhC---CCC------CCceEEeccCCC
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-H-VLKHA---PSC------PGVEHVGGDMFV 255 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~-vi~~a---~~~------~ri~~~~gD~f~ 255 (266)
....+|||||||+|.++..+++++|+.+++++|+. + +++.| +.. ++|+++.+|..+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~ 89 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES 89 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH
Confidence 35689999999999999999999999999999996 4 44433 432 579999999865
No 150
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=97.70 E-value=1e-05 Score=68.00 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=49.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCceEEeccCCC---CCCCC--CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-----CPGVEHVGGDMFV---EVPKG--QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-----~~ri~~~~gD~f~---~~P~~--D~~~l 265 (266)
...+|||||||.|..+..+++..|. +.+++|+ |.+++.+++ ..+++++.+|... ++|.+ |.+++
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~ 134 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred CCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEE
Confidence 4589999999999999999998885 7889998 568887764 2567888887543 45553 76653
No 151
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=97.69 E-value=3.5e-05 Score=69.45 Aligned_cols=62 Identities=19% Similarity=0.179 Sum_probs=49.6
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEEeccCCC-CCCCC-CEEE
Q 046424 202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGGDMFV-EVPKG-QAIF 264 (266)
Q Consensus 202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gD~f~-~~P~~-D~~~ 264 (266)
.++|||||||+|.+++..+++.. -+++.+|..++++.|+. .++|+++.+|+.+ ++|.. |+++
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~Dviv 154 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIV 154 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEE
T ss_pred CCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEE
Confidence 47899999999999887776644 47899998766665543 2789999999998 78876 9885
No 152
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=97.69 E-value=4.1e-05 Score=68.96 Aligned_cols=66 Identities=17% Similarity=0.103 Sum_probs=52.8
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEEeccCCC-CCCCC-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGGDMFV-EVPKG-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gD~f~-~~P~~-D~~~l 265 (266)
.....+|||||||+|.++..++++. ..+++++|....++.++. .++|+++.+|+.+ +.|.. |+++.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~ 135 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIIS 135 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEE
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEE
Confidence 4456899999999999999999883 348999999876666543 1679999999988 67655 99874
No 153
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=97.69 E-value=3.6e-05 Score=66.34 Aligned_cols=65 Identities=17% Similarity=0.060 Sum_probs=52.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCC-C-CEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPK-G-QAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~-~-D~~~l 265 (266)
+...+|+|+|||+|.++..+++..+. +++.+|+ |..++.++.+ .+++++.+|+++..+. . |++++
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~ 198 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILM 198 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEE
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEE
Confidence 35689999999999999999999887 8999999 4567665531 4699999999984433 3 98876
No 154
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=97.69 E-value=4.5e-05 Score=63.42 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=51.1
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCC-CCCCC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFV-EVPKG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~-~~P~~-D~~~l 265 (266)
...+|+|||||+|.++..+++. ..+++++|+ |..++.++.. .+++++.+|+.+ +.+.. |+++.
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 107 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITC 107 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEE
Confidence 4589999999999999999998 457999999 5677766542 289999999988 56655 99875
No 155
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=97.68 E-value=1.9e-05 Score=64.70 Aligned_cols=65 Identities=22% Similarity=0.172 Sum_probs=51.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCC--CCCC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVE--VPKG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~--~P~~-D~~~l 265 (266)
+..+|||||||+|..+..+++..| +.+++.+|+ |..++.++.+ ++|+++.+|.++. ...+ |++++
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 132 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFM 132 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEE
Confidence 467999999999999999999998 889999999 5577666532 5799999998762 2233 77764
No 156
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=97.67 E-value=2.8e-05 Score=61.95 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=54.5
Q ss_pred HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCC--C-
Q 046424 192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPK--G- 260 (266)
Q Consensus 192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~--~- 260 (266)
+++.++ .....+|+|||||+|.++..+++.. .+++++|. |..++.++.+ ++++++.+|+.+++|. .
T Consensus 25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (192)
T 1l3i_A 25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (192)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence 344444 5567899999999999999999988 78999999 5566665531 6899999998774442 3
Q ss_pred CEEEe
Q 046424 261 QAIFM 265 (266)
Q Consensus 261 D~~~l 265 (266)
|+++.
T Consensus 102 D~v~~ 106 (192)
T 1l3i_A 102 DIAVV 106 (192)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88875
No 157
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=97.67 E-value=8.8e-05 Score=60.30 Aligned_cols=61 Identities=20% Similarity=0.326 Sum_probs=48.4
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEEeccCCCC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVE 256 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~~ 256 (266)
..+.+.+..++...+|||+|||+|.++..++++ ..+++.+|+.+. ...++|+++.+|+.+.
T Consensus 14 ~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~ 74 (191)
T 3dou_A 14 EFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKE 74 (191)
T ss_dssp HHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSS
T ss_pred HHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCH
Confidence 345566653456789999999999999999988 778999999653 2236899999999873
No 158
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=97.67 E-value=3.6e-05 Score=64.89 Aligned_cols=41 Identities=27% Similarity=0.169 Sum_probs=35.9
Q ss_pred CCceEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHhhCC
Q 046424 201 GLNQLVDVAGGLGANLKSIVSK--YPQLRGINFDL-PHVLKHAP 241 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~--~P~l~~~v~Dl-p~vi~~a~ 241 (266)
...+|+|+|||+|.++..+++. +|..+++++|+ |..++.++
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~ 94 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAA 94 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHH
Confidence 4579999999999999999998 88889999999 56777665
No 159
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=97.66 E-value=1.6e-05 Score=67.63 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=50.0
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----C-CceEEeccCCCCCCC-C-CEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC----P-GVEHVGGDMFVEVPK-G-QAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~-ri~~~~gD~f~~~P~-~-D~~~l 265 (266)
....+|+|||||+|.++..+++..+ +++++|+ |..++.++.+ . .+++..+|+.+.+|. . |+++.
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~ 190 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVA 190 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEE
Confidence 4568999999999999999999877 8999999 5566665542 1 189999998876554 3 88864
No 160
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=97.65 E-value=5.4e-05 Score=64.99 Aligned_cols=72 Identities=11% Similarity=0.127 Sum_probs=54.7
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCC-CCCCC-CE
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFV-EVPKG-QA 262 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~-~~P~~-D~ 262 (266)
.+++.++ .....+|||||||+|.++..+++. ..+++++|+ |..++.++.. -+++++.+|+.+ +.+.. |+
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 187 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF 187 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence 4444444 335689999999999999999998 568999999 4566665532 289999999998 44444 99
Q ss_pred EEe
Q 046424 263 IFM 265 (266)
Q Consensus 263 ~~l 265 (266)
++.
T Consensus 188 i~~ 190 (286)
T 3m70_A 188 IVS 190 (286)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 161
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=97.65 E-value=5.9e-05 Score=61.82 Aligned_cols=72 Identities=14% Similarity=0.079 Sum_probs=53.8
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEEeccCCCC-----CCC-C-CE
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSCPGVEHVGGDMFVE-----VPK-G-QA 262 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gD~f~~-----~P~-~-D~ 262 (266)
.+++.+. .....+|||||||+|.++..+++. ..+++++|+ |..++.++...++++..+|+.+- .+. . |+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 3445444 335589999999999999999998 668999999 56777777667888888887652 222 2 88
Q ss_pred EEe
Q 046424 263 IFM 265 (266)
Q Consensus 263 ~~l 265 (266)
++.
T Consensus 120 v~~ 122 (227)
T 3e8s_A 120 ICA 122 (227)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 162
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=97.65 E-value=7.1e-05 Score=63.60 Aligned_cols=68 Identities=24% Similarity=0.285 Sum_probs=53.7
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--CCceEEeccCCC-CCCC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC--PGVEHVGGDMFV-EVPK 259 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--~ri~~~~gD~f~-~~P~ 259 (266)
..+++..+ .....+|+|||||+|.++..++++ +..+++++|+. ..++.++.+ .+++++.+|+.+ ++|.
T Consensus 21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCS 92 (249)
T ss_dssp HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGG
T ss_pred HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhH
Confidence 45566665 556789999999999999999987 56789999995 466666543 579999999998 6664
No 163
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=97.65 E-value=0.00012 Score=61.23 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=56.0
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCCC-CC-C
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVEV-PK-G 260 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~-P~-~ 260 (266)
.++...+ .....+|+|||||+|.++..++++ ..+++++|+ |..++.++. .++++++.+|+.+.. +. .
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 3445554 556789999999999999999999 778999997 456665543 168999999999865 54 3
Q ss_pred -CEEEe
Q 046424 261 -QAIFM 265 (266)
Q Consensus 261 -D~~~l 265 (266)
|++++
T Consensus 159 ~D~v~~ 164 (248)
T 2yvl_A 159 FHAAFV 164 (248)
T ss_dssp BSEEEE
T ss_pred ccEEEE
Confidence 99875
No 164
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=97.64 E-value=5.4e-05 Score=61.35 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=48.9
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCC-CCCCC--CEEEe
Q 046424 204 QLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFV-EVPKG--QAIFM 265 (266)
Q Consensus 204 ~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~-~~P~~--D~~~l 265 (266)
+|+|||||+|.++..+++. ..+++++|+ |..++.++.. .+++++.+|+.+ ++|.+ |+++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 100 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVS 100 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEE
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEE
Confidence 9999999999999999987 568999999 4577666542 389999999998 66643 98874
No 165
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=97.63 E-value=2.5e-05 Score=69.32 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=53.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCC---CCCC-C-CEE
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFV---EVPK-G-QAI 263 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~---~~P~-~-D~~ 263 (266)
....+|||||||+|..+..+++..|..+++++|+ |.+++.++. .+||+++.+|.++ ..+. . |+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4668999999999999999999988999999999 557776543 2689999999876 2443 3 998
Q ss_pred Ee
Q 046424 264 FM 265 (266)
Q Consensus 264 ~l 265 (266)
+.
T Consensus 199 i~ 200 (334)
T 1xj5_A 199 IV 200 (334)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 166
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=97.63 E-value=3e-05 Score=69.77 Aligned_cols=67 Identities=13% Similarity=0.006 Sum_probs=55.3
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCCC-C-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVPK-G-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~-~-D~~~l 265 (266)
|....+|+|+|||+|.+++.+++..+..+++++|+ |.+++.++.+ ++|+++.+|+.+ +.|. . |+++.
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~ 292 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAIS 292 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEE
Confidence 55678999999999999999999999888999999 4577766542 589999999998 6553 3 88875
No 167
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=97.63 E-value=6.4e-05 Score=65.70 Aligned_cols=65 Identities=25% Similarity=0.312 Sum_probs=52.4
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----C-CCceEEeccCCC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----C-PGVEHVGGDMFV 255 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~-~ri~~~~gD~f~ 255 (266)
..+++.+. .....++||+|||+|.++..+++++|+.+++.+|. |..++.++. . ++++++.+||.+
T Consensus 16 ~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~ 86 (301)
T 1m6y_A 16 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE 86 (301)
T ss_dssp HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG
T ss_pred HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence 34555555 55568999999999999999999999999999999 457766543 1 689999999765
No 168
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=97.62 E-value=2.8e-05 Score=65.10 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=50.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCC-CCCCC--CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFV-EVPKG--QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~-~~P~~--D~~~l 265 (266)
...+|||||||+|.++..++++. ..+++++|+ |..++.++.. .+++++.+|+.+ +.+.+ |++++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 152 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWI 152 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEE
Confidence 46899999999999999999987 568999998 5577665532 358999999877 55553 98875
No 169
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=97.61 E-value=3.4e-05 Score=66.39 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=50.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----------CCCceEEeccCCC-C---CCCC--CE
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----------CPGVEHVGGDMFV-E---VPKG--QA 262 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----------~~ri~~~~gD~f~-~---~P~~--D~ 262 (266)
.+..+|||||||+|.++..++++.+ +++++|+. ..++.++. ..++.+..+|+.+ + ++.+ |+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 133 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence 3568999999999999999999854 89999994 56666532 1578999999987 5 4543 98
Q ss_pred EEe
Q 046424 263 IFM 265 (266)
Q Consensus 263 ~~l 265 (266)
|+.
T Consensus 134 V~~ 136 (293)
T 3thr_A 134 VIC 136 (293)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 170
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=97.61 E-value=8.1e-05 Score=61.63 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=52.5
Q ss_pred CCCCceEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccC--CCCCCCC--CEEEe
Q 046424 199 FEGLNQLVDVAGG-LGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDM--FVEVPKG--QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG-~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~--f~~~P~~--D~~~l 265 (266)
.+...+|+||||| +|.++..+++.. ..+++++|+ |..++.++.+ -+++++.+|+ +.++|.+ |+++.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~ 129 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFS 129 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEE
Confidence 3467899999999 999999999987 788999999 5567766532 2799999996 4566643 98874
No 171
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=97.60 E-value=3.2e-05 Score=64.81 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=46.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV 255 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~ 255 (266)
+..+|+|||||+|..+..+++.+| ..+++++|. |..++.++.+ .+|+++.+|..+
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 123 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE 123 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence 568999999999999999999998 789999999 5566665532 469999999876
No 172
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=97.60 E-value=3.3e-05 Score=67.54 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=53.1
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCC-C--CCC-C-CEE
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFV-E--VPK-G-QAI 263 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~-~--~P~-~-D~~ 263 (266)
.+..+|+|||||.|..+..+++..|..+++++|+ |.+++.++. .+|++++.+|.++ . .+. . |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 3568999999999999999999888899999999 557766542 2689999999987 2 133 4 988
Q ss_pred Ee
Q 046424 264 FM 265 (266)
Q Consensus 264 ~l 265 (266)
+.
T Consensus 174 i~ 175 (304)
T 3bwc_A 174 II 175 (304)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 173
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=97.60 E-value=3e-05 Score=67.89 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=53.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCC--CC-CCC-CEEE
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFV--EV-PKG-QAIF 264 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~--~~-P~~-D~~~ 264 (266)
.+..+|+|||||+|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|.++ +. +.. |+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999989999999999 567766542 3689999999876 22 334 8887
Q ss_pred e
Q 046424 265 M 265 (266)
Q Consensus 265 l 265 (266)
+
T Consensus 174 ~ 174 (304)
T 2o07_A 174 T 174 (304)
T ss_dssp E
T ss_pred E
Confidence 4
No 174
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=97.60 E-value=1.8e-05 Score=65.65 Aligned_cols=66 Identities=6% Similarity=-0.000 Sum_probs=52.5
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCC---CC-----CC-C
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVE---VP-----KG-Q 261 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~---~P-----~~-D 261 (266)
.+..+|+|||||+|..+..+++..| +.+++.+|+ |..++.++. .++|+++.+|.++. ++ .. |
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 3568999999999999999999988 789999999 666666553 16899999998763 21 34 8
Q ss_pred EEEe
Q 046424 262 AIFM 265 (266)
Q Consensus 262 ~~~l 265 (266)
++++
T Consensus 148 ~v~~ 151 (229)
T 2avd_A 148 VAVV 151 (229)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 175
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=97.59 E-value=9.9e-05 Score=63.29 Aligned_cols=65 Identities=14% Similarity=0.052 Sum_probs=50.8
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CC-CC-C-CEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EV-PK-G-QAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~-P~-~-D~~~l 265 (266)
....+|||||||+|.++..+++. +..+++++|+ |..++.++.. .+|+++.+|+.+ ++ +. . |+++.
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 139 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISS 139 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEE
Confidence 45689999999999999998776 5668999999 4566665431 469999999998 66 34 3 98874
No 176
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=97.59 E-value=5.9e-05 Score=61.30 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=49.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCC-CCCCC--CEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFV-EVPKG--QAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~-~~P~~--D~~~l 265 (266)
....+|+|||||+|.....++.. +..+++++|. |..++.++.. .+++++.+|+.+ ++|.+ |+++.
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 95 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYS 95 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEE
Confidence 35689999999999985555544 5679999999 4566665532 679999999988 66654 98874
No 177
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=97.59 E-value=5.6e-05 Score=65.90 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=51.5
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC-CCCCCC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV-EVPKGQ 261 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~P~~D 261 (266)
..+++..+ .....+|+|||||+|.++..++++ ..+++++|+ |..++.++. .++++++.+|+.+ +.+.-|
T Consensus 32 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~D 108 (299)
T 2h1r_A 32 DKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFD 108 (299)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCCS
T ss_pred HHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccCC
Confidence 34555555 556789999999999999999987 458999999 456665543 2689999999998 555448
Q ss_pred EEEe
Q 046424 262 AIFM 265 (266)
Q Consensus 262 ~~~l 265 (266)
+++.
T Consensus 109 ~Vv~ 112 (299)
T 2h1r_A 109 VCTA 112 (299)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 178
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.59 E-value=4.6e-05 Score=61.32 Aligned_cols=64 Identities=11% Similarity=0.015 Sum_probs=50.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCC---CC-CC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVE---VP-KG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~---~P-~~-D~~~l 265 (266)
...+|+|+|||+|.++..++++ +..+++.+|+ |..++.++.+ ++++++.+|+.+. ++ .. |++++
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~ 119 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLA 119 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEE
Confidence 4579999999999999988774 6668999999 5677776542 5899999999872 33 33 99875
No 179
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=97.59 E-value=9.5e-05 Score=63.28 Aligned_cols=62 Identities=15% Similarity=0.044 Sum_probs=51.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----------CCceEEeccCCCCCCCC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC----------PGVEHVGGDMFVEVPKG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----------~ri~~~~gD~f~~~P~~-D~~~l 265 (266)
+..+|+|||||+|..+..+++. | .+++++|+ |.+++.++++ +|++++.+|.++-. .. |++++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~ 145 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFC 145 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEE
Confidence 5689999999999999999998 8 89999999 5688877652 58999999998744 44 88875
No 180
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=97.58 E-value=0.00012 Score=60.68 Aligned_cols=72 Identities=10% Similarity=0.176 Sum_probs=55.0
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----CCceEEeccCCCCCCC--C-CE
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC----PGVEHVGGDMFVEVPK--G-QA 262 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~ri~~~~gD~f~~~P~--~-D~ 262 (266)
.+++.+. .....+|+|||||+|.++..+++.. .+++++|. |..++.++.. .+++++.+|+.+..|. . |+
T Consensus 61 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 137 (231)
T 1vbf_A 61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR 137 (231)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccE
Confidence 4455554 5566899999999999999999987 68999998 5566665532 3899999999885442 3 88
Q ss_pred EEe
Q 046424 263 IFM 265 (266)
Q Consensus 263 ~~l 265 (266)
++.
T Consensus 138 v~~ 140 (231)
T 1vbf_A 138 VVV 140 (231)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 181
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=97.58 E-value=3e-05 Score=67.09 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=52.9
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCC--CeEEEeech-HHHhhCCCC--CCceEEeccCCC-CCCC
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ--LRGINFDLP-HVLKHAPSC--PGVEHVGGDMFV-EVPK 259 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--l~~~v~Dlp-~vi~~a~~~--~ri~~~~gD~f~-~~P~ 259 (266)
.+++..+ .....+|+|||||+|.++..++++.+. .+++++|+. ..++.+++. ++++++.+|+++ +++.
T Consensus 33 ~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 33 AIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred HHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 4556555 556789999999999999999998764 568999994 466665543 689999999998 5543
No 182
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=97.58 E-value=3.3e-05 Score=67.33 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=52.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCCC--C-CCC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFVE--V-PKG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~~--~-P~~-D~~~l 265 (266)
...+|+|||||+|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|.++. . +.. |+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 458999999999999999999888899999999 557765542 26899999998762 2 334 98874
No 183
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=97.57 E-value=7.8e-05 Score=73.02 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=52.9
Q ss_pred CCceEEEecCCccHHHHHHHHHC-CCCeEEEeech-HHHhhCCC------------CCCceEEeccCCC-CCCC-C-CEE
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLP-HVLKHAPS------------CPGVEHVGGDMFV-EVPK-G-QAI 263 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~a~~------------~~ri~~~~gD~f~-~~P~-~-D~~ 263 (266)
...+|||||||+|.++..+++.. |..+++++|+. ..++.|+. .++|+++.+|+.+ +.+. . |++
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 56899999999999999999998 66799999994 56665533 2579999999998 5554 3 998
Q ss_pred Ee
Q 046424 264 FM 265 (266)
Q Consensus 264 ~l 265 (266)
+.
T Consensus 801 V~ 802 (950)
T 3htx_A 801 TC 802 (950)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 184
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=97.57 E-value=8.2e-05 Score=60.55 Aligned_cols=63 Identities=11% Similarity=0.037 Sum_probs=49.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----C-CceEEeccCCCCCCCC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC----P-GVEHVGGDMFVEVPKG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~-ri~~~~gD~f~~~P~~-D~~~l 265 (266)
...+|+|+|||+|.++..+++..+ .+++++|+ |..++.++.+ . +++++.+|+.+ +|.. |++++
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~ 118 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIM 118 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEE
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEE
Confidence 457999999999999999998844 37999999 5677665542 2 79999999987 4444 88875
No 185
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=97.56 E-value=0.00013 Score=66.03 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=54.5
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechH-HHhhCCCCCCceEEeccCCCCCCC-C-CEEEe
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLPH-VLKHAPSCPGVEHVGGDMFVEVPK-G-QAIFM 265 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi~~a~~~~ri~~~~gD~f~~~P~-~-D~~~l 265 (266)
.+++.+. .....+|+|+|||+|.++..+++++ +..+++++|+.+ .++.+ ++++++.+|+++..+. . |+++.
T Consensus 30 ~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 30 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence 3444444 3345699999999999999999987 788999999954 55444 6899999999985443 4 99875
No 186
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=97.56 E-value=1.4e-05 Score=67.46 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=51.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCC-CCeEEEeech-HHHhhCCC-------CCCceEEeccCCCCC--------CCC-CE
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLP-HVLKHAPS-------CPGVEHVGGDMFVEV--------PKG-QA 262 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~a~~-------~~ri~~~~gD~f~~~--------P~~-D~ 262 (266)
+..+|||||||+|..+..+++..| +.+++.+|+. ..++.++. .++|+++.+|..+.. +.. |+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 568999999999999999999997 8899999994 45555443 258999999987732 234 88
Q ss_pred EEe
Q 046424 263 IFM 265 (266)
Q Consensus 263 ~~l 265 (266)
+++
T Consensus 140 V~~ 142 (242)
T 3r3h_A 140 IFI 142 (242)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 187
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=97.55 E-value=9.2e-05 Score=64.90 Aligned_cols=74 Identities=19% Similarity=0.247 Sum_probs=56.5
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCC-C-C
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVP-K-G 260 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P-~-~ 260 (266)
.+++.+. .....+|+|||||.|.++..+++..+ +.+++++|+ |..++.++.+ ++|+++.+|+.+..| . .
T Consensus 66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 144 (317)
T 1dl5_A 66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP 144 (317)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCC
Confidence 3445454 55668999999999999999999988 488999998 4566665532 569999999987443 2 3
Q ss_pred -CEEEe
Q 046424 261 -QAIFM 265 (266)
Q Consensus 261 -D~~~l 265 (266)
|+++.
T Consensus 145 fD~Iv~ 150 (317)
T 1dl5_A 145 YDVIFV 150 (317)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 88875
No 188
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=97.55 E-value=0.00014 Score=59.47 Aligned_cols=62 Identities=16% Similarity=0.015 Sum_probs=46.5
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEEeccCCC-CCCCC--CEEEe
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFV-EVPKG--QAIFM 265 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~-~~P~~--D~~~l 265 (266)
.+++.+.......+|+|||||+|.++..+. .+++++|+.+. +++++.+|+.+ ++|.+ |+++.
T Consensus 57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 57 RIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp HHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred HHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEE
Confidence 344444323456899999999999998873 57899998654 68889999988 66654 88874
No 189
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=97.55 E-value=2.8e-05 Score=68.55 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=52.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCCC---CCCC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFVE---VPKG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~~---~P~~-D~~~l 265 (266)
...+|+|||||+|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|.++. .+.. |+++.
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 568999999999999999999888999999999 567776532 26899999998763 2334 88874
No 190
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=97.55 E-value=0.00011 Score=66.72 Aligned_cols=74 Identities=9% Similarity=0.007 Sum_probs=57.1
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEEee
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ--------------------------------------LRGINFD 232 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--------------------------------------l~~~v~D 232 (266)
.++.... |.+...|+|.+||+|.++++.+....+ .+++++|
T Consensus 192 ~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvD 270 (393)
T 3k0b_A 192 ALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGD 270 (393)
T ss_dssp HHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEE
T ss_pred HHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEE
Confidence 4555555 877789999999999999998876554 5699999
Q ss_pred c-hHHHhhCCCC-------CCceEEeccCCC-CCCCC-CEEEe
Q 046424 233 L-PHVLKHAPSC-------PGVEHVGGDMFV-EVPKG-QAIFM 265 (266)
Q Consensus 233 l-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~~-D~~~l 265 (266)
+ |.+++.|+.+ ++|+++.+|+++ +.|.. |+++.
T Consensus 271 id~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~ 313 (393)
T 3k0b_A 271 IDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVA 313 (393)
T ss_dssp SCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEE
Confidence 9 4577766542 579999999998 44444 98875
No 191
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=97.54 E-value=2.3e-05 Score=66.38 Aligned_cols=65 Identities=11% Similarity=0.145 Sum_probs=52.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCC---C------CCC-C
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVE---V------PKG-Q 261 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~---~------P~~-D 261 (266)
+..+|||||||+|..+..+++..| +.+++.+|+ |..++.++.+ ++|+++.+|..+. + +.. |
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 568999999999999999999998 889999999 5566665531 5899999998762 2 233 9
Q ss_pred EEEe
Q 046424 262 AIFM 265 (266)
Q Consensus 262 ~~~l 265 (266)
++++
T Consensus 159 ~V~~ 162 (247)
T 1sui_A 159 FIFV 162 (247)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 192
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=97.52 E-value=3.4e-05 Score=66.75 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=53.3
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCCC---CCCC-CEEE
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFVE---VPKG-QAIF 264 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~~---~P~~-D~~~ 264 (266)
....+|+|||||.|..+..+++..|..+++++|+ |.+++.++. .+|++++.+|..+. .+.. |+++
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 3568999999999999999999888999999999 567776542 26899999998762 3444 8887
Q ss_pred e
Q 046424 265 M 265 (266)
Q Consensus 265 l 265 (266)
.
T Consensus 157 ~ 157 (283)
T 2i7c_A 157 V 157 (283)
T ss_dssp E
T ss_pred E
Confidence 5
No 193
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=97.52 E-value=9.9e-05 Score=63.54 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=50.0
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC---CCCceEEeccCCC-CCC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS---CPGVEHVGGDMFV-EVP 258 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~---~~ri~~~~gD~f~-~~P 258 (266)
..+++..+ .... +|+|||||+|.++..++++. .+++++|+. ..++.+++ .++++++.+|+++ +++
T Consensus 37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~ 106 (271)
T 3fut_A 37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWE 106 (271)
T ss_dssp HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGG
T ss_pred HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChh
Confidence 34556555 5555 99999999999999999986 578999984 45555443 2689999999998 665
No 194
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=97.52 E-value=3.5e-05 Score=67.67 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=52.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----------CCCceEEeccCCCC--C-CCC-CEEE
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-----------CPGVEHVGGDMFVE--V-PKG-QAIF 264 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gD~f~~--~-P~~-D~~~ 264 (266)
...+|+|||||.|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|.++. . +.. |+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 568999999999999999999888899999999 457665532 36899999998762 2 334 8887
Q ss_pred e
Q 046424 265 M 265 (266)
Q Consensus 265 l 265 (266)
.
T Consensus 157 ~ 157 (314)
T 1uir_A 157 I 157 (314)
T ss_dssp E
T ss_pred E
Confidence 5
No 195
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=97.52 E-value=4.9e-05 Score=62.14 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=49.1
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC------CCceEEeccCCC--CCCC-C-CEEEe
Q 046424 202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC------PGVEHVGGDMFV--EVPK-G-QAIFM 265 (266)
Q Consensus 202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~--~~P~-~-D~~~l 265 (266)
..+|+|+|||+|.++..++++.. .+++.+|+. ..++.++.+ ++|+++.+|+.+ +.+. . |++++
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~ 128 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFV 128 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEE
Confidence 47999999999999999888764 379999994 577766542 589999999887 3333 3 88875
No 196
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=97.51 E-value=0.00029 Score=56.61 Aligned_cols=60 Identities=18% Similarity=0.129 Sum_probs=47.4
Q ss_pred HHHHccCCCCCceEEEecCCccHHHHHHHHHCCC---------CeEEEeechHHHhhCCCCCCceEE-eccCCC
Q 046424 192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ---------LRGINFDLPHVLKHAPSCPGVEHV-GGDMFV 255 (266)
Q Consensus 192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~---------l~~~v~Dlp~vi~~a~~~~ri~~~-~gD~f~ 255 (266)
+.+.+..+....+|||||||+|.++..+++++|. .+++++|+.+.. ..++++++ .+|+.+
T Consensus 13 l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~ 82 (196)
T 2nyu_A 13 VNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTD 82 (196)
T ss_dssp HHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTS
T ss_pred HHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCC
Confidence 3444442456689999999999999999999875 889999997631 23679999 999887
No 197
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=97.51 E-value=3.6e-05 Score=64.29 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=50.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCC-C-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPK-G-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~-~-D~~~l 265 (266)
...+|+|||||+|.++..+++.. .+++++|+ |..++.++.+ ++++++.+|+.+..+. . |++++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~ 150 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFL 150 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEE
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEE
Confidence 46899999999999999999985 78999999 4567666542 4899999999883343 3 98875
No 198
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=97.51 E-value=4.2e-05 Score=66.05 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=50.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCC----------------CCCCceEEeccCCCCC--CCC-
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAP----------------SCPGVEHVGGDMFVEV--PKG- 260 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~----------------~~~ri~~~~gD~f~~~--P~~- 260 (266)
...+|+|||||+|..+..+++. |..+++++|+ |.+++.++ ..+|++++.+|.++.+ +..
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 5689999999999999999998 9889999999 55766543 2368999999986522 344
Q ss_pred CEEEe
Q 046424 261 QAIFM 265 (266)
Q Consensus 261 D~~~l 265 (266)
|+|++
T Consensus 154 D~Ii~ 158 (281)
T 1mjf_A 154 DVIIA 158 (281)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 88874
No 199
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=97.50 E-value=3.5e-05 Score=64.34 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=49.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-----CCCceEEeccCCC---CCCCC--CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-----CPGVEHVGGDMFV---EVPKG--QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-----~~ri~~~~gD~f~---~~P~~--D~~~l 265 (266)
...+|||||||+|.++..+++..+. +++++|+. ..++.++. ..+++++.+|+.+ ++|.+ |+++.
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 134 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCC-eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEE
Confidence 4579999999999999999765554 88999994 56666543 2579999999876 46654 98875
No 200
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=97.50 E-value=8.9e-05 Score=67.01 Aligned_cols=74 Identities=16% Similarity=0.124 Sum_probs=56.9
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEEee
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ--------------------------------------LRGINFD 232 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--------------------------------------l~~~v~D 232 (266)
.++.... |.....|+|++||+|.++++++....+ .+++++|
T Consensus 186 ~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvD 264 (385)
T 3ldu_A 186 GLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYD 264 (385)
T ss_dssp HHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEE
T ss_pred HHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEE
Confidence 4455444 777789999999999999998876432 6799999
Q ss_pred c-hHHHhhCCCC-------CCceEEeccCCC-CCCCC-CEEEe
Q 046424 233 L-PHVLKHAPSC-------PGVEHVGGDMFV-EVPKG-QAIFM 265 (266)
Q Consensus 233 l-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~~-D~~~l 265 (266)
+ |.+++.|+.+ ++|++..+|+++ +.|.. |+++.
T Consensus 265 id~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~ 307 (385)
T 3ldu_A 265 IDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIIT 307 (385)
T ss_dssp SCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEE
Confidence 9 4578777652 479999999998 44444 98875
No 201
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=97.49 E-value=3e-05 Score=65.16 Aligned_cols=66 Identities=11% Similarity=0.107 Sum_probs=52.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCC---C------CCC-
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVE---V------PKG- 260 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~---~------P~~- 260 (266)
.+..+|+|||||+|..+..+++..| +.+++.+|+ |..++.++++ ++|+++.+|.++- + +..
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 3568999999999999999999988 789999999 5566665531 5899999998762 2 234
Q ss_pred CEEEe
Q 046424 261 QAIFM 265 (266)
Q Consensus 261 D~~~l 265 (266)
|++++
T Consensus 149 D~I~~ 153 (237)
T 3c3y_A 149 DFGFV 153 (237)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88875
No 202
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=97.48 E-value=4.9e-05 Score=63.27 Aligned_cols=63 Identities=11% Similarity=0.060 Sum_probs=49.9
Q ss_pred ceEEEecCCccHHHHHHHHHCC-CCeEEEeech-HHHhhCCC-------C-CCceEEeccCCC---CCC-CC-CEEEe
Q 046424 203 NQLVDVAGGLGANLKSIVSKYP-QLRGINFDLP-HVLKHAPS-------C-PGVEHVGGDMFV---EVP-KG-QAIFM 265 (266)
Q Consensus 203 ~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~a~~-------~-~ri~~~~gD~f~---~~P-~~-D~~~l 265 (266)
.+|+|||||+|..+..++++.| +.+++.+|+. ..++.++. . ++|+++.+|..+ .++ .. |++++
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 3999999999999999999986 8899999994 46665543 1 489999999876 242 34 99876
No 203
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.48 E-value=8.3e-05 Score=63.45 Aligned_cols=66 Identities=11% Similarity=0.161 Sum_probs=51.7
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----CCCceEEeccCCC-CCC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----CPGVEHVGGDMFV-EVP 258 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----~~ri~~~~gD~f~-~~P 258 (266)
..+++..+ .....+|+|||||+|.++..++++. .+++++|+. ..++.+++ .++++++.+|+++ +++
T Consensus 19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 19 QKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 34566665 5567899999999999999999985 579999994 46665543 3789999999998 554
No 204
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=97.47 E-value=0.00012 Score=61.84 Aligned_cols=64 Identities=11% Similarity=-0.005 Sum_probs=51.5
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-----CCCceEEeccCCCC-CCCC-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-----CPGVEHVGGDMFVE-VPKG-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-----~~ri~~~~gD~f~~-~P~~-D~~~l 265 (266)
+..+.+|+|||||.|-++..+. |..+.+..|+. ..++.++. ....++..+|+... .|.. |++++
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLl 174 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALI 174 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEE
T ss_pred CCCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHH
Confidence 3457899999999999999888 99999999995 46666554 26788999999994 5544 99854
No 205
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=97.46 E-value=0.00024 Score=65.06 Aligned_cols=74 Identities=11% Similarity=0.145 Sum_probs=53.7
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhC-------CC--------CCCceEEeccCC
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHA-------PS--------CPGVEHVGGDMF 254 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a-------~~--------~~ri~~~~gD~f 254 (266)
.+++.+. .....+|||||||+|.++..+++.+|..+++++|+.+ .++.| +. .++|+++.+|-+
T Consensus 233 ~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~ 311 (433)
T 1u2z_A 233 DVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF 311 (433)
T ss_dssp HHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence 3455555 5667899999999999999999999988999999954 44444 21 258999887544
Q ss_pred -CC--C---CC-CCEEEe
Q 046424 255 -VE--V---PK-GQAIFM 265 (266)
Q Consensus 255 -~~--~---P~-~D~~~l 265 (266)
.+ + .. .|+|++
T Consensus 312 ~~~~~~~~~~~~FDvIvv 329 (433)
T 1u2z_A 312 VDNNRVAELIPQCDVILV 329 (433)
T ss_dssp TTCHHHHHHGGGCSEEEE
T ss_pred ccccccccccCCCCEEEE
Confidence 32 2 12 398875
No 206
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=97.46 E-value=2.5e-05 Score=61.30 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=49.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----C-CceEEeccCCCCCC------CC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC----P-GVEHVGGDMFVEVP------KG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~-ri~~~~gD~f~~~P------~~-D~~~l 265 (266)
...+|+|+|||+|.++..++++.++ ++++|+ |..++.++.+ . +++++.+|+.+..| .. |++++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~ 116 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEE
Confidence 4579999999999999999999886 999999 5677766542 2 79999999887322 13 88765
No 207
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=97.46 E-value=0.00016 Score=65.31 Aligned_cols=74 Identities=15% Similarity=0.030 Sum_probs=56.9
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEEee
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ--------------------------------------LRGINFD 232 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--------------------------------------l~~~v~D 232 (266)
.++.... |.....|+|.+||+|.++++.+....+ .+++++|
T Consensus 185 all~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvD 263 (384)
T 3ldg_A 185 AIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFD 263 (384)
T ss_dssp HHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEE
T ss_pred HHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEE
Confidence 4455445 777899999999999999998876554 5699999
Q ss_pred ch-HHHhhCCCC-------CCceEEeccCCC-CCCCC-CEEEe
Q 046424 233 LP-HVLKHAPSC-------PGVEHVGGDMFV-EVPKG-QAIFM 265 (266)
Q Consensus 233 lp-~vi~~a~~~-------~ri~~~~gD~f~-~~P~~-D~~~l 265 (266)
+. .+++.++.+ ++|+++.+|+++ +.|.. |+++.
T Consensus 264 id~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~ 306 (384)
T 3ldg_A 264 FDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLIS 306 (384)
T ss_dssp SCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEE
Confidence 94 577766542 579999999998 44444 98875
No 208
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=97.45 E-value=4.3e-05 Score=67.21 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=52.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCCC--C-CCC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFVE--V-PKG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~~--~-P~~-D~~~l 265 (266)
+..+|+|||||+|..+..+++..|..+++++|+ |.+++.++. .+||+++.+|.++. . +.. |+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 568999999999999999999888999999999 567766542 26899999998763 2 234 88874
No 209
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=97.45 E-value=0.00048 Score=59.87 Aligned_cols=88 Identities=16% Similarity=0.058 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcchhhHHHHHHHcc-CCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--------
Q 046424 174 NNLFNQSMHNHTTIVMKEILEIYK-GFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-------- 243 (266)
Q Consensus 174 ~~~f~~~m~~~~~~~~~~i~~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------- 243 (266)
.+.|+.++...-. ..+++.+. ......+|+|||||+|.++..+++ .+..+++++|+. ..++.++..
T Consensus 9 lr~~~~~~k~~l~---~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~ 84 (313)
T 3bgv_A 9 LRNFNNWMKSVLI---GEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRR 84 (313)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHTC--CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSS
T ss_pred hhhccHHHHHHHH---HHHHHHhhhccCCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcc
Confidence 3566666665322 23333322 023568999999999999999988 467789999994 466555431
Q ss_pred -----CCceEEeccCCC-C----CC--C-C-CEEEe
Q 046424 244 -----PGVEHVGGDMFV-E----VP--K-G-QAIFM 265 (266)
Q Consensus 244 -----~ri~~~~gD~f~-~----~P--~-~-D~~~l 265 (266)
.+++++.+|+.+ + ++ . . |+++.
T Consensus 85 ~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~ 120 (313)
T 3bgv_A 85 DSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSC 120 (313)
T ss_dssp CC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEE
T ss_pred cccccceEEEEEecccccchhhhcccCCCCEEEEEE
Confidence 379999999987 3 42 2 3 88874
No 210
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=97.43 E-value=0.00015 Score=59.61 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=46.3
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEEeccCCC-CCCC-C-CEEEe
Q 046424 202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSCPGVEHVGGDMFV-EVPK-G-QAIFM 265 (266)
Q Consensus 202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gD~f~-~~P~-~-D~~~l 265 (266)
..+|+|||||+|.++..+++. +++|. |..++.++.. +++++.+|+.+ +++. . |+++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~ 108 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALM 108 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEE
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEE
Confidence 689999999999999988776 88998 5577766654 89999999877 5655 3 98875
No 211
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=97.41 E-value=0.00013 Score=59.46 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=48.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCC-eEEEeech-HHHhhCCCC-CCceEEeccCCC-CCCCC--CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQL-RGINFDLP-HVLKHAPSC-PGVEHVGGDMFV-EVPKG--QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l-~~~v~Dlp-~vi~~a~~~-~ri~~~~gD~f~-~~P~~--D~~~l 265 (266)
...+|+|||||+|.++..+ .. +++++|.. ..++.++.. ++++++.+|+.+ ++|.+ |++++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 101 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLL 101 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEE
Confidence 5689999999999999887 45 89999994 566665543 689999999987 66653 98875
No 212
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=97.41 E-value=4.9e-05 Score=64.94 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=54.9
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCCC-----CCceEEeccCCCCCCC-C-CEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPSC-----PGVEHVGGDMFVEVPK-G-QAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~~-----~ri~~~~gD~f~~~P~-~-D~~~l 265 (266)
..+.+|+|||||.|-++..+...+|+.+.+.+|+.+ .++.++.+ .+.++...|+..+.|. . |++++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~ 204 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLL 204 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEE
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHH
Confidence 358899999999999999999999999999999964 66665542 5688999999996555 3 99864
No 213
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=97.40 E-value=0.0001 Score=62.11 Aligned_cols=67 Identities=12% Similarity=0.275 Sum_probs=53.5
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----CCceEEeccCCC-CCCC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC----PGVEHVGGDMFV-EVPK 259 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~ri~~~~gD~f~-~~P~ 259 (266)
..+++.++ .....+|+|||||+|.++..++++. .+++++|+ |..++.++.+ ++++++.+|+.+ +++.
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~ 91 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCC
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCccc
Confidence 45566665 5567899999999999999999986 78999999 4577766653 579999999998 6653
No 214
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=97.39 E-value=0.00016 Score=59.98 Aligned_cols=67 Identities=16% Similarity=0.205 Sum_probs=52.4
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCC------CCeEEEeec-hHHHhhCCC-----------CCCceEEeccCCCCCCC-
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYP------QLRGINFDL-PHVLKHAPS-----------CPGVEHVGGDMFVEVPK- 259 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P------~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gD~f~~~P~- 259 (266)
.....+|+|||||+|.++..+++..+ ..+++.+|+ |..++.++. .++|+++.+|..+++|.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 34567999999999999999999766 378999998 456665543 25899999999887665
Q ss_pred C--CEEEe
Q 046424 260 G--QAIFM 265 (266)
Q Consensus 260 ~--D~~~l 265 (266)
+ |+++.
T Consensus 162 ~~fD~I~~ 169 (227)
T 1r18_A 162 APYNAIHV 169 (227)
T ss_dssp CSEEEEEE
T ss_pred CCccEEEE
Confidence 3 88864
No 215
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=97.38 E-value=6.3e-05 Score=61.44 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=48.0
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--------CCceEEeccCCCCCC-----C-CCEEEe
Q 046424 202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC--------PGVEHVGGDMFVEVP-----K-GQAIFM 265 (266)
Q Consensus 202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--------~ri~~~~gD~f~~~P-----~-~D~~~l 265 (266)
..+|||+|||+|.++..++++.+ .+++.+|+. ..++.++.+ ++++++.+|+++..+ . -|++++
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 47999999999999999887754 579999995 567666531 589999999876221 2 377765
No 216
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=97.38 E-value=0.00018 Score=60.91 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=48.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEEeccCCC-CCCCC--CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSCPGVEHVGGDMFV-EVPKG--QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gD~f~-~~P~~--D~~~l 265 (266)
...+|||||||+|.++..+++. ..+++++|+ |..++.++....-.++.+|+.+ ++|.+ |+++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 120 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLA 120 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEE
Confidence 5689999999999999999987 568999999 5577666542111388899987 66654 88875
No 217
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=97.37 E-value=4.4e-05 Score=63.85 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=50.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCC---CC-----CC-CE
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVE---VP-----KG-QA 262 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~---~P-----~~-D~ 262 (266)
+..+|||||||+|..+..+++..| +.+++.+|. |..++.++.+ ++|+++.+|..+. +| .. |+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 457999999999999999999988 789999999 4566665532 5799999997652 21 33 88
Q ss_pred EEe
Q 046424 263 IFM 265 (266)
Q Consensus 263 ~~l 265 (266)
+++
T Consensus 152 V~~ 154 (232)
T 3cbg_A 152 IFI 154 (232)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 218
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=97.34 E-value=0.00035 Score=59.86 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=47.5
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC--C------CceEE--eccCCC-CCCCC-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC--P------GVEHV--GGDMFV-EVPKG-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~--~------ri~~~--~gD~f~-~~P~~-D~~~l 265 (266)
+....+|||||||+|.++..++++ -+++.+|+-+.+..+.+. . +|+++ .+|+++ + +.. |+++.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~fD~V~s 146 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP-VERTDVIMC 146 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-CCCCSEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC-CCCCcEEEE
Confidence 456689999999999999998887 579999997753333221 2 68999 999987 3 333 98874
No 219
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=97.33 E-value=0.00023 Score=58.76 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=52.2
Q ss_pred CCCCceEEEecCCccHHHHHHHHHC-----CCCeEEEeec-hHHHhhCCC-----------CCCceEEeccCCCCC----
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKY-----PQLRGINFDL-PHVLKHAPS-----------CPGVEHVGGDMFVEV---- 257 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~-----P~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gD~f~~~---- 257 (266)
.....+|+|||||+|.++..+++.. |+.+++.+|. |..++.++. .++++++.+|..+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4456899999999999999999986 6889999999 456655543 257999999998854
Q ss_pred C-C-C-CEEEe
Q 046424 258 P-K-G-QAIFM 265 (266)
Q Consensus 258 P-~-~-D~~~l 265 (266)
+ . . |+++.
T Consensus 158 ~~~~~fD~I~~ 168 (227)
T 2pbf_A 158 KELGLFDAIHV 168 (227)
T ss_dssp HHHCCEEEEEE
T ss_pred ccCCCcCEEEE
Confidence 2 2 3 88864
No 220
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=97.32 E-value=0.00029 Score=64.56 Aligned_cols=71 Identities=14% Similarity=0.281 Sum_probs=53.9
Q ss_pred HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCC-----C
Q 046424 192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVP-----K 259 (266)
Q Consensus 192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P-----~ 259 (266)
+++.++ ..+..+|+|+|||+|.++..+++. ..+++++|+ |..++.|+.+ ++++++.+|+++.++ .
T Consensus 278 ~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~ 354 (433)
T 1uwv_A 278 ALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK 354 (433)
T ss_dssp HHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGT
T ss_pred HHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhc
Confidence 334444 445679999999999999999988 678999999 4577666532 589999999998433 2
Q ss_pred -C-CEEEe
Q 046424 260 -G-QAIFM 265 (266)
Q Consensus 260 -~-D~~~l 265 (266)
. |++++
T Consensus 355 ~~fD~Vv~ 362 (433)
T 1uwv_A 355 NGFDKVLL 362 (433)
T ss_dssp TCCSEEEE
T ss_pred CCCCEEEE
Confidence 3 98875
No 221
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=97.32 E-value=0.00026 Score=60.97 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=49.3
Q ss_pred CCceEEEecCCccH----HHHHHHHHCC----CCeEEEeech-HHHhhCCCC----------------------------
Q 046424 201 GLNQLVDVAGGLGA----NLKSIVSKYP----QLRGINFDLP-HVLKHAPSC---------------------------- 243 (266)
Q Consensus 201 ~~~~vvDVGGG~G~----~~~~l~~~~P----~l~~~v~Dlp-~vi~~a~~~---------------------------- 243 (266)
+..+|+|+|||+|. .++.+++..| +.+++..|+. .+++.|+..
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 34789999999999 6666777766 4689999994 477665421
Q ss_pred ---------CCceEEeccCCC-CCC--CC-CEEEe
Q 046424 244 ---------PGVEHVGGDMFV-EVP--KG-QAIFM 265 (266)
Q Consensus 244 ---------~ri~~~~gD~f~-~~P--~~-D~~~l 265 (266)
.+|+|..+|+++ ++| .. |+|+.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~c 219 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFC 219 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEE
Confidence 369999999999 576 34 99874
No 222
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=97.25 E-value=0.00038 Score=60.46 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=54.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----------CCCceEEeccCCCC--CCC-C-CEE
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-----------CPGVEHVGGDMFVE--VPK-G-QAI 263 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gD~f~~--~P~-~-D~~ 263 (266)
.++++|+=||||.|..++++++..|..+++++|+ |.|++.++. .+|++++.+|-++- ... . |+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 3789999999999999999999888889999999 568876543 38999999999983 333 4 988
Q ss_pred Ee
Q 046424 264 FM 265 (266)
Q Consensus 264 ~l 265 (266)
++
T Consensus 162 i~ 163 (294)
T 3o4f_A 162 IS 163 (294)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 223
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=97.25 E-value=0.00029 Score=58.09 Aligned_cols=66 Identities=18% Similarity=0.146 Sum_probs=51.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC-----------CCCceEEeccCCCCCC-C-C-CEE
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPS-----------CPGVEHVGGDMFVEVP-K-G-QAI 263 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gD~f~~~P-~-~-D~~ 263 (266)
....+|+|||||+|..+..+++.. |+.+++.+|+ |..++.++. .++|+++.+|.....+ . . |++
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i 155 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI 155 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEE
Confidence 456899999999999999999985 7789999999 556665542 2479999999986433 2 3 887
Q ss_pred Ee
Q 046424 264 FM 265 (266)
Q Consensus 264 ~l 265 (266)
+.
T Consensus 156 ~~ 157 (226)
T 1i1n_A 156 HV 157 (226)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 224
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=97.25 E-value=0.00027 Score=60.13 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=49.5
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----CCceEEeccCCC-CCC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC----PGVEHVGGDMFV-EVP 258 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~ri~~~~gD~f~-~~P 258 (266)
..+++..+ .....+|+|||||+|.++. + ++.+..+++++|+ |..++.+++. ++++++.+|+.+ ++|
T Consensus 11 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l-~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~ 82 (252)
T 1qyr_A 11 DSIVSAIN-PQKGQAMVEIGPGLAALTE-P-VGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG 82 (252)
T ss_dssp HHHHHHHC-CCTTCCEEEECCTTTTTHH-H-HHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred HHHHHhcC-CCCcCEEEEECCCCcHHHH-h-hhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHH
Confidence 45566655 5566899999999999999 5 4555555999999 4577766543 589999999987 543
No 225
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.23 E-value=0.00019 Score=53.24 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=55.6
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhC--CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccCCC
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQL--PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~--~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~~~ 119 (266)
+..|++.|.+.| ++|+.+||+.+ ++ ++..+++-|+.|...|+|+.. + .+.|++|+.+..++...
T Consensus 15 d~~IL~~L~~~g--~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~---~-----rg~Y~LT~~G~~~l~~~ 80 (111)
T 3b73_A 15 DDRILEIIHEEG--NGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL---A-----NGVYVITEEGEAYLNGE 80 (111)
T ss_dssp HHHHHHHHHHHS--CBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC---S-----TTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec---C-----CceEEECchHHHHHHHH
Confidence 456888998766 99999999999 99 999999999999999999975 1 45899999998777653
No 226
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=97.23 E-value=0.00035 Score=60.21 Aligned_cols=63 Identities=11% Similarity=-0.029 Sum_probs=47.4
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC--C------CceEE--eccCCCCCC-CC-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC--P------GVEHV--GGDMFVEVP-KG-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~--~------ri~~~--~gD~f~~~P-~~-D~~~l 265 (266)
+....+|||||||+|.++..++++ -+++.+|+.+....+++. . +|+++ .+|+.+ +| .. |+++.
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~Vvs 154 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTK-MEPFQADTVLC 154 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGG-CCCCCCSEEEE
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhh-CCCCCcCEEEE
Confidence 455689999999999999999888 579999997753333221 2 68999 999886 33 33 98874
No 227
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=97.19 E-value=0.00038 Score=59.52 Aligned_cols=50 Identities=4% Similarity=0.019 Sum_probs=38.8
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS 242 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~ 242 (266)
..+++.++ .....+|+|||||+|.++..++++ ..+++++|+. ..++.+++
T Consensus 35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~ 85 (261)
T 3iv6_A 35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAE 85 (261)
T ss_dssp HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHH
Confidence 34555555 556789999999999999999987 4589999994 47776654
No 228
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=97.13 E-value=0.00036 Score=60.19 Aligned_cols=66 Identities=17% Similarity=0.085 Sum_probs=51.4
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCCCCC--CCEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVEVPK--GQAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~P~--~D~~~l 265 (266)
++...+|||+|||+|.+++.++++ ...+++.+|+ |..++.++. .++|+++.+|.++-.+. .|.++|
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~ 198 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILM 198 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEE
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEE
Confidence 346789999999999999999887 4568999999 456666553 27899999999884333 388776
No 229
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=97.11 E-value=0.00049 Score=62.05 Aligned_cols=63 Identities=11% Similarity=0.050 Sum_probs=50.2
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCCC-CC-CC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFVE-VP-KG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~~-~P-~~-D~~~l 265 (266)
...+|+|+|||+|.++..+++. +.+++.+|. |..++.++.+ -.++++.+|+++. .+ .. |+|++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~ 304 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVT 304 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEE
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEE
Confidence 4579999999999999999998 568999998 5577766542 3599999999994 44 24 99885
No 230
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=97.10 E-value=0.00058 Score=65.35 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=61.0
Q ss_pred chhccccChhHHHHHHHHHHhcchhhHHHHHHHccC---CCCCceEEEecCCccHHHHHHH---HH-CCCCeEEEeechH
Q 046424 163 GFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKG---FEGLNQLVDVAGGLGANLKSIV---SK-YPQLRGINFDLPH 235 (266)
Q Consensus 163 ~~~~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~~~~---~~~~~~vvDVGGG~G~~~~~l~---~~-~P~l~~~v~Dlp~ 235 (266)
.||.++++|-.-..|.+|+.. ++.+..+. -.+...|+|||+|+|-+....+ ++ .-++++..++-.+
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 456666777555566655443 22222210 2245789999999999844333 33 2234678888766
Q ss_pred HHhhCCC-------CCCceEEeccCCC-CCCCC-CEEE
Q 046424 236 VLKHAPS-------CPGVEHVGGDMFV-EVPKG-QAIF 264 (266)
Q Consensus 236 vi~~a~~-------~~ri~~~~gD~f~-~~P~~-D~~~ 264 (266)
....++. .++|+++.||+-+ ..|+. |+++
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIV 433 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIV 433 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEE
Confidence 5554433 2799999999999 89987 9985
No 231
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=97.10 E-value=0.00044 Score=60.58 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=53.7
Q ss_pred HHccCCCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeech-HHHhhCCCC------CCceEEeccCCC-C-CCCC-CE
Q 046424 194 EIYKGFEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLP-HVLKHAPSC------PGVEHVGGDMFV-E-VPKG-QA 262 (266)
Q Consensus 194 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~-~-~P~~-D~ 262 (266)
..++ .....+|+|+|||+|..+..+++..+ ..+++.+|+. ..++.++.+ ++|+++.+|+.+ + .+.. |+
T Consensus 112 ~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~ 190 (315)
T 1ixk_A 112 VALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 190 (315)
T ss_dssp HHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCE
Confidence 3344 55668999999999999999999975 5889999995 456555432 579999999987 3 2334 88
Q ss_pred EEe
Q 046424 263 IFM 265 (266)
Q Consensus 263 ~~l 265 (266)
+++
T Consensus 191 Il~ 193 (315)
T 1ixk_A 191 ILL 193 (315)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 232
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=97.04 E-value=0.00068 Score=59.23 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=46.7
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-----hHHHhhCC--CC--CCceEEec-cCCCCCCCC-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-----PHVLKHAP--SC--PGVEHVGG-DMFVEVPKG-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-----p~vi~~a~--~~--~ri~~~~g-D~f~~~P~~-D~~~l 265 (266)
+....+|||||||+|.++..++++ -+++.+|+ +..++.+. .. ++|+++.+ |+++.-+.. |+++.
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~s 154 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLC 154 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEE
Confidence 445689999999999999999988 37889998 53333222 12 57999999 998732333 98874
No 233
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=96.99 E-value=0.0003 Score=60.03 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=49.0
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH--------HHhhCCCC-------CCceEEeccCCCC---CC--
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH--------VLKHAPSC-------PGVEHVGGDMFVE---VP-- 258 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~--------vi~~a~~~-------~ri~~~~gD~f~~---~P-- 258 (266)
.....+|+|+|||+|.++..+++. ..+++.+|+.+ .++.++.+ .||+++.+|..+- ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 334579999999999999999986 56899999965 33434322 5799999998872 44
Q ss_pred -CC-CEEEe
Q 046424 259 -KG-QAIFM 265 (266)
Q Consensus 259 -~~-D~~~l 265 (266)
.. |++++
T Consensus 159 ~~~fD~V~~ 167 (258)
T 2r6z_A 159 QGKPDIVYL 167 (258)
T ss_dssp HCCCSEEEE
T ss_pred CCCccEEEE
Confidence 33 98876
No 234
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.97 E-value=0.00041 Score=46.52 Aligned_cols=55 Identities=9% Similarity=0.197 Sum_probs=45.9
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLT 109 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t 109 (266)
+..|+++|.+.+ .++|..|||+.+|+ +...+.+.+..|...|++.... .+.|+++
T Consensus 12 ~~~IL~~L~~~~-~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~~--------~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDG-GPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSPS--------PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHC-SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEEE--------TTEEEEC
T ss_pred HHHHHHHHHHcC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecCC--------CceEeeC
Confidence 456888997653 28999999999999 9999999999999999987652 5678764
No 235
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=96.95 E-value=0.00075 Score=58.07 Aligned_cols=55 Identities=31% Similarity=0.439 Sum_probs=44.0
Q ss_pred CCceEEEecCCc--cHHHHHH-HHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCC
Q 046424 201 GLNQLVDVAGGL--GANLKSI-VSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFV 255 (266)
Q Consensus 201 ~~~~vvDVGGG~--G~~~~~l-~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~ 255 (266)
+..+|||||||. +.+..++ .+.+|+.+++.+|. |.+++.++.. .+++++.+|+.+
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~ 142 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLD 142 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccC
Confidence 678999999997 3344554 45689999999999 7799887642 379999999987
No 236
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=96.95 E-value=0.0004 Score=62.89 Aligned_cols=63 Identities=11% Similarity=0.135 Sum_probs=47.6
Q ss_pred CCceEEEecCC------ccHHHHHHHHH-CCCCeEEEeechHHHhhCCCCCCceEEeccCCC-CCC-------CC-CEEE
Q 046424 201 GLNQLVDVAGG------LGANLKSIVSK-YPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFV-EVP-------KG-QAIF 264 (266)
Q Consensus 201 ~~~~vvDVGGG------~G~~~~~l~~~-~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~-~~P-------~~-D~~~ 264 (266)
+..+||||||| +|..+..++++ +|+.+++++|+.+... ...++|+++.+|+.+ +++ .. |+|+
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVi 293 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--VDELRIRTIQGDQNDAEFLDRIARRYGPFDIVI 293 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--hcCCCcEEEEecccccchhhhhhcccCCccEEE
Confidence 46899999999 66666666654 6999999999965432 234799999999988 555 33 8886
Q ss_pred e
Q 046424 265 M 265 (266)
Q Consensus 265 l 265 (266)
.
T Consensus 294 s 294 (419)
T 3sso_A 294 D 294 (419)
T ss_dssp E
T ss_pred E
Confidence 4
No 237
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.94 E-value=0.00049 Score=47.75 Aligned_cols=62 Identities=10% Similarity=0.044 Sum_probs=52.1
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcc-hHHHHHHHHhcCCccccccccCCCCccccceecchhccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPI-ILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKY 114 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~-~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~ 114 (266)
.+-.|++.|...| +.|+.+||+.+|+ +.. .+++.|..|...|+|+... .| ...|++|+.+..
T Consensus 12 ~~~~IL~~Lk~~g--~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~----~g--RP~w~LT~~g~~ 74 (79)
T 1xmk_A 12 IKEKICDYLFNVS--DSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQG----TT--PPIWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHHHHHTC--CEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEEC----SS--SCEEEECHHHHT
T ss_pred HHHHHHHHHHHcC--CcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecC----CC--CCCeEeCHhHHh
Confidence 3556788898887 9999999999999 998 9999999999999998651 23 348999988764
No 238
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=96.89 E-value=0.0024 Score=53.50 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=54.4
Q ss_pred HHHHHccC--CCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeechH-H----HhhCCCCCCceEEeccCCCC-----C
Q 046424 191 EILEIYKG--FEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDLPH-V----LKHAPSCPGVEHVGGDMFVE-----V 257 (266)
Q Consensus 191 ~i~~~~~~--~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dlp~-v----i~~a~~~~ri~~~~gD~f~~-----~ 257 (266)
.++..++. ++...+|+|||||+|.++..+++. .|+-+++.+|+.+ . ++.++...+|+++.+|...+ +
T Consensus 64 ~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~ 143 (232)
T 3id6_C 64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSV 143 (232)
T ss_dssp HHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTT
T ss_pred HHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhcc
Confidence 34444431 456789999999999999999987 5788999999954 2 33444447899999998763 2
Q ss_pred CCC-CEEEe
Q 046424 258 PKG-QAIFM 265 (266)
Q Consensus 258 P~~-D~~~l 265 (266)
+.. |+++.
T Consensus 144 ~~~~D~I~~ 152 (232)
T 3id6_C 144 VENVDVLYV 152 (232)
T ss_dssp CCCEEEEEE
T ss_pred ccceEEEEe
Confidence 233 88874
No 239
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=96.87 E-value=0.00064 Score=60.17 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=51.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCC-----CeEEEeec-hHHHhhCCCC-----CCceEEeccCCCCCCC-C-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQ-----LRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFVEVPK-G-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~-----l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~~~P~-~-D~~~l 265 (266)
...+|+|+|||+|.++..+++..|. .+++++|+ |..++.++.+ -+++++.+|.+++.+. . |+++.
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS 207 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEE
Confidence 4579999999999999999999875 67899999 4566655432 3689999999986553 3 88764
No 240
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=96.86 E-value=0.0015 Score=59.65 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=49.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC------CCceEEeccCCCCCCCC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC------PGVEHVGGDMFVEVPKG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~~~P~~-D~~~l 265 (266)
+..+|+|+|||+|.++..+++. ..+++.+|+. ..++.++.+ + ++++.+|+++..+.. |++++
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~ 359 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIV 359 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEE
T ss_pred CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEE
Confidence 5689999999999999999987 4589999994 577766542 4 999999999855544 88875
No 241
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=96.84 E-value=0.0004 Score=61.99 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=50.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC--------------CCceEEeccCCCCC------CC
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC--------------PGVEHVGGDMFVEV------PK 259 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~--------------~ri~~~~gD~f~~~------P~ 259 (266)
++.+|+|||||.|..+.++++..| .+++++|+ |.|++.++++ +|++++.+|.++-+ +.
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~ 266 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 266 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCC
Confidence 678999999999999999998866 78999999 5677766431 27999999998732 23
Q ss_pred C-CEEEe
Q 046424 260 G-QAIFM 265 (266)
Q Consensus 260 ~-D~~~l 265 (266)
. |+|++
T Consensus 267 ~fDvII~ 273 (364)
T 2qfm_A 267 EFDYVIN 273 (364)
T ss_dssp CEEEEEE
T ss_pred CceEEEE
Confidence 3 88875
No 242
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=96.84 E-value=0.00067 Score=58.10 Aligned_cols=67 Identities=10% Similarity=0.047 Sum_probs=51.8
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeech-HHHhhCCC------CCCceEEeccCCC-CC-----CCC-CEE
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV-EV-----PKG-QAI 263 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~-~~-----P~~-D~~ 263 (266)
.....+|+|+|||+|..+..+++..++ .+++.+|+. ..++.++. .++|+++.+|+.+ +. +.. |++
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 445689999999999999999999887 889999995 45555443 2589999999876 22 334 887
Q ss_pred Ee
Q 046424 264 FM 265 (266)
Q Consensus 264 ~l 265 (266)
++
T Consensus 161 l~ 162 (274)
T 3ajd_A 161 LL 162 (274)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 243
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.82 E-value=0.00097 Score=47.70 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=50.9
Q ss_pred HHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424 36 TIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK 113 (266)
Q Consensus 36 ~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~ 113 (266)
++..-.++.|+..| . + +.++.|||+.+++ +...+.+.|+.|...|++... .+.|++++.+.
T Consensus 27 ~l~~~~r~~Il~~L-~-~--~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~---------~g~y~l~~~g~ 87 (96)
T 1y0u_A 27 AVTNPVRRKILRML-D-K--GRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV---------GERWVVTDAGK 87 (96)
T ss_dssp HHSCHHHHHHHHHH-H-T--TCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECTTTC
T ss_pred HhCCHHHHHHHHHH-c-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---------CCEEEECCCch
Confidence 34444667788889 5 4 8999999999999 999999999999999999976 24899988654
No 244
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=96.82 E-value=0.0034 Score=52.63 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=50.3
Q ss_pred HHHHHccC--CCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeech-HHHhh----CCCCCCceEEeccCCC
Q 046424 191 EILEIYKG--FEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDLP-HVLKH----APSCPGVEHVGGDMFV 255 (266)
Q Consensus 191 ~i~~~~~~--~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dlp-~vi~~----a~~~~ri~~~~gD~f~ 255 (266)
.++..++. .+...+|+|+|||+|.++..+++. -|+=+++.+|.. +.++. ++..+.|..+.+|.-.
T Consensus 65 ~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~ 137 (233)
T 4df3_A 65 ALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARF 137 (233)
T ss_dssp HHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTC
T ss_pred HHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccC
Confidence 44554442 567799999999999999999998 598899999994 45544 4445789999888876
No 245
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=96.82 E-value=0.0019 Score=55.37 Aligned_cols=64 Identities=14% Similarity=0.131 Sum_probs=45.0
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHhhCCC---------C-------CCceEEeccCCC---CC--
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL--PHVLKHAPS---------C-------PGVEHVGGDMFV---EV-- 257 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl--p~vi~~a~~---------~-------~ri~~~~gD~f~---~~-- 257 (266)
...+|+|||||+|.++..+++.. ..+++++|+ |..++.++. . ++|++...|.-+ ++
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 45799999999999999888763 348999999 566665432 1 378888665543 22
Q ss_pred ---CCC-CEEEe
Q 046424 258 ---PKG-QAIFM 265 (266)
Q Consensus 258 ---P~~-D~~~l 265 (266)
+.. |++++
T Consensus 158 ~~~~~~fD~Ii~ 169 (281)
T 3bzb_A 158 CTGLQRFQVVLL 169 (281)
T ss_dssp HHSCSSBSEEEE
T ss_pred hccCCCCCEEEE
Confidence 233 88874
No 246
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=96.80 E-value=0.00086 Score=59.28 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=49.7
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCCC-CEEEe
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPKG-QAIFM 265 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~~-D~~~l 265 (266)
....+|+|+|||+|.++.. ++ ...+++.+|+ |..++.++.+ ++++++.+|.++.. .. |++++
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-~~fD~Vi~ 264 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-VKGNRVIM 264 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-CCEEEEEE
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-CCCcEEEE
Confidence 3568999999999999999 76 5778999999 5677766542 58999999999854 43 88876
No 247
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=96.78 E-value=0.00034 Score=58.78 Aligned_cols=40 Identities=15% Similarity=-0.034 Sum_probs=32.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCC
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAP 241 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~ 241 (266)
...+|||||||+|.++..+++..+ .+++++|+. ..++.++
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~ 96 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQ 96 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHH
Confidence 458999999999999999998877 678999994 4566553
No 248
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=96.74 E-value=0.0021 Score=59.08 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=54.6
Q ss_pred HHHccCCCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeechH-HHhhCCC------CCCceEEeccCCC-C--CC-CC
Q 046424 193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDLPH-VLKHAPS------CPGVEHVGGDMFV-E--VP-KG 260 (266)
Q Consensus 193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dlp~-vi~~a~~------~~ri~~~~gD~f~-~--~P-~~ 260 (266)
...++ .....+|+|+|||.|..+..+++..++ .+++.+|+.+ .++.++. .++|+++.+|+.+ + ++ ..
T Consensus 252 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 330 (450)
T 2yxl_A 252 SIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEV 330 (450)
T ss_dssp HHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSC
T ss_pred HHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCC
Confidence 33344 555689999999999999999999987 8899999954 4554432 2579999999987 3 55 33
Q ss_pred -CEEEe
Q 046424 261 -QAIFM 265 (266)
Q Consensus 261 -D~~~l 265 (266)
|++++
T Consensus 331 fD~Vl~ 336 (450)
T 2yxl_A 331 ADKVLL 336 (450)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 98875
No 249
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=96.70 E-value=0.00065 Score=60.05 Aligned_cols=63 Identities=10% Similarity=0.050 Sum_probs=49.3
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------C-CceEEeccCCCCC------CCC-CEEE
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------P-GVEHVGGDMFVEV------PKG-QAIF 264 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~-ri~~~~gD~f~~~------P~~-D~~~ 264 (266)
...+|||+|||+|.++..+++... +++.+|+ |..++.++.+ + +++++.+|+++.. ... |+++
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 457999999999999999999754 8999999 4577666542 2 5999999998732 233 9887
Q ss_pred e
Q 046424 265 M 265 (266)
Q Consensus 265 l 265 (266)
+
T Consensus 231 ~ 231 (332)
T 2igt_A 231 T 231 (332)
T ss_dssp E
T ss_pred E
Confidence 6
No 250
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=96.66 E-value=0.0013 Score=55.99 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=52.0
Q ss_pred HHHHHccCCCCC--ceEEEecCCccHHHHHHHHHCCCCeEEEeechHH--------HhhCC----C---C-CCceEEecc
Q 046424 191 EILEIYKGFEGL--NQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHV--------LKHAP----S---C-PGVEHVGGD 252 (266)
Q Consensus 191 ~i~~~~~~~~~~--~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~v--------i~~a~----~---~-~ri~~~~gD 252 (266)
.+.+.+. .+.. .+|+|+|||.|..+..++++ ..+++.+|..+. ++.++ . . .||+++.+|
T Consensus 77 ~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D 153 (258)
T 2oyr_A 77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (258)
T ss_dssp HHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence 3444443 4444 79999999999999999998 568999999763 32221 1 1 479999999
Q ss_pred CCC---CCCCC-CEEEe
Q 046424 253 MFV---EVPKG-QAIFM 265 (266)
Q Consensus 253 ~f~---~~P~~-D~~~l 265 (266)
.++ .++.. |++++
T Consensus 154 ~~~~L~~~~~~fDvV~l 170 (258)
T 2oyr_A 154 SLTALTDITPRPQVVYL 170 (258)
T ss_dssp HHHHSTTCSSCCSEEEE
T ss_pred HHHHHHhCcccCCEEEE
Confidence 876 34444 99886
No 251
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=96.64 E-value=0.00085 Score=63.61 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=47.6
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----C--CCceEEeccCCC---CCCC-C-CEEE
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----C--PGVEHVGGDMFV---EVPK-G-QAIF 264 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----~--~ri~~~~gD~f~---~~P~-~-D~~~ 264 (266)
.+..+|||||||.|.++..+++. ..+++++|+. ..|+.|+. . -.|++..+|.-+ +.+. . |+|+
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~ 139 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAI 139 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEE
Confidence 35679999999999999999998 6689999995 46776553 2 258888887754 3333 3 8885
No 252
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=96.50 E-value=0.0027 Score=61.69 Aligned_cols=75 Identities=16% Similarity=0.057 Sum_probs=55.9
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHH------------------------------------------CCCCe
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSK------------------------------------------YPQLR 227 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~------------------------------------------~P~l~ 227 (266)
..++.... |.....|+|.+||+|.++++.+.. .|+.+
T Consensus 180 a~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~ 258 (703)
T 3v97_A 180 AAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSH 258 (703)
T ss_dssp HHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCcc
Confidence 34555555 777789999999999999998765 34568
Q ss_pred EEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCC--C-C-CEEEe
Q 046424 228 GINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVP--K-G-QAIFM 265 (266)
Q Consensus 228 ~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P--~-~-D~~~l 265 (266)
++++|+ |.+++.|+.+ ++|++..+|+++ ..| . . |+++.
T Consensus 259 i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~ 309 (703)
T 3v97_A 259 FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLS 309 (703)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEe
Confidence 999999 5577776642 469999999987 333 2 3 88764
No 253
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=96.38 E-value=0.0013 Score=59.73 Aligned_cols=63 Identities=25% Similarity=0.370 Sum_probs=48.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--------CCceEEeccCCCCCC----CC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC--------PGVEHVGGDMFVEVP----KG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--------~ri~~~~gD~f~~~P----~~-D~~~l 265 (266)
...+|+|+|||+|..+..+++.. .+++.+|+. ..++.++.+ ++|+++.+|+++.++ .. |++++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 35899999999999999988874 589999995 455555431 579999999997422 23 99886
No 254
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=96.31 E-value=0.0032 Score=60.61 Aligned_cols=95 Identities=9% Similarity=0.057 Sum_probs=57.3
Q ss_pred chhccccChhHHHHHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHH----C---------CCCeEE
Q 046424 163 GFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSK----Y---------PQLRGI 229 (266)
Q Consensus 163 ~~~~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~----~---------P~l~~~ 229 (266)
.||.+.+++-.-..|.+++... +.+..++-.+...|+|||||+|.+....+++ . ...+++
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy 450 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY 450 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred HHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence 4555666665555565555441 1222211123578999999999996543222 2 345788
Q ss_pred EeechH-HHhhCC-----C-CCCceEEeccCCC-CC------CCC-CEEE
Q 046424 230 NFDLPH-VLKHAP-----S-CPGVEHVGGDMFV-EV------PKG-QAIF 264 (266)
Q Consensus 230 v~Dlp~-vi~~a~-----~-~~ri~~~~gD~f~-~~------P~~-D~~~ 264 (266)
.+|-.. .+...+ . .++|+++.+|+-+ .. |.. |+++
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIV 500 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIV 500 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEE
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEE
Confidence 888854 222211 1 2789999999998 66 554 9885
No 255
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=96.29 E-value=0.0063 Score=52.34 Aligned_cols=64 Identities=22% Similarity=0.291 Sum_probs=51.1
Q ss_pred HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC--CCCceEEeccCCC
Q 046424 189 MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS--CPGVEHVGGDMFV 255 (266)
Q Consensus 189 ~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~--~~ri~~~~gD~f~ 255 (266)
...+++.+. ......+||++||.|..+..|+++ +.+.+++|.. ..++.+++ .+|++++.+||-+
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 356677776 666789999999999999999998 7899999995 46654432 1699999999976
No 256
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.28 E-value=0.0027 Score=47.58 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=49.5
Q ss_pred HHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424 35 MTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP 110 (266)
Q Consensus 35 ~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~ 110 (266)
.+|.--.++.|+..|...+ +.|+.|||+.+|+ +...+.+.|+.|...|++...+ +|+ ...|++++
T Consensus 37 ~al~~~~rl~IL~~L~~~~--~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~~----~gr-~~~y~l~~ 101 (122)
T 1u2w_A 37 KAIADENRAKITYALCQDE--ELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRK----EGK-LALYSLGD 101 (122)
T ss_dssp HHHHSHHHHHHHHHHHHSS--CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---------CCEEEESC
T ss_pred HHhCCHHHHHHHHHHHHCC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE----ECC-EEEEEECH
Confidence 3444445678888897655 8999999999999 9999999999999999998762 121 23577765
No 257
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.27 E-value=0.0039 Score=43.36 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=48.9
Q ss_pred HHhhChhHHHhhcCC-CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 40 ATELGLLEIMAKASP-TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 40 a~~lglfd~L~~~g~-~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
-.+..|++.|.+.++ .++|+.+||+++|+ +...+.+.|.-|...|++.... +. .+.|.+.+....+.
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~g-----~~-~~~W~i~~~~~~~~ 77 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-----GT-PPLWKIAVSTQAWN 77 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES-----SS-SCEEEEC-------
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-----CC-CCeeEEeCcHHhcc
Confidence 346668888887742 26999999999999 9999999999999999998752 11 57888887655433
No 258
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=96.26 E-value=0.0035 Score=57.48 Aligned_cols=73 Identities=18% Similarity=0.069 Sum_probs=52.2
Q ss_pred HHHHccCCCCCceEEEecCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHhhCCCC------C--CceEE
Q 046424 192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-------------PQLRGINFDL-PHVLKHAPSC------P--GVEHV 249 (266)
Q Consensus 192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-------------P~l~~~v~Dl-p~vi~~a~~~------~--ri~~~ 249 (266)
+++.+. .....+|+|.|||+|.++..+++.. +..+++++|+ |..++.++.+ . .+++.
T Consensus 163 mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~ 241 (445)
T 2okc_A 163 MVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIV 241 (445)
T ss_dssp HHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEE
T ss_pred HHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEe
Confidence 344443 3345799999999999999988764 5578999999 4566555431 2 67899
Q ss_pred eccCCC-CCCCC-CEEEe
Q 046424 250 GGDMFV-EVPKG-QAIFM 265 (266)
Q Consensus 250 ~gD~f~-~~P~~-D~~~l 265 (266)
.+|.+. +.... |+++.
T Consensus 242 ~gD~l~~~~~~~fD~Iv~ 259 (445)
T 2okc_A 242 CEDSLEKEPSTLVDVILA 259 (445)
T ss_dssp ECCTTTSCCSSCEEEEEE
T ss_pred eCCCCCCcccCCcCEEEE
Confidence 999998 34334 88864
No 259
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.26 E-value=0.0063 Score=46.17 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=47.1
Q ss_pred HHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 40 ATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
..++.|+..|...| ++|..+||+.+++ ++..+.++++-|...|+|+... ...|++ .-.+.+|+.|..+.
T Consensus 37 ~~~~~vL~~l~~~~--~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~-~~~DrR-~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 37 PPDVHVLKLIDEQR--GLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRER-NPSDQR-SFQLFLTDEGLAIH 105 (142)
T ss_dssp HHHHHHHHHHHHTT--TCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC------------CCEECHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeecc-CCCCCC-eeeeEECHHHHHHH
Confidence 46667888998876 8999999999999 9999999999999999999762 111111 22366776665444
No 260
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=96.26 E-value=0.0032 Score=54.75 Aligned_cols=51 Identities=10% Similarity=0.079 Sum_probs=37.8
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-----C-------CceEEeccC
Q 046424 202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-----P-------GVEHVGGDM 253 (266)
Q Consensus 202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-----~-------ri~~~~gD~ 253 (266)
..+|||||||+|..+..+++.. ..+++++|+. ..++.|+.. . ++++...|+
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~ 112 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETI 112 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCT
T ss_pred CCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhc
Confidence 5799999999998777766543 4579999995 477776642 1 256778877
No 261
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=96.24 E-value=0.0049 Score=56.18 Aligned_cols=72 Identities=13% Similarity=0.157 Sum_probs=53.7
Q ss_pred HHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-----CCceEEeccCCCC---CCC-C-C
Q 046424 193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-----PGVEHVGGDMFVE---VPK-G-Q 261 (266)
Q Consensus 193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-----~ri~~~~gD~f~~---~P~-~-D 261 (266)
...++ .....+|+|+|||.|..+..+++..|+.+++.+|+. ..++.++.+ -+++++.+|+.+. ++. . |
T Consensus 239 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD 317 (429)
T 1sqg_A 239 MTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFD 317 (429)
T ss_dssp HHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEE
T ss_pred HHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCC
Confidence 33344 445679999999999999999999999899999994 345444321 2589999999873 443 3 8
Q ss_pred EEEe
Q 046424 262 AIFM 265 (266)
Q Consensus 262 ~~~l 265 (266)
++++
T Consensus 318 ~Vl~ 321 (429)
T 1sqg_A 318 RILL 321 (429)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 262
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.24 E-value=0.0022 Score=45.88 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=49.6
Q ss_pred HHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424 36 TIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP 110 (266)
Q Consensus 36 ~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~ 110 (266)
+|.--.++.|+..|.+ | +.|+.|||+.+|+ +...+.+.|+.|...|+++... +|+ .-.|++++
T Consensus 19 ~l~~~~r~~Il~~L~~-~--~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~----~g~-~~~y~l~~ 81 (98)
T 3jth_A 19 AMANERRLQILCMLHN-Q--ELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTRK----EAQ-TVYYTLKS 81 (98)
T ss_dssp HHCSHHHHHHHHHTTT-S--CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----CTT-CCEEEECC
T ss_pred HcCCHHHHHHHHHHhc-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE----eCC-EEEEEECH
Confidence 3444466778888877 5 8999999999999 9999999999999999999762 221 34476665
No 263
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=96.24 E-value=0.001 Score=59.99 Aligned_cols=65 Identities=11% Similarity=-0.018 Sum_probs=49.4
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------C--CceEEeccCCCCCC------CC-CEE
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------P--GVEHVGGDMFVEVP------KG-QAI 263 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~--ri~~~~gD~f~~~P------~~-D~~ 263 (266)
....+|+|+|||+|.++..+++.. .-+++.+|+ |..++.++.+ + +++++.+|.++.++ .. |++
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 355899999999999999999863 237999999 4577665542 3 89999999987322 23 888
Q ss_pred Ee
Q 046424 264 FM 265 (266)
Q Consensus 264 ~l 265 (266)
++
T Consensus 290 i~ 291 (385)
T 2b78_A 290 II 291 (385)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 264
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.22 E-value=0.0025 Score=45.29 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=48.6
Q ss_pred HHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchh
Q 046424 39 SATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPV 111 (266)
Q Consensus 39 ~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~ 111 (266)
.-.++.|+..|...+ +.|..|||+.+|+ ++..+.+.|+.|...|++.... +|+ ...|.+|+.
T Consensus 23 ~~~~~~il~~l~~~~--~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~----~~r-~~~y~l~~~ 84 (99)
T 3cuo_A 23 HPKRLLILCMLSGSP--GTSAGELTRITGL----SASATSQHLARMRDEGLIDSQR----DAQ-RILYSIKNE 84 (99)
T ss_dssp SHHHHHHHHHHTTCC--SEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEE----CSS-CEEEEECCH
T ss_pred ChHHHHHHHHHHhCC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEe----cCC-EEEEEEChH
Confidence 345667888887755 8999999999999 9999999999999999999762 121 344666653
No 265
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.22 E-value=0.0029 Score=44.99 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=53.7
Q ss_pred HHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424 35 MTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK 113 (266)
Q Consensus 35 ~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~ 113 (266)
.++..-.++.|+..|...+ +.|..+||+.+++ ++..+.+.|+.|...|+++.... ..+++ ...|.+|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~~--~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~-~~~~r-~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPRR--KAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKV-IADRP-RTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHHS--EEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEE-CSSSC-EEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhcC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEec-CCCcc-eEEEEECHHHH
Confidence 4555566788888887655 8999999999999 99999999999999999996420 01111 34578887664
No 266
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.20 E-value=0.0028 Score=46.40 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=46.7
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS 112 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s 112 (266)
.++.|+..|. .| +.|+.|||+.+|+ ++..+.+.|+.|...|++.... +|+ ...|.+|+.+
T Consensus 22 ~r~~IL~~L~-~~--~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~----~gr-~~~y~l~~~~ 81 (114)
T 2oqg_A 22 TRWEILTELG-RA--DQSASSLATRLPV----SRQAIAKHLNALQACGLVESVK----VGR-EIRYRALGAE 81 (114)
T ss_dssp HHHHHHHHHH-HS--CBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEE----ETT-EEEEEECSHH
T ss_pred HHHHHHHHHH-cC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEe----cCC-EEEEEechHH
Confidence 4566778884 45 8999999999999 9999999999999999998752 111 3347777644
No 267
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=96.19 E-value=0.0089 Score=49.88 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=34.3
Q ss_pred HHHHHccCCC-CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhh
Q 046424 191 EILEIYKGFE-GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKH 239 (266)
Q Consensus 191 ~i~~~~~~~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~ 239 (266)
..++.+. .. ...+|+|||||+|.++..++++ ...+++.+|+. ..++.
T Consensus 27 ~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~ 75 (232)
T 3opn_A 27 KALKEFH-LEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAW 75 (232)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCH
T ss_pred HHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHH
Confidence 3445554 32 3569999999999999999988 33489999995 34443
No 268
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.19 E-value=0.0046 Score=44.49 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=48.9
Q ss_pred HHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424 36 TIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP 110 (266)
Q Consensus 36 ~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~ 110 (266)
+|.--.++.|+..|.+ | +.++.|||+.+|+ ++..+.+.|+.|...|+|...+ +|+ .-.|++|+
T Consensus 19 ~l~~~~r~~Il~~L~~-~--~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~----~g~-~~~y~l~~ 81 (102)
T 3pqk_A 19 TLSHPVRLMLVCTLVE-G--EFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRR----NIK-QIFYRLTE 81 (102)
T ss_dssp HHCSHHHHHHHHHHHT-C--CBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEEC----SSS-CCEEEECS
T ss_pred HcCCHHHHHHHHHHHh-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE----eCC-EEEEEECc
Confidence 3344466677888865 4 8999999999999 8999999999999999999762 221 34577765
No 269
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.16 E-value=0.0025 Score=54.71 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=48.1
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK 113 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~ 113 (266)
-+.|+++|.+.+ .++|+.|||+.+|+ +..-+.|+|..|...|+|..+. +++|++++...
T Consensus 32 al~IL~~l~~~~-~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~~--------~~~Y~LG~~~~ 90 (275)
T 3mq0_A 32 AVRILDLVAGSP-RDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARSA--------DGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHHCS-SCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEECT--------TSEEEECTHHH
T ss_pred HHHHHHHHhhCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECC--------CCcEEehHHHH
Confidence 356899998764 37999999999999 8889999999999999999862 56899987543
No 270
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=96.16 E-value=0.0013 Score=59.24 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=49.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCC------CCC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEV------PKG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~------P~~-D~~~l 265 (266)
...+|+|+|||+|.++..+++. +..+++.+|+ |..++.++.+ ++++++.+|.++.. +.. |++++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5689999999999999999987 4458999999 5567665542 28999999998732 234 88876
No 271
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=96.13 E-value=0.0012 Score=59.37 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=49.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCC------CCC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEV------PKG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~------P~~-D~~~l 265 (266)
...+|+|+|||+|.++..+++. ..+++.+|+ |..++.++.+ +.++++.+|.++.. +.. |++++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 5679999999999999999998 567899999 5677766542 45999999998732 334 88876
No 272
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=96.11 E-value=0.0044 Score=55.97 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=40.4
Q ss_pred HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC
Q 046424 189 MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC 243 (266)
Q Consensus 189 ~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~ 243 (266)
...+++.+. .....+|||||||+|.++..++++. .+++++|+. ..++.++..
T Consensus 96 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~ 148 (416)
T 4e2x_A 96 ARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREK 148 (416)
T ss_dssp HHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTT
T ss_pred HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHc
Confidence 345566665 5567899999999999999999874 489999995 467766653
No 273
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=96.10 E-value=0.0071 Score=54.04 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=50.4
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEEeccCCCCCCC-C--CEEE
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPK-G--QAIF 264 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~~~P~-~--D~~~ 264 (266)
+....++||+|++.|.+...++++ ..+++.+|.-+.-+.+...++|+++.+|.|+..|. + |+++
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vv 275 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMV 275 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEE
Confidence 346789999999999999999998 67999999755444444468999999999995443 3 6654
No 274
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=96.06 E-value=0.0017 Score=55.57 Aligned_cols=39 Identities=10% Similarity=-0.049 Sum_probs=28.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhC
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHA 240 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a 240 (266)
...+|||||||+|.+ ..++...+..+++++|+. ..++.+
T Consensus 71 ~~~~vLDiGcG~G~~-~~l~~~~~~~~v~gvD~s~~~l~~a 110 (289)
T 2g72_A 71 SGRTLIDIGSGPTVY-QLLSACSHFEDITMTDFLEVNRQEL 110 (289)
T ss_dssp CCSEEEEETCTTCCG-GGTTGGGGCSEEEEECSCHHHHHHH
T ss_pred CCCeEEEECCCcChH-HHHhhccCCCeEEEeCCCHHHHHHH
Confidence 457999999999994 444545556689999995 455543
No 275
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.04 E-value=0.0041 Score=46.19 Aligned_cols=65 Identities=14% Similarity=0.222 Sum_probs=51.0
Q ss_pred HHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchh
Q 046424 35 MTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPV 111 (266)
Q Consensus 35 ~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~ 111 (266)
.+|.--.++.|+..|.. | +.++.|||+.+|+ +...+.+.|+.|...|+|.... +|+ .-.|++++.
T Consensus 13 ~al~~~~R~~Il~~L~~-~--~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~----~gr-~~~y~l~~~ 77 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR-G--PATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHK----QGR-VRTCAIEKE 77 (118)
T ss_dssp HHHTSHHHHHHHHHHHT-C--CEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEE----ETT-EEEEEECSH
T ss_pred HHhCCHHHHHHHHHHHh-C--CCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEe----cCC-EEEEEECHH
Confidence 34445577788888875 4 8999999999999 9999999999999999998763 111 345777763
No 276
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=96.00 E-value=0.0065 Score=52.11 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=30.1
Q ss_pred CCceEEEecCCccHHH----HHHHHHCCCCeE--EEeech-HHHhhCC
Q 046424 201 GLNQLVDVAGGLGANL----KSIVSKYPQLRG--INFDLP-HVLKHAP 241 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~----~~l~~~~P~l~~--~v~Dlp-~vi~~a~ 241 (266)
...+|||||||+|.++ ..++.++|+.++ +++|.. ..++.++
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~ 99 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYK 99 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHH
Confidence 3569999999999754 455677898864 999984 4565443
No 277
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.94 E-value=0.0044 Score=44.43 Aligned_cols=48 Identities=13% Similarity=0.181 Sum_probs=43.9
Q ss_pred CCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424 57 LSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP 117 (266)
Q Consensus 57 ~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~ 117 (266)
.+..+||..+|+ +++.+++.++.|...|+++.. .+.|.+|+.|..++.
T Consensus 21 ~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~---------~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 21 SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE---------GKQYMLTKKGEELLE 68 (95)
T ss_dssp BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHHHHHH
T ss_pred CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE---------CCeeEEChhHHHHHH
Confidence 889999999999 999999999999999999987 456999999987664
No 278
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=95.91 E-value=0.0012 Score=55.90 Aligned_cols=39 Identities=10% Similarity=-0.057 Sum_probs=27.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhC
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHA 240 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a 240 (266)
...+|||||||+|.++..+++..- -+++++|+. ..++.+
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a 94 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREEL 94 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHH
Confidence 457999999999988766554432 258999995 355543
No 279
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.90 E-value=0.0068 Score=41.80 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=40.1
Q ss_pred hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
|.+.|.+.| .+++.|||+.+++ ++.-++|.|..|...|++.+.
T Consensus 7 Il~~L~~~g--~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRG--RMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHSC--SBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcC--CCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 678888877 9999999999999 999999999999999999876
No 280
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.87 E-value=0.0053 Score=43.82 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=50.2
Q ss_pred hhChhHHHhhcCCCCCCHHHH----HhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEI----ASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~el----A~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
++.|+..|...+ +.|..+| |+.+++ ++..+.++++-|...|+++.... .+ ...|.+|+.|..+.
T Consensus 10 q~~iL~~l~~~~--~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~----~r-~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 10 EAIVLAYLYDNE--GIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQE----RG-EKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHHTTCT--TCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEE----TT-EEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcC--CcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEec----CC-ceEEEECHHHHHHH
Confidence 445677777665 8999999 999999 99999999999999999997521 10 45678888776555
No 281
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.87 E-value=0.0064 Score=42.82 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=40.6
Q ss_pred ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.|.+.|.+.| .+++.|||+.+++ ++.-++|.|..|...|++.+.
T Consensus 6 ~Il~~L~~~g--~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQG--RMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSC--SEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHcC--CCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3678888877 9999999999999 999999999999999999986
No 282
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=95.85 E-value=0.0078 Score=43.84 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=47.1
Q ss_pred hhHHHhhcCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 45 LLEIMAKASPTQLSSSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 45 lfd~L~~~g~~~~t~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
|+..|.. | +.+..||++.+ ++ ++..+.+.|+-|...|+|+.... ..+++ .-.|.+|+.+..+.
T Consensus 19 IL~~L~~-~--~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~-~~d~r-~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 19 ILXHLTH-G--KKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVY-NQVPP-KVEYELSEYGRSLE 82 (107)
T ss_dssp HHHHHTT-C--CBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEE-CSSSC-EEEEEECTTGGGGH
T ss_pred HHHHHHh-C--CCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeec-CCCCC-eEEEEECccHHHHH
Confidence 4445543 4 89999999999 99 99999999999999999997631 11111 34589998776544
No 283
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=95.84 E-value=0.015 Score=45.04 Aligned_cols=55 Identities=16% Similarity=0.084 Sum_probs=40.8
Q ss_pred CCCceEEEecCCccH-HHHHHHHHCCCCeEEEeech-HHHhhCCCCCCceEEeccCCCCCCC---C-CEEE
Q 046424 200 EGLNQLVDVAGGLGA-NLKSIVSKYPQLRGINFDLP-HVLKHAPSCPGVEHVGGDMFVEVPK---G-QAIF 264 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~-~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~~ri~~~~gD~f~~~P~---~-D~~~ 264 (266)
....++||||||.|. .+..|++. -+..+++.|+. ..++ ++..|+|++.+. + |+++
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIY 94 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIY 94 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEE
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEE
Confidence 355799999999995 77777763 46778999973 3332 888999997662 4 8773
No 284
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=95.81 E-value=0.0022 Score=57.85 Aligned_cols=64 Identities=17% Similarity=0.114 Sum_probs=49.4
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------C-C-CceEEeccCCCCCC------CC-CEEE
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------C-P-GVEHVGGDMFVEVP------KG-QAIF 264 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~-~-ri~~~~gD~f~~~P------~~-D~~~ 264 (266)
...+|+|+|||+|.++..+++.. ..+++.+|+. ..++.++. . + +++++.+|.++..+ .. |+++
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 56899999999999999999875 4579999994 56666543 1 2 78999999987322 34 8887
Q ss_pred e
Q 046424 265 M 265 (266)
Q Consensus 265 l 265 (266)
+
T Consensus 299 ~ 299 (396)
T 3c0k_A 299 M 299 (396)
T ss_dssp E
T ss_pred E
Confidence 5
No 285
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=95.79 E-value=0.0041 Score=55.58 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=41.2
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCC
Q 046424 203 NQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV 255 (266)
Q Consensus 203 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~ 255 (266)
.+|+|+|||+|.++..+++.. -+++.+|.. ..++.++. .++++++.+|.++
T Consensus 215 ~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~ 272 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE 272 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHH
T ss_pred CEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 679999999999999988754 478999984 56666553 2689999999876
No 286
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.79 E-value=0.0054 Score=45.13 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCC--HHHHHhhC-CCCCCCCcchHHHHHHHHhcCCcccccccc
Q 046424 20 DFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLS--SSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVS 96 (266)
Q Consensus 20 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t--~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~ 96 (266)
+...+++.+.+.|.... +..|.. | +.+ +.||++.+ |+ ++..+.+.|+.|...|+|+....
T Consensus 16 ~~~~~l~~l~~~wrl~I---------L~~L~~-g--~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~- 78 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLI---------ISVLGN-G--STRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG- 78 (111)
T ss_dssp TTSSTHHHHHSTTHHHH---------HHHHTS-S--SSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES-
T ss_pred HHHHHHHHHcCccHHHH---------HHHHhc-C--CCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec-
Confidence 34445566666664444 445553 4 777 99999999 99 99999999999999999998631
Q ss_pred CCCCccccceecchhccccc
Q 046424 97 NKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 97 ~~~~~~~~~y~~t~~s~~l~ 116 (266)
. .-.|++|+.|..+.
T Consensus 79 r-----~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 79 Q-----ITTYALTEKGMNVR 93 (111)
T ss_dssp S-----SEEEEECHHHHHHH
T ss_pred C-----cEEEEECccHHHHH
Confidence 1 56799999887655
No 287
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=95.78 E-value=0.011 Score=40.77 Aligned_cols=45 Identities=20% Similarity=0.213 Sum_probs=39.7
Q ss_pred hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
..|++.|.+.+ +.|..|||+.+|+ +...+.+.|..|...|++...
T Consensus 3 ~~Il~~L~~~~--~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNRHN--GGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHSC--CCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 34777887765 8999999999999 999999999999999999854
No 288
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.70 E-value=0.0059 Score=46.55 Aligned_cols=56 Identities=21% Similarity=0.221 Sum_probs=46.6
Q ss_pred HHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 47 EIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 47 d~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
..+...+ +.|..+||+.+++ ++..+.++++.|...|+|...+ ...|.+|+.+..+.
T Consensus 15 ~l~~~~~--~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~~--------~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 15 MLIEEKG--YARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYEK--------YRGLVLTSKGKKIG 70 (142)
T ss_dssp HHHHHHS--SCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEET--------TTEEEECHHHHHHH
T ss_pred HHHhhcC--CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEee--------CceEEEchhHHHHH
Confidence 3444545 8999999999999 9999999999999999999762 46799998876554
No 289
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=95.67 E-value=0.0084 Score=41.18 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=48.1
Q ss_pred HhhChhHHHhhcCC-CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424 41 TELGLLEIMAKASP-TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP 110 (266)
Q Consensus 41 ~~lglfd~L~~~g~-~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~ 110 (266)
.+..|+++|.+.++ .++|+.|||+++|+ +...+.+.|.-|...|++.... .. .+.|..++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g----~~--~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA----GT--PPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEEC----SS--SCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC----CC--CCceEecC
Confidence 35668888888742 26999999999999 9999999999999999998752 11 57787764
No 290
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=95.63 E-value=0.012 Score=53.01 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=45.9
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-----CCceEEeccCCCC---CCCC-CEEEe
Q 046424 202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-----PGVEHVGGDMFVE---VPKG-QAIFM 265 (266)
Q Consensus 202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-----~ri~~~~gD~f~~---~P~~-D~~~l 265 (266)
..+|||+|||+|.++..+++... +++.+|+. ..++.++.+ -..++..+|.++. .+.. |++++
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~ 286 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLL 286 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEE
T ss_pred CCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEE
Confidence 68999999999999999999854 49999995 466665542 1235668998873 2333 88875
No 291
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=95.61 E-value=0.0098 Score=50.11 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=48.5
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS 112 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s 112 (266)
-+.|++.|.+.+ .++|+.|||+.+|+ +...+.|+|+.|...|+++... .+.|++++..
T Consensus 10 ~l~iL~~l~~~~-~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~--------~~~Y~lg~~~ 67 (249)
T 1mkm_A 10 AFEILDFIVKNP-GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRKK--------DKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHHCS-SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECT--------TSCEEECTHH
T ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEECC--------CCcEEECHHH
Confidence 356788887653 27999999999999 9999999999999999999751 5789998743
No 292
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=95.61 E-value=0.046 Score=41.24 Aligned_cols=67 Identities=9% Similarity=0.027 Sum_probs=49.6
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|. .+ +.|..+||+.+++ +...+.++++-|...|+++.... ..|++ .-.+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~-~~--~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~-~~d~r-~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 38 LDFLVLRATS-DG--PKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRD-REDRR-KILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHT-TS--CBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEC-SSCTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHh-cC--CcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecC-CCCCc-eEEEEECHHHHHHH
Confidence 4555777887 55 8999999999999 99999999999999999997621 11111 22367777665444
No 293
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=95.60 E-value=0.014 Score=50.57 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=44.6
Q ss_pred CCCCceEEEecCCc------cHHHHHHHHHCC-CCeEEEeechHHHhhCCCCCCceE-EeccCCC-CCCCC-CEEEe
Q 046424 199 FEGLNQLVDVAGGL------GANLKSIVSKYP-QLRGINFDLPHVLKHAPSCPGVEH-VGGDMFV-EVPKG-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~------G~~~~~l~~~~P-~l~~~v~Dlp~vi~~a~~~~ri~~-~~gD~f~-~~P~~-D~~~l 265 (266)
.....+|+|||||+ |. ..+++..| +.+++.+|+.+. .+++++ +.+|+.+ +.+.. |+++-
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------v~~v~~~i~gD~~~~~~~~~fD~Vvs 129 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------VSDADSTLIGDCATVHTANKWDLIIS 129 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------BCSSSEEEESCGGGCCCSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------CCCCEEEEECccccCCccCcccEEEE
Confidence 45667999999955 66 44566777 689999999765 147999 9999998 45544 88863
No 294
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=95.51 E-value=0.0088 Score=50.18 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=49.9
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYF 115 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l 115 (266)
-+.|++.|.+.+ .++|+.|||+.+|+ +..-+.|+|+.|...|+++... . .++|++++....+
T Consensus 8 ~l~iL~~l~~~~-~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~---~----~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 8 AASIMRALGSHP-HGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG---P----AGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHHTCT-TCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG---G----GCEEEECSHHHHH
T ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC---C----CCeEEECHHHHHH
Confidence 345788887653 27999999999999 9999999999999999999862 0 4789998754433
No 295
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.48 E-value=0.0089 Score=46.59 Aligned_cols=68 Identities=21% Similarity=0.364 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424 33 LPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS 112 (266)
Q Consensus 33 ~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s 112 (266)
...+|.--.++.|+..|.. + +.|+.+||+.+|+ +...+.+.|+.|...|+|+..+ +|+ .-.|++|+.+
T Consensus 51 ~l~aL~~p~R~~IL~~L~~-~--~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~----~Gr-~~~y~lt~~~ 118 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS-G--EQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRK----DGR-FRYYRLDPQG 118 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG-C--CEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEE----ETT-EEEEEECHHH
T ss_pred HHHHhCCHHHHHHHHHHHh-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEe----cCC-EEEEEEChHH
Confidence 3566666788899999985 4 8999999999999 9999999999999999999763 221 3458887644
No 296
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=95.47 E-value=0.0062 Score=59.13 Aligned_cols=64 Identities=11% Similarity=0.056 Sum_probs=48.6
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--------CCceEEeccCCCC---CCCC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC--------PGVEHVGGDMFVE---VPKG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--------~ri~~~~gD~f~~---~P~~-D~~~l 265 (266)
...+|||+|||+|.++..+++... -+++.+|+. ..++.++.+ ++++++.+|.++. .... |+|++
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~ 615 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFI 615 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEE
Confidence 347999999999999999988543 369999995 466655431 4899999999983 2233 88876
No 297
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=95.46 E-value=0.0076 Score=44.77 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=47.2
Q ss_pred HHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424 38 KSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP 110 (266)
Q Consensus 38 ~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~ 110 (266)
.--.++.|+..|.. + +.++.|||+.+|+ ++..+.+.|+.|...|++...+ +|+ .-.|++++
T Consensus 19 ~~~~r~~IL~~L~~-~--~~~~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~----~gr-~~~y~l~~ 79 (118)
T 2jsc_A 19 ADPTRCRILVALLD-G--VCYPGQLAAHLGL----TRSNVSNHLSCLRGCGLVVATY----EGR-QVRYALAD 79 (118)
T ss_dssp SSHHHHHHHHHHHT-T--CCSTTTHHHHHSS----CHHHHHHHHHHHTTTTSEEEEE----CSS-SEEEEESS
T ss_pred CCHHHHHHHHHHHc-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEE----ECC-EEEEEECh
Confidence 33455677777874 4 8999999999999 9999999999999999999762 121 33577775
No 298
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=95.43 E-value=0.0081 Score=55.45 Aligned_cols=66 Identities=6% Similarity=0.043 Sum_probs=50.5
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeech-HHHhhCCCC------CCceEEeccCCC-C--CCCC-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDLP-HVLKHAPSC------PGVEHVGGDMFV-E--VPKG-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~-~--~P~~-D~~~l 265 (266)
.....+|+|+|||+|..+..+++..++ .+++.+|+. ..++.++++ . |+++.+|..+ + .+.. |+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~ 176 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLL 176 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEE
Confidence 445689999999999999999999875 689999994 455555432 4 8999999876 2 3444 88874
No 299
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.42 E-value=0.0084 Score=43.53 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=40.9
Q ss_pred HHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 40 ATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
-.++.|+..|.. + +.++.|||+.+|+ +...+.+.|+.|...|++...
T Consensus 26 ~~r~~IL~~L~~-~--~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 26 YNRIRIMELLSV-S--EASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp HHHHHHHHHHHH-C--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHh-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 355667777874 4 8999999999999 999999999999999999976
No 300
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.40 E-value=0.015 Score=43.75 Aligned_cols=45 Identities=16% Similarity=0.080 Sum_probs=37.7
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP 110 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~ 110 (266)
+.|..+||+.+++ ++..+.++|+.|...|+++..+ +. .+.|.++.
T Consensus 26 ~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~--g~----~ggy~L~~ 70 (129)
T 2y75_A 26 PTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIR--GA----YGGYVLGS 70 (129)
T ss_dssp CBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC----------CCEEESS
T ss_pred cCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecC--CC----CCceEeCC
Confidence 8999999999999 9999999999999999998752 11 36688765
No 301
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=95.36 E-value=0.019 Score=53.23 Aligned_cols=65 Identities=20% Similarity=0.199 Sum_probs=50.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCC-CCeEEEeech-HHHhhCCC------CCCceEEeccCCC-C--CCCC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV-E--VPKG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~-~--~P~~-D~~~l 265 (266)
...+|+|+|||.|..+..+++..+ ..+++.+|+. ..++.++. .++|+++.+|..+ + .+.. |+|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~ 193 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL 193 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence 567999999999999999999976 5789999985 35554443 2579999999987 3 4444 88875
No 302
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.35 E-value=0.013 Score=40.78 Aligned_cols=60 Identities=8% Similarity=0.016 Sum_probs=47.9
Q ss_pred HHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424 40 ATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS 112 (266)
Q Consensus 40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s 112 (266)
.....|++.|.+. ++|+.|||+++|+ +...+++.|.-|...|++..... . ...|+++...
T Consensus 17 ~~~~~IL~lL~~~---g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~~----~--PP~W~~~~~~ 76 (82)
T 1oyi_A 17 EIVCEAIKTIGIE---GATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSDD----I--PPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHHSSS---TEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECSS----S--SCEEESCC--
T ss_pred HHHHHHHHHHHHc---CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCCC----C--CCcceeccCc
Confidence 3455678889865 5999999999999 99999999999999999997621 1 5778887643
No 303
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=95.34 E-value=0.006 Score=51.71 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=50.1
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
-+.|++.|...+ .++|+.|||+.+|+ +..-+.|+|..|...|+++.+ ++.|++++....+.
T Consensus 16 ~l~iL~~l~~~~-~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~---------~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 16 GFAVLLAFDAQR-PNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS---------GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHHTCSSSC-SSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECGGGHHHH
T ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC---------CCEEEEcHHHHHHH
Confidence 345677776532 38999999999999 999999999999999999986 57899998655444
No 304
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.31 E-value=0.0045 Score=45.26 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=40.0
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.++.|+..|.. | +.|+.|||+.+|+ ++..+.+.|+.|...|+|...
T Consensus 26 ~r~~IL~~L~~-~--~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~ 71 (108)
T 2kko_A 26 RRLQILDLLAQ-G--ERAVEAIATATGM----NLTTASANLQALKSGGLVEAR 71 (108)
T ss_dssp TTHHHHHHHTT-C--CEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc-C--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 44566777765 4 8999999999999 999999999999999999976
No 305
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.30 E-value=0.013 Score=43.95 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=50.7
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ +.|..+||+.+++ ++..+.++++-|...|++.... ...|++ .-.|.+|+.+..+.
T Consensus 34 ~~~~iL~~l~~~~--~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~r-~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 34 VQFGVIQVLAKSG--KVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEK-NPNDQR-ETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHHSC--SEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcC--CcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeecc-CCCCCc-eeEEEECHHHHHHH
Confidence 4555788887766 8999999999999 9999999999999999999752 111211 22367777666444
No 306
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=95.30 E-value=0.014 Score=45.30 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=52.1
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...| ++|..+||+.+++ ++..+.++++-|...|+|+... ...|++ .-.+.+|+.|..++
T Consensus 47 ~q~~iL~~l~~~~--~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 47 PQFTALSVLAAKP--NLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAP-DPTHGR-RILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHHCT--TCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEE-CCSSSC-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecC-CCCcCC-eeEeEECHhHHHHH
Confidence 3455888888876 8999999999999 9999999999999999999763 111221 23477887776554
No 307
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=95.29 E-value=0.02 Score=43.46 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccCC
Q 046424 20 DFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVSNK 98 (266)
Q Consensus 20 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~ 98 (266)
+...+++++.+-|....|. .|.. | +.+..||++.+ |+ ++..|.+.|+-|...|+|+.... ..
T Consensus 15 pi~~~l~~lg~kW~l~IL~---------~L~~-g--~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~-~~ 77 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFY---------HMID-G--KKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVY-HQ 77 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHH---------HHTT-S--CBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEE-CS
T ss_pred cHHHHHHHHcCcCHHHHHH---------HHhc-C--CcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEec-CC
Confidence 4556666666666655544 3333 4 89999999999 99 99999999999999999997631 11
Q ss_pred CCccccceecchhcccccC
Q 046424 99 DGSVQRLYGLTPVSKYFVP 117 (266)
Q Consensus 99 ~~~~~~~y~~t~~s~~l~~ 117 (266)
+. ..-.|++|+.|..+.+
T Consensus 78 d~-r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 78 VP-PKVEYSLTEFGRTLEP 95 (131)
T ss_dssp SS-CEEEEEECTTGGGGHH
T ss_pred CC-CeEEEEECHhHHHHHH
Confidence 11 1346999999887664
No 308
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=95.23 E-value=0.034 Score=48.06 Aligned_cols=57 Identities=11% Similarity=0.108 Sum_probs=39.6
Q ss_pred HHHHHccCCC-CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhh-CCCCCCceEE
Q 046424 191 EILEIYKGFE-GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKH-APSCPGVEHV 249 (266)
Q Consensus 191 ~i~~~~~~~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~-a~~~~ri~~~ 249 (266)
.+++.+. .. ...+++|||||+|.++..+++. +..+++.+|+. ..++. ++..+|+..+
T Consensus 75 ~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~ 134 (291)
T 3hp7_A 75 KALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSM 134 (291)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEE
T ss_pred HHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCccccee
Confidence 4455554 33 3579999999999999988886 55689999994 34543 3334565444
No 309
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.21 E-value=0.01 Score=45.07 Aligned_cols=68 Identities=16% Similarity=0.246 Sum_probs=52.5
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ +.|..+||+.+++ ++..+.++++-|...|+|+... +..|++ .-.+.+|+.|..+.
T Consensus 32 ~q~~iL~~l~~~~--~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 32 NLFAVLYTLATEG--SRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQE-GEQDRR-KRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHHC--SBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECC-CSSCGG-GSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecc-CCCCCc-eeeeeEChhHHHHH
Confidence 4566888887776 8999999999999 9999999999999999999752 111211 23478888776554
No 310
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=95.20 E-value=0.053 Score=47.76 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=53.1
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeech-HHHhhCCC--CCCceEEeccCCC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLP-HVLKHAPS--CPGVEHVGGDMFV 255 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~a~~--~~ri~~~~gD~f~ 255 (266)
..+++.+. ......+||+.+|.|..+..|+++. |+.+.+++|.. ..++.++. .+|++++.+||-+
T Consensus 47 ~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 47 DEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp HHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred HHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 56677766 5566899999999999999999985 88999999995 57776643 2799999999876
No 311
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=95.18 E-value=0.0059 Score=52.02 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=48.6
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKY 114 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~ 114 (266)
-+.|++.|...+ .++|+.|||+.+|+ +..-+.|+|..|...|+++.+ +++|++++....
T Consensus 23 ~l~iL~~l~~~~-~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~---------~~~Y~Lg~~~~~ 81 (265)
T 2ia2_A 23 GLAVIRCFDHRN-QRRTLSDVARATDL----TRATARRFLLTLVELGYVATD---------GSAFWLTPRVLE 81 (265)
T ss_dssp HHHHHHTCCSSC-SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEES---------SSEEEECGGGGG
T ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec---------CCEEEEcHHHHH
Confidence 345677776532 38999999999999 999999999999999999976 578999885433
No 312
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.18 E-value=0.01 Score=45.09 Aligned_cols=79 Identities=14% Similarity=0.090 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccCC
Q 046424 20 DFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVSNK 98 (266)
Q Consensus 20 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~ 98 (266)
+...+++++.+.|.. .|+..|.. | +.+..||++.+ |+ ++..+.+.|+.|...|+|+.... ..
T Consensus 24 ~~~~~l~~l~~~w~l---------~IL~~L~~-g--~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~-~~ 86 (131)
T 1yyv_A 24 PSREVLKHVTSRWGV---------LILVALRD-G--THRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSY-PV 86 (131)
T ss_dssp THHHHHHHHHSHHHH---------HHHHHGGG-C--CEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEE-CS
T ss_pred CHHHHHHHHcCCcHH---------HHHHHHHc-C--CCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEec-CC
Confidence 344455555444443 34444553 4 89999999999 79 99999999999999999997631 11
Q ss_pred CCccccceecchhccccc
Q 046424 99 DGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 99 ~~~~~~~y~~t~~s~~l~ 116 (266)
+++ .-.|++|+.+..+.
T Consensus 87 d~r-~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 87 VPP-HVEYSLTPLGEQVS 103 (131)
T ss_dssp SSC-EEEEEECHHHHHHH
T ss_pred CCC-eEEEEECccHHHHH
Confidence 111 33699999886554
No 313
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=95.17 E-value=0.034 Score=48.48 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=50.0
Q ss_pred CCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeech-HHHhhCCC------CCCceEEeccCCCC---CC--CC-CEEE
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFVE---VP--KG-QAIF 264 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~~---~P--~~-D~~~ 264 (266)
.....+|+|+|+|.|..+..+++.. +.-+++.+|+. ..++.+++ ..+|+++.+|+.+- .+ .. |.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4456899999999999999999984 56789999994 35554443 25799999998762 11 23 8887
Q ss_pred e
Q 046424 265 M 265 (266)
Q Consensus 265 l 265 (266)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 5
No 314
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=95.17 E-value=0.0041 Score=52.87 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=48.0
Q ss_pred hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424 43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS 112 (266)
Q Consensus 43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s 112 (266)
+.|+++|.+.+ .++|+.|||+.+|+ +..-+.|+|..|...|++..+. . .++|++++..
T Consensus 9 l~IL~~l~~~~-~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~~---~----~~~Y~lG~~~ 66 (260)
T 3r4k_A 9 LTLLTYFNHGR-LEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQVE---G----ARSYRLGPQV 66 (260)
T ss_dssp HHHHTTCBTTB-SEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEECS---S----SSEEEECTTH
T ss_pred HHHHHHHhhCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---C----CCcEEcCHHH
Confidence 45778887632 38999999999999 9999999999999999999872 0 3789998743
No 315
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=95.12 E-value=0.018 Score=51.75 Aligned_cols=65 Identities=9% Similarity=-0.067 Sum_probs=48.8
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----C-----------------CCceEEeccCCCC--
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----C-----------------PGVEHVGGDMFVE-- 256 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----~-----------------~ri~~~~gD~f~~-- 256 (266)
...+|+|+|||+|..++.++++.|..+++.+|+. +.++.++. + +.|+++.+|..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 3578999999999999999999998899999994 45554432 1 2388899998662
Q ss_pred -CCCC-CEEEe
Q 046424 257 -VPKG-QAIFM 265 (266)
Q Consensus 257 -~P~~-D~~~l 265 (266)
.+.. |++++
T Consensus 127 ~~~~~fD~I~l 137 (378)
T 2dul_A 127 ERHRYFHFIDL 137 (378)
T ss_dssp HSTTCEEEEEE
T ss_pred hccCCCCEEEe
Confidence 3333 77764
No 316
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.08 E-value=0.014 Score=43.98 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=53.4
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ +.|..+||+.+++ ++..+.+.++-|...|+++... ...|++ .-.|.+|+.+..+.
T Consensus 32 ~~~~iL~~l~~~~--~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~-~~~d~r-~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKDA--PLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKR-NPDNQR-EVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHHC--SBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSSTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence 4455888887766 8999999999999 9999999999999999999763 111221 33588888887666
No 317
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.07 E-value=0.01 Score=45.22 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=49.1
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...| ++|..+||+.+++ ++..+.++++-|...|+|+.... ..|++ .-.+.+|+.+..+.
T Consensus 41 ~~~~iL~~l~~~~--~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~-~~D~R-~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 41 TEWRIISVLSSAS--DCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGH-SEDKR-TYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHSS--SBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecC-CCCcc-eeEeEECHhHHHHH
Confidence 4566888888876 8999999999999 99999999999999999997621 11221 23466776665443
No 318
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=95.03 E-value=0.05 Score=41.42 Aligned_cols=69 Identities=12% Similarity=0.194 Sum_probs=47.3
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ +++|..+||+.+++ ++..+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus 40 ~q~~vL~~l~~~~-~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 40 RSYSVLVLACEQA-EGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTL-DPSDRR-NKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHST-TCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-------------CEECHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeC-Cccccc-hheeeECHHHHHHH
Confidence 4555777776543 27899999999999 9999999999999999999752 111111 12267777666544
No 319
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.02 E-value=0.046 Score=39.59 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCcccccccc
Q 046424 18 EQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVS 96 (266)
Q Consensus 18 ~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~ 96 (266)
.-+...+++.+.+.+....|. .|.. | +.+..||++.+ |+ ++..+.+.|+.|...|+|+....
T Consensus 12 ~c~~~~~l~~l~~~~~~~IL~---------~L~~-~--~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~- 74 (107)
T 2fsw_A 12 ECPVRKSMQIFAGKWTLLIIF---------QINR-R--IIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQY- 74 (107)
T ss_dssp TCHHHHHHHHHTSSSHHHHHH---------HHTT-S--CEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEE-
T ss_pred CCCHHHHHHHHcCccHHHHHH---------HHHh-C--CcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeec-
Confidence 345566666666666654443 4443 4 89999999999 59 99999999999999999997631
Q ss_pred CCCCccccceecchhccccc
Q 046424 97 NKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 97 ~~~~~~~~~y~~t~~s~~l~ 116 (266)
..+++ .-.|.+|+.+..+.
T Consensus 75 ~~d~r-~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 75 PEVPP-RVEYSLTPLGEKVL 93 (107)
T ss_dssp CSSSC-EEEEEECHHHHTTH
T ss_pred CCCCC-eeEEEECccHHHHH
Confidence 11111 34599999887554
No 320
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.00 E-value=0.013 Score=49.50 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=52.5
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|.+.+ ++|..|||+.+|+ +...+.|.|+-|...|+++..+ . ...|.+|+.+..+.
T Consensus 153 ~~~~IL~~L~~~~--~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~~--r-----~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 153 EEMKLLNVLYETK--GTGITELAKMLDK----SEKTLINKIAELKKFGILTQKG--K-----DRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHHHT--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET--T-----TTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC--C-----ccEEEECHHHHHHH
Confidence 3556777776666 8999999999999 9999999999999999999762 1 56799999887654
No 321
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=95.00 E-value=0.0088 Score=45.36 Aligned_cols=68 Identities=19% Similarity=0.226 Sum_probs=50.7
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ ++|..+||+.+++ ++..+.++++-|...|+|+... ...|++ .-.+.+|+.|..+.
T Consensus 38 ~~~~iL~~l~~~~--~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 38 EQWSVLEGIEANE--PISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREI-STEDRR-ISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHHS--SEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-----CC-SCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcC--CcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccC-CCccCc-eeeeeECHHHHHHH
Confidence 4556778887766 8999999999999 9999999999999999999762 111221 23477787766544
No 322
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=94.99 E-value=0.012 Score=40.47 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=38.5
Q ss_pred hhHHHhhc-----CCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 45 LLEIMAKA-----SPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 45 lfd~L~~~-----g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
|++.|.+. | .|.|+.|||+.+|+ ++..+++-|..|...|++...
T Consensus 9 IL~~I~~~i~~~~g-~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 9 IISIVQERQNMDDG-APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhhccC-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 56666665 3 29999999999999 889999999999999999987
No 323
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=94.96 E-value=0.03 Score=44.11 Aligned_cols=45 Identities=27% Similarity=0.459 Sum_probs=39.0
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP 110 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~ 110 (266)
++|.++||+.+++ ++..+++++..|...|+|+..+ +. +|-|.+..
T Consensus 28 ~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~r--G~----~GGy~Lar 72 (162)
T 3k69_A 28 KVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGTV--GK----NGGYQLDL 72 (162)
T ss_dssp CBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEEC--ST----TCEEECCS
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec--CC----CCCeEecC
Confidence 8999999999999 9999999999999999998763 21 45688875
No 324
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=94.96 E-value=0.015 Score=44.59 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=50.1
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ ++|..+||+.+++ +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus 44 ~~~~iL~~l~~~~--~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 44 PEWRVLACLVDND--AMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVA-DAKDKR-RVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHHSSCS--CBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC--------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHHCC--CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc-CCCcCC-eeEeEECHHHHHHH
Confidence 3455778887765 8999999999999 9999999999999999999752 111111 23477887776544
No 325
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=94.94 E-value=0.014 Score=43.77 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=50.8
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ +.|..+||+.+++ +...+.++++-|...|+++.... ..|++ .-.|.+|+.+..+.
T Consensus 39 ~~~~iL~~l~~~~--~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~-~~d~R-~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 39 TQWAALVRLGETG--PCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSAD-PDDGR-RLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHHS--SBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEE-TTEEE-EEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCC-CCCCC-eeeeEECHhHHHHH
Confidence 4566888887766 8999999999999 99999999999999999997521 11110 12377777665443
No 326
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=94.92 E-value=0.013 Score=44.14 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=51.1
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+.++.|..+||+.+++ ++..+.++++-|...|+|+... +..|++ .-.+.+|+.|..+.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~-~~~D~R-~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYV-DAQDTR-RKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CCC--C-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecC-CCCCCC-eeeeEECHHHHHHH
Confidence 4556777787764348999999999999 9999999999999999999763 111221 23467777666544
No 327
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=94.91 E-value=0.016 Score=43.27 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=41.4
Q ss_pred HHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 40 ATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
-.++.|+..|.+ + +.++.+||+.+|+ +...+.+.|+.|...|++...
T Consensus 46 ~~rl~IL~~L~~-~--~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~ 92 (122)
T 1r1t_A 46 PNRLRLLSLLAR-S--ELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYR 92 (122)
T ss_dssp HHHHHHHHHHTT-C--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 356678888875 4 8999999999999 999999999999999999976
No 328
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=94.82 E-value=0.018 Score=42.21 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccCC
Q 046424 20 DFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVSNK 98 (266)
Q Consensus 20 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~ 98 (266)
+...+++...+.+... |+..|.. | +.+..|||+.+ ++ ++..+.+.|+-|...|+|+.... ..
T Consensus 11 ~~~~~l~~l~~~~~~~---------IL~~L~~-~--~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~-~~ 73 (112)
T 1z7u_A 11 SINLALSTINGKWKLS---------LMDELFQ-G--TKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESF-NE 73 (112)
T ss_dssp HHHHHHHTTCSTTHHH---------HHHHHHH-S--CBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEE-CC
T ss_pred CHHHHHHHHcCccHHH---------HHHHHHh-C--CCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeec-CC
Confidence 3444444444444433 4445554 4 89999999999 99 99999999999999999997631 11
Q ss_pred CCccccceecchhccccc
Q 046424 99 DGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 99 ~~~~~~~y~~t~~s~~l~ 116 (266)
|++ .-.|.+|+.+..+.
T Consensus 74 d~r-~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 74 LPP-RVEYTLTPEGYALY 90 (112)
T ss_dssp SSC-EEEEEECHHHHHHH
T ss_pred CCC-eEEEEECHhHHHHH
Confidence 111 33489998876544
No 329
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=94.82 E-value=0.0085 Score=55.19 Aligned_cols=67 Identities=6% Similarity=-0.047 Sum_probs=50.3
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeech-HHHhhCCC------CCCceEEeccCCC-C--CCCC-CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV-E--VPKG-QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~-~--~P~~-D~~~l 265 (266)
.....+|+|+|||.|..+..+++..++ .+++.+|+. ..++.+++ ..+|+++.+|..+ + .+.. |+|++
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~ 181 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVV 181 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEE
Confidence 445689999999999999999998764 689999995 35554443 2568999998876 2 3444 88874
No 330
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=94.78 E-value=0.017 Score=43.35 Aligned_cols=68 Identities=19% Similarity=0.145 Sum_probs=50.8
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.++..|...+ +.|..+||+.+++ ++..+.++++-|...|+++... ...|++ .-.+.+|+.+..+.
T Consensus 35 ~~~~iL~~l~~~~--~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 35 AQFKVLCSIRCAA--CITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP-NPNDKR-GVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHHHS--SBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CTTCSS-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecC-CcccCc-eeEeEEChhHHHHH
Confidence 3455777787765 8999999999999 9999999999999999999752 111211 22377887766544
No 331
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=94.77 E-value=0.016 Score=43.40 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=50.0
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ +.|..+||+.+++ +...+.++++-|...|+++.... ..|++ .-.+.+|+.+..+.
T Consensus 30 ~~~~iL~~l~~~~--~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~-~~d~R-~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 30 AQVACLLRIHREP--GIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQD-PENRR-RYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHHST--TCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEE-TTEEE-EEEEEECHHHHHTH
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecC-CCCce-eEEeeECHhHHHHH
Confidence 3455777887765 8999999999999 99999999999999999997521 11110 12267777665444
No 332
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=94.76 E-value=0.027 Score=44.22 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=39.0
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP 110 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~ 110 (266)
+.|.++||+.+++ ++..++++|..|...|+|...+ +. +|.|.++.
T Consensus 44 ~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~r--G~----~GGy~Lar 88 (159)
T 3lwf_A 44 PISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIR--GA----HGGYVLNG 88 (159)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC--ST----TCEEEECS
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEec--CC----CCceEecC
Confidence 8999999999999 9999999999999999999763 21 45688764
No 333
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.76 E-value=0.022 Score=43.72 Aligned_cols=68 Identities=21% Similarity=0.101 Sum_probs=51.4
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ +.|..+||+.+++ +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus 45 ~~~~iL~~l~~~~--~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 45 TELYAFLYVALFG--PKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREM-DPVDRR-TYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHHC--CBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEE-CTTTSS-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeC-CCCCcc-eeEEEECHHHHHHH
Confidence 4666888887766 8999999999999 9999999999999999999752 111221 23367777666444
No 334
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.75 E-value=0.025 Score=42.88 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=51.0
Q ss_pred HHhhChhHHHhh-cCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 40 ATELGLLEIMAK-ASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 40 a~~lglfd~L~~-~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
..++.|+..|.. .+ +.|..+||+.+++ +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus 35 ~~~~~iL~~l~~~~~--~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 35 FSQLVVLGAIDRLGG--DVTPSELAAAERM----RSSNLAALLRELERGGLIVRHA-DPQDGR-RTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHTTS--CBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC--------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--CCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCC-CCCCCC-ceeeEECHHHHHHH
Confidence 355678888877 65 8999999999999 9999999999999999999762 111111 22377777666444
No 335
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=94.72 E-value=0.014 Score=44.00 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=50.9
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ +.|..+||+.+++ +...+.+.++-|...|+++... ...|++ .-.+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~~~~--~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 38 PQFLVLTILWDES--PVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRER-SEVDQR-EVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHHSS--EEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEE-CSSSTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcC--CcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeec-CCCCcc-eEEEEEChHHHHHH
Confidence 4556788887766 8999999999999 8999999999999999999763 111111 22467777665444
No 336
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=94.70 E-value=0.033 Score=43.56 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=51.9
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ ++|..+||+.+++ +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus 46 ~~~~iL~~L~~~~--~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 46 PQFRTLVILSNHG--PINLATLATLLGV----QPSATGRMVDRLVGAELIDRLP-HPTSRR-ELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHHHC--SEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCSS-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHHHHHHH
Confidence 4556788887766 8999999999999 9999999999999999999752 111221 23377888776554
No 337
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=94.69 E-value=0.011 Score=50.25 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=46.4
Q ss_pred hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424 43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS 112 (266)
Q Consensus 43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s 112 (266)
+.|++.|...+ .++|+.|||+.+|+ +..-+.|+|+.|...|+++.+. .++|.+++..
T Consensus 26 l~iL~~l~~~~-~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~~--------~~~Y~lg~~~ 82 (260)
T 2o0y_A 26 IDLLELFDAAH-PTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSRA--------DGSYSLGPEM 82 (260)
T ss_dssp HHHHTTCBTTB-SSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEECT--------TSCEEECHHH
T ss_pred HHHHHHHhhCC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECC--------CCeEEecHHH
Confidence 45677775422 28999999999999 9999999999999999999862 3489998753
No 338
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=94.67 E-value=0.064 Score=40.87 Aligned_cols=67 Identities=15% Similarity=0.244 Sum_probs=46.5
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccc-ccCCCCccccceecchhccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNL-VSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~-~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
+..|+..| ..+ +.|..+||+.+++ ++..+.++++-|...|+|+..+ .+..|++ .-.+.+|+.|..+.
T Consensus 40 q~~iL~~l-~~~--~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R-~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNML-SIE--ALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQR-LKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHH-HHS--CBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC------------CCBEECHHHHHHH
T ss_pred HHHHHHHH-HcC--CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCC-eeEEEECHhHHHHH
Confidence 34478888 665 8999999999999 9999999999999999999621 0111211 22366676665443
No 339
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=94.66 E-value=0.027 Score=43.09 Aligned_cols=67 Identities=22% Similarity=0.187 Sum_probs=49.9
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
++.|+..|...+ +.|..+||+.+++ ++..+.++++-|...|+|+.... ..|++ .-.+.+|+.+..+.
T Consensus 39 ~~~iL~~l~~~~--~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~-~~d~R-~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKHG--SLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHN-TKDRR-VIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHHS--EEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEC-SSCTT-SEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCC-CCCCc-eEEEEECHHHHHHH
Confidence 445778887765 8999999999999 99999999999999999997621 11111 22467777665444
No 340
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=94.65 E-value=0.072 Score=41.01 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=49.1
Q ss_pred hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
..|+..|...+ ++|..+||+.+++ ++..+.++++-|...|+|+... ...|++ .-.+.+|+.|..+.
T Consensus 53 ~~vL~~l~~~~--~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRED--GINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQR-DEKDRR-SYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHSC--SEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CC---C-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec-CCCCCC-eeEEEECHHHHHHH
Confidence 44677777766 8999999999999 9999999999999999999763 111221 22467777666544
No 341
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=94.62 E-value=0.015 Score=45.21 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=51.3
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ ++|..+||+.+++ ++..+.++++-|...|+|+... ...|++ .-.+.+|+.|..+.
T Consensus 54 ~q~~vL~~l~~~~--~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~-~~~DrR-~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 54 PKLRLLSSLSAYG--ELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSI-SDADQR-KRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHHHS--EEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC----CCC-SCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeC-CcccCC-eeEeeECHHHHHHH
Confidence 3455788887766 8999999999999 9999999999999999999762 111221 23477787776544
No 342
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=94.60 E-value=0.0089 Score=45.30 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=49.7
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ +.|..+||+.+++ ++..+.++++-|...|+|+... ++.|++ .-.+.+|+.|..+.
T Consensus 37 ~q~~vL~~l~~~~--~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 37 TGYIVLMAIENDE--KLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTR-EEKDER-NLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHHSCTTC--EEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHHcC--CcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecC-CCCCcc-eeeeeEChHHHHHH
Confidence 3445677776665 8999999999999 9999999999999999999762 111221 23477888776554
No 343
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=94.58 E-value=0.017 Score=44.59 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=48.4
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ +.|..+||+.+++ +...+.++++-|...|+|+... ...|++ .-.|.+|+.+..+.
T Consensus 50 ~~~~iL~~l~~~~--~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 50 PEWRVITILALYP--GSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRET-HGDDRR-RSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHHST--TCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-----------CCCEECHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeec-CCCCCC-eeEEEECHHHHHHH
Confidence 3455788887765 8999999999999 9999999999999999999752 111111 23466777665444
No 344
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.57 E-value=0.019 Score=43.48 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=53.5
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP 117 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~ 117 (266)
.++.|+..|...+ +.|..+||+.+++ +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+..
T Consensus 41 ~~~~iL~~l~~~~--~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~-~~~d~R-~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 41 PQYLALLLLWEHE--TLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKR-SEEDER-SVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHHS--EEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCB-CSSCTT-SBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHCC--CCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHhHHHHHH
Confidence 4556778887766 8999999999999 9999999999999999999762 111221 234788988887664
No 345
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=94.56 E-value=0.018 Score=43.84 Aligned_cols=67 Identities=9% Similarity=0.100 Sum_probs=49.8
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
++.|+..|...+ +.|..+||+.+++ +...+.++++-|...|++.... ...|++ .-.+.+|+.+..+.
T Consensus 44 ~~~iL~~l~~~~--~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~d~R-~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 44 QFVALQWLLEEG--DLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVR-DEHDRR-VVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHHC--SBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CCC----CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecC-CCCCcc-eeEeEECHhHHHHH
Confidence 445777887766 8999999999999 9999999999999999999752 111111 23377777666444
No 346
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=94.55 E-value=0.017 Score=39.74 Aligned_cols=49 Identities=16% Similarity=0.301 Sum_probs=41.1
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQL-----PTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~-----~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+..|++.|.+.+.++.|++||++.+ ++ +..-+.|.|..|...|+|.+.
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEE
Confidence 34558888876410289999999999 88 899999999999999999976
No 347
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=94.53 E-value=0.049 Score=40.02 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=42.0
Q ss_pred HHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 40 ATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
-.++.|+..|.+ + +.|+.+||+.+++ +...+.+.|+.|...|++...
T Consensus 32 ~~~~~il~~L~~-~--~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 32 PSRLMILTQLRN-G--PLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHHHHHHHHHH-C--CCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHH-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 456778888877 5 8999999999999 999999999999999999875
No 348
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=94.47 E-value=0.017 Score=52.06 Aligned_cols=65 Identities=9% Similarity=-0.007 Sum_probs=49.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCCC-------CC-ceEEeccCCCC----CCCC-CEEEe
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDL-PHVLKHAPSC-------PG-VEHVGGDMFVE----VPKG-QAIFM 265 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~~-------~r-i~~~~gD~f~~----~P~~-D~~~l 265 (266)
...+|+|+++|+|.+++.++++.++ -+++.+|+ |..++.++++ ++ ++++.+|.++- .+.. |+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4579999999999999999998766 46899999 5566665542 45 99999998762 2334 88876
No 349
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=94.47 E-value=0.02 Score=43.66 Aligned_cols=69 Identities=10% Similarity=0.171 Sum_probs=42.1
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
+..|+..|...+.+++|..+||+.+++ ++..+.++++-|...|+|+... +..|++ .-.+.+|+.|..+.
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~DrR-~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRI-PENNAR-QKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC----------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeC-CCCCch-hheeeECHHHHHHH
Confidence 445777787762228999999999999 9999999999999999999762 111111 22356666665444
No 350
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=94.43 E-value=0.022 Score=44.12 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=45.2
Q ss_pred HHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchh
Q 046424 34 PMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPV 111 (266)
Q Consensus 34 ~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~ 111 (266)
..+|++.+.+... .+ ++.|.++||+.+++ ++..++++|..|...|+|+..+ | .|.|.++.-
T Consensus 14 ~yAl~~L~~La~~----~~--~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~r-----G--~GGy~L~~~ 74 (149)
T 1ylf_A 14 SIAVHILSILKNN----PS--SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR-----G--PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHHHHS----CG--GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CCEEESSC
T ss_pred HHHHHHHHHHHhC----CC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEcc-----C--CCceEeCCC
Confidence 3456666555331 22 28999999999999 9999999999999999999762 2 466887753
No 351
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=94.43 E-value=0.028 Score=43.39 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCC
Q 046424 21 FLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDG 100 (266)
Q Consensus 21 ~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~ 100 (266)
..++++++...|....| ..|.. | +.+..||++.+|+ +...+.+.|+-|...|+|+.... . ..
T Consensus 14 ~~~~l~~l~~~w~l~IL---------~~L~~-g--~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~-~-~d 75 (146)
T 2f2e_A 14 VARPLDVIGDGWSMLIV---------RDAFE-G--LTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPA-E-SG 75 (146)
T ss_dssp TTTTHHHHCSSSHHHHH---------HHHHT-T--CCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEEC-S-SS
T ss_pred HHHHHHHhCCchHHHHH---------HHHHh-C--CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEec-C-CC
Confidence 33445555555544433 33433 4 8999999999999 99999999999999999997631 1 11
Q ss_pred ccccceecchhccccc
Q 046424 101 SVQRLYGLTPVSKYFV 116 (266)
Q Consensus 101 ~~~~~y~~t~~s~~l~ 116 (266)
. .-.|.+|+.+..+.
T Consensus 76 ~-~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 76 S-HQEYRLTDKGRALF 90 (146)
T ss_dssp S-CEEEEECHHHHTTH
T ss_pred C-eEEEEECchHHHHH
Confidence 1 34799999887554
No 352
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=94.43 E-value=0.026 Score=42.37 Aligned_cols=69 Identities=13% Similarity=0.247 Sum_probs=50.4
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
++.|+..|...++.+.|..+||+.+++ ++..+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKV-SGKDSR-QKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-SEEEEECHHHHTTH
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeC-CCcCCC-eeeeEECHHHHHHH
Confidence 445677777764237999999999999 9999999999999999999762 111111 22467787776444
No 353
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=94.42 E-value=0.027 Score=38.26 Aligned_cols=55 Identities=11% Similarity=0.177 Sum_probs=46.3
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLT 109 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t 109 (266)
+-.|+++|.++| .|++..|||+.+|+ +...+..+|.-|...|.+.... .-.|.++
T Consensus 21 eekVLe~LkeaG-~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SPk--------RCyw~~~ 75 (80)
T 2lnb_A 21 EQRILQVLTEAG-SPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLTS--------PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHT-SCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE--------TTEEEES
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCCC--------CceeeCC
Confidence 345778888877 49999999999999 9999999999999999998762 4567765
No 354
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.42 E-value=0.026 Score=42.58 Aligned_cols=47 Identities=15% Similarity=0.029 Sum_probs=41.4
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccc
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYF 115 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l 115 (266)
+.|..+||+.+++ +...+.+.++.|...|+|+.. ...|.+|+.+..+
T Consensus 31 ~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~---------~~~~~Lt~~g~~~ 77 (139)
T 2x4h_A 31 GAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK---------EDGVWITNNGTRS 77 (139)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHHHH
T ss_pred CcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec---------CCeEEEChhHHHH
Confidence 8999999999999 999999999999999999976 3568888876543
No 355
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.40 E-value=0.018 Score=43.57 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=50.8
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ +.|..+||+.+++ ++..+.++++-|...|+++.... ..|++ .-.|.+|+.+..+.
T Consensus 34 ~~~~iL~~l~~~~--~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~-~~d~r-~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 34 AQFDILQKIYFEG--PKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPD-PADRR-AYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHHC--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEE-TTEEE-EEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCC-CCCCc-eEEEEECHHHHHHH
Confidence 4556778887766 8999999999999 99999999999999999997621 11110 12467777666544
No 356
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=94.40 E-value=0.034 Score=42.77 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=38.8
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP 110 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~ 110 (266)
+.|.++||+.+++ ++..++++|..|...|+|...+ +. +|.|.++.
T Consensus 28 ~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~r--G~----~GGy~Lar 72 (143)
T 3t8r_A 28 CISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVR--GA----KGGYQLRV 72 (143)
T ss_dssp CEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECS--SS----SSEEEESS
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecC--CC----CCCeeecC
Confidence 8999999999999 9999999999999999999763 21 45688765
No 357
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=94.39 E-value=0.02 Score=43.84 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=51.0
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc--ccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTC--NLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~--~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ ++|..+||+.+++ ++..+.++++-|...|+|+. .. +..|++ .-.+.+|+.+..+.
T Consensus 42 ~~~~iL~~l~~~~--~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~-~~~d~R-~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 42 QQLAMINVIYSTP--GISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKT-IPNDSM-DLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHHST--TEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC---CTTCT-TCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcC-CCCCCc-eeEeEECHHHHHHH
Confidence 3456788887776 8999999999999 99999999999999999997 42 111221 23477887766544
No 358
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=94.38 E-value=0.012 Score=45.04 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=48.9
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ ++|..+||+.+++ ++..+.++++-|...|+|+... +..|++ .-.+.+|+.|..+.
T Consensus 42 ~q~~iL~~l~~~~--~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 42 SQYLVMLTLWEEN--PQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRER-QQSDKR-QLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHSS--SEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC-----------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCC-CCCCcc-eeeeeECHHHHHHH
Confidence 4556788887776 8999999999999 9999999999999999999762 111211 23467777665443
No 359
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=94.36 E-value=0.018 Score=43.01 Aligned_cols=69 Identities=10% Similarity=0.176 Sum_probs=50.1
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
+..++..|...+.++.|..+||+.+++ ++..+.++++-|...|+|+..+ +..|++ .-.+.+|+.|..+.
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKR-NEHDER-TVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBC-CSSSSC-CCEEECCSHHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence 445777776651128999999999999 9999999999999999999752 112221 23467777666544
No 360
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=94.33 E-value=0.02 Score=41.00 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=43.7
Q ss_pred HHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424 40 ATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP 110 (266)
Q Consensus 40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~ 110 (266)
-.++.|+..|...| +.++.|||+.+|+ ++..+.+.|+.|... ++...+ +|+ .-.|++++
T Consensus 27 ~~Rl~IL~~l~~~~--~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~~----~gr-~~~y~l~~ 85 (99)
T 2zkz_A 27 PMRLKIVNELYKHK--ALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRNR----QGL-EIYYSINN 85 (99)
T ss_dssp HHHHHHHHHHHHHS--CEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEEE----ETT-EEEEECCC
T ss_pred HHHHHHHHHHHHCC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhheE----eCc-EEEEEECh
Confidence 34556664444445 8999999999999 999999999999999 998653 121 33466664
No 361
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=94.30 E-value=0.017 Score=44.12 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=50.3
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
++.|+..|...+ ++|..+||+.+++ +...+.++++-|...|+|+.... ..|++ .-.+.+|+.+..+.
T Consensus 42 ~~~iL~~l~~~~--~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~-~~d~R-~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 42 QRAILEGLSLTP--GATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTN-PEHAR-SHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHST--TEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECC-SSSTT-SCEEEECHHHHHHH
T ss_pred HHHHHHHHHhCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCC-ccccc-ceeeEEChhhHHHH
Confidence 455788887766 8999999999999 99999999999999999997621 11111 22467777665443
No 362
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=94.29 E-value=0.02 Score=43.83 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=51.7
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP 117 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~ 117 (266)
.++.|+..|...+ ++|..+||+.+++ +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+..
T Consensus 48 ~~~~iL~~l~~~~--~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 48 PQYLVMLVLWETD--ERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTR-AASDER-QVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHHSC--SEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHHhCC--CcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecC-CcccCC-eeEeeECHHHHHHHH
Confidence 3556788887766 8999999999999 9999999999999999999762 111111 224788888876664
No 363
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=94.28 E-value=0.046 Score=48.15 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=47.7
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC---------------------------CCCceEEeccC
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS---------------------------CPGVEHVGGDM 253 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~---------------------------~~ri~~~~gD~ 253 (266)
+...||.+|||......++...+|+++.+=+|+|+|++.-+. .+++++++.|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 568999999999999999999999999999999998875211 16899999999
Q ss_pred CC
Q 046424 254 FV 255 (266)
Q Consensus 254 f~ 255 (266)
.+
T Consensus 177 ~d 178 (334)
T 1rjd_A 177 ND 178 (334)
T ss_dssp TC
T ss_pred CC
Confidence 98
No 364
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=94.28 E-value=0.026 Score=40.23 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=41.2
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.++.|+..|...+ +.|..+||+.+++ +...+.+.++.|...|+|...
T Consensus 21 ~~~~il~~l~~~~--~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 21 SDVRIYSLLLERG--GMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHHC--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 3555777776665 8999999999999 999999999999999999976
No 365
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=94.24 E-value=0.13 Score=45.99 Aligned_cols=63 Identities=24% Similarity=0.353 Sum_probs=44.0
Q ss_pred CceEEEecCCccHHHHHH--------HHHC-------CCCeEEEeechH-----HHhhCCC----------------CCC
Q 046424 202 LNQLVDVAGGLGANLKSI--------VSKY-------PQLRGINFDLPH-----VLKHAPS----------------CPG 245 (266)
Q Consensus 202 ~~~vvDVGGG~G~~~~~l--------~~~~-------P~l~~~v~Dlp~-----vi~~a~~----------------~~r 245 (266)
.-+|+|+|||+|..+..+ .+++ |+++++.-|||. +...... .+.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 578999999999977766 3344 889999999984 2222221 011
Q ss_pred -ceEEeccCCC-CCCCC--CEEE
Q 046424 246 -VEHVGGDMFV-EVPKG--QAIF 264 (266)
Q Consensus 246 -i~~~~gD~f~-~~P~~--D~~~ 264 (266)
+.-++|.|+. -+|.+ |+++
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~ 155 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFH 155 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEE
T ss_pred EEEecChhhhcccCCCcceEEEE
Confidence 4557899999 68876 7765
No 366
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=94.23 E-value=0.023 Score=42.93 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=49.9
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
++.|+..|...+ +.|..+||+.+++ +...+.++++-|...|++.... .+.|++ .-.+.+|+.+..+.
T Consensus 31 ~~~iL~~l~~~~--~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 31 QYLYLVRVCENP--GIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQE-DASNKK-IKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHHST--TEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHCc--CcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeec-CCCCCc-eeeeEEChhHHHHH
Confidence 445777787766 8999999999999 9999999999999999999763 111111 22367777665444
No 367
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.22 E-value=0.025 Score=42.70 Aligned_cols=66 Identities=18% Similarity=0.155 Sum_probs=47.8
Q ss_pred hhChhHHH-hhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccc
Q 046424 42 ELGLLEIM-AKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYF 115 (266)
Q Consensus 42 ~lglfd~L-~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l 115 (266)
++.|+..| ...+ +.|..+||+.+++ ++..+.++++-|...|+++... ...|++ .-.+.+|+.+..+
T Consensus 39 ~~~iL~~l~~~~~--~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~-~~~d~R-~~~~~lT~~G~~~ 105 (146)
T 2fbh_A 39 RWLVLLHLARHRD--SPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLA-VAEDRR-AKHIVLTPKADVL 105 (146)
T ss_dssp HHHHHHHHHHCSS--CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-CBTTBC-SCEEEECTTHHHH
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecC-CCcccC-eeeeEECHhHHHH
Confidence 44577777 5555 8999999999999 9999999999999999999762 111111 2236666655543
No 368
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=94.17 E-value=0.021 Score=44.12 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=50.9
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ ++|..+||+.+++ +...+.++++-|...|+|+... ...|++ .-.|.+|+.+..+.
T Consensus 53 ~~~~iL~~l~~~~--~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 53 AKMRALAILSAKD--GLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREV-DSDDQR-SSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHSC--SEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-C--CCS-SEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCC--CCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence 4556788888766 8999999999999 9999999999999999999752 111211 23477777665443
No 369
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.99 E-value=0.044 Score=42.24 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=46.4
Q ss_pred hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
|...|..++ +.|..+||+.+++ +...+.+.++.|...|+|+... +..+.+|+.+..+.
T Consensus 45 i~~~l~~~~--~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~~--------~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 45 ISDLIREVG--EARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMIP--------WRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHHHHS--CCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEET--------TTEEEECHHHHHHH
T ss_pred HHHHHHhCC--CcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEec--------CCceEEChhHHHHH
Confidence 334665555 7999999999999 9999999999999999998762 45578888776443
No 370
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.98 E-value=0.023 Score=42.63 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=50.8
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ +.|..+||+.+++ +...+.++++-|...|+|+.... ..|++ .-.+.+|+.+..+.
T Consensus 37 ~~~~iL~~l~~~~--~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~-~~d~R-~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 37 QQWRVIRILRQQG--EMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKA-PKDQR-RVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHHC--SEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEE-TTEEE-EEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecC-CCCCC-eeEEEECHHHHHHH
Confidence 4556788887766 8999999999999 99999999999999999997621 11110 22367777666444
No 371
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=93.76 E-value=0.035 Score=41.97 Aligned_cols=67 Identities=21% Similarity=0.354 Sum_probs=46.8
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|... ++|..+||+.+++ +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus 39 ~~~~iL~~l~~~---~~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~-~~~d~R-~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 39 TQEHILMLLSEE---SLTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSK-DSKDAR-VIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHTTC---CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC------------CCEECGGGHHHH
T ss_pred HHHHHHHHHHhC---CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEecc-CCCCCc-eeEEEECHhHHHHH
Confidence 455677788765 4999999999999 9999999999999999999762 111221 23466776555433
No 372
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=93.75 E-value=0.027 Score=44.09 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=49.1
Q ss_pred HhhChhHHHhh-cCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAK-ASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~-~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|.. .+ ++|..+||+.+++ +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus 54 ~q~~vL~~L~~~~~--~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 54 THWVTLHNIHQLPP--DQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQT-CASDRR-AKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHHSCS--SEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHHcCC--CCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeC-CCCCCC-eeEEEECHHHHHHH
Confidence 45567888876 44 7999999999999 9999999999999999999762 111211 23477777666544
No 373
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=93.75 E-value=0.058 Score=42.01 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=48.1
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...|+.++|..+||+.+++ ++..+.++++-|...|+|+... ...|++ .-.+.+|+.|..++
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTR-KPENRR-VVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecC-CCCCCC-eeEeEECHHHHHHH
Confidence 4455777787742238999999999999 9999999999999999999763 111111 12467787776555
No 374
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=93.63 E-value=0.051 Score=48.67 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=42.9
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--------------CCCceEEeccCCC
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS--------------CPGVEHVGGDMFV 255 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~--------------~~ri~~~~gD~f~ 255 (266)
.+++|+=||||.|..++++++. |.-+++++|+ |.|++.+++ .+|++++.+|-++
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~ 273 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP 273 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH
Confidence 4689999999999999999975 5578999999 558776542 1578888888765
No 375
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=93.63 E-value=0.031 Score=43.06 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=47.6
Q ss_pred hhChhHHHh-hcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 42 ELGLLEIMA-KASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 42 ~lglfd~L~-~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
++.|+..|. ..+ ++|..+||+.+++ +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus 49 ~~~iL~~L~~~~~--~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 49 KFDAMAQLARNPD--GLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAM-SADDRR-SFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHCTT--CEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC----------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeec-CCCCCC-eEEEEEChhHHHHH
Confidence 455788883 444 8999999999999 9999999999999999999752 111111 22367777665444
No 376
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=93.60 E-value=0.19 Score=40.07 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=51.4
Q ss_pred HHHhhChhHHHhhcCCCCCCHHHHHhhCC-CCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccc
Q 046424 39 SATELGLLEIMAKASPTQLSSSEIASQLP-TNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYF 115 (266)
Q Consensus 39 ~a~~lglfd~L~~~g~~~~t~~elA~~~~-~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l 115 (266)
-=.++.|+..|.. + +.|+.+|++.++ + +...+.+.|+.|...|+|+..++....|.....|++++.+..+
T Consensus 22 ~P~Rl~il~~L~~-~--~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~~ 92 (182)
T 4g6q_A 22 HPLRWRITQLLIG-R--SLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGDA 92 (182)
T ss_dssp SHHHHHHHHHTTT-S--CEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTTS
T ss_pred CHHHHHHHHHHHh-C--CCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccccC
Confidence 3367888889976 3 899999999996 8 7888999999999999998553111122224458888765444
No 377
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=93.48 E-value=0.028 Score=42.52 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=50.6
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...+ + |..+||+.+++ ++..+.++++-|...|+|+... .+.|++ .-.+.+|+.|..+.
T Consensus 38 ~~~~iL~~l~~~~--~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 38 LDFSILKATSEEP--R-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIR-DSKDRR-IVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHSC--E-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHCC--C-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc-CCCCCc-eEEEEECHHHHHHH
Confidence 4556888888875 6 99999999999 9999999999999999999763 111110 11478888776544
No 378
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=93.24 E-value=0.24 Score=43.88 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=41.1
Q ss_pred CceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCC---CCCCceEEeccCCC
Q 046424 202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAP---SCPGVEHVGGDMFV 255 (266)
Q Consensus 202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~---~~~ri~~~~gD~f~ 255 (266)
...|++||.|.|.+...|+++...-+.+++++-. .++..+ ..++++++.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 4789999999999999999975444688888742 222221 34799999999976
No 379
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=93.19 E-value=0.17 Score=42.31 Aligned_cols=74 Identities=12% Similarity=0.059 Sum_probs=50.7
Q ss_pred HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHh----hCCCC--CCceEEec-cCCCCCCC-CC
Q 046424 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLK----HAPSC--PGVEHVGG-DMFVEVPK-GQ 261 (266)
Q Consensus 190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~----~a~~~--~ri~~~~g-D~f~~~P~-~D 261 (266)
..+.+.+- +....+|||+||+.|.++.-++....--+++.+|+-..-- ..+.. .-|+|..+ |+|.--|. .|
T Consensus 68 ~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~D 146 (267)
T 3p8z_A 68 QWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKCD 146 (267)
T ss_dssp HHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCCS
T ss_pred HHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcccc
Confidence 34455553 6666799999999999999777777666889999843211 11122 67999999 98762223 47
Q ss_pred EEE
Q 046424 262 AIF 264 (266)
Q Consensus 262 ~~~ 264 (266)
+++
T Consensus 147 tll 149 (267)
T 3p8z_A 147 TLL 149 (267)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 380
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=93.06 E-value=0.064 Score=41.13 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=42.1
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+..|+..|..++ +.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 4 ~~~~il~~L~~~~--~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQYNA--KYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTTCT--TSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEE
Confidence 4567888998776 8999999999999 999999999999999999864
No 381
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=92.98 E-value=0.042 Score=38.75 Aligned_cols=63 Identities=13% Similarity=0.008 Sum_probs=46.3
Q ss_pred hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcch-HHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPII-LDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~-l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
++..|...+ .+.|..|||+.+++ ++.. +.++++-|...|++.... .|++ .-.+.+|+.+..+.
T Consensus 20 ~L~~l~~~~-~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~---~drR-~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKG-YEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEET---LSYR-VKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTT-CCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEE---EETT-EEEEEECHHHHHHH
T ss_pred HHHHHHhcC-CCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCC---CCCC-eEEEEECHhHHHHH
Confidence 455565553 26999999999999 9999 999999999999999431 1111 33477888776544
No 382
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=92.96 E-value=0.089 Score=40.48 Aligned_cols=68 Identities=19% Similarity=0.142 Sum_probs=48.8
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
++.++-.|...+ .+.+..+||+.+++ ++..+.++++-|...|+|+... ++.|++ .-...+|+.|..+.
T Consensus 33 q~~vL~~L~~~~-~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~-~~~DrR-~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 33 HWVTLYNINRLP-PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHT-SANDRR-AKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHHSC-TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECGGGHHHH
T ss_pred HHHHHHHHHHcC-CCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeec-CCCCCc-chhhhcCHHHHHHH
Confidence 344666676544 26788999999999 9999999999999999999763 122222 22477787776544
No 383
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=92.91 E-value=0.079 Score=43.20 Aligned_cols=72 Identities=15% Similarity=0.202 Sum_probs=51.5
Q ss_pred HHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424 35 MTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK 113 (266)
Q Consensus 35 ~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~ 113 (266)
.+|..-.++.|+..|.. + +.|+.+||+.+|+ +...+.+.|+.|...|+|.........|+..-.|++|+.+.
T Consensus 10 kaL~~~~rl~IL~~L~~-~--~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK-R--PYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHHHSHHHHHHHHHHHH-S--CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHhCCHHHHHHHHHHHh-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence 34444566677777865 4 8999999999999 99999999999999999997631101111234577776544
No 384
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=92.91 E-value=0.078 Score=37.83 Aligned_cols=60 Identities=10% Similarity=0.160 Sum_probs=49.5
Q ss_pred hhChhHHHhhcCCCCCCHHHHHh-hCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIAS-QLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~-~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
++.|+-.|...+ +.|..+||+ ..++ +...+.|-++.|...|+|+.. + ++ +.+|+.+..++
T Consensus 18 QfsiL~~L~~~~--~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~---~-----~D-l~LT~~G~~~l 78 (95)
T 1bja_A 18 TATILITIAKKD--FITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKS---G-----DG-LIITGEAQDII 78 (95)
T ss_dssp HHHHHHHHHHST--TBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEE---T-----TE-EEECHHHHHHH
T ss_pred HHHHHHHHHHCC--CCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecC---C-----CC-eeeCHhHHHHH
Confidence 455677788876 999999999 9999 999999999999999999932 1 44 88888777555
No 385
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=92.85 E-value=0.043 Score=38.78 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=40.9
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
++|..+||+.+++ +...+.+++.-|...|+|... .|++ ...|.+|+.+..+.
T Consensus 30 ~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~----~d~R-~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECE----LEGR-TKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE----EETT-EEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCC----CCCC-eEEEEEChhHHHHH
Confidence 3899999999999 999999999999999999432 1111 23588898776554
No 386
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=92.80 E-value=0.04 Score=44.96 Aligned_cols=67 Identities=19% Similarity=0.038 Sum_probs=50.2
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
++.|+..|...+ ++|..+||+.+++ +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus 50 q~~iL~~L~~~~--~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 50 EHHILWIAYQLN--GASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSK-RLNDKR-NTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHHT--SEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEEC-C-------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHCC--CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec-CCCCCc-eEEEEECHHHHHHH
Confidence 445777787766 8999999999999 9999999999999999999762 111221 22577888777555
No 387
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=92.77 E-value=0.078 Score=40.47 Aligned_cols=46 Identities=24% Similarity=0.420 Sum_probs=41.3
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
+..|+..|..++ +.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 7 d~~il~~L~~~~--~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 7 DLNIIEELKKDS--RLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHCS--CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 456888888776 8999999999999 999999999999999999854
No 388
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=92.76 E-value=0.06 Score=43.04 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=54.5
Q ss_pred HHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424 39 SATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP 117 (266)
Q Consensus 39 ~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~ 117 (266)
...+..|+..|...+.+++|..+||+.+++ +...+.++++-|...|+|+... ...|++ .-.+.+|+.|..+..
T Consensus 40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 40 TSRQYMTILSILHLPEEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIP-SPHDKR-AINVKVTDLGKKVMV 112 (189)
T ss_dssp CHHHHHHHHHHHHSCGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCSS-CEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHHHHHHHH
Confidence 345566788887522128999999999999 9999999999999999999763 112221 245788988887664
No 389
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=92.74 E-value=0.048 Score=44.80 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=44.6
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP 117 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~ 117 (266)
+++..+||+.+++ ++..+.++++-|...|+++..+ ...+.+|+.+..+..
T Consensus 20 ~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~~--------~~~i~LT~~G~~~~~ 69 (214)
T 3hrs_A 20 KITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKDK--------KAGYLLTDLGLKLVS 69 (214)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET--------TTEEEECHHHHHHHH
T ss_pred CcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEec--------CCCeEECHHHHHHHH
Confidence 8999999999999 9999999999999999999872 467999998886653
No 390
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=92.70 E-value=0.083 Score=37.79 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=42.9
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
+.+..+||+.+++ +...|.|+|.-|...|+|+... ..++ .+...+|+.+..++
T Consensus 36 ~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~--~~D~--R~~v~LT~~G~~~l 88 (96)
T 2obp_A 36 PWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSV--EADG--RGHASLTQEGAALA 88 (96)
T ss_dssp CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE--CTTS--CEEEEECHHHHHHH
T ss_pred CcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeec--CCCC--ceeEEECHHHHHHH
Confidence 7999999999999 9999999999999999999763 1344 33467787766543
No 391
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=92.65 E-value=0.08 Score=40.63 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=41.5
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+..|+..|...+ +.|..|||+.+|+ ++..+.+.++-|...|++...
T Consensus 8 ~~~~iL~~L~~~~--~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAADG--RATLSELATRAGL----SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHCT--TCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3556788888776 8999999999999 999999999999999999754
No 392
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=92.65 E-value=0.052 Score=40.48 Aligned_cols=47 Identities=11% Similarity=0.249 Sum_probs=40.5
Q ss_pred hhChhHHHhhcCCCC-CCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 42 ELGLLEIMAKASPTQ-LSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 42 ~lglfd~L~~~g~~~-~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
+..|+.+|.+.+ ++ +|+.|||+.+++ +...+.|.|..|...|+|...
T Consensus 28 e~~il~~L~~~~-~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 28 DLNVMKSFLNEP-DRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHST-TCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCC-CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 555777777654 25 899999999999 999999999999999999975
No 393
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=92.48 E-value=0.094 Score=40.23 Aligned_cols=43 Identities=33% Similarity=0.414 Sum_probs=37.3
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP 110 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~ 110 (266)
. |.++||+.+++ ++..++++|..|...|+|...+ | .|-|.++.
T Consensus 24 ~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~r-----G--~GGy~Lar 66 (145)
T 1xd7_A 24 T-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRA-----G--VPGASLKK 66 (145)
T ss_dssp C-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS-----S--SSSCEESS
T ss_pred C-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeec-----C--CCCceecC
Confidence 5 99999999999 9999999999999999999763 2 45587765
No 394
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=92.39 E-value=0.035 Score=42.60 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=45.8
Q ss_pred hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
++-.|.....+++|..+||+.+++ ++..+.++++-|...|+|+... +..|++ .-...+|+.|..+.
T Consensus 40 vL~~L~~~~~~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 40 ALVLLTFSKSGELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRP-NPNDGR-GTLATITDKGREVV 105 (147)
T ss_dssp HHHHHHTSGGGEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CC-----CEEEEECHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEee-cCCcCc-eeEEEECHHHHHHH
Confidence 455554322127999999999999 9999999999999999999763 111221 22367777766444
No 395
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=92.31 E-value=0.093 Score=40.86 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=41.7
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+..|+..|..++ ++|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 11 ~~~~il~~L~~~~--~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 11 TDIKILQVLQENG--RLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHHCT--TCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEeee
Confidence 3456888888876 8999999999999 999999999999999999854
No 396
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=92.30 E-value=0.12 Score=43.72 Aligned_cols=71 Identities=15% Similarity=0.103 Sum_probs=43.8
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHH--CCCCeE--EEeechHHHhhCCCC-CCc---eEEec-cCCCCCCCC-
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSK--YPQLRG--INFDLPHVLKHAPSC-PGV---EHVGG-DMFVEVPKG- 260 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~--~P~l~~--~v~Dlp~vi~~a~~~-~ri---~~~~g-D~f~~~P~~- 260 (266)
.+-+.+ -++...+|||+||+.|.++.-.+++ -..+++ +..|+| +...... +++ .+..| ||++.-|..
T Consensus 64 EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~--~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~ 140 (269)
T 2px2_A 64 WLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGH--EEPMLMQSYGWNIVTMKSGVDVFYKPSEIS 140 (269)
T ss_dssp HHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTS--CCCCCCCSTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccc--cCCCcccCCCceEEEeeccCCccCCCCCCC
Confidence 444443 2677899999999999999988886 322234 334541 1222211 455 55557 999844444
Q ss_pred CEEE
Q 046424 261 QAIF 264 (266)
Q Consensus 261 D~~~ 264 (266)
|+++
T Consensus 141 DvVL 144 (269)
T 2px2_A 141 DTLL 144 (269)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 8876
No 397
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=92.27 E-value=0.11 Score=39.94 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=41.7
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+..|+..|..++ +.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 10 ~d~~il~~L~~~~--~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 10 VDMQLVKILSENS--RLTYRELADILNT----TRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHHCT--TCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3556888888876 8999999999999 999999999999999999854
No 398
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=92.26 E-value=0.15 Score=39.49 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=53.3
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCC-CCCCCCcchHHHHHHHHhcCCccccccccC---CCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLP-TNNKKAPIILDRMLRLLASYSFLTCNLVSN---KDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~-~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~---~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|-..+....|+++|++.++ + +..-+.+.|+.|+..|+|++..... ..|+..-.|.+|+.+..++
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 566677877664322589999999999 8 9999999999999999999642100 1122334799999887655
Q ss_pred C
Q 046424 117 P 117 (266)
Q Consensus 117 ~ 117 (266)
.
T Consensus 106 ~ 106 (151)
T 3u1d_A 106 R 106 (151)
T ss_dssp H
T ss_pred H
Confidence 3
No 399
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=92.20 E-value=0.14 Score=45.89 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=43.9
Q ss_pred CceEEEecCCccHHHHHHHHH-----------------CCCCeEEEeech-----------HH-HhhC-----CCCCC--
Q 046424 202 LNQLVDVAGGLGANLKSIVSK-----------------YPQLRGINFDLP-----------HV-LKHA-----PSCPG-- 245 (266)
Q Consensus 202 ~~~vvDVGGG~G~~~~~l~~~-----------------~P~l~~~v~Dlp-----------~v-i~~a-----~~~~r-- 245 (266)
.-+|+|+||++|.....++.. .|+++++.-||| +- .+.+ ...+.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 688999999999988877766 588889999998 11 1111 11111
Q ss_pred ceEEeccCCC-CCCCC--CEEE
Q 046424 246 VEHVGGDMFV-EVPKG--QAIF 264 (266)
Q Consensus 246 i~~~~gD~f~-~~P~~--D~~~ 264 (266)
+.-++|.|+. -+|.+ |+++
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~ 154 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLH 154 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEE
T ss_pred EEecchhhhhccCCCCceEEEE
Confidence 4557889998 68876 7764
No 400
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=92.16 E-value=0.089 Score=40.47 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=41.7
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+..|+..|..++ +.|..+||+.+|+ ++..+.+.++-|...|++...
T Consensus 8 ~~~~il~~L~~~~--~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 8 IDKKIIKILQNDG--KAPLREISKITGL----AESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHHCT--TCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 3556888888876 8999999999999 999999999999999999864
No 401
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=91.97 E-value=0.11 Score=40.65 Aligned_cols=47 Identities=13% Similarity=0.190 Sum_probs=42.3
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+..|+.+|.+++ ++|..+||+.+|+ ++..+.+-++-|...|++...
T Consensus 4 ~d~~il~~L~~~~--~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDS--TLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCS--CSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeec
Confidence 4567889998876 8999999999999 999999999999999999853
No 402
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=91.96 E-value=0.047 Score=43.18 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=48.5
Q ss_pred HhhChhHHHhhcCC-CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASP-TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~-~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.++.|+..|...++ .++|..+||+.+++ +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERRE-DERDRR-SASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence 34557888877651 12999999999999 9999999999999999999762 111111 22366777665443
No 403
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=91.91 E-value=0.12 Score=48.64 Aligned_cols=65 Identities=15% Similarity=0.062 Sum_probs=48.8
Q ss_pred CCceEEEecCCccHHHHHHHHHC---CCCeEEEeechH-HHhhCCCC--------CCceEEeccCCC-CCC---C-C-CE
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKY---PQLRGINFDLPH-VLKHAPSC--------PGVEHVGGDMFV-EVP---K-G-QA 262 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~---P~l~~~v~Dlp~-vi~~a~~~--------~ri~~~~gD~f~-~~P---~-~-D~ 262 (266)
...+|+|.+||+|.++.++++.. +..+.+++|+.. .+..++.+ +++.+..+|.+. ++| . . |+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45799999999999999999885 467889999954 55444421 467899999998 444 2 3 88
Q ss_pred EEe
Q 046424 263 IFM 265 (266)
Q Consensus 263 ~~l 265 (266)
|+.
T Consensus 301 Iva 303 (542)
T 3lkd_A 301 VLM 303 (542)
T ss_dssp EEE
T ss_pred EEe
Confidence 874
No 404
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=91.89 E-value=0.1 Score=39.47 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=40.4
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
+..|+..|..++ +.|..+||+.+|+ ++..+.+.++.|...|++...
T Consensus 6 ~~~il~~L~~~~--~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 6 DKIILEILEKDA--RTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHHCT--TCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEecc
Confidence 456778887765 8999999999999 999999999999999999854
No 405
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=91.84 E-value=0.11 Score=36.79 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=40.4
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
++.|+..|.+.|...++..|||+++++ +..-+.++|+.|...|++...
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 345677777644347999999999999 999999999999999999954
No 406
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=91.79 E-value=0.12 Score=40.86 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=42.2
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+..|+..|..++ ..|..|||+++|+ ++..+.+-++-|...|++...
T Consensus 28 ~d~~IL~~L~~~~--~~s~~eLA~~lgl----S~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQNDG--KAPLREISKITGL----AESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHCT--TCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 4567888898876 8999999999999 999999999999999999854
No 407
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.75 E-value=0.096 Score=37.21 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=32.8
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
+.|..|||+.+|+ +...+.+.|+.|...|++...
T Consensus 36 ~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 36 PITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 8999999999999 999999999999999999976
No 408
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=91.67 E-value=0.11 Score=38.96 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=32.3
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
..|..+||+.+++ ++..+.+.++.|...|+++..
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 4799999999999 999999999999999999976
No 409
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=91.60 E-value=0.11 Score=37.64 Aligned_cols=47 Identities=26% Similarity=0.383 Sum_probs=38.6
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+.|+..|...| .++|..+||+.+|+ +...+++.|..|...|+|...
T Consensus 20 ~l~Il~~l~~~g-~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKG-TEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHC-SCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 345666664333 27899999999999 999999999999999999865
No 410
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=91.60 E-value=0.1 Score=40.09 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=41.6
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+..|+..|.+++ +.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 9 ~d~~il~~L~~~~--~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 9 LDRGILEALMGNA--RTAYAELAKQFGV----SPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHHHCT--TSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcceE
Confidence 3456888888876 8999999999999 999999999999999999954
No 411
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=91.51 E-value=0.13 Score=40.64 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=41.6
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+..|+..|..++ +.|..|||+.+|+ ++..+.+.++-|...|++...
T Consensus 18 ~d~~IL~~L~~~~--~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKKDA--RLTISELSEQLKK----PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHCT--TCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 3456888898876 8999999999999 999999999999999999853
No 412
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=91.42 E-value=0.069 Score=36.52 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=40.1
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+..|+.+|...+ +.|..||++.++...+.++.-+.++|+-|...|+|...
T Consensus 10 ~e~~vL~~L~~~~--~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKHS--SINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTSS--SEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 3556777787655 89999999999730001788999999999999999976
No 413
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=91.39 E-value=0.19 Score=37.12 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=53.9
Q ss_pred HHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC------CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceec
Q 046424 35 MTIKSATELGLLEIMAKASPTQLSSSEIASQL------PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGL 108 (266)
Q Consensus 35 ~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~------~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~ 108 (266)
+.++-..++-|+..|... |.+.-+|++.+ ++ ++..+...|+-|...|+|+........|...-.|++
T Consensus 6 ~l~~g~l~~~IL~lL~~~---p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~L 78 (117)
T 4esf_A 6 EMLKGSLEGCVLEIISRR---ETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSL 78 (117)
T ss_dssp HHHHHHHHHHHHHHHHHS---CBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEE
T ss_pred HHHHChHHHHHHHHHHcC---CCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEE
Confidence 445555667777788764 89999999997 67 899999999999999999975211011222345999
Q ss_pred chhccccc
Q 046424 109 TPVSKYFV 116 (266)
Q Consensus 109 t~~s~~l~ 116 (266)
|+.|+..+
T Consensus 79 T~~G~~~l 86 (117)
T 4esf_A 79 NEAGRQEL 86 (117)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99887544
No 414
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=91.37 E-value=0.066 Score=44.70 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=51.7
Q ss_pred HHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccC-CCCccccceecchhcc
Q 046424 35 MTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSN-KDGSVQRLYGLTPVSK 113 (266)
Q Consensus 35 ~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~-~~~~~~~~y~~t~~s~ 113 (266)
.+|.--.++.|+..|.. + |.|+.+||+.+|+ ++..+.+.|+.|...|+|......+ ..|+..-.|++++.+.
T Consensus 7 kaL~~~~R~~IL~~L~~-g--~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 7 YILGNKVRRDLLSHLTC-M--ECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS 79 (232)
T ss_dssp HHHTSHHHHHHHHHHTT-T--TTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred HHhCCHHHHHHHHHHHh-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence 34444567778888875 4 8999999999999 9999999999999999999721111 0111122488887554
No 415
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=91.24 E-value=0.1 Score=37.47 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=40.5
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
+..|+..|-+.| ++|..||++.++...+.++.-+.++|+-|...|+|+..
T Consensus 37 e~~VL~~L~~~~--~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 37 ELIVMRVIWSLG--EARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp CSHHHHHHHHHS--CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHhCC--CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 456788887766 89999999999851111577899999999999999986
No 416
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=91.15 E-value=0.18 Score=49.43 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=45.9
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCC---CeEEEeech-HHHhhC--C----C------CCCceEEeccCCCC--CCC-
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQ---LRGINFDLP-HVLKHA--P----S------CPGVEHVGGDMFVE--VPK- 259 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~---l~~~v~Dlp-~vi~~a--~----~------~~ri~~~~gD~f~~--~P~- 259 (266)
+....+|+|.|||+|.++.+++++.++ .+.+++|+. ..++.+ + . .+...+...|++.+ .+.
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~ 398 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFA 398 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGT
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccC
Confidence 335679999999999999999998873 578999985 355444 1 1 12245667777762 222
Q ss_pred C-CEEEe
Q 046424 260 G-QAIFM 265 (266)
Q Consensus 260 ~-D~~~l 265 (266)
. |+++.
T Consensus 399 kFDVVIg 405 (878)
T 3s1s_A 399 NVSVVVM 405 (878)
T ss_dssp TEEEEEE
T ss_pred CCCEEEE
Confidence 3 88764
No 417
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=91.04 E-value=0.14 Score=48.11 Aligned_cols=73 Identities=15% Similarity=0.046 Sum_probs=48.8
Q ss_pred HHHHccCCCCCceEEEecCCccHHHHHHHHHCC------------------CCeEEEeech-HHHhhCCC------CCC-
Q 046424 192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYP------------------QLRGINFDLP-HVLKHAPS------CPG- 245 (266)
Q Consensus 192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P------------------~l~~~v~Dlp-~vi~~a~~------~~r- 245 (266)
+++.+. -....+|+|.+||+|.++..+.+... ..+++++|+. ..+..++. .+.
T Consensus 161 mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~ 239 (541)
T 2ar0_A 161 IIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 239 (541)
T ss_dssp HHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB
T ss_pred HHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc
Confidence 344443 33457999999999999998877532 2468999984 45554432 132
Q ss_pred ----ceEEeccCCC-C-CC-CC-CEEEe
Q 046424 246 ----VEHVGGDMFV-E-VP-KG-QAIFM 265 (266)
Q Consensus 246 ----i~~~~gD~f~-~-~P-~~-D~~~l 265 (266)
+.+..+|.+. + .+ .. |+++.
T Consensus 240 ~~~~~~I~~gDtL~~~~~~~~~fD~Vv~ 267 (541)
T 2ar0_A 240 LDHGGAIRLGNTLGSDGENLPKAHIVAT 267 (541)
T ss_dssp GGGTBSEEESCTTSHHHHTSCCEEEEEE
T ss_pred ccccCCeEeCCCcccccccccCCeEEEE
Confidence 7889999998 3 22 23 88874
No 418
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=91.02 E-value=0.066 Score=50.34 Aligned_cols=63 Identities=17% Similarity=0.125 Sum_probs=44.4
Q ss_pred ceEEEecCCccHHHHHHHHHCC---------------CCeEEEeech-HHHhhCCCC-------CCceEEeccCCC-C-C
Q 046424 203 NQLVDVAGGLGANLKSIVSKYP---------------QLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFV-E-V 257 (266)
Q Consensus 203 ~~vvDVGGG~G~~~~~l~~~~P---------------~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~-~-~ 257 (266)
.+|+|.+||+|.++.++.+..+ ..+.+++|+. ..+..++.+ .+|.+..+|.+. + .
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 4999999999999998866543 5678999994 455554431 345558899887 3 3
Q ss_pred CC-C-CEEEe
Q 046424 258 PK-G-QAIFM 265 (266)
Q Consensus 258 P~-~-D~~~l 265 (266)
+. . |+|+.
T Consensus 326 ~~~~fD~Iv~ 335 (544)
T 3khk_A 326 PDLRADFVMT 335 (544)
T ss_dssp TTCCEEEEEE
T ss_pred ccccccEEEE
Confidence 33 3 88874
No 419
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=90.78 E-value=0.046 Score=40.24 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=39.2
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCC----CCCCCCcchHHHHHHHHhcCCccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLP----TNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~----~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
+..|+..|...+ +.|..+||+.++ + ++..+.++|+-|...|+|...
T Consensus 12 ~~~vL~~l~~~~--~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 12 EWEVMNIIWMKK--YASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHHS--SEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhCC--CcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEE
Confidence 445666676655 899999999999 6 788999999999999999976
No 420
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=90.73 E-value=0.68 Score=39.46 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=26.9
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL 233 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl 233 (266)
++...+|||+|||.|.++.-+++..|-.+++.+|+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dV 106 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTL 106 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEE
Confidence 55667999999999999998888766545444444
No 421
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=90.58 E-value=0.29 Score=43.44 Aligned_cols=65 Identities=22% Similarity=0.348 Sum_probs=43.4
Q ss_pred CCCceEEEecCCccHHHHHHHHH----------------CCCCeEEEeechH-----HHhhCCC---CCC---ceEEecc
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSK----------------YPQLRGINFDLPH-----VLKHAPS---CPG---VEHVGGD 252 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~----------------~P~l~~~v~Dlp~-----vi~~a~~---~~r---i~~~~gD 252 (266)
.+.-+|+|+||++|..+..++.. .|+++++.-|||. +...... ..+ +.-++|.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 35678999999999755443332 6788889999983 3333321 012 4557899
Q ss_pred CCC-CCCCC--CEEE
Q 046424 253 MFV-EVPKG--QAIF 264 (266)
Q Consensus 253 ~f~-~~P~~--D~~~ 264 (266)
|+. -+|.+ |+++
T Consensus 130 Fy~rlfp~~S~d~v~ 144 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIH 144 (359)
T ss_dssp SSSCCSCTTCBSCEE
T ss_pred hhhccCCCCceEEEE
Confidence 998 68876 7664
No 422
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=90.48 E-value=0.34 Score=36.75 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=39.4
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS 112 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s 112 (266)
..|.++||+.+|+ ++..+.+++.-|...|+++.......+|.-...|.++|+-
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~ 103 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLW 103 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHH
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHH
Confidence 6899999999999 9999999999999999999742111112112456666543
No 423
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=90.44 E-value=0.27 Score=42.08 Aligned_cols=43 Identities=19% Similarity=0.027 Sum_probs=33.1
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP 234 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 234 (266)
.+.+.+- +....+|||+|||.|.++.-+++..|-..++.+|+-
T Consensus 81 ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG 123 (282)
T 3gcz_A 81 WMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLG 123 (282)
T ss_dssp HHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred HHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEec
Confidence 4445553 666779999999999999998888776666777773
No 424
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=90.40 E-value=0.33 Score=35.65 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=53.5
Q ss_pred HHHHHHhhChhHHHhhcCCCCCCHHHHHhhCC--------CCCCCCc-chHHHHHHHHhcCCccccccccCCCCccccce
Q 046424 36 TIKSATELGLLEIMAKASPTQLSSSEIASQLP--------TNNKKAP-IILDRMLRLLASYSFLTCNLVSNKDGSVQRLY 106 (266)
Q Consensus 36 ~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~--------~~~~~~~-~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y 106 (266)
.+....++-|+..|... |.+..+|++.+. + ++ ..+.+.|+-|...|+|+...... +|...-.|
T Consensus 9 ~~~~~~~~~IL~~L~~~---~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~-~~~~r~~Y 80 (118)
T 2esh_A 9 FRGWWLASTILLLVAEK---PSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTT-VSPPRKIY 80 (118)
T ss_dssp HHHHHHHHHHHHHHHHS---CBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECS-SSSCEEEE
T ss_pred cccchHHHHHHHHHHcC---CCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecC-CCCCceEE
Confidence 34455667788888763 899999999883 6 88 89999999999999998763110 12123458
Q ss_pred ecchhccccc
Q 046424 107 GLTPVSKYFV 116 (266)
Q Consensus 107 ~~t~~s~~l~ 116 (266)
++|+.+..++
T Consensus 81 ~LT~~G~~~l 90 (118)
T 2esh_A 81 RITPQGKLYL 90 (118)
T ss_dssp EECHHHHHHH
T ss_pred EEChHHHHHH
Confidence 9999887554
No 425
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=90.25 E-value=0.17 Score=42.58 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=51.2
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
.+..|+..|...++.++|..|||+.+++ ++..+.++++-|...|+|+..+ +..|++ .-...+|+.|..+.
T Consensus 159 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~-~~~DrR-~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 159 VEFTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKER-STEDER-KILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEE-CSSSTT-CEEEECCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeC-CCCCCC-eEEEEECHHHHHHH
Confidence 3455777887654225999999999999 9999999999999999999863 112222 23366777666544
No 426
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=90.23 E-value=0.22 Score=40.12 Aligned_cols=49 Identities=12% Similarity=0.251 Sum_probs=42.9
Q ss_pred HHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 38 KSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 38 ~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
....+..|+..|.. | +.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 18 ~d~~~~~IL~~L~~-~--~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLRN-K--EMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHTT-C--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHc-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 34566778888974 5 8999999999999 999999999999999999875
No 427
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=90.18 E-value=0.27 Score=36.16 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=54.4
Q ss_pred HHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC--------CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccc
Q 046424 34 PMTIKSATELGLLEIMAKASPTQLSSSEIASQL--------PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRL 105 (266)
Q Consensus 34 ~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~--------~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~ 105 (266)
++.++-..++-|+..|.+. |.+--+|.+.+ ++ ++..+.+.|+-|...|+|+.......+|...-.
T Consensus 6 ~~~~~g~l~~~IL~~L~~~---~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~ 78 (116)
T 3f8b_A 6 KEMLRAQTNVILLNVLKQG---DNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRKY 78 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHC---CBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEEE
T ss_pred HHHHhchHHHHHHHHHHhC---CCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCceE
Confidence 4455566777788888774 89999999887 56 899999999999999999965211011222445
Q ss_pred eecchhccccc
Q 046424 106 YGLTPVSKYFV 116 (266)
Q Consensus 106 y~~t~~s~~l~ 116 (266)
|++|+.++..+
T Consensus 79 Y~LT~~G~~~l 89 (116)
T 3f8b_A 79 YRLTEIGHENM 89 (116)
T ss_dssp EEECHHHHHHH
T ss_pred EEECHHHHHHH
Confidence 89998887544
No 428
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=89.49 E-value=0.23 Score=44.13 Aligned_cols=77 Identities=14% Similarity=0.241 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccC-CCCccccceecch
Q 046424 32 VLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSN-KDGSVQRLYGLTP 110 (266)
Q Consensus 32 ~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~-~~~~~~~~y~~t~ 110 (266)
..+.+++..-+..|++.|. .+ ++|..|||+.+|+ +..-+.++++-|...|++.+..... ..|+..-.|++++
T Consensus 12 ~~~~~~~~~~~~~il~~l~-~~--~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~ 84 (380)
T 2hoe_A 12 HMPKSVRAENISRILKRIM-KS--PVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISP 84 (380)
T ss_dssp ----------CCCSHHHHH-HS--CBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECG
T ss_pred cCchhHHHHHHHHHHHHHH-cC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEcc
Confidence 4566777778888999999 76 9999999999999 9999999999999999999863111 1133344477777
Q ss_pred hcccc
Q 046424 111 VSKYF 115 (266)
Q Consensus 111 ~s~~l 115 (266)
-..++
T Consensus 85 ~~~~~ 89 (380)
T 2hoe_A 85 NCAYV 89 (380)
T ss_dssp GGCEE
T ss_pred CCCeE
Confidence 65543
No 429
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=89.30 E-value=0.16 Score=38.81 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=40.7
Q ss_pred hhChhHHHhhcCC---CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 42 ELGLLEIMAKASP---TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 42 ~lglfd~L~~~g~---~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
+..++..|...++ +++|..|||+.+++ ++..+.++++-|...|+|+... +.|++ .-...+|+.|..++
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~~--~~DrR-~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVMA--GADAR-CKRIELTAKGRAAL 105 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC--------------CCBCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeC--CCCCC-eeEEEECHHHHHHH
Confidence 3345566654321 26899999999999 9999999999999999996431 22222 22356666665443
No 430
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=89.21 E-value=0.17 Score=38.01 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=37.6
Q ss_pred ChhHHHh-hcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 44 GLLEIMA-KASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 44 glfd~L~-~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.++..|. ..+ ++|..|||+.+|+ +...+.++++-|...|+++..
T Consensus 30 ~il~~L~~~~~--~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 30 AVYAILYLSDK--PLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHCSS--CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3566664 234 8999999999999 999999999999999999975
No 431
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=88.90 E-value=0.51 Score=40.71 Aligned_cols=73 Identities=14% Similarity=0.110 Sum_probs=47.2
Q ss_pred HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHh----hCCCC--CCceEEec-cCCCCCCC-CCE
Q 046424 191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLK----HAPSC--PGVEHVGG-DMFVEVPK-GQA 262 (266)
Q Consensus 191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~----~a~~~--~ri~~~~g-D~f~~~P~-~D~ 262 (266)
.+.+.+. +.....|||+||+.|.++.-++....-.+++.+|+-..-- ..+.. .-|+++.+ |++.--|. .|+
T Consensus 85 ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~D~ 163 (321)
T 3lkz_A 85 WLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECCDT 163 (321)
T ss_dssp HHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCCSE
T ss_pred HHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCCCE
Confidence 3444444 5566799999999999999777776655789999843210 01111 34888888 87762222 477
Q ss_pred EE
Q 046424 263 IF 264 (266)
Q Consensus 263 ~~ 264 (266)
++
T Consensus 164 iv 165 (321)
T 3lkz_A 164 LL 165 (321)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 432
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=88.88 E-value=0.3 Score=36.02 Aligned_cols=76 Identities=17% Similarity=0.200 Sum_probs=54.3
Q ss_pred HHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC------CCCCCCCcchHHHHHHHHhcCCccccccccCCCCcccccee
Q 046424 34 PMTIKSATELGLLEIMAKASPTQLSSSEIASQL------PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYG 107 (266)
Q Consensus 34 ~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~------~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~ 107 (266)
++.++-..++-|+..|... |.+--+|++.+ ++ ++..+...|+-|...|+++.......+|...-.|+
T Consensus 7 ~~l~~g~l~~~IL~lL~~~---p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~ 79 (116)
T 3hhh_A 7 TELLKGILEGLVLAIIQRK---ETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYR 79 (116)
T ss_dssp HHHHTTHHHHHHHHHHHHS---CBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEE
T ss_pred HHHHhhhHHHHHHHHHhcC---CCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence 3445555666678888764 89999999987 57 89999999999999999986521111122234599
Q ss_pred cchhccccc
Q 046424 108 LTPVSKYFV 116 (266)
Q Consensus 108 ~t~~s~~l~ 116 (266)
+|+.++..+
T Consensus 80 lT~~G~~~l 88 (116)
T 3hhh_A 80 LTSSGEAEL 88 (116)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 998887544
No 433
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=88.74 E-value=0.16 Score=37.47 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=55.7
Q ss_pred HHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCC------CCCCCCcchHHHHHHHHhcCCccccccccCCCCcccccee
Q 046424 34 PMTIKSATELGLLEIMAKASPTQLSSSEIASQLP------TNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYG 107 (266)
Q Consensus 34 ~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~------~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~ 107 (266)
++.++-..++-|+..|... |.+.-+|++.+. + ++..+.+.|+-|...|+++........|...-.|+
T Consensus 8 ~~l~~g~l~~~IL~lL~~~---p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~ 80 (117)
T 3elk_A 8 ERILHGLITLYILKELVKR---PMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYH 80 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHS---CEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEE
T ss_pred HHHHhhHHHHHHHHHHHcC---CCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence 3455566677788888764 899999999886 6 78899999999999999996521011122234699
Q ss_pred cchhcccccC
Q 046424 108 LTPVSKYFVP 117 (266)
Q Consensus 108 ~t~~s~~l~~ 117 (266)
+|+.++..+.
T Consensus 81 lT~~G~~~l~ 90 (117)
T 3elk_A 81 ITDAGKKFLC 90 (117)
T ss_dssp ECHHHHHHHH
T ss_pred ECHHHHHHHH
Confidence 9998875553
No 434
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=88.72 E-value=0.24 Score=33.56 Aligned_cols=51 Identities=6% Similarity=-0.036 Sum_probs=39.9
Q ss_pred HHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecc
Q 046424 47 EIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLT 109 (266)
Q Consensus 47 d~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t 109 (266)
+.|.+++ ..|+.+||.++|+ +...+.|+|.-|...|.|.... | ....|..+
T Consensus 22 ~~L~~~~--~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~~-----~-~PP~W~~~ 72 (75)
T 1sfu_A 22 LSLNTND--YTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMVP-----S-NPPKWFKN 72 (75)
T ss_dssp HTSCTTC--EECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC-----C-SSCEEEEC
T ss_pred HhCCCCc--chHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecCC-----C-CCCCccCC
Confidence 3455542 5999999999999 9999999999999999998762 1 15566655
No 435
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=88.24 E-value=0.23 Score=31.60 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=40.5
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTC 92 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~ 92 (266)
|-.|++.+.++| +-+.++.+++..|+ +.+.+..+|+-|...|++.-
T Consensus 12 e~~lL~yIr~sG-GildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 12 ERELLDYIVNNG-GFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHHTT-SEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcC-CEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence 445788888876 48999999999999 99999999999999999874
No 436
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=87.98 E-value=0.68 Score=35.32 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=40.5
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQL-----PTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~-----~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+.-|++.|.+.+ .+.|++||.+.+ ++ +..-+.|.|+.|...|++.+.
T Consensus 23 qR~~Il~~L~~~~-~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 23 QRHAILEYLVNSM-AHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp HHHHHHHHHHHCS-SCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEE
Confidence 4455889997643 389999999999 56 888999999999999999986
No 437
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=87.69 E-value=0.32 Score=34.62 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=38.3
Q ss_pred HHHHhhChhH-HHhhcCCCCC-CHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 38 KSATELGLLE-IMAKASPTQL-SSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 38 ~~a~~lglfd-~L~~~g~~~~-t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.-.+...|.+ .+..+. .+ |..+||+.+|+ +...+++.|+.|...|+++..
T Consensus 17 ~~~i~~~I~~~~l~~g~--~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 17 ATHFRTLIKSGELAPGD--TLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHTTTTSCCTTS--BCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHhCCCCCcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 3334444554 333332 56 99999999999 999999999999999999876
No 438
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=87.58 E-value=0.38 Score=38.34 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=46.1
Q ss_pred HHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCc-cccccccCCCCccccceecchh
Q 046424 40 ATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSF-LTCNLVSNKDGSVQRLYGLTPV 111 (266)
Q Consensus 40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~-l~~~~~~~~~~~~~~~y~~t~~ 111 (266)
-....|...|.+.+ +++|..|||+.+|+ +.+-+.|-+..|...|+ +... .+.|.+++.
T Consensus 21 ~R~~~Il~~L~~~~-~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~~---------~~Gy~l~~~ 79 (187)
T 1j5y_A 21 ERLKSIVRILERSK-EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT---------PRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHCS-SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE---------TTEEECCTT
T ss_pred HHHHHHHHHHHHcC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE---------CCEEEECCc
Confidence 45567888997643 27999999999999 99999999999999999 6643 344777653
No 439
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=87.57 E-value=0.39 Score=36.00 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=42.0
Q ss_pred HHHhhChhHHHhhcCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 39 SATELGLLEIMAKASPTQLSSSEIASQL-----PTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 39 ~a~~lglfd~L~~~g~~~~t~~elA~~~-----~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
+-.+.-|++.|.+.+ ++.|++||.+.+ ++ +..-+.|.|+.|...|++.+.
T Consensus 10 T~qR~~Il~~l~~~~-~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 10 TRQRAAISTLLETLD-DFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHCC-SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEE
Confidence 345667888887653 389999999998 66 888999999999999999976
No 440
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=87.12 E-value=0.66 Score=40.25 Aligned_cols=75 Identities=19% Similarity=0.190 Sum_probs=51.4
Q ss_pred HHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeechHHHhhCC---------CCCCc
Q 046424 177 FNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLPHVLKHAP---------SCPGV 246 (266)
Q Consensus 177 f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp~vi~~a~---------~~~ri 246 (266)
++..+...+...-..+..... .+...||++|||-=..+.++. +| +++++-+|+|.|++..+ ..++.
T Consensus 80 ~~~~~~~Rt~~~d~~v~~~~~--~g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~ 155 (310)
T 2uyo_A 80 MRSYQAVRTNFFDTYFNNAVI--DGIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADR 155 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hCCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCe
Confidence 444555555443222222221 356789999999999877775 35 48899999999988633 23678
Q ss_pred eEEeccCCC
Q 046424 247 EHVGGDMFV 255 (266)
Q Consensus 247 ~~~~gD~f~ 255 (266)
.+++.|+.+
T Consensus 156 ~~v~~Dl~d 164 (310)
T 2uyo_A 156 REVPIDLRQ 164 (310)
T ss_dssp EEEECCTTS
T ss_pred EEEecchHh
Confidence 999999986
No 441
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=86.95 E-value=2.7 Score=37.58 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHH---C----CCCeEEEeechHHHh
Q 046424 171 ERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSK---Y----PQLRGINFDLPHVLK 238 (266)
Q Consensus 171 p~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~---~----P~l~~~v~Dlp~vi~ 238 (266)
|++...|-+.++.+-.. .| .... ....-.||++|+|+|.++..+++. + ..++.+++|..+...
T Consensus 55 peis~~FGe~la~~~~~---~w-~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr 124 (387)
T 1zkd_A 55 PEISQMFGELLGLWSAS---VW-KAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLR 124 (387)
T ss_dssp HHHCHHHHHHHHHHHHH---HH-HHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHH
T ss_pred CchHHHHHHHHHHHHHH---HH-HHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHH
Confidence 56666776666554321 11 2222 334568999999999999988865 3 345788898865444
No 442
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=86.89 E-value=0.31 Score=40.19 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=43.8
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP 117 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~ 117 (266)
+.|..++|+.+++ +...+.+.++.|...|+|++.+.. . ...+.+|+.|..+..
T Consensus 27 ~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~~---R--~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 27 YLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTK---R--GQILNITEKGLDVLY 79 (230)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEET---T--EEEEEECHHHHHHHH
T ss_pred CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEcC---C--eEEEEECHHHHHHHH
Confidence 6899999999999 999999999999999999986210 0 456888988876664
No 443
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=86.84 E-value=0.32 Score=44.40 Aligned_cols=68 Identities=22% Similarity=0.234 Sum_probs=49.3
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYF 115 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l 115 (266)
+..|+..|.+.+.+++|..|||+.+++ +...+.|+++-|...|+|++.+. ..|.| .-...+|+.++.+
T Consensus 406 q~~vl~~l~~~~~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~~-~~D~R-~~~i~lT~~g~~~ 473 (487)
T 1hsj_A 406 EIYILNHILRSESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRS-LQDER-TVIVYVTDTQKAN 473 (487)
T ss_dssp HHHHHHHHHTCSCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEEC-CSSSS-CCEEECCSSHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCC-CCCCC-eEEEEECHHHHHH
Confidence 345777887761128999999999999 99999999999999999998631 12221 2335666655543
No 444
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=86.42 E-value=0.28 Score=37.70 Aligned_cols=74 Identities=14% Similarity=0.229 Sum_probs=52.1
Q ss_pred HHHHHHhhChhHHHhhcCCCCCCHHHHHhhC--------CCCCCCCcchHHHHHHHHhcCCccccccccCCCCcccccee
Q 046424 36 TIKSATELGLLEIMAKASPTQLSSSEIASQL--------PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYG 107 (266)
Q Consensus 36 ~L~~a~~lglfd~L~~~g~~~~t~~elA~~~--------~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~ 107 (266)
.+.--.++-|+..|.+ + +.+..||++.+ ++ ++..+.+.|+-|...|+|+.......++...-.|+
T Consensus 37 ~~~g~~~~~IL~~L~~-~--~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~ 109 (145)
T 1xma_A 37 VIRGYVDTIILSLLIE-G--DSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYR 109 (145)
T ss_dssp SGGGTHHHHHHHHHHH-C--CEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEE
T ss_pred HhcCcHHHHHHHHHHh-C--CCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEE
Confidence 3344466777778876 3 89999988887 57 89999999999999999986531100111234589
Q ss_pred cchhccccc
Q 046424 108 LTPVSKYFV 116 (266)
Q Consensus 108 ~t~~s~~l~ 116 (266)
+|+.++.++
T Consensus 110 LT~~G~~~l 118 (145)
T 1xma_A 110 ITPEGIKYY 118 (145)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 998877554
No 445
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=86.00 E-value=0.54 Score=37.69 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=34.9
Q ss_pred HHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 48 IMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 48 ~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+.+.| .|.|..|||+.+|+ +...+.+.|+.|...|++...
T Consensus 17 ~~~~~g-~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 17 FIEKNG-YPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHS-SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHhC-CCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence 344444 38999999999999 777899999999999999976
No 446
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.89 E-value=0.31 Score=34.67 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=43.4
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
-|.-|+..+.++|+.+++..||+.++++ +...+.++|..|...+++...
T Consensus 38 ~E~lVy~~I~~aGn~GIw~kdL~~~tnL----~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 38 QEKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCEEEe
Confidence 4556788888877668999999999999 999999999999999999976
No 447
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=85.38 E-value=1.2 Score=28.31 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=42.3
Q ss_pred hHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424 46 LEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP 110 (266)
Q Consensus 46 fd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~ 110 (266)
+..|.+-. .++|+.|+|+..+. +....+..|..|.+.|-+.+. ..+|++.|
T Consensus 9 Lall~s~~-QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKR---------sSRYrlkp 59 (68)
T 3i71_A 9 LALLTSVR-QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKR---------SSRYRLKP 59 (68)
T ss_dssp HHHHHHCT-TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------CCEEEECC
T ss_pred HHHHHHHh-ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhh---------ccccccCc
Confidence 44555433 37999999999999 888999999999999999987 57898876
No 448
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=85.15 E-value=0.35 Score=39.93 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=41.3
Q ss_pred CHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424 58 SSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP 117 (266)
Q Consensus 58 t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~ 117 (266)
+..+||+.+++ +...+.++++-|...|+++... +..+.+|+.+..+..
T Consensus 26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~~--------~~~v~LT~~G~~~~~ 73 (230)
T 1fx7_A 26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVAG--------DRHLELTEKGRALAI 73 (230)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT--------TSCEEECHHHHHHHH
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC--------CccEEECHHHHHHHH
Confidence 44999999999 9999999999999999999862 457899998876653
No 449
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=85.11 E-value=1.3 Score=37.86 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=31.5
Q ss_pred CCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCC
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAP 241 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~ 241 (266)
....|+|++||+|..+.++++. +.+++++|+.+ .++.++
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~ 274 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAK 274 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 4579999999999999998886 46899999964 555444
No 450
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=85.03 E-value=0.32 Score=35.72 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=40.6
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+..|+..|.+.| +.|..|||+.++...+.++.-+.++++-|...|+|...
T Consensus 11 ~q~~vL~~L~~~~--~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDKK--SVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHSS--SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 3556777777766 89999999999741111688999999999999999986
No 451
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=84.80 E-value=0.5 Score=34.10 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=50.2
Q ss_pred HHHHhhChhHHHhhcCCCCCCHHHHHhh----CCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424 38 KSATELGLLEIMAKASPTQLSSSEIASQ----LPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK 113 (266)
Q Consensus 38 ~~a~~lglfd~L~~~g~~~~t~~elA~~----~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~ 113 (266)
+-..++-|+..|... |.+..+|++. +++ ++..+.++|+-|...|+|+..... .+|...-.|++|+.+.
T Consensus 7 ~g~l~~~IL~~L~~~---~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~-~~~r~r~~y~LT~~G~ 78 (108)
T 3l7w_A 7 ALLIEYLILAIVSKH---DSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQE-HQGRRRKYYHLTDSGE 78 (108)
T ss_dssp HHHHHHHHHHHHHHS---CEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEE-ETTEEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHcC---CCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeec-CCCCcceEEEECHHHH
Confidence 334566677788764 7888777776 578 999999999999999999975311 1222133488998877
Q ss_pred ccc
Q 046424 114 YFV 116 (266)
Q Consensus 114 ~l~ 116 (266)
..+
T Consensus 79 ~~l 81 (108)
T 3l7w_A 79 KHL 81 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 452
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=84.75 E-value=0.68 Score=36.57 Aligned_cols=69 Identities=13% Similarity=0.274 Sum_probs=48.9
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhC--------CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQL--------PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS 112 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~--------~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s 112 (266)
.++-|+..|.. + |.+.-||++.+ ++ ++..+.+.|+-|...|+|+........+...-.|++|+.|
T Consensus 3 l~~~iL~lL~~-~--~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G 75 (179)
T 1yg2_A 3 LPHVILTVLST-R--DATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAG 75 (179)
T ss_dssp HHHHHHHHHHH-C--CBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHH
T ss_pred hHHHHHHHHhc-C--CCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHH
Confidence 34557778876 4 99999999998 46 8899999999999999999652110011113469999998
Q ss_pred cccc
Q 046424 113 KYFV 116 (266)
Q Consensus 113 ~~l~ 116 (266)
+..+
T Consensus 76 ~~~l 79 (179)
T 1yg2_A 76 RSAL 79 (179)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8543
No 453
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=84.64 E-value=0.46 Score=35.79 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=40.4
Q ss_pred HhhChhHHHhh-cCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAK-ASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~-~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+..|+.+|.. .+ ++|..||++.++...+.+..-+.++|+-|...|+|...
T Consensus 10 ~e~~vL~~L~~~~~--~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRTE--PQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCSS--CEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCC--CCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 45567777876 35 89999999999821011888999999999999999986
No 454
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=84.62 E-value=0.37 Score=35.40 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=49.4
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCC------CCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLP------TNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKY 114 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~------~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~ 114 (266)
.++-|+..|... |.+.-+|++.+. + ++..+.+.|+-|...|+|+.......+|...-.|++|+.++.
T Consensus 10 l~~~IL~~L~~~---~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~ 82 (115)
T 4esb_A 10 LEGCILYIISQE---EVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLE 82 (115)
T ss_dssp HHHHHHHHHHHS---CEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHH
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHH
Confidence 345567777764 899999998874 6 899999999999999999865211111222345999988875
Q ss_pred cc
Q 046424 115 FV 116 (266)
Q Consensus 115 l~ 116 (266)
.+
T Consensus 83 ~l 84 (115)
T 4esb_A 83 QL 84 (115)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 455
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=84.28 E-value=0.2 Score=44.17 Aligned_cols=61 Identities=8% Similarity=0.075 Sum_probs=0.0
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP 117 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~ 117 (266)
+..|+..|...+ ++|..|||+.+++ ++.-++|.|+.|...|+++.. .....+|+.++.+..
T Consensus 22 ~~~iL~~l~~~~--~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~~---------~~gi~LT~~G~~~~~ 82 (345)
T 2o0m_A 22 RFQILRNIYWMQ--PIGRRSLSETMGI----TERVLRTETDVLKQLNLIEPS---------KSGMTLTERGLEVYQ 82 (345)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---------ecceEEcHHHHHHHH
Confidence 456777887766 8999999999999 999999999999999999854 223667777665553
No 456
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=83.92 E-value=1 Score=34.02 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=46.5
Q ss_pred HHhhChhHHHhhcCCCCCCHHHHHhhCCCCC-CCCcchHHHHHHHHhcCCccccccccCCCCccccceecc
Q 046424 40 ATELGLLEIMAKASPTQLSSSEIASQLPTNN-KKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLT 109 (266)
Q Consensus 40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~-~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t 109 (266)
..+.-|++.|.+.+ ++.|++||.+.+.-.. ..+..-+.|.|..|...|++.+.. ..+| ..+|..+
T Consensus 14 ~qR~~Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~--~~~g--~~~Y~~~ 79 (139)
T 3mwm_A 14 RQRAAVSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLR--TAEG--ESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEE--CTTS--CEEEECC
T ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEE--cCCC--ceEEEEC
Confidence 35566889997753 3899999999983111 117888999999999999999863 1122 4567664
No 457
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=83.68 E-value=0.92 Score=40.92 Aligned_cols=72 Identities=11% Similarity=0.116 Sum_probs=52.9
Q ss_pred HHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccc-cc-CCCCccccceecchhccc
Q 046424 37 IKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNL-VS-NKDGSVQRLYGLTPVSKY 114 (266)
Q Consensus 37 L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~-~~-~~~~~~~~~y~~t~~s~~ 114 (266)
++..-+..|+..|...+ ++|..|||+.+|+ +..-+.++++-|...|++.+.. .. +..|+..-.|++++-+.+
T Consensus 36 ~r~~n~~~il~~l~~~~--~~sr~ela~~~gl----s~~tv~~~v~~L~~~gli~~~~~~~~s~~GR~~~~l~~~~~~~~ 109 (429)
T 1z05_A 36 IKQINAGRVYKLIDQKG--PISRIDLSKESEL----APASITKITRELIDAHLIHETTVQEAISRGRPAVGLQTNNLGWQ 109 (429)
T ss_dssp HHHHHHHHHHHHHHHHC--SBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECHHHHHHHTSCCEEEEECCTTEE
T ss_pred HHHHHHHHHHHHHHHcC--CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccccCCCCCCCCCeEEEECCCCCE
Confidence 44445556889998876 9999999999999 9999999999999999999852 00 001332344777765443
No 458
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=83.30 E-value=0.66 Score=35.62 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=40.1
Q ss_pred hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
-.|++.|. .| |.|..+||+++|+ +-....-.|..|.-.|++.+.
T Consensus 14 ~~ILE~Lk-~G--~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~V 57 (165)
T 2vxz_A 14 RDILALLA-DG--CKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRV 57 (165)
T ss_dssp HHHHHHHT-TC--CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHH-hC--CccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEE
Confidence 34788898 56 9999999999999 999999999999999999987
No 459
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=83.11 E-value=1 Score=38.45 Aligned_cols=33 Identities=12% Similarity=-0.125 Sum_probs=27.4
Q ss_pred CCceEEEecCCccHHHHHHHHHC-----CCCeEEEeec
Q 046424 201 GLNQLVDVAGGLGANLKSIVSKY-----PQLRGINFDL 233 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~~-----P~l~~~v~Dl 233 (266)
.+..||+||...|..++.+++.. |+-+++++|.
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~Dt 143 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADS 143 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEEC
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEEC
Confidence 46899999999999888876654 5888999994
No 460
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=83.10 E-value=1 Score=40.15 Aligned_cols=72 Identities=8% Similarity=0.094 Sum_probs=49.8
Q ss_pred HHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccccc--CCCCccccceecchhccc
Q 046424 37 IKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVS--NKDGSVQRLYGLTPVSKY 114 (266)
Q Consensus 37 L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~--~~~~~~~~~y~~t~~s~~ 114 (266)
++..-+..|+..|...+ ++|..|||+.+|+ +..-+.++++-|...|++.+.... +..|+..-.|++++-..+
T Consensus 13 ~r~~n~~~il~~l~~~~--~~sr~~la~~~~l----s~~tv~~~v~~L~~~g~i~~~~~~~~~~~GR~~~~l~~~~~~~~ 86 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQLG--PVSRIDLSRLAQL----APASITKIVHEMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWH 86 (406)
T ss_dssp HHHHHHHHHHHHHHSSC--SCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC-------------CEEECCTTCE
T ss_pred HHHhHHHHHHHHHHHcC--CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEeecccCCCCCCCCCeEEEEcCCccE
Confidence 34444455888998876 9999999999999 999999999999999999985211 001333334777765443
No 461
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=82.35 E-value=1.1 Score=34.38 Aligned_cols=50 Identities=22% Similarity=0.344 Sum_probs=42.0
Q ss_pred HHHhhChhHHHhhcCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 39 SATELGLLEIMAKASPTQLSSSEIASQL-----PTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 39 ~a~~lglfd~L~~~g~~~~t~~elA~~~-----~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
+..+.-|++.|.+.+ .+.|++||.+.+ ++ +..-+.|.|+.|...|++.+.
T Consensus 26 T~qR~~IL~~l~~~~-~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 26 SKQREEVVSVLYRSG-THLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp HHHHHHHHHHHHHCS-SCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEE
Confidence 445566899997753 389999999998 56 888999999999999999976
No 462
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=81.53 E-value=1.2 Score=31.96 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=34.6
Q ss_pred HHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhc
Q 046424 39 SATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLAS 86 (266)
Q Consensus 39 ~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~ 86 (266)
.+.++||+..|..+ +.|-.|||+.+|+ +...+.|+-|+|..
T Consensus 44 l~~R~~l~~~L~~g---e~TQREIA~~lGi----S~stISRi~r~L~~ 84 (101)
T 1jhg_A 44 LGTRVRIIEELLRG---EMSQRELKNELGA----GIATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHHHC---CSCHHHHHHHHCC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CcCHHHHHHHHCC----ChhhhhHHHHHHHH
Confidence 34668999999874 7999999999999 99999998877754
No 463
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=81.48 E-value=1 Score=36.96 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=42.6
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP 117 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~ 117 (266)
+.+..+||+.+++ ++..+.++++-|...|+++..+ ...+.+|+.|..+..
T Consensus 24 ~~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r~~--------~~~v~LT~~G~~~~~ 73 (226)
T 2qq9_A 24 TPLRARIAERLEQ----SGPTVSQTVARMERDGLVVVAS--------DRSLQMTPTGRTLAT 73 (226)
T ss_dssp CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT--------TSBEEECHHHHHHHH
T ss_pred CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeC--------CCCeEECHHHHHHHH
Confidence 3456999999999 9999999999999999999862 466999998886654
No 464
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=81.47 E-value=1 Score=33.90 Aligned_cols=61 Identities=13% Similarity=0.304 Sum_probs=44.8
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQL-----PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLT 109 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~-----~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t 109 (266)
.+.-|++.|.+.+.++.|++||.+.+ ++ +..-+.|.|+.|...|++.+... .+| ..+|.++
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~--~~~--~~~Y~~~ 84 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRHNF--DGG--HAVFELA 84 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEECS--SSS--SCEEEES
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEEEe--CCC--ceEEEeC
Confidence 34558888876421289999999998 56 88889999999999999997621 112 4567653
No 465
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=81.14 E-value=1.9 Score=37.03 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=30.0
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP 234 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp 234 (266)
+....++||+||+.|.++.-++++.+-..++.+|+.
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg 114 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLG 114 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEec
Confidence 567799999999999999999988765566777774
No 466
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=80.90 E-value=0.84 Score=43.18 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=50.2
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhc-----CCccccccccCCCCccccceecchhccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLAS-----YSFLTCNLVSNKDGSVQRLYGLTPVSKY 114 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~-----~g~l~~~~~~~~~~~~~~~y~~t~~s~~ 114 (266)
-+.-|+..|...+ .+|..+|++.+++ ++..+.+.|+.|.. .|+++.. ++.|.+++....
T Consensus 431 ~~~~iL~~l~~~~--~it~~~la~~l~~----s~~~~~~~L~~L~~~~~~~~glie~~---------g~~y~L~~~~~~ 494 (583)
T 3lmm_A 431 RIAIVLYLLFQRP--FITIDVVARGLQS----GKEAARNALEAARQTTVAGAPLIIAH---------DGVWLLGNACRE 494 (583)
T ss_dssp HHHHHHHHHHHSS--SBCHHHHHHHHTS----CHHHHHHHHHHHHTCEETTEESEEEE---------TTEEEECHHHHH
T ss_pred hHHHHHHHHHHCC--CcCHHHHHHHhCc----CHHHHHHHHHHHHhhhccccceEEEe---------CCEEEECHHHHH
Confidence 3456888888876 8999999999999 99999999999998 8899976 578999985443
No 467
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=80.34 E-value=0.8 Score=37.13 Aligned_cols=48 Identities=23% Similarity=0.190 Sum_probs=41.8
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
+.+..+||+.+++ +++.++..++-|...|+++.. .+...+|+.+..++
T Consensus 30 ~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~---------~~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 30 PLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK---------QRGHFLTLKGKEIR 77 (200)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----------CEEECHHHHHHH
T ss_pred CccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---------CCCeEECHHHHHHH
Confidence 8999999999999 999999999999999999986 35688999887544
No 468
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=79.46 E-value=1.1 Score=37.42 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=49.1
Q ss_pred hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424 43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~ 116 (266)
..++..|.+.+.++.|..|||+.+++ ++..+.++++-|...|++.+.+. ..|.+ .-...+|+.|..+.
T Consensus 37 ~~vL~~L~~~~~~~~~~~el~~~l~~----~~~t~t~~l~rLe~~G~i~R~~~-~~DrR-~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 37 FILLTYLFHQQENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRS-KIDER-NTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHHHSCSCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEEC-SSSTT-SEEEECCHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecCC-CCCCC-eEEEEECHHHHHHH
Confidence 34666776532237999999999999 99999999999999999997631 12211 22366787776543
No 469
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=79.18 E-value=1.5 Score=38.03 Aligned_cols=56 Identities=14% Similarity=0.278 Sum_probs=44.6
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP 110 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~ 110 (266)
+..|++.|.+.+ .+|.++||+.+++ ++..++|-+..|...|++.+.. . +..|++.+
T Consensus 7 ~~~Il~~L~~~~--~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~~----~---g~GY~l~~ 62 (321)
T 1bia_A 7 PLKLIALLANGE--FHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTV----P---GKGYSLPE 62 (321)
T ss_dssp HHHHHHHHTTSS--CBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEE----T---TTEEECSS
T ss_pred HHHHHHHHHcCC--CcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEEe----c---CCCcEEee
Confidence 345778887654 8999999999999 9999999999999999987542 1 23577754
No 470
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=78.69 E-value=1.1 Score=32.94 Aligned_cols=52 Identities=13% Similarity=0.087 Sum_probs=40.8
Q ss_pred ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424 44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP 110 (266)
Q Consensus 44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~ 110 (266)
.|.+.+... |.++.|||+.+++ ++..+..+|+.|...|.+.... .+.|.++.
T Consensus 11 ~i~~~~~~~---p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i~--------~~~~~~~~ 62 (121)
T 2pjp_A 11 KAEPLFGDE---PWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAIV--------KDRYYRND 62 (121)
T ss_dssp HHGGGCSSS---CEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE--------TTEEEEHH
T ss_pred HHHHHHHhC---CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEec--------CCceECHH
Confidence 344555433 7799999999999 9999999999999999888762 55566553
No 471
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=78.28 E-value=2.5 Score=37.96 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=29.2
Q ss_pred CCCceEEEecCCccHHHHHHH-HHCCC-CeEEEeec
Q 046424 200 EGLNQLVDVAGGLGANLKSIV-SKYPQ-LRGINFDL 233 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~-~~~P~-l~~~v~Dl 233 (266)
+...+++|||++.|.++..++ +..|. .+++.++-
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP 260 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEP 260 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECC
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcC
Confidence 456899999999999999988 67776 78999986
No 472
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=77.69 E-value=1.1 Score=40.07 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=44.3
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLT 109 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t 109 (266)
+..|+++|... |.++++|++.+|+ +...+...|-.|.-.|++.... ++.|+++
T Consensus 330 ~~~vl~~l~~~---~~~~D~l~~~~gl----~~~~v~~~L~~LEl~G~v~~~~--------Gg~~~~~ 382 (382)
T 3maj_A 330 RTRILALLGPS---PVGIDDLIRLSGI----SPAVVRTILLELELAGRLERHG--------GSLVSLS 382 (382)
T ss_dssp HHHHHHHCCSS---CEEHHHHHHHHCC----CHHHHHHHHHHHHHTTCCEECT--------TSEEEC-
T ss_pred HHHHHHhhCCC---CCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEeCC--------CceEecC
Confidence 34588888753 8999999999999 9999999999999999999862 5777753
No 473
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=76.78 E-value=2.5 Score=31.24 Aligned_cols=76 Identities=13% Similarity=0.144 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccce
Q 046424 32 VLPMTIKSATELGLLEIMAKASPTQLSSSEIASQL-----PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLY 106 (266)
Q Consensus 32 ~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~-----~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y 106 (266)
+.++.++-..++-|+..|. . |.+--+|.+.+ ++ ++..+.++|+-|...|+|+...... ++...-.|
T Consensus 13 ~~~~l~~g~l~~~IL~lL~-~---p~~GYei~~~l~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~-~~~~rk~Y 83 (123)
T 3ri2_A 13 MVLELRRGTLVMLVLSQLR-E---PAYGYALVKSLADHGIPI----EANTLYPLMRRLESQGLLASEWDNG-GSKPRKYY 83 (123)
T ss_dssp HHHHHHHHHHHHHHHHHTT-S---CEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSEEEEEEEC-SSCEEEEE
T ss_pred HHHHHHhCcHHHHHHHHHc-C---CCCHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeccC-CCCCceEE
Confidence 4455666667777888887 4 88998888884 77 8999999999999999999652111 11123468
Q ss_pred ecchhccccc
Q 046424 107 GLTPVSKYFV 116 (266)
Q Consensus 107 ~~t~~s~~l~ 116 (266)
++|+.|+..+
T Consensus 84 ~LT~~Gr~~l 93 (123)
T 3ri2_A 84 RTTDEGLRVL 93 (123)
T ss_dssp EECHHHHHHH
T ss_pred EECHHHHHHH
Confidence 8998877544
No 474
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=75.51 E-value=2.8 Score=28.35 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=35.5
Q ss_pred hHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 46 LEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 46 fd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+.+.+++.+.+++.++|+.++++ ..+++..++.+|.+.|++++.
T Consensus 20 i~l~~~~~~~~i~l~~aa~~L~v~---~kRRiYDI~NVLe~igli~K~ 64 (76)
T 1cf7_A 20 VSLLQEAKDGVLDLKLAADTLAVR---QKRRIYDITNVLEGIGLIEKK 64 (76)
T ss_dssp HHHHHHSSTTEEEHHHHHHHTTTC---CTHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHhCCCCcCcHHHHHHHhCCc---cceehhhHHHHHhHhcceeec
Confidence 334444333479999999999982 467899999999999999986
No 475
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=75.08 E-value=2.5 Score=30.81 Aligned_cols=65 Identities=17% Similarity=0.259 Sum_probs=45.6
Q ss_pred hhHHHhhcCCCCCCHHHHHhhC-------CCCCCCCcchHHHHHHHHhcCCccccccccC-CCCccccceecchhccccc
Q 046424 45 LLEIMAKASPTQLSSSEIASQL-------PTNNKKAPIILDRMLRLLASYSFLTCNLVSN-KDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 45 lfd~L~~~g~~~~t~~elA~~~-------~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~-~~~~~~~~y~~t~~s~~l~ 116 (266)
|+..|.+. |.+--+|.+.+ ++ ++..+...|+-|...|+|+...... ..|...-.|++|+.|+..+
T Consensus 27 IL~lL~~~---~~~Gyei~~~l~~~~~~~~i----s~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l 99 (115)
T 2dql_A 27 ILYVLLQG---ESYGTELIQQLETEHPTYRL----SDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQA 99 (115)
T ss_dssp HHHHHTTS---CBCHHHHHHHHHHHCTTEEC----CHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHH
T ss_pred HHHHHHhC---CCCHHHHHHHHHHHcCCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHH
Confidence 56667653 88888877666 46 8899999999999999998652110 0122234599998887544
No 476
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=74.95 E-value=0.53 Score=36.52 Aligned_cols=45 Identities=18% Similarity=0.294 Sum_probs=37.7
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTC 92 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~ 92 (266)
+..|.+.|..++ .+|..+||+.+|+ +...+++-++.|...|+++.
T Consensus 15 ~~~Il~~l~~~~--~ls~~eLa~~lgv----Sr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 15 DRNILNELQKDG--RISNVELSKRVGL----SPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHHHHHHCS--SCCTTGGGTSSSC----CTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHHHhCC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 445667777765 8899999999999 88888889999999999983
No 477
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=74.40 E-value=1.5 Score=33.54 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=39.4
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQL-----PTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~-----~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+.-|++.|.+.+..+.|++||.+.+ ++ +..-+.|.|+.|...|++.+.
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 71 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEI----GLATVYRVLNQFDDAGIVTRH 71 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHCCcEEEE
Confidence 34457888865420289999999998 55 888899999999999999976
No 478
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=74.23 E-value=2.9 Score=32.10 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=46.0
Q ss_pred hhHHHhhcCCCCCCHHHHHhhC-------CCCCCCCcchHHHHHHHHhcCCccccccccC-CCCccccceecchhccccc
Q 046424 45 LLEIMAKASPTQLSSSEIASQL-------PTNNKKAPIILDRMLRLLASYSFLTCNLVSN-KDGSVQRLYGLTPVSKYFV 116 (266)
Q Consensus 45 lfd~L~~~g~~~~t~~elA~~~-------~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~-~~~~~~~~y~~t~~s~~l~ 116 (266)
|+.+|.+. +.+--+|.+.+ ++ ++..+...|+-|...|+|+...... ..|...-.|++|+.|+..+
T Consensus 49 IL~lL~~~---p~~GYeI~k~l~~~~~~~~i----s~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l 121 (148)
T 2zfw_A 49 VLAVLRHE---DSYGTELIQHLETHWPNYRL----SDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRS 121 (148)
T ss_dssp HHHHHTTC---CEEHHHHHHHHHHHCTTEEC----CSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTT
T ss_pred HHHHHHhC---CCcHHHHHHHHHHHcCCCCC----ChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHH
Confidence 56667653 88888887766 46 8899999999999999998652110 0122234599999887554
No 479
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=73.89 E-value=0.66 Score=43.88 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchh
Q 046424 43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPV 111 (266)
Q Consensus 43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~ 111 (266)
--|.+.|.+.| .+|..||++.||+ +...+.++|+-|+..|+++... .|+ ..+|..+++
T Consensus 519 ~~I~~~l~~~g--~it~~di~~l~~l----s~~qa~~~L~~Lv~~G~l~~~G----~gr-~t~Y~~~~~ 576 (583)
T 3lmm_A 519 NAAMLWLSEVG--DLATSDLMAMCGV----SRGTAKACVDGLVDEERVVAVG----GGR-SRRYRLVEL 576 (583)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHcC--CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEeC----CCC-ceEEEEeec
Confidence 35788888877 8999999999999 8889999999999999998762 221 455777654
No 480
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=73.88 E-value=3 Score=35.91 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=34.5
Q ss_pred HhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccc-cc
Q 046424 49 MAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLT-CN 93 (266)
Q Consensus 49 L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~-~~ 93 (266)
|...+ ++|..|||+.+|+ ++.-++|.|..|...|+|+ +.
T Consensus 16 l~~~~--~~~~~ela~~l~v----S~~tIrRdL~~l~~~G~v~iri 55 (315)
T 2w48_A 16 LYYEQ--DMTQAQIARELGI----YRTTISRLLKRGREQGIVTIAI 55 (315)
T ss_dssp HHHTS--CCCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEEe
Confidence 44444 8999999999999 9999999999999999998 54
No 481
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=73.86 E-value=2.3 Score=37.02 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=44.8
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchh
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPV 111 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~ 111 (266)
+..|++.|.++...+.|.++||+.+|+ +...+.+.++.|...|+..+.. . +..|++.+.
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~lgv----Sr~aV~k~i~~L~~~G~~i~~~--~-----~~GY~L~~~ 63 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESLNI----SRTAVKKVIDQLKLEGCKIDSV--N-----HKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEEE--T-----TTEEEEEEC
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHCC----CHHHHHHHHHHHHhcCCeEEEe--C-----CCeEEEecC
Confidence 345778885432138999999999999 9999999999999999966531 1 345888753
No 482
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=73.59 E-value=1.9 Score=32.78 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=39.9
Q ss_pred HhhChhHHHhhcCCCCCCHHHHHhhCCCCCC-CCcchHHHHHHHHhcCCccccc
Q 046424 41 TELGLLEIMAKASPTQLSSSEIASQLPTNNK-KAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~-~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+.-|++.|.+.+ +.|++||.+.+.-..| .+..-+.|.|+.|...|++.+.
T Consensus 20 qR~~Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i 71 (145)
T 3eyy_A 20 QRQLVLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHA 71 (145)
T ss_dssp HHHHHHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEE
Confidence 4455788887765 8999999998732111 2778899999999999999976
No 483
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=73.46 E-value=0.72 Score=33.07 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=31.8
Q ss_pred CC-CHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 56 QL-SSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 56 ~~-t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+ |..+||+.+|+ +...+++.|+.|...|+|+..
T Consensus 42 ~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 42 GLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp EEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 55 99999999999 999999999999999999876
No 484
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=73.42 E-value=2.5 Score=27.97 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=39.4
Q ss_pred hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcc-hHHHHHHHHhcCCccccc
Q 046424 42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPI-ILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~-~l~rlLr~L~~~g~l~~~ 93 (266)
+-.|++.|.++| |.++-.||+.+|+ ... -+.+.|-.|...|+|..+
T Consensus 12 ee~I~~fL~~~G--p~~AL~IAK~LGl----ktAK~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDNG--PQRALVIAQALGM----RTAKDVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHHC--SEEHHHHHHHTTC----CSGGGTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHcC--CchHHHHHHHhCc----chhhhcCHHHHHHHHccCcCCC
Confidence 456889999987 9999999999999 444 489999999999999765
No 485
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=73.15 E-value=2.7 Score=35.29 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=26.9
Q ss_pred CCceEEEecCCccHHHHHHHHH-------CCC-----CeEEEeec
Q 046424 201 GLNQLVDVAGGLGANLKSIVSK-------YPQ-----LRGINFDL 233 (266)
Q Consensus 201 ~~~~vvDVGGG~G~~~~~l~~~-------~P~-----l~~~v~Dl 233 (266)
+..+|++||.|+|..+..+++. +|+ ++++.+|.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~ 104 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK 104 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEEC
Confidence 4579999999999988887665 785 57888886
No 486
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=72.87 E-value=3.1 Score=33.34 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=32.5
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
++|-++||..+|+ ++..+.|+|.-|...|+++..
T Consensus 180 ~~t~~~lA~~lg~----sr~tvsR~l~~l~~~g~I~~~ 213 (232)
T 2gau_A 180 YLSREELATLSNM----TVSNAIRTLSTFVSERMLALD 213 (232)
T ss_dssp CCCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeeC
Confidence 7899999999999 999999999999999999976
No 487
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=72.59 E-value=0.92 Score=35.03 Aligned_cols=51 Identities=4% Similarity=-0.135 Sum_probs=32.6
Q ss_pred CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--CCceEEeccCCC-CC---CCC--CEEEe
Q 046424 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC--PGVEHVGGDMFV-EV---PKG--QAIFM 265 (266)
Q Consensus 199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--~ri~~~~gD~f~-~~---P~~--D~~~l 265 (266)
.+...+|+|||||. +.+|.. ..++.++.. .+++++.+|+.+ +. |.+ |+++.
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~ 69 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILS 69 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEE
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEE
Confidence 45668999999996 225653 455554432 358888888876 43 443 87764
No 488
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=72.47 E-value=2.5 Score=33.45 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=32.5
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
++|-++||..+|+ ++..+.|+|.-|...|+++..
T Consensus 169 ~~t~~~lA~~lg~----sr~tvsR~l~~L~~~g~I~~~ 202 (220)
T 3dv8_A 169 KITHETIANHLGS----HREVITRMLRYFQVEGLVKLS 202 (220)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeC
Confidence 7899999999999 999999999999999999875
No 489
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=72.35 E-value=2.5 Score=33.67 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=32.3
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
++|-++||..+|+ ++..+.|+|.-|...|+++..
T Consensus 178 ~~t~~~lA~~lg~----sr~tvsR~l~~l~~~g~I~~~ 211 (227)
T 3dkw_A 178 PVAKQLVAGHLSI----QPETFSRIMHRLGDEGIIHLD 211 (227)
T ss_dssp CSCTHHHHHHTTS----CHHHHHHHHHHHHHHTSEEES
T ss_pred cCCHHHHHHHhCC----CHHHHHHHHHHHHHCCcEEec
Confidence 6889999999999 999999999999999999976
No 490
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=72.22 E-value=2 Score=33.72 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=32.2
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
++|-++||..+|+ ++..+.|+|.-|...|+++..
T Consensus 164 ~~t~~~lA~~lg~----sr~tvsR~l~~l~~~g~I~~~ 197 (207)
T 2oz6_A 164 KITRQEIGRIVGC----SREMVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEec
Confidence 5899999999999 999999999999999999875
No 491
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=72.02 E-value=2.6 Score=33.71 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=32.5
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
++|-++||..+|+ ++..+.|+|.-|...|+++..
T Consensus 175 ~~t~~~iA~~lg~----sr~tvsR~l~~L~~~g~I~~~ 208 (231)
T 3e97_A 175 PLGTQDIMARTSS----SRETVSRVLKRLEAHNILEVS 208 (231)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCcEEec
Confidence 7899999999999 999999999999999999976
No 492
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=71.65 E-value=3.3 Score=33.93 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=32.8
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+|+.+||+.+|+ +.......|..+...|++..+
T Consensus 168 ~vt~~~la~~l~w----s~~~a~e~L~~~e~~G~l~~D 201 (218)
T 3cuq_B 168 SLTSEEFAKLVGM----SVLLAKERLLLAEKMGHLCRD 201 (218)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCEEEE
Confidence 8999999999999 999999999999999999987
No 493
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=71.30 E-value=2.4 Score=33.08 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=32.3
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
++|-++||..+|+ ++..+.|+|.-|...|+++..
T Consensus 139 ~~t~~~lA~~lg~----sr~tvsR~l~~L~~~g~I~~~ 172 (195)
T 3b02_A 139 TVSHEEIADATAS----IRESVSKVLADLRREGLIATA 172 (195)
T ss_dssp ECCHHHHHHTTTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEec
Confidence 5899999999999 999999999999999999976
No 494
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=70.99 E-value=2.4 Score=33.31 Aligned_cols=34 Identities=12% Similarity=0.262 Sum_probs=32.2
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
++|-++||..+|+ ++..+.|+|.-|...|+++..
T Consensus 146 ~~t~~~lA~~lg~----sr~tvsR~l~~L~~~g~I~~~ 179 (202)
T 2zcw_A 146 KATHDELAAAVGS----VRETVTKVIGELAREGYIRSG 179 (202)
T ss_dssp ECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeC
Confidence 5899999999999 999999999999999999975
No 495
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=70.89 E-value=2.8 Score=34.13 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=32.5
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
++|-++||..+|+ ++..+.|+|.-|...|+++..
T Consensus 193 ~lt~~~lA~~lG~----sr~tvsR~l~~L~~~GlI~~~ 226 (243)
T 3la7_A 193 KLSHQAIAEAIGS----TRVTVTRLLGDLREKKMISIH 226 (243)
T ss_dssp CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHCC----cHHHHHHHHHHHHHCCCEEEc
Confidence 6899999999999 999999999999999999976
No 496
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=70.83 E-value=3.2 Score=26.20 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=29.2
Q ss_pred hhHHHhhcCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCcc
Q 046424 45 LLEIMAKASPTQLSSSEIASQL-----PTNNKKAPIILDRMLRLLASYSFL 90 (266)
Q Consensus 45 lfd~L~~~g~~~~t~~elA~~~-----~~~~~~~~~~l~rlLr~L~~~g~l 90 (266)
|...|...+ +.|++||++.+ ++ +..-+.|-|. ..|++
T Consensus 10 i~~ll~~~~--~~t~~el~~~l~~~~~~v----s~~Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 10 IREIITSNE--IETQDELVDMLKQDGYKV----TQATVSRDIK---ELHLV 51 (64)
T ss_dssp HHHHHHHSC--CCSHHHHHHHHHHTTCCC----CHHHHHHHHH---HHTCE
T ss_pred HHHHHHcCC--CCCHHHHHHHHHHhCCCc----CHHHHHHHHH---HcCCE
Confidence 345565554 89999999999 89 8888888888 55777
No 497
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=70.42 E-value=16 Score=29.27 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=34.2
Q ss_pred CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC---------CCCceEEeccCC
Q 046424 200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS---------CPGVEHVGGDMF 254 (266)
Q Consensus 200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~---------~~ri~~~~gD~f 254 (266)
.+.++|++||+| ++..++.+.|+-+.+-+|.. +-.+.+++ .++|+++.||..
T Consensus 29 ~~a~~VLEiGtG---ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~ 90 (202)
T 3cvo_A 29 EEAEVILEYGSG---GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIG 90 (202)
T ss_dssp HHCSEEEEESCS---HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCS
T ss_pred hCCCEEEEECch---HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCch
Confidence 356899999985 34444444567888888863 33333321 357999999954
No 498
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=70.17 E-value=3.1 Score=30.03 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=31.6
Q ss_pred CC-CHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 56 QL-SSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 56 ~~-t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+ |..+||+.+|+ +..-+++.|..|...|+++..
T Consensus 32 ~lPs~~~La~~~~v----Sr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 32 MIPSIRKISTEYQI----NPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp EECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 45 89999999999 999999999999999999876
No 499
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=69.93 E-value=4.3 Score=30.14 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=31.8
Q ss_pred CC-CHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 56 QL-SSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 56 ~~-t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
.+ |..+||+.+|+ +...+++.|+.|...|+++..
T Consensus 27 ~LPse~~La~~~gv----Sr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 27 RVPSTNELAAFHRI----NPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp CBCCHHHHHHHTTC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred cCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 56 89999999999 999999999999999999976
No 500
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=69.93 E-value=2.5 Score=33.35 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=32.4
Q ss_pred CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424 56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93 (266)
Q Consensus 56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~ 93 (266)
++|-++||..+|+ ++..+.|+|.-|...|+++..
T Consensus 163 ~~t~~~lA~~lg~----sr~tvsR~l~~l~~~g~I~~~ 196 (216)
T 4ev0_A 163 QIRHHELAALAGT----SRETVSRVLHALAEEGVVRLG 196 (216)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEec
Confidence 6899999999999 999999999999999999976
Done!