BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046427
(595 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 269 bits (688), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 139/275 (50%), Positives = 183/275 (66%), Gaps = 9/275 (3%)
Query: 62 LGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVG 121
L + GL V++ NLS EEL ++ C+ LIVRS TKVT +V ++A +L+VVG
Sbjct: 43 LQDGGLQVVEK-------QNLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVG 94
Query: 122 RAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQ 181
RAG G+DNVDL AAT G LV+N P N+++AAE ++ +AR I QA AS+K GKW+
Sbjct: 95 RAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWE 154
Query: 182 RNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFE 241
R K++G L GKTL ++G G++G EVA R + GM I +DP + + + GV + E
Sbjct: 155 RKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLE 214
Query: 242 EAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301
E DFI++H PL P+T+ + ND F + KKGVR+VN ARGG+VDE AL+RAL SG
Sbjct: 215 EIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQC 274
Query: 302 SQAALDVFTEEPPAKDSKLVLHENVTVTPHLGAST 336
+ AALDVFTEEPP +D LV HENV PHLGAST
Sbjct: 275 AGAALDVFTEEPP-RDRALVDHENVISCPHLGAST 308
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 245 bits (625), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 187/537 (34%), Positives = 271/537 (50%), Gaps = 28/537 (5%)
Query: 50 ITSKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREV 109
+ S P VL+A+KL + + L + V ++L + DAL+VRS T V EV
Sbjct: 1 MVSLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEV 60
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
++A +LK+V RAGVG+DNVD+ AAT G LVVNAPT+N +AAEH +ALL A +R I
Sbjct: 61 L-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIP 119
Query: 170 QADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR 229
ADAS++ W+R+ + G + GKT+ V+G G++G VA+R G V+A+DPY R
Sbjct: 120 AADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPAR 179
Query: 230 ARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289
A G+ L+S ++ ++ ADFIS+H+P TP T+ + + EA K K GV IVN ARGG+VDE
Sbjct: 180 AAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDE 239
Query: 290 EALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTXXXXXXXXXXXX 349
AL A+ G + A LDVF E P DS L V VTPHLGAST
Sbjct: 240 AALADAITGGHVRAAGLDVFATE-PCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAE 298
Query: 350 XXXXXLKGELAATAVNAPMVPAEVIS-ELAPFVTLAEKXXXXXXXXXXXXXXXXXXXXXX 408
L GE AVN V V++ E+AP++ L K
Sbjct: 299 SVRLALAGEFVPDAVN---VGGGVVNEEVAPWLDLVRKLGVLAGVLSDELPVSLSVQVRG 355
Query: 409 XXXRGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPEN 468
+ +LR +G+ + V VNA +A +RG VT E SP N
Sbjct: 356 ELAAE----EVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERG--VTAEICKASESP-N 408
Query: 469 PLEFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLT----KVGSFGVDVSLEGSII 524
+ V+ + GS ++ G + P L+ ++ D+ +G +
Sbjct: 409 HRSVVDVRAVGAD---GSVVTVSGTLY--------GPQLSQKIVQINGRHFDLRAQGINL 457
Query: 525 LCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKI 581
+ VD+PG +GK+G+LLG VN+ + A A + + +D++ +V I
Sbjct: 458 IIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAI 514
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 244 bits (624), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 187/535 (34%), Positives = 270/535 (50%), Gaps = 28/535 (5%)
Query: 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFE 111
S P VL+A+KL + + L + V ++L + DAL+VRS T V EV
Sbjct: 2 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL- 60
Query: 112 SSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
++A +LK+V RAGVG+DNVD+ AAT G LVVNAPT+N +AAEH +ALL A +R I A
Sbjct: 61 AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAA 120
Query: 172 DASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRAR 231
DAS++ W+R+ + G + GKT+ V+G G++G VA+R G V+A+DPY RA
Sbjct: 121 DASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA 180
Query: 232 ATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEA 291
G+ L+S ++ ++ ADFIS+H+P TP T+ + + EA K K GV IVN ARGG+VDE A
Sbjct: 181 QLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAA 240
Query: 292 LVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTXXXXXXXXXXXXXX 351
L A+ G + A LDVF E P DS L V VTPHLGAST
Sbjct: 241 LADAITGGHVRAAGLDVFATE-PCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESV 299
Query: 352 XXXLKGELAATAVNAPMVPAEVIS-ELAPFVTLAEKXXXXXXXXXXXXXXXXXXXXXXXX 410
L GE AVN V V++ E+AP++ L K
Sbjct: 300 RLALAGEFVPDAVN---VGGGVVNEEVAPWLDLVRKLGVLAGVLSDELPVSLSVQVRGEL 356
Query: 411 XRGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPL 470
+ +LR +G+ + V VNA +A +RG VT E SP N
Sbjct: 357 AAE----EVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERG--VTAEICKASESP-NHR 409
Query: 471 EFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLT----KVGSFGVDVSLEGSIILC 526
+ V+ + GS ++ G + P L+ ++ D+ +G ++
Sbjct: 410 SVVDVRAVGAD---GSVVTVSGTLY--------GPQLSQKIVQINGRHFDLRAQGINLII 458
Query: 527 RQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKI 581
VD+PG +GK+G+LLG VN+ + A A + + +D++ +V I
Sbjct: 459 HYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAI 513
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 125/283 (44%), Positives = 180/283 (63%), Gaps = 4/283 (1%)
Query: 56 VLVAEKLGEAGLDVLKNFANVDCSYNLSPEE--LCTKISLCDALIVRSGTKVTREVFESS 113
VLVA L E + VLK+ A ++ Y P+E L + +A+IVRS KVTR V ES
Sbjct: 6 VLVAAPLHEKAIQVLKD-AGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIES- 63
Query: 114 AGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADA 173
A +LKV+ RAGVG+DN+D+ AA E G VVNAP A++ + AE + L+ ++AR IA AD
Sbjct: 64 APKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADR 123
Query: 174 SVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARAT 233
++ G W + + +G+ L GKT+ ++GFG++G +VA+ A LGMN++ +DPY +RA+
Sbjct: 124 KMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEV 183
Query: 234 GVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALV 293
V E + +D +++H+PL +T + N+E MKK ++N +RG VVD ALV
Sbjct: 184 NGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALV 243
Query: 294 RALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGAST 336
+AL G I+ A LDVF EEP KD L +NV +TPH+GAST
Sbjct: 244 KALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGAST 286
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/264 (38%), Positives = 150/264 (56%), Gaps = 5/264 (1%)
Query: 75 NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSA 134
VD +S EEL I D ++VRS TKVT++V E +LK++ RAG+G+DN+D
Sbjct: 28 QVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKGK-KLKIIARAGIGLDNIDTEE 86
Query: 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKT 194
A + VV AP A+T +A E I L+ A AR + + A K+G ++ K G+ L GKT
Sbjct: 87 AEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFK--KIEGLELAGKT 144
Query: 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHM 254
+ ++GFG++GT+V A +GM V+A+D ++A VS EE + +D ISLH+
Sbjct: 145 IGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHV 204
Query: 255 PLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPP 314
++ + + F MK V IVN +R V+ +AL+ + G + A DVF EPP
Sbjct: 205 TVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPP 264
Query: 315 AKDSKLVL--HENVTVTPHLGAST 336
++ +L L HE V VT H+GA T
Sbjct: 265 KEEWELELLKHERVIVTTHIGAQT 288
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 174/327 (53%), Gaps = 12/327 (3%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDC---SYNLSPEELCTKISLCDALIVRSGTKVTREV 109
KP V + ++ E G+ +L++ V+ + E L K+ DAL+ ++ +EV
Sbjct: 2 KPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEV 61
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
FE+ A +L++V VG DN+D+ AT+ G V N P T A A+ ALL A AR++
Sbjct: 62 FEN-APKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVV 120
Query: 170 QADASVKAGKWQR-------NKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHD 222
+ D V++G+W++ ++G + GKT+ ++G G++G +A+RAKG M ++ +
Sbjct: 121 KGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYS 180
Query: 223 PYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282
+ + R E+ + +DF+ L +PLT T + N+E MKK ++N+A
Sbjct: 181 RTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA 240
Query: 283 RGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTXXXXX 342
RG VVD ALV+AL G I+ A LDVF EE P + +L +NV +TPH+G+++
Sbjct: 241 RGKVVDTNALVKALKEGWIAGAGLDVFEEE-PYYNEELFKLDNVVLTPHIGSASFGAREG 299
Query: 343 XXXXXXXXXXXXLKGELAATAVNAPMV 369
+GE+ T VN ++
Sbjct: 300 MAELVAKNLIAFKRGEIPPTLVNREVI 326
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 158/289 (54%), Gaps = 12/289 (4%)
Query: 56 VLVAEKLGEAGLDVLKNFANVDCSY---NLSPEELCTKISLCDALIVRSGTKVTREVFES 112
VL+ E + + ++ K+ + ++ L +L IS + +RS T++T E+F +
Sbjct: 18 VLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTEEIF-A 76
Query: 113 SAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQAD 172
+A RL VG VG + V+L AA + G V NAP +NT + AE I + + R I
Sbjct: 77 AANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRS 136
Query: 173 ASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARA 232
S AG W++ + GKTL ++G+G +G++V A+ LGM V +D +D+ +
Sbjct: 137 VSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYD---TSDKLQY 193
Query: 233 TGVG-LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEA 291
V S +E + T+D +SLH+P + +TSK+ + KMKKG ++N ARG VD EA
Sbjct: 194 GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEA 253
Query: 292 LVRALDSGIISQAALDVFTEEPPAKDSK----LVLHENVTVTPHLGAST 336
L + L G ++ AA+DVF EP + + L ENV +TPH+G ST
Sbjct: 254 LAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGST 302
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 172/327 (52%), Gaps = 12/327 (3%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDC---SYNLSPEELCTKISLCDALIVRSGTKVTREV 109
KP V + ++ E G+ L++ V+ + E L K+ DAL+ ++ +EV
Sbjct: 2 KPKVFITREIPEVGIKXLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTXLSERIDKEV 61
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
FE+ A +L++V VG DN+D+ AT+ G V N P T A A+ ALL A AR++
Sbjct: 62 FEN-APKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVV 120
Query: 170 QADASVKAGKWQR-------NKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHD 222
+ D V++G+W++ ++G + GKT+ ++G G++G +A+RAKG ++ +
Sbjct: 121 KGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRILYYS 180
Query: 223 PYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282
+ + R E+ + +DF+ L +PLT T + N+E KK ++N+A
Sbjct: 181 RTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILINIA 240
Query: 283 RGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTXXXXX 342
RG VVD ALV+AL G I+ A LDVF EE P + +L +NV +TPH+G+++
Sbjct: 241 RGKVVDTNALVKALKEGWIAGAGLDVFEEE-PYYNEELFKLDNVVLTPHIGSASFGAREG 299
Query: 343 XXXXXXXXXXXXLKGELAATAVNAPMV 369
+GE+ T VN ++
Sbjct: 300 XAELVAKNLIAFKRGEIPPTLVNREVI 326
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 157/324 (48%), Gaps = 10/324 (3%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFES 112
+P V V K+ L+ LK +A+V+ S EEL I D +IV TK+TREV E+
Sbjct: 2 RPKVGVLLKMKREALEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLEN 61
Query: 113 SAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQAD 172
A RLKV+ G DN+DL AT+ G V + A AE + L+ + R I AD
Sbjct: 62 -AERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYAD 120
Query: 173 ASVKAGKWQRNKYVGV------SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ 226
++ G+W+ + + SL GK + ++G G +G +ARR G+ + + +
Sbjct: 121 KFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRK 180
Query: 227 ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286
+ + + +E + +D + L +PLT T + N+E K+ +G +VN+ RG +
Sbjct: 181 VNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKL-EGKYLVNIGRGAL 239
Query: 287 VDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTV-TPHLGASTTXXXXXXXX 345
VDE+A+ A+ G + A DVF E+ P ++ +L +E TV TPH
Sbjct: 240 VDEKAVTEAIKQGKLKGYATDVF-EKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGF 298
Query: 346 XXXXXXXXXLKGELAATAVNAPMV 369
L+GE+ VN ++
Sbjct: 299 RAVENLLKVLRGEVPEDLVNKEVL 322
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 128/258 (49%), Gaps = 6/258 (2%)
Query: 85 EELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVN 144
+E+ DAL++ K +EV + +K + +G D++DL A G V N
Sbjct: 36 DEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGN 95
Query: 145 APTANTIAAAEHGIALLTAMARNIAQADASVKAGKW---QRNKYVGVSLVGKTLAVMGFG 201
AP T+A AE + LL AR + + ++ W + + VG L KTL + GFG
Sbjct: 96 APHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFG 155
Query: 202 KVGTEVARRAKGLGMNVIAHDPY--AQADRARATGVGLVSFEEAISTADFISLHMPLTPA 259
+G +A+RA+G M++ D + + +D A S + +S + F SL+ P TP
Sbjct: 156 SIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPE 215
Query: 260 TSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSK 319
T FN + +G +VN ARG +VD E +V AL++G ++ A DVF EP +
Sbjct: 216 TRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGY 275
Query: 320 LVLHENVTVTPHLGASTT 337
L N + PH+G++ T
Sbjct: 276 YDL-PNTFLFPHIGSAAT 292
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 149/291 (51%), Gaps = 10/291 (3%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYN---LSPEELCTKISLCDALIVRSGTKVTREV 109
K L+ E + + L+ L+ + ++ L E+L I + +RS T +T +V
Sbjct: 10 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 69
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
++A +L +G +G + VDL AA + G V NAP +NT + AE I L + R +
Sbjct: 70 I-NAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 128
Query: 170 QADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR 229
+A+A G W + GK L ++G+G +GT++ A+ LGM V +D +
Sbjct: 129 EANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL 188
Query: 230 ARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289
AT V +S + ++ +D +SLH+P P+T M + MK G ++N +RG VVD
Sbjct: 189 GNATQVQHLS--DLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 246
Query: 290 EALVRALDSGIISQAALDVFTEEPPAKD----SKLVLHENVTVTPHLGAST 336
AL AL S ++ AA+DVF EP S L +NV +TPH+G ST
Sbjct: 247 PALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGST 297
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 149/291 (51%), Gaps = 10/291 (3%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYN---LSPEELCTKISLCDALIVRSGTKVTREV 109
K L+ E + + L+ L+ + ++ L E+L I + +RS T +T +V
Sbjct: 10 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 69
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
++A +L +G +G + VDL AA + G V NAP +NT + AE I L + R +
Sbjct: 70 I-NAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 128
Query: 170 QADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR 229
+A+A G W + GK L ++G+G +GT++ A+ LGM V +D +
Sbjct: 129 EANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL 188
Query: 230 ARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289
AT V +S + ++ +D +SLH+P P+T M + MK G ++N +RG VVD
Sbjct: 189 GNATQVQHLS--DLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 246
Query: 290 EALVRALDSGIISQAALDVFTEEPPAKD----SKLVLHENVTVTPHLGAST 336
AL AL S ++ AA+DVF EP S L +NV +TPH+G ST
Sbjct: 247 PALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGST 297
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 131 bits (330), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 149/291 (51%), Gaps = 10/291 (3%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYN---LSPEELCTKISLCDALIVRSGTKVTREV 109
K L+ E + + L+ L+ + ++ L E+L I + +RS T +T +V
Sbjct: 9 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 68
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
++A +L +G +G + VDL AA + G V NAP +NT + AE I L + R +
Sbjct: 69 I-NAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 127
Query: 170 QADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR 229
+A+A G W + GK L ++G+G +GT++ A+ LGM V +D +
Sbjct: 128 EANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL 187
Query: 230 ARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289
AT V +S + ++ +D +SLH+P P+T M + MK G ++N +RG VVD
Sbjct: 188 GNATQVQHLS--DLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 245
Query: 290 EALVRALDSGIISQAALDVFTEEPPAKD----SKLVLHENVTVTPHLGAST 336
AL AL S ++ AA+DVF EP S L +NV +TPH+G ST
Sbjct: 246 PALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGST 296
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 142/279 (50%), Gaps = 23/279 (8%)
Query: 69 VLKNFANVDCSYNLSPEELCTKISLCDAL--IVRSGTKVTREVFESSAGRLKVVGRAGVG 126
+LK+ A V S +E+ K+ L +A+ ++ +TRE E L+V+ R G G
Sbjct: 22 ILKDLATVAFCDAQSTQEIHEKV-LNEAVGAMMYHTITLTREDLEKFKA-LRVIVRIGSG 79
Query: 127 IDNVDLSAATEHGCLVVNAPTANTIAAAEHGIA-LLTAMARNIAQADASVKAGKWQRNKY 185
DNVD+ AA E G V N P+A A+ I +L RN A + + Q +
Sbjct: 80 YDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVEQ 139
Query: 186 V------GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV- 238
+ + G+TL ++GFG+ G VA RAK G +VI +DPY Q R+ GV V
Sbjct: 140 IREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVY 199
Query: 239 SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298
+ ++ + +D +SLH L + ND +M++G +VN ARGG+VDE+AL +AL
Sbjct: 200 TLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKE 259
Query: 299 GIISQAALDVFTEEP------PAKDSKLVLHENVTVTPH 331
G I AALDV EP P KD+ N+ TPH
Sbjct: 260 GRIRGAALDVHESEPFSFAQGPLKDAP-----NLICTPH 293
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 141/279 (50%), Gaps = 23/279 (8%)
Query: 69 VLKNFANVDCSYNLSPEELCTKI--SLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVG 126
+LK+ A V S +E+ K+ AL+ + T +TRE E L+++ R G G
Sbjct: 41 ILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTIT-LTREDLEKFKA-LRIIVRIGSG 98
Query: 127 IDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAG------KW 180
DN+D+ +A + G V N P A+ A+ + + + R +++ G +
Sbjct: 99 FDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQ 158
Query: 181 QRNKYVGVSLV-GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVS 239
R G + + G+TL ++G G+VG VA RAK G NV+ +DPY RA G+ VS
Sbjct: 159 IREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVS 218
Query: 240 -FEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298
++ + +D ++LH L + ND +M++G +VN ARGG+VDE+AL +AL
Sbjct: 219 TLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKE 278
Query: 299 GIISQAALDVFTEEP------PAKDSKLVLHENVTVTPH 331
G I AALDV EP P KD+ N+ TPH
Sbjct: 279 GRIRGAALDVHESEPFSFSQGPLKDAP-----NLICTPH 312
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 141/279 (50%), Gaps = 23/279 (8%)
Query: 69 VLKNFANVDCSYNLSPEELCTKI--SLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVG 126
+LK+ A V S +E+ K+ AL+ + T +TRE E L+++ R G G
Sbjct: 41 ILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTIT-LTREDLEKFKA-LRIIVRIGSG 98
Query: 127 IDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAG------KW 180
DN+D+ +A + G V N P A+ A+ + + + R +++ G +
Sbjct: 99 FDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQ 158
Query: 181 QRNKYVGVSLV-GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVS 239
R G + + G+TL ++G G+VG VA RAK G NV+ +DPY RA G+ VS
Sbjct: 159 IREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVS 218
Query: 240 -FEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298
++ + +D ++LH L + ND +M++G +VN ARGG+VDE+AL +AL
Sbjct: 219 TLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKE 278
Query: 299 GIISQAALDVFTEEP------PAKDSKLVLHENVTVTPH 331
G I AALDV EP P KD+ N+ TPH
Sbjct: 279 GRIRGAALDVHESEPFSFSQGPLKDAP-----NLICTPH 312
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 141/279 (50%), Gaps = 23/279 (8%)
Query: 69 VLKNFANVDCSYNLSPEELCTKI--SLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVG 126
+LK+ A V S +E+ K+ AL+ + T +TRE E L+++ R G G
Sbjct: 38 ILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTIT-LTREDLEKFKA-LRIIVRIGSG 95
Query: 127 IDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAG------KW 180
DN+D+ +A + G V N P A+ A+ + + + R +++ G +
Sbjct: 96 FDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQ 155
Query: 181 QRNKYVGVSLV-GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVS 239
R G + + G+TL ++G G+VG VA RAK G NV+ +DPY RA G+ VS
Sbjct: 156 IREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVS 215
Query: 240 -FEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298
++ + +D ++LH L + ND +M++G +VN ARGG+VDE+AL +AL
Sbjct: 216 TLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKE 275
Query: 299 GIISQAALDVFTEEP------PAKDSKLVLHENVTVTPH 331
G I AALDV EP P KD+ N+ TPH
Sbjct: 276 GRIRGAALDVHESEPFSFSQGPLKDAP-----NLICTPH 309
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 138/264 (52%), Gaps = 18/264 (6%)
Query: 86 ELCTKISLCDALI-VRSGTKVTREVFESSAGRLKVVGRAG-VGID---NVDLSAATEHGC 140
+L +++ +AL+ +R T+VTR++ + +LK++ + G V D ++DL A T+ G
Sbjct: 41 QLAARVADVEALVLIRERTRVTRQLLDRLP-KLKIISQTGRVSRDAGGHIDLEACTDKGV 99
Query: 141 LVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQR----------NKYVGVSL 190
+V+ + +A AE AL+ A R I Q AS+K G WQ+ N +G L
Sbjct: 100 VVLEGK-GSPVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVL 158
Query: 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAI-STADF 249
G+TL + G+GK+G VA + GMNV+ +RARA G + ++A+ +D
Sbjct: 159 KGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDV 218
Query: 250 ISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVF 309
+S+H+ L T + +MK VN +R +V+E +V AL+ G AA+DVF
Sbjct: 219 LSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVF 278
Query: 310 TEEPPAKDSKLVLHENVTVTPHLG 333
EP + L+ EN TPH+G
Sbjct: 279 ETEPILQGHTLLRMENCICTPHIG 302
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 144/279 (51%), Gaps = 15/279 (5%)
Query: 60 EKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKV 119
++L E GL+V V L EL ++ LI ++ EV + + G LKV
Sbjct: 15 DRLRERGLEV-----EVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRAKG-LKV 68
Query: 120 VGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAG- 178
+ VG+D+VDL AA E G V + P T A A+ +ALL A+AR + + A + G
Sbjct: 69 IACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGL 128
Query: 179 --KWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG 236
W +G+ L G TL ++G G++G VA+RA GM V+ H A +
Sbjct: 129 WKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYH-----ARTPKPLPYP 183
Query: 237 LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRAL 296
+S EE + AD +SLH PLTP T ++ N E F MK+G ++N ARG +VD EALV AL
Sbjct: 184 FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL 243
Query: 297 DSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGAS 335
G + A LDV EP L N +TPH+G++
Sbjct: 244 -RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSA 281
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 140/279 (50%), Gaps = 23/279 (8%)
Query: 69 VLKNFANVDCSYNLSPEELCTKI--SLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVG 126
+LK+ A V S +E+ K+ AL+ + T +TRE E L+++ R G G
Sbjct: 41 ILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTIT-LTREDLEKFKA-LRIIVRIGSG 98
Query: 127 IDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAG------KW 180
DN+D+ +A + G V N P A+ A+ + + + R +++ G +
Sbjct: 99 FDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQ 158
Query: 181 QRNKYVGVSLV-GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVS 239
R G + + G+TL ++G +VG VA RAK G NV+ +DPY RA G+ VS
Sbjct: 159 IREVASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVS 218
Query: 240 -FEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298
++ + +D ++LH L + ND +M++G +VN ARGG+VDE+AL +AL
Sbjct: 219 TLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKE 278
Query: 299 GIISQAALDVFTEEP------PAKDSKLVLHENVTVTPH 331
G I AALDV EP P KD+ N+ TPH
Sbjct: 279 GRIRGAALDVHESEPFSFSQGPLKDAP-----NLICTPH 312
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 147/326 (45%), Gaps = 16/326 (4%)
Query: 54 PTVLVAEKLGEAGLDVLKNFANV---DCSYNLSPEELCTKISLCDALIVRSGTKVTREVF 110
P +++ ++ E L +L + L+ EE+ + A++ +V + F
Sbjct: 3 PKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDAD-F 61
Query: 111 ESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQ 170
+ L+V+G A G DN D+ A T G + P T+ AE I L + R++
Sbjct: 62 LQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRA 121
Query: 171 ADASVKAGK---WQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-Q 226
ADA V++GK WQ ++ G L T+ +G G +G +A R +G G + H+ A
Sbjct: 122 ADAFVRSGKFRGWQ-PRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALD 180
Query: 227 ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286
+ G+ V+ E +++DFI L +PL T + N E ++ G +VN RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 287 VDEEALVRALDSGIISQAALDVFTEEPPAK-------DSKLVLHENVTVTPHLGASTTXX 339
VDE A++ AL+ G + A DVF E A+ D L+ H N TPH+G++
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 340 XXXXXXXXXXXXXXXLKGELAATAVN 365
L GE AVN
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVN 326
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 147/326 (45%), Gaps = 16/326 (4%)
Query: 54 PTVLVAEKLGEAGLDVLKNFANV---DCSYNLSPEELCTKISLCDALIVRSGTKVTREVF 110
P +++ ++ E L +L + L+ EE+ + A++ +V + F
Sbjct: 3 PKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDAD-F 61
Query: 111 ESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQ 170
+ L+V+G A G DN D+ A T G + P T+ AE I L + R++
Sbjct: 62 LQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRA 121
Query: 171 ADASVKAGK---WQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-Q 226
ADA V++GK WQ ++ G L T+ +G G +G +A R +G G + H+ A
Sbjct: 122 ADAFVRSGKFRGWQ-PRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALD 180
Query: 227 ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286
+ G+ V+ E +++DFI L +PL T + N E ++ G +VN RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 287 VDEEALVRALDSGIISQAALDVFTEEPPAK-------DSKLVLHENVTVTPHLGASTTXX 339
VDE A++ AL+ G + A DVF E A+ D L+ H N TPH+G++
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 340 XXXXXXXXXXXXXXXLKGELAATAVN 365
L GE AVN
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVN 326
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 146/291 (50%), Gaps = 10/291 (3%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYN---LSPEELCTKISLCDALIVRSGTKVTREV 109
K L+ E + + L+ L+ + ++ L E+L I + +RS T +T +V
Sbjct: 10 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 69
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
++A +L +G +G + VDL AA + G V NAP +NT + AE I L + R +
Sbjct: 70 I-NAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 128
Query: 170 QADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR 229
+A+A G W + GK L ++G+G +GT++ A+ LG V +D +
Sbjct: 129 EANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPL 188
Query: 230 ARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289
AT V +S + ++ +D +SLH+P P+T + K G ++N +RG VVD
Sbjct: 189 GNATQVQHLS--DLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDI 246
Query: 290 EALVRALDSGIISQAALDVFTEEPPAKD----SKLVLHENVTVTPHLGAST 336
AL AL S ++ AA+DVF EP S L +NV +TPH+G ST
Sbjct: 247 PALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGST 297
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 129/284 (45%), Gaps = 18/284 (6%)
Query: 104 KVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTA 163
K+T E+ S RLK++ VG D++DL + G LV + P + + AEH A +
Sbjct: 53 KLTEELL-SKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILT 111
Query: 164 MARNIAQADASVKAGKW-QRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHD 222
+ + + + + VK + Q ++ + L TL V+G G++G+ VA G V+ +D
Sbjct: 112 LVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYD 171
Query: 223 PYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282
+ D + G S +E + +D ISLH+P T T N+E K GV ++N A
Sbjct: 172 VVKRED-LKEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVYLINTA 230
Query: 283 RGGVVDEEALVRALDSGIISQAALDVFTEEP----------PAKDSKLVLHE-----NVT 327
RG VVD +AL RA G S LDVF +E A D L + E NV
Sbjct: 231 RGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVI 290
Query: 328 VTPHLGASTTXXXXXXXXXXXXXXXXXLKGELAATAVNAPMVPA 371
+TPH+ T +KG+L N + P+
Sbjct: 291 ITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGNFVVGPS 334
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 120/236 (50%), Gaps = 4/236 (1%)
Query: 105 VTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAM 164
V + + +++ LKV+ VGID++ L + G V P T AE ++LL
Sbjct: 65 VDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTT 124
Query: 165 ARNIAQADASVKAGKWQRNK---YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH 221
R + +A VK G W K G L T+ ++G G++G +ARR K G+ +
Sbjct: 125 CRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLY 184
Query: 222 D-PYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280
+ + A VS E + +DFI + LTPAT + N + F KMK+ +N
Sbjct: 185 TGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFIN 244
Query: 281 VARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGAST 336
++RG VV+++ L +AL SG I+ A LDV + EP + L+ +N + PH+G++T
Sbjct: 245 ISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSAT 300
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 146/326 (44%), Gaps = 16/326 (4%)
Query: 54 PTVLVAEKLGEAGLDVLKNFANV---DCSYNLSPEELCTKISLCDALIVRSGTKVTREVF 110
P +++ ++ E L +L + L+ EE+ + A++ +V + F
Sbjct: 3 PKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDAD-F 61
Query: 111 ESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQ 170
+ L+V+G A G DN D+ A T G + P T+ AE I L + R++
Sbjct: 62 LQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRA 121
Query: 171 ADASVKAGK---WQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-Q 226
ADA V++G+ WQ ++ G L T+ +G G +G +A R +G G + H A
Sbjct: 122 ADAFVRSGQFRGWQ-PRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALD 180
Query: 227 ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286
+ G+ V+ E +++DFI L +PL T + N E ++ G +VN RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 287 VDEEALVRALDSGIISQAALDVFTEEPPAK-------DSKLVLHENVTVTPHLGASTTXX 339
VDE A++ AL+ G + A DVF E A+ D L+ H N TPH+G++
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 340 XXXXXXXXXXXXXXXLKGELAATAVN 365
L GE AVN
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVN 326
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 111/218 (50%), Gaps = 4/218 (1%)
Query: 123 AGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQR 182
AG+G D++DL AA G V +N ++ AE + + + RN V G+W
Sbjct: 93 AGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNV 152
Query: 183 N--KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGLV- 238
Y L GKT+ +G G++G + +R K G N++ HD A + + TG V
Sbjct: 153 AGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVE 212
Query: 239 SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298
E + D I ++MPLT T MFN E K+KKGV IVN ARG +++ +A+V A++S
Sbjct: 213 DLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVES 272
Query: 299 GIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGAST 336
G I + DV+ +P KD N +TPH +T
Sbjct: 273 GHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 310
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 146/326 (44%), Gaps = 16/326 (4%)
Query: 54 PTVLVAEKLGEAGLDVLKNFANV---DCSYNLSPEELCTKISLCDALIVRSGTKVTREVF 110
P +++ ++ E L +L + L+ EE+ + A++ +V + F
Sbjct: 3 PKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDAD-F 61
Query: 111 ESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQ 170
+ L+V+G A G DN D+ A T G + P T+ AE I L + R++
Sbjct: 62 LQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRA 121
Query: 171 ADASVKAGK---WQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-Q 226
ADA V++G+ WQ ++ G L T+ +G G +G +A R +G G + H A
Sbjct: 122 ADAFVRSGQFRGWQ-PRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALD 180
Query: 227 ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286
+ G+ V+ E +++DFI L +PL T + N E ++ G +VN RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 287 VDEEALVRALDSGIISQAALDVFTEEPPAK-------DSKLVLHENVTVTPHLGASTTXX 339
VDE A++ AL+ G + A DVF E A+ D L+ H N TPH+G++
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 340 XXXXXXXXXXXXXXXLKGELAATAVN 365
L GE AVN
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVN 326
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 111/218 (50%), Gaps = 4/218 (1%)
Query: 123 AGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQR 182
AG+G D++DL AA G V +N ++ AE + + + RN V G+W
Sbjct: 99 AGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNV 158
Query: 183 N--KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGLV- 238
Y L GKT+ +G G++G + +R K G N++ HD A + + TG V
Sbjct: 159 AGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVE 218
Query: 239 SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298
E + D I ++MPLT T MFN E K+KKGV IVN ARG +++ +A+V A++S
Sbjct: 219 DLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVES 278
Query: 299 GIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGAST 336
G I + DV+ +P KD N +TPH +T
Sbjct: 279 GHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 316
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 119/236 (50%), Gaps = 4/236 (1%)
Query: 105 VTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAM 164
V + + +++ LKV+ VGID++ L + G V P T AE ++LL
Sbjct: 63 VDKRILDAAGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTT 122
Query: 165 ARNIAQADASVKAGKWQRNK---YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH 221
R + +A VK G W K G L T+ ++G G++G +ARR K G+ +
Sbjct: 123 CRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLY 182
Query: 222 D-PYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280
+ + A VS E + +DFI + LTPAT + N + F K K+ +N
Sbjct: 183 TGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFIN 242
Query: 281 VARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGAST 336
++RG VV+++ L +AL SG I+ A LDV + EP + L+ +N + PH+G++T
Sbjct: 243 ISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSAT 298
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 122/267 (45%), Gaps = 12/267 (4%)
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
F + L+V+G A G DN D+ A T G + P T+ AE I L + R++
Sbjct: 62 FLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 121
Query: 170 QADASVKAGK---WQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA- 225
ADA V++G+ WQ ++ G L T+ +G G +G A R +G G + H A
Sbjct: 122 AADAFVRSGQFRGWQ-PRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKAL 180
Query: 226 QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGG 285
+ G+ V+ E +++DFI L +PL T + N E ++ G +VN RG
Sbjct: 181 DTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 240
Query: 286 VVDEEALVRALDSGIISQAALDVFTEEPPAK-------DSKLVLHENVTVTPHLGASTTX 338
VVDE A++ AL+ G + A DVF E A+ D L+ H N TPH+G++
Sbjct: 241 VVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 300
Query: 339 XXXXXXXXXXXXXXXXLKGELAATAVN 365
L GE AVN
Sbjct: 301 VRLEIERCAAQNILQALAGERPINAVN 327
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 149/293 (50%), Gaps = 14/293 (4%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYN---LSPEELCTKISLCDALIVRSGTKVTREV 109
K L+ E + + L+ L+ + ++ L E+L I + +RS T +T +V
Sbjct: 4 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 63
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
++A +L +G +G + VDL AA + G V NAP +NT + AE I L + R +
Sbjct: 64 I-NAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 122
Query: 170 QADASVKAGKWQRNKYVGVSLV--GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA 227
+A+A KA + NK S GK L ++G+G +GT++ A+ LG V +D +
Sbjct: 123 EANA--KAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKL 180
Query: 228 DRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287
AT V +S + ++ +D +SLH+P P+T + K G ++N +RG VV
Sbjct: 181 PLGNATQVQHLS--DLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVV 238
Query: 288 DEEALVRALDSGIISQAALDVFTEEPPAKD----SKLVLHENVTVTPHLGAST 336
D AL AL S ++ AA+DVF EP S L +NV +TPH+G ST
Sbjct: 239 DIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGST 291
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 112/226 (49%), Gaps = 14/226 (6%)
Query: 125 VGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK 184
VG+DN+D++ A E G + N P + A AEH + R D V +
Sbjct: 79 VGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP 138
Query: 185 YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAI 244
+G + + + V+G G +G + +G G VI +D + + + G + S ++
Sbjct: 139 TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEK-KGYYVDSLDDLY 197
Query: 245 STADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQA 304
AD ISLH+P PA M NDE+ KMK+ V IVNV+RG +VD +A++R LDSG I
Sbjct: 198 KQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGY 257
Query: 305 ALDVFTEE-------------PPAKDSKLVLHENVTVTPHLGASTT 337
A+DV+ E P A+ + L+ NV VTPH TT
Sbjct: 258 AMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTT 303
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 134/282 (47%), Gaps = 23/282 (8%)
Query: 75 NVDCSYN---LSPEELCTKISL-CDALIVRSGTKVTREVFES--SAGRLKVVGRAGVGID 128
++D Y L+PE K++ D ++V T + ++ AG K+ R VG+D
Sbjct: 26 DIDVDYTDKLLTPE--TAKLAKGADGVVVYQQLDYTADTLQALADAGVTKMSLR-NVGVD 82
Query: 129 NVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGV 188
N+D+ A E G + N P + A AEH + R + D + + +G
Sbjct: 83 NIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLRQDKRMDEKMAKRDLRWAPTIGR 142
Query: 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTAD 248
+ + + V+G G +G R +G G VIA+D + + + G + S ++ AD
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKNPELEK-KGYYVDSLDDLYKQAD 201
Query: 249 FISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDV 308
ISLH+P PA M ND++ +MK GV IVN +RG +VD +A++R LDSG I +D
Sbjct: 202 VISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDT 261
Query: 309 FTEE-------------PPAKDSKLVLHENVTVTPHLGASTT 337
+ +E P + + L+ NV VTPH TT
Sbjct: 262 YEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTT 303
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 111/226 (49%), Gaps = 14/226 (6%)
Query: 125 VGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK 184
VG+DN+D++ A E G + N P + A AEH + R D V +
Sbjct: 79 VGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP 138
Query: 185 YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAI 244
+G + + + V+G G +G + +G G VI +D + + + G + S ++
Sbjct: 139 TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEK-KGYYVDSLDDLY 197
Query: 245 STADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQA 304
AD ISLH+P PA M NDE+ KMK+ V IVNV+RG +VD +A++R LDSG I
Sbjct: 198 KQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGY 257
Query: 305 ALDVFTEE-------------PPAKDSKLVLHENVTVTPHLGASTT 337
A+DV+ E P A+ + L+ NV VTP TT
Sbjct: 258 AMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTT 303
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 127/258 (49%), Gaps = 4/258 (1%)
Query: 82 LSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCL 141
L+P + ++ + L V + +T EV LK + VG D++D +AA G
Sbjct: 60 LTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIK 119
Query: 142 VVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQR---NKYVGVSLVGKTLAVM 198
V++ P + A AE L+ R +AD V++G W + +G L G+ L +
Sbjct: 120 VLHTPDVLSDACAEIAXLLVLNACRRGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIF 179
Query: 199 GFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTP 258
G G++G +A RA+G G+ + H+ + + + + + +D + P P
Sbjct: 180 GXGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRP 239
Query: 259 ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDS 318
+ + K+ +G ++N++RG +++++AL+ AL S + A LDVF E PA D
Sbjct: 240 ELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANE-PAIDP 298
Query: 319 KLVLHENVTVTPHLGAST 336
+ +N+ +TPH+G++T
Sbjct: 299 RYRSLDNIFLTPHIGSAT 316
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 7/223 (3%)
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASV 175
+L++V VG+D VDL E G V N P T A+ I L+ A+ R I + D V
Sbjct: 87 KLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYV 146
Query: 176 KAGKWQRNKY-VGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG 234
+ G W+ + + GK + ++G G++G VA RA+ + ++++ +
Sbjct: 147 RRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI---SYFSRSKKPNTNY 203
Query: 235 VGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKM-KKGVRIVNVARGGVVDEEALV 293
S E S +D + + PLTP T+ + N E + KGV ++N+ RG VDE LV
Sbjct: 204 TYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGV-LINIGRGPHVDEPELV 262
Query: 294 RALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGAST 336
AL G + A LDVF EP + KL ENV + PH+G+ T
Sbjct: 263 SALVEGRLGGAGLDVFEREPEVPE-KLFGLENVVLLPHVGSGT 304
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 118/244 (48%), Gaps = 19/244 (7%)
Query: 109 VFES-SAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARN 167
VFE A +K + VG DN+D++A ++G + N P + A AE + + RN
Sbjct: 60 VFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRN 119
Query: 168 IAQADASVKAGKWQR-NKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ 226
+ + A ++AG +++ ++G L +T+ VMG G +G + KG G VIA+DPY
Sbjct: 120 MGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM 179
Query: 227 ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286
+ VS E+ +D I LH+P + + N+ AF MK G ++N AR +
Sbjct: 180 --KGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNL 237
Query: 287 VDEEALVRALDSGIISQAALDVFTEEP--------------PAKDSKLVLHENVTVTPHL 332
+D +A++ L SG ++ +D + E P D L + NV ++PH+
Sbjct: 238 IDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGM-PNVVLSPHI 296
Query: 333 GAST 336
T
Sbjct: 297 AYYT 300
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 120/254 (47%), Gaps = 12/254 (4%)
Query: 117 LKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVK 176
L ++ GVG D VDL+ A V P A+ GIAL A+ R + D V+
Sbjct: 94 LGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVR 153
Query: 177 AGKWQRNKYV--GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG 234
G+W + + G S GK + V+G G++G +A RA+ G +V +R+ +G
Sbjct: 154 EGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSV------RYWNRSTLSG 207
Query: 235 VGLVSFEEAISTA---DFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEA 291
V ++ + + A D +++ + + AT + + + +VNVARG VVDE+A
Sbjct: 208 VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDA 267
Query: 292 LVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTXXXXXXXXXXXXXX 351
L+ AL SG I+ A LDVF EP + S+ N + PH G++T
Sbjct: 268 LIEALKSGTIAGAGLDVFVNEPAIR-SEFHTTPNTVLXPHQGSATVETRXAXGKLVLANL 326
Query: 352 XXXLKGELAATAVN 365
GE A VN
Sbjct: 327 AAHFAGEKAPNTVN 340
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 119/228 (52%), Gaps = 13/228 (5%)
Query: 117 LKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVK 176
LKV AG G D +DL A E G N+ A A ++ + L+ ++ R + ++ + +
Sbjct: 81 LKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAAR 140
Query: 177 AGKWQRNKYVGVSL-------VGKTLAVMGFGKVGTEVARRA-KGLGMNVIAHD-PYAQA 227
G + V + + G L +G G + E+AR+A GLGM ++ +D A A
Sbjct: 141 TGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADA 200
Query: 228 DRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFK-MKKGVRIVNVARGG 285
+ +A G V S EE +D +S+ +P T + DEAFF MK G RIVN ARG
Sbjct: 201 ETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLI-DEAFFAAMKPGSRIVNTARGP 259
Query: 286 VVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLG 333
V+ ++AL+ AL SG + A LDV EP +L+ ++VT+T H+G
Sbjct: 260 VISQDALIAALKSGKLLSAGLDVHEFEPQVS-KELIEMKHVTLTTHIG 306
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 119/228 (52%), Gaps = 13/228 (5%)
Query: 117 LKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVK 176
LKV AG G D +DL A E G N+ A A ++ + L+ ++ R + ++ + +
Sbjct: 81 LKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAAR 140
Query: 177 AGKWQRNKYVGVSL-------VGKTLAVMGFGKVGTEVARRA-KGLGMNVIAHD-PYAQA 227
G + V + + G L +G G + E+AR+A GLGM ++ +D A A
Sbjct: 141 TGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADA 200
Query: 228 DRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFK-MKKGVRIVNVARGG 285
+ +A G V S EE +D +S+ +P T + DEAFF MK G RIVN ARG
Sbjct: 201 ETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLI-DEAFFAAMKPGSRIVNTARGP 259
Query: 286 VVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLG 333
V+ ++AL+ AL SG + A LDV EP +L+ ++VT+T H+G
Sbjct: 260 VISQDALIAALKSGKLLSAGLDVHEFEPQVS-KELIEMKHVTLTTHIG 306
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 119/228 (52%), Gaps = 13/228 (5%)
Query: 117 LKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVK 176
LKV AG G D +DL A E G N+ A A ++ + L+ ++ R + ++ + +
Sbjct: 81 LKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAAR 140
Query: 177 AGKWQRNKYVGVSL-------VGKTLAVMGFGKVGTEVARRA-KGLGMNVIAHD-PYAQA 227
G + V + + G L +G G + E+AR+A GLGM ++ +D A A
Sbjct: 141 TGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADA 200
Query: 228 DRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFK-MKKGVRIVNVARGG 285
+ +A G V S EE +D +S+ +P T + DEAFF MK G RIVN ARG
Sbjct: 201 ETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLI-DEAFFAAMKPGSRIVNTARGP 259
Query: 286 VVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLG 333
V+ ++AL+ AL SG + A LDV EP +L+ ++VT+T H+G
Sbjct: 260 VISQDALIAALKSGKLLSAGLDVHEFEPNVS-KELIEMKHVTLTTHIG 306
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 4/229 (1%)
Query: 112 SSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
+ A LK+ AG+G D+VDL +A + V N+I+ AEH + ++ ++ RN +
Sbjct: 109 AKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPS 168
Query: 172 DASVKAGKWQRNKYV--GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY--AQA 227
+ G W V L + + G++G V RR +++ D + ++
Sbjct: 169 HEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES 228
Query: 228 DRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287
+ E+ D ++L+ PL P T M NDE K+G IVN ARG +
Sbjct: 229 VEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLC 288
Query: 288 DEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGAST 336
D +A+ RAL+SG ++ A DV+ +P KD +TPH+ +T
Sbjct: 289 DRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTT 337
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 4/229 (1%)
Query: 112 SSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
+ A LK+ AG+G D+VDL +A + V N+I+ AEH + ++ ++ RN +
Sbjct: 110 AKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPS 169
Query: 172 DASVKAGKWQRNKYV--GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY--AQA 227
+ G W V L + + G++G V RR +++ D + ++
Sbjct: 170 HEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES 229
Query: 228 DRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287
+ E+ D ++L+ PL P T M NDE K+G IVN ARG +
Sbjct: 230 VEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLC 289
Query: 288 DEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGAST 336
D +A+ RAL+SG ++ A DV+ +P KD +TPH+ +T
Sbjct: 290 DRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTT 338
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 4/229 (1%)
Query: 112 SSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
+ A LK+ AG+G D+VDL +A + V N+I+ AEH + ++ ++ RN +
Sbjct: 110 AKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPS 169
Query: 172 DASVKAGKWQRNKYV--GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY--AQA 227
+ G W V L + + G++G V RR +++ D + ++
Sbjct: 170 HEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES 229
Query: 228 DRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287
+ E+ D ++L+ PL P T M NDE K+G IVN ARG +
Sbjct: 230 VEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLC 289
Query: 288 DEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGAST 336
D +A+ RAL+SG ++ A DV+ +P KD +TPH+ +T
Sbjct: 290 DRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTT 338
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 109/229 (47%), Gaps = 4/229 (1%)
Query: 112 SSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
+ A +LK+ AG+G D+VDL AA ++ V N+ + AEH + ++ + RN +
Sbjct: 110 AKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPS 169
Query: 172 DASVKAGKWQRNKYVGVS--LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY--AQA 227
+ G W V S + G + + G++G V R M++ D + +A
Sbjct: 170 HDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEA 229
Query: 228 DRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287
+ E+ D ++L+ PL P T M NDE K+G +VN ARG +
Sbjct: 230 VEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLC 289
Query: 288 DEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGAST 336
D +A+VRAL+SG ++ A DV+ +P D + +TPH+ ++
Sbjct: 290 DRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISGTS 338
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 109/229 (47%), Gaps = 4/229 (1%)
Query: 112 SSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
+ A +LK+ AG+G D+VDL AA ++ V N+ + AEH + ++ + RN +
Sbjct: 109 AKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPS 168
Query: 172 DASVKAGKWQRNKYVGVS--LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY--AQA 227
+ G W V S + G + + G++G V R M++ D + +A
Sbjct: 169 HDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEA 228
Query: 228 DRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287
+ E+ D ++L+ PL P T M NDE K+G +VN ARG +
Sbjct: 229 VEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLC 288
Query: 288 DEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGAST 336
D +A+VRAL+SG ++ A DV+ +P D + +TPH+ ++
Sbjct: 289 DRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISGTS 337
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 2/227 (0%)
Query: 107 REVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMAR 166
+ + +LK V G+D + L A G +V N + A +E +A + ++ R
Sbjct: 52 KTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVR 111
Query: 167 NIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ 226
A + + + +L G+ L + G G++G +A +A LGM+VI +
Sbjct: 112 GYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGH 171
Query: 227 -ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGG 285
AD T V + +A++TA+FI +PLTP T +F+ E F + K+ ++N+ RG
Sbjct: 172 PADHFHET-VAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGP 230
Query: 286 VVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHL 332
VD AL+ ALD +S AALDV EP D L ++V +TPH+
Sbjct: 231 AVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHI 277
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 19/231 (8%)
Query: 117 LKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVK 176
+K +G VG + ++ ++ LV N P + A AE + + R I + +
Sbjct: 71 VKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMD 130
Query: 177 AGK---WQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARAT 233
W N + + T+ ++G G +G+ VA +G VIA+D +
Sbjct: 131 HDHDFTWPSN-LISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYD--VAYNPEFEP 187
Query: 234 GVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALV 293
+ F+ + AD +SLH PL P+T M ++ +MKK ++N ARG +VD AL+
Sbjct: 188 FLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALI 247
Query: 294 RALDSGIISQAALDVFT-------------EEPPAKDSKLVLHENVTVTPH 331
+AL G I+ A LD E P L NV +TPH
Sbjct: 248 KALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPH 298
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 19/247 (7%)
Query: 105 VTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHG--CLVVNAPTANTIAAAEHGIALLT 162
+T+E + A +LK+V AGVG D++DL + G V+ +N ++ AEH + +
Sbjct: 75 ITKERIDK-AKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTML 133
Query: 163 AMARNIAQADASVKAGKWQ-----RNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMN 217
+ RN A + W+ ++ Y + GKT+A +G G++G V R
Sbjct: 134 VLVRNFVPAHEQIINHDWEVAAIAKDAY---DIEGKTIATIGAGRIGYRVLERLVPFNPK 190
Query: 218 VIAHDPYAQADRARATGVG---LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKK 274
+ + Y + VG + + EE ++ AD ++++ PL T + N E K KK
Sbjct: 191 ELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK 250
Query: 275 GVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEP-----PAKDSKLVLHENVTVT 329
G +VN ARG + E + AL+SG + DV+ +P P +D + +T
Sbjct: 251 GAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMT 310
Query: 330 PHLGAST 336
PH +T
Sbjct: 311 PHYSGTT 317
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 19/247 (7%)
Query: 105 VTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHG--CLVVNAPTANTIAAAEHGIALLT 162
+T+E + A +LK+V AGVG D++DL + G V+ +N ++ AEH + +
Sbjct: 74 ITKERIDK-AKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTML 132
Query: 163 AMARNIAQADASVKAGKWQ-----RNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMN 217
+ RN A + W+ ++ Y + GKT+A +G G++G V R
Sbjct: 133 VLVRNFVPAHEQIINHDWEVAAIAKDAY---DIEGKTIATIGAGRIGYRVLERLVPFNPK 189
Query: 218 VIAHDPYAQADRARATGVG---LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKK 274
+ + Y + VG + + EE ++ AD ++++ PL T + N E K KK
Sbjct: 190 ELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK 249
Query: 275 GVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEP-----PAKDSKLVLHENVTVT 329
G +VN ARG + E + AL+SG + DV+ +P P +D + +T
Sbjct: 250 GAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMT 309
Query: 330 PHLGAST 336
PH +T
Sbjct: 310 PHYSGTT 316
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 114/246 (46%), Gaps = 29/246 (11%)
Query: 95 DALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAA 154
D L+VRS T+V+R S ++ VG +G D++DL E G +AP N
Sbjct: 39 DVLLVRSVTEVSRAALAGSP--VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVV 96
Query: 155 EHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGL 214
++ + L AMA + G L +T V+G G+VG + +GL
Sbjct: 97 DYVLGCLLAMA------------------EVRGADLAERTYGVVGAGQVGGRLVEVLRGL 138
Query: 215 GMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLT----PATSKMFNDEAFF 270
G V+ DP QA R VS E ++ AD ISLH PL T + ++
Sbjct: 139 GWKVLVCDPPRQA---REPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLA 195
Query: 271 KMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTP 330
++ G +VN +RG VVD +AL R L+ G + ALDV+ EP A D +L + TP
Sbjct: 196 ALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQA-DPELAAR-CLIATP 253
Query: 331 HLGAST 336
H+ +
Sbjct: 254 HIAGYS 259
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 8/186 (4%)
Query: 154 AEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKG 213
+E+ L ++ R + K WQ + Y G L G+TL ++G G +G +A K
Sbjct: 104 SEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQG--LKGRTLLILGTGSIGQHIAHTGKH 161
Query: 214 LGMNVIAHDPYAQADRARA---TGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFF 270
GM V+ +++ R RA L + + ++ AD I +P T T +F F
Sbjct: 162 FGMKVLG---VSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFE 218
Query: 271 KMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTP 330
K G + NV RG ++E L+ AL +G + A LDVF +EP DS L N+ +TP
Sbjct: 219 HCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITP 278
Query: 331 HLGAST 336
H A +
Sbjct: 279 HNSAYS 284
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 31/252 (12%)
Query: 90 KISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTAN 149
+++ DAL VRS TKV + + + VG A G D+VD + + G AP N
Sbjct: 37 ELNHADALXVRSVTKVNESLLSGTP--INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCN 94
Query: 150 TIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVAR 209
IA E+ + L +A +R+ G SL +T+ ++G G VG+ +
Sbjct: 95 AIAVVEYVFSALLXLA---------------ERD---GFSLRDRTIGIVGVGNVGSRLQT 136
Query: 210 RAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLT---PATSKMFND 266
R + LG+ + DP AR + +E + AD ++ H PL P + D
Sbjct: 137 RLEALGIRTLLCDP---PRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLAD 193
Query: 267 EAFFK-MKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHEN 325
E + +K G ++N RG VVD AL+ L++G LDV+ EP D + L E
Sbjct: 194 ETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP---DLNVALLEA 250
Query: 326 VTV-TPHLGAST 336
V + T H+ T
Sbjct: 251 VDIGTSHIAGYT 262
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 114/259 (44%), Gaps = 20/259 (7%)
Query: 95 DALIVRSGTKVTREVFE--SSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIA 152
DA+I+R ++ + G ++ R G D++D A E G + P + A
Sbjct: 47 DAVILRGNCFANKQNLDIYKKLGVKYILTRTA-GTDHIDKEYAKELGFPMAFVPRYSPNA 105
Query: 153 AAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLV-GKTLAVMGFGKVGTEVARRA 211
AE + + R+ A + ++ + ++ V T+ V+G G++G A+
Sbjct: 106 IAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIF 165
Query: 212 KGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFK 271
G+G VI D + + VS +E + +D I++H P + + K
Sbjct: 166 HGMGATVIGEDVFEI--KGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKK 223
Query: 272 MKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPP--AKD-----------S 318
MK G +VN ARG +VD EA++ A++SG + DV E KD
Sbjct: 224 MKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFE 283
Query: 319 KLV-LHENVTVTPHLGAST 336
KLV L+ V +TPHLG+ T
Sbjct: 284 KLVDLYPRVLITPHLGSYT 302
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 4/190 (2%)
Query: 127 IDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGK--WQRNK 184
++N + G VV AE G+ A+AR I AD + + G W
Sbjct: 108 LNNXPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEG 167
Query: 185 YVGVSLV-GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEA 243
L+ G + ++GFG +G + R G + DP+ GV S E+
Sbjct: 168 NASARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLEENGVEPASLEDV 227
Query: 244 ISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303
++ +DFI + +T + EAF ++G + ++R VVD +AL A+ SG I
Sbjct: 228 LTKSDFIFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIV- 286
Query: 304 AALDVFTEEP 313
AA DV+ EEP
Sbjct: 287 AASDVYPEEP 296
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 9/222 (4%)
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASV 175
R K + G+D++D++ E+ L NA A +I+ AEH ALL A A+NI + +
Sbjct: 49 RTKXIQAISAGVDHIDVNGIPENVVLCSNA-GAYSISVAEHAFALLLAHAKNILENNELX 107
Query: 176 KAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGV 235
KAG ++++ L GK L ++G+G +G VA AK G VIA Y ++ + V
Sbjct: 108 KAGIFRQSP--TTLLYGKALGILGYGGIGRRVAHLAKAFGXRVIA---YTRSSVDQNVDV 162
Query: 236 GLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRA 295
S + +DF+ + +PLT T N +K + IVNVAR VV + +
Sbjct: 163 ISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADVVSKPDXIGF 222
Query: 296 LDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTT 337
L DV+ EP ++ L N ++PH+ +
Sbjct: 223 LKERSDVWYLSDVWWNEPEITETNL---RNAILSPHVAGGXS 261
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Query: 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSF---EEAIS----T 246
++ + G G +G +VA + G P R+R + G+ S+ EE + T
Sbjct: 141 SVGIXGAGVLGAKVAESLQAWGF------PLRCWSRSRKSWPGVESYVGREELRAFLNQT 194
Query: 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAAL 306
I+L +P T T + N E ++ G ++N+ARG V E L+ ALDSG + A L
Sbjct: 195 RVLINL-LPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXL 253
Query: 307 DVFTEEPPAKDSKLVLHENVTVTPHLGAST 336
DVF++EP ++S L H V TPH+ A T
Sbjct: 254 DVFSQEPLPQESPLWRHPRVAXTPHIAAVT 283
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 9/219 (4%)
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASV 175
RLK + G+D++ + H + NA +N A AE +ALL A + I Q
Sbjct: 50 RLKFIQVVTAGLDHLPWESIPPHVTVAGNA-GSNADAVAEFALALLLAPYKRIIQYGEKX 108
Query: 176 KAGKWQRNKYVGVSLV-GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG 234
K G + R+ V + L+ G+ +AV+G G++GT V + LG V + R T
Sbjct: 109 KRGDYGRD--VEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTN 166
Query: 235 VGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVR 294
S EEA+ A +PL T + + + VNV R V+D + ++R
Sbjct: 167 ----SLEEALREARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLR 222
Query: 295 ALDSGIISQAALDVFT-EEPPAKDSKLVLHENVTVTPHL 332
L A DV+ AKD++ NV TP +
Sbjct: 223 ILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWV 261
>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase
pdb|1V8B|B Chain B, Crystal Structure Of A Hydrolase
pdb|1V8B|C Chain C, Crystal Structure Of A Hydrolase
pdb|1V8B|D Chain D, Crystal Structure Of A Hydrolase
Length = 479
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAISTADF 249
GK + + G+G VG A KGLG V DP A +A G +V+ +E + DF
Sbjct: 257 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPIC-AIQAVMEGFNVVTLDEIVDKGDF 315
Query: 250 ISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRAL 296
+ E KMK + N+ G D+E V L
Sbjct: 316 ----FITCTGNVDVIKLEHLLKMKNNAVVGNI---GHFDDEIQVNEL 355
>pdb|2RIR|A Chain A, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|B Chain B, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|C Chain C, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|D Chain D, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|E Chain E, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|F Chain F, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|G Chain G, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|H Chain H, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
Length = 300
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFE 241
++ ++ G +AV+G G+ G +AR LG NV + A AR T GLV F
Sbjct: 149 QHTDYTIHGSQVAVLGLGRTGXTIARTFAALGANVKV-GARSSAHLARITEXGLVPFH 205
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 168 IAQADASVKAGKW---QRNKYVGVSLVGKTLAVMGFGKVGTEVAR-RAKGLGMNVIA 220
+A+ DA+ + + + K +G+ L GKT+A+ G+G G +A+ ++ GM V+A
Sbjct: 184 VARMDATARGASYTVREAAKALGMDLKGKTIAIQGYGNAGYYMAKIMSEEYGMKVVA 240
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEA 243
K G+ L G + V G G+VG VA A+ LGM V+A AT +G + E
Sbjct: 210 KRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAV----------ATSMGGMYAPEG 259
Query: 244 ISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVD 288
+ A+ +S + E F ++ V +V AR G +D
Sbjct: 260 LDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEV-LVLAAREGALD 303
>pdb|3N58|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|C Chain C, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|D Chain D, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
Length = 464
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQADRARATGVGLVSFEEAIS 245
V + GK V G+G VG A+ G G + V DP A +A G +V+ ++A S
Sbjct: 243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPIC-ALQAAMDGFEVVTLDDAAS 301
Query: 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRAL 296
TAD + T + + KMK + N+ G D E V AL
Sbjct: 302 TADIVV----TTTGNKDVITIDHMRKMKDMCIVGNI---GHFDNEIQVAAL 345
>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|B Chain B, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|C Chain C, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|D Chain D, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
Length = 436
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAIS 245
V + GKT V G+G VG A +G G V+ DP A +A G ++ E+ +
Sbjct: 207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDP-INALQAAMEGYQVLLVEDVVE 265
Query: 246 TAD-FISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRAL 296
A F++ T + E F +M+ + N+ G D E V L
Sbjct: 266 EAHIFVT-----TTGNDDIITSEHFPRMRDDAIVCNI---GHFDTEIQVAWL 309
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIA-HDPYAQADRARATGVGLVSFEEAISTADFI 250
GKT+A+ G G VG A + +G VIA D A R V L+ + ++ +
Sbjct: 210 GKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALV 269
Query: 251 SLHMPLTPATSKMF--NDEAFFKMKKGV----RIVNVARGGVVDEEALVRA 295
L T + F N +A FK+ + I NV RG D LV+A
Sbjct: 270 EL---FTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRG---DNAGLVKA 314
>pdb|2CZG|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2CZG|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2DWC|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
pdb|2DWC|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
Length = 433
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA 227
+ + ++G G++G E+A A+ LG+ V+A D YA A
Sbjct: 20 QKILLLGSGELGKEIAIEAQRLGVEVVAVDRYANA 54
>pdb|3D4O|A Chain A, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|B Chain B, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|C Chain C, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|D Chain D, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
Length = 293
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNV 218
++ ++ G +AV+G G+VG VAR+ LG V
Sbjct: 147 QHTDFTIHGANVAVLGLGRVGXSVARKFAALGAKV 181
>pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ8|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ9|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJ9|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJI|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJI|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJJ|A Chain A, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJJ|B Chain B, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJQ|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
pdb|1KJQ|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
Length = 391
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 197 VMGFGKVGTEVARRAKGLGMNVIAHDPYAQA 227
++G G++G EVA + LG+ VIA D YA A
Sbjct: 16 LLGSGELGKEVAIECQRLGVEVIAVDRYADA 46
>pdb|3D64|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3D64|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3GLQ|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
pdb|3GLQ|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
Length = 494
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAIS 245
V + GK V G+G VG A+ +GLG V DP A +A G +V+ E A
Sbjct: 273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPIC-ALQAAMEGYRVVTMEYAAD 331
Query: 246 TADFI 250
AD
Sbjct: 332 KADIF 336
>pdb|1EYZ|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EYZ|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EZ1|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
pdb|1EZ1|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
Length = 392
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 197 VMGFGKVGTEVARRAKGLGMNVIAHDPYAQA 227
++G G++G EVA + LG+ VIA D YA A
Sbjct: 17 LLGSGELGKEVAIECQRLGVEVIAVDRYADA 47
>pdb|3OND|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3OND|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3ONE|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONE|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONF|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
pdb|3ONF|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
Length = 488
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAIS 245
V + GK V G+G VG A K G VI DP A +A G+ +++ E+ +S
Sbjct: 261 VMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPIC-ALQATMEGLQVLTLEDVVS 319
Query: 246 TAD-FISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283
AD F++ T + + KMK + N+
Sbjct: 320 EADIFVT-----TTGNKDIIMLDHMKKMKNNAIVCNIGH 353
>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|B Chain B, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|C Chain C, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|D Chain D, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
Length = 339
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHD-PYAQADRARATGVGLVSFEEAISTADFI 250
G+ +A+ G G +G + AK +G+NV+A D + + A+ G LV A F+
Sbjct: 165 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFM 224
Query: 251 -----SLHMPLTPATSKMFNDEAFFKMKKG 275
+H + A SK A+ +++G
Sbjct: 225 KEKVGGVHAAVVTAVSKPAFQSAYNSIRRG 254
>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|2H5L|A Chain A, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|B Chain B, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|C Chain C, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|D Chain D, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|E Chain E, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|F Chain F, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|G Chain G, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|H Chain H, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
Length = 431
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAIS 245
V + GK V G+G VG A+ +G G VI DP A +A G + + +EA
Sbjct: 208 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP-INALQAAMEGYEVTTMDEACK 266
Query: 246 TAD-FISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303
+ F++ T + F +MK + N+ G D E V+ L+ + +
Sbjct: 267 EGNIFVT-----TTGCVDIILGRHFEQMKDDAIVCNI---GHFDVEIDVKWLNENAVEK 317
>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|H Chain H, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|V Chain V, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|H Chain H, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|V Chain V, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|H Chain H, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|O Chain O, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|H Chain H, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|V Chain V, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|H Chain H, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|V Chain V, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|H Chain H, Proteasome Inhibition By Fellutamide B
pdb|3D29|V Chain V, Proteasome Inhibition By Fellutamide B
pdb|3E47|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|H Chain H, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|V Chain V, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|I Chain I, Proteasome Activator Complex
pdb|1VSY|W Chain W, Proteasome Activator Complex
pdb|3L5Q|M Chain M, Proteasome Activator Complex
pdb|3L5Q|Y Chain Y, Proteasome Activator Complex
pdb|3MG4|H Chain H, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|V Chain V, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|H Chain H, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|V Chain V, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|H Chain H, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|V Chain V, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|H Chain H, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|V Chain V, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|H Chain H, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|V Chain V, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|H Chain H, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|V Chain V, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|H Chain H, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|V Chain V, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|H Chain H, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|V Chain V, 20s Yeast Proteasome In Complex With Glidobactin
Length = 222
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 516 DVSLEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSR 575
D++ E +I L Q GI +GS +NV+V M +G+ A + +T V EE +
Sbjct: 145 DLTKEEAIKLASDAIQAGIWNDLGS---GSNVDVCVMEIGKDAEYLRNYLTPNVREEKQK 201
Query: 576 EVLKKIGETPAIEEFV 591
G T ++E +
Sbjct: 202 SYKFPRGTTAVLKESI 217
>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With
Neplanocin
Length = 432
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAIS 245
V + GK V G+G VG A+ +G G VI DP A +A G + + +EA
Sbjct: 209 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP-INALQAAMEGYEVTTMDEACQ 267
Query: 246 TAD-FISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303
+ F++ T + F +MK + N+ G D E V+ L+ + +
Sbjct: 268 EGNIFVT-----TTGCIDIILGRHFEQMKDDAIVCNI---GHFDVEIDVKWLNENAVEK 318
>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|B Chain B, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|C Chain C, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|D Chain D, K185n Mutated S-adenosylhomocysteine Hydrolase
Length = 431
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAIS 245
V + GK V G+G VG A+ +G G VI DP A +A G + + +EA
Sbjct: 208 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP-INALQAAMEGYEVTTMDEACK 266
Query: 246 TAD-FISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303
+ F++ T + F +MK + N+ G D E V+ L+ + +
Sbjct: 267 EGNIFVT-----TTGCVDIILGRHFEQMKDDAIVCNI---GHFDVEIDVKWLNENAVEK 317
>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|B Chain B, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|C Chain C, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|D Chain D, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
Length = 435
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAIS 245
V + GK V G+G VG A+ +G G VI DP A +A G + + +EA
Sbjct: 212 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP-INALQAAMEGYEVTTMDEACQ 270
Query: 246 TAD-FISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303
+ F++ T + F +MK + N+ G D E V+ L+ + +
Sbjct: 271 EGNIFVT-----TTGCIDIILGRHFEQMKDDAIVCNI---GHFDVEIDVKWLNENAVEK 321
>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|2 Chain 2, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 261
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 516 DVSLEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSR 575
D++ E +I L Q GI +GS +NV+V M +G+ A + +T V EE +
Sbjct: 174 DLTKEEAIKLASDAIQAGIWNDLGS---GSNVDVCVMEIGKDAEYLRNYLTPNVREEKQK 230
Query: 576 EVLKKIGETPAIEEFV 591
G T ++E +
Sbjct: 231 SYKFPRGTTAVLKESI 246
>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|H Chain H, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|V Chain V, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|H Chain H, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|V Chain V, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3UN4|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4G4S|I Chain I, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 232
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 516 DVSLEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSR 575
D++ E +I L Q GI +GS +NV+V M +G+ A + +T V EE +
Sbjct: 145 DLTKEEAIKLASDAIQAGIWNDLGS---GSNVDVCVMEIGKDAEYLRNYLTPNVREEKQK 201
Query: 576 EVLKKIGETPAIEEFV 591
G T ++E +
Sbjct: 202 SYKFPRGTTAVLKESI 217
>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|C Chain C, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|B Chain B, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|D Chain D, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
Length = 339
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHD-PYAQADRARATGVGLVSFEEAISTADFI 250
G+ +A+ G G G + AK +G+NV+A D + + A+ G LV A F+
Sbjct: 165 GEWVAIYGIGGFGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFM 224
Query: 251 -----SLHMPLTPATSKMFNDEAFFKMKKG 275
+H + A SK A+ +++G
Sbjct: 225 KEKVGGVHAAVVTAVSKPAFQSAYNSIRRG 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,538,751
Number of Sequences: 62578
Number of extensions: 547145
Number of successful extensions: 1612
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1416
Number of HSP's gapped (non-prelim): 113
length of query: 595
length of database: 14,973,337
effective HSP length: 104
effective length of query: 491
effective length of database: 8,465,225
effective search space: 4156425475
effective search space used: 4156425475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)