Query 046427
Match_columns 595
No_of_seqs 477 out of 2932
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 11:59:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01327 PGDH D-3-phosphoglyc 100.0 7E-112 2E-116 940.8 60.6 522 55-595 1-525 (525)
2 PRK13581 D-3-phosphoglycerate 100.0 1E-110 2E-115 931.9 60.7 523 54-595 1-526 (526)
3 KOG0068 D-3-phosphoglycerate d 100.0 1.1E-85 2.3E-90 662.0 31.3 396 55-454 8-406 (406)
4 PRK11790 D-3-phosphoglycerate 100.0 2.1E-75 4.6E-80 629.9 43.3 394 50-593 7-408 (409)
5 COG0111 SerA Phosphoglycerate 100.0 1E-72 2.2E-77 589.6 33.4 315 52-370 2-319 (324)
6 PRK15409 bifunctional glyoxyla 100.0 4E-70 8.7E-75 571.9 36.7 313 52-366 1-320 (323)
7 COG1052 LdhA Lactate dehydroge 100.0 1.2E-68 2.5E-73 558.6 34.0 314 52-366 1-323 (324)
8 PRK08410 2-hydroxyacid dehydro 100.0 5.7E-67 1.2E-71 546.3 34.9 298 55-358 2-310 (311)
9 PRK13243 glyoxylate reductase; 100.0 1.1E-66 2.5E-71 548.9 36.9 313 52-366 1-323 (333)
10 PRK06487 glycerate dehydrogena 100.0 1.4E-65 3.1E-70 537.1 35.0 303 55-365 2-317 (317)
11 PLN02306 hydroxypyruvate reduc 100.0 1.8E-64 3.8E-69 539.1 36.2 339 49-388 11-380 (386)
12 PRK06932 glycerate dehydrogena 100.0 3.1E-64 6.7E-69 526.1 33.1 273 81-359 32-314 (314)
13 PLN02928 oxidoreductase family 100.0 2.7E-63 5.8E-68 525.5 36.3 311 48-363 13-343 (347)
14 PLN03139 formate dehydrogenase 100.0 1.2E-62 2.6E-67 523.6 36.3 291 68-359 69-368 (386)
15 PRK07574 formate dehydrogenase 100.0 9.8E-63 2.1E-67 524.5 35.2 312 51-363 44-365 (385)
16 PRK08605 D-lactate dehydrogena 100.0 6.9E-60 1.5E-64 497.4 32.6 312 51-365 1-332 (332)
17 PRK12480 D-lactate dehydrogena 100.0 1.7E-59 3.8E-64 493.2 32.6 308 54-365 2-330 (330)
18 KOG0069 Glyoxylate/hydroxypyru 100.0 5.6E-57 1.2E-61 465.7 26.6 282 82-364 49-334 (336)
19 PRK15438 erythronate-4-phospha 100.0 3.5E-56 7.6E-61 472.3 32.5 273 54-356 1-279 (378)
20 PRK00257 erythronate-4-phospha 100.0 1.7E-55 3.6E-60 468.5 32.4 284 54-365 1-288 (381)
21 PRK15469 ghrA bifunctional gly 100.0 2.6E-55 5.7E-60 458.0 29.5 267 91-366 36-308 (312)
22 PRK06436 glycerate dehydrogena 100.0 1.3E-54 2.8E-59 450.5 31.9 283 55-366 2-290 (303)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 6E-46 1.3E-50 358.6 17.8 176 158-333 1-178 (178)
24 TIGR00719 sda_beta L-serine de 100.0 1.2E-39 2.5E-44 321.6 21.1 188 378-581 19-208 (208)
25 KOG0067 Transcription factor C 100.0 3E-31 6.4E-36 271.0 13.5 291 69-368 48-352 (435)
26 PRK06545 prephenate dehydrogen 99.9 4.8E-24 1E-28 227.7 7.5 331 193-582 1-351 (359)
27 PF00389 2-Hacid_dh: D-isomer 99.9 1.3E-21 2.7E-26 180.0 15.0 101 56-157 1-101 (133)
28 PTZ00075 Adenosylhomocysteinas 99.9 6.9E-21 1.5E-25 206.1 17.3 169 122-315 197-367 (476)
29 PRK08818 prephenate dehydrogen 99.8 5.2E-21 1.1E-25 203.4 7.6 314 191-580 3-354 (370)
30 TIGR02853 spore_dpaA dipicolin 99.8 7E-19 1.5E-23 182.2 12.4 164 91-284 52-242 (287)
31 PRK07417 arogenate dehydrogena 99.6 1.6E-15 3.6E-20 156.6 7.7 242 194-453 2-263 (279)
32 PLN02494 adenosylhomocysteinas 99.6 6.4E-15 1.4E-19 159.6 10.2 120 188-312 250-373 (477)
33 PRK08306 dipicolinate synthase 99.6 4.7E-14 1E-18 146.9 16.4 166 89-283 51-242 (296)
34 PLN02256 arogenate dehydrogena 99.5 7.7E-15 1.7E-19 153.2 6.9 238 190-445 34-286 (304)
35 COG0287 TyrA Prephenate dehydr 99.5 2.2E-14 4.7E-19 147.7 9.8 225 192-435 3-247 (279)
36 PRK07502 cyclohexadienyl dehyd 99.5 2.6E-14 5.7E-19 149.6 10.2 247 192-453 6-274 (307)
37 TIGR00936 ahcY adenosylhomocys 99.5 8.8E-14 1.9E-18 149.6 10.9 121 187-311 190-312 (406)
38 COG1760 SdaA L-serine deaminas 99.5 6.9E-17 1.5E-21 161.1 -12.5 197 378-594 51-253 (262)
39 PRK13403 ketol-acid reductoiso 99.5 7.8E-14 1.7E-18 144.4 8.9 93 188-281 12-105 (335)
40 PRK08507 prephenate dehydrogen 99.5 8.6E-14 1.9E-18 143.5 8.4 233 194-446 2-254 (275)
41 PRK08655 prephenate dehydrogen 99.4 2.9E-13 6.2E-18 148.3 8.8 232 193-446 1-253 (437)
42 PLN02712 arogenate dehydrogena 99.4 2.6E-13 5.5E-18 155.3 5.3 241 186-445 363-619 (667)
43 PRK05476 S-adenosyl-L-homocyst 99.3 3.9E-12 8.4E-17 137.7 11.0 154 122-294 155-312 (425)
44 PF03446 NAD_binding_2: NAD bi 99.3 6.6E-12 1.4E-16 119.6 9.2 114 193-308 2-118 (163)
45 PRK11199 tyrA bifunctional cho 99.3 5.7E-12 1.2E-16 135.5 9.1 255 151-453 68-339 (374)
46 PF00670 AdoHcyase_NAD: S-aden 99.3 2.7E-11 5.8E-16 114.2 10.3 104 187-294 18-123 (162)
47 PLN02712 arogenate dehydrogena 99.3 1E-11 2.2E-16 142.2 8.7 243 191-446 51-303 (667)
48 COG2084 MmsB 3-hydroxyisobutyr 99.2 2.9E-11 6.4E-16 124.2 10.5 119 193-313 1-126 (286)
49 PRK14806 bifunctional cyclohex 99.2 2.7E-11 5.9E-16 141.3 10.7 216 193-427 4-244 (735)
50 PRK11559 garR tartronate semia 99.2 1E-10 2.2E-15 121.8 10.7 121 193-313 3-127 (296)
51 TIGR01505 tartro_sem_red 2-hyd 99.2 1.1E-10 2.5E-15 121.2 10.6 108 194-301 1-112 (291)
52 PRK15461 NADH-dependent gamma- 99.1 2.7E-10 5.8E-15 118.9 11.0 113 193-307 2-118 (296)
53 PF02153 PDH: Prephenate dehyd 99.1 8.5E-12 1.8E-16 127.7 -0.4 224 207-446 1-245 (258)
54 PF03315 SDH_beta: Serine dehy 99.1 2.3E-11 4.9E-16 114.9 1.2 120 380-512 16-157 (157)
55 PRK12490 6-phosphogluconate de 99.1 5.1E-10 1.1E-14 116.9 11.3 111 194-307 2-117 (299)
56 PRK05479 ketol-acid reductoiso 99.1 3.3E-10 7.2E-15 119.0 8.5 95 188-284 13-109 (330)
57 cd00401 AdoHcyase S-adenosyl-L 99.0 7.5E-10 1.6E-14 119.8 10.7 104 187-294 197-302 (413)
58 PRK09599 6-phosphogluconate de 99.0 2E-09 4.2E-14 112.6 11.4 112 194-308 2-118 (301)
59 PRK15059 tartronate semialdehy 99.0 2.3E-09 5E-14 111.7 10.5 112 194-307 2-116 (292)
60 PRK15040 L-serine dehydratase 99.0 3.2E-09 6.9E-14 114.5 11.5 150 380-554 18-193 (454)
61 cd04902 ACT_3PGDH-xct C-termin 98.9 3.7E-09 7.9E-14 86.2 8.5 73 523-595 1-73 (73)
62 PLN02350 phosphogluconate dehy 98.9 5.1E-09 1.1E-13 115.8 11.0 120 194-314 8-139 (493)
63 PRK08293 3-hydroxybutyryl-CoA 98.9 2.7E-08 5.8E-13 103.4 15.5 174 193-387 4-206 (287)
64 PLN02545 3-hydroxybutyryl-CoA 98.9 4.3E-08 9.3E-13 102.2 15.0 108 193-303 5-139 (295)
65 PRK15023 L-serine deaminase; P 98.8 8.8E-09 1.9E-13 111.1 9.8 149 380-554 18-193 (454)
66 TIGR00872 gnd_rel 6-phosphoglu 98.8 1.7E-08 3.7E-13 105.5 10.8 107 193-301 1-112 (298)
67 PLN02858 fructose-bisphosphate 98.8 1.7E-08 3.6E-13 124.0 11.9 116 191-308 3-124 (1378)
68 KOG0409 Predicted dehydrogenas 98.8 1.4E-08 3E-13 103.4 9.0 112 190-301 33-149 (327)
69 PRK07066 3-hydroxybutyryl-CoA 98.8 1.1E-07 2.5E-12 100.0 16.2 174 193-387 8-205 (321)
70 TIGR00465 ilvC ketol-acid redu 98.8 1.5E-08 3.2E-13 106.5 9.1 95 190-286 1-97 (314)
71 TIGR01692 HIBADH 3-hydroxyisob 98.8 1.8E-08 3.9E-13 104.7 9.5 109 197-307 1-113 (288)
72 PRK09260 3-hydroxybutyryl-CoA 98.8 9.4E-08 2E-12 99.3 14.7 173 193-387 2-202 (288)
73 PRK05225 ketol-acid reductoiso 98.8 6.1E-09 1.3E-13 112.2 5.8 99 179-279 21-128 (487)
74 PLN02858 fructose-bisphosphate 98.8 2.8E-08 6.1E-13 122.0 12.0 107 192-298 324-434 (1378)
75 COG0499 SAM1 S-adenosylhomocys 98.8 1.8E-08 3.9E-13 104.5 8.4 102 188-293 205-308 (420)
76 PF07991 IlvN: Acetohydroxy ac 98.7 1.6E-08 3.5E-13 95.0 6.8 90 190-280 2-93 (165)
77 PTZ00142 6-phosphogluconate de 98.7 3.6E-08 7.8E-13 108.9 10.6 119 193-312 2-131 (470)
78 PRK11064 wecC UDP-N-acetyl-D-m 98.7 1.1E-07 2.4E-12 103.8 11.0 106 193-298 4-135 (415)
79 PRK07530 3-hydroxybutyryl-CoA 98.7 4.4E-07 9.5E-12 94.5 14.9 112 193-310 5-144 (292)
80 TIGR00873 gnd 6-phosphoglucona 98.6 1.1E-07 2.3E-12 105.2 10.5 117 195-312 2-128 (467)
81 cd04901 ACT_3PGDH C-terminal A 98.6 9.1E-08 2E-12 77.2 6.4 68 524-593 2-69 (69)
82 PRK14619 NAD(P)H-dependent gly 98.6 1E-07 2.3E-12 100.0 8.6 83 191-285 3-85 (308)
83 cd01075 NAD_bind_Leu_Phe_Val_D 98.6 2.7E-07 5.9E-12 91.0 10.5 108 187-301 23-133 (200)
84 PRK15182 Vi polysaccharide bio 98.6 2.8E-07 6.1E-12 100.9 11.7 141 193-339 7-179 (425)
85 PLN02688 pyrroline-5-carboxyla 98.6 6.8E-07 1.5E-11 91.6 13.9 102 193-298 1-109 (266)
86 PRK06129 3-hydroxyacyl-CoA deh 98.6 9.3E-07 2E-11 92.8 15.0 165 193-377 3-193 (308)
87 KOG1370 S-adenosylhomocysteine 98.6 1.5E-07 3.3E-12 95.5 8.1 103 189-298 211-314 (434)
88 PF03807 F420_oxidored: NADP o 98.6 1.1E-07 2.3E-12 82.0 6.1 88 194-284 1-96 (96)
89 PRK07819 3-hydroxybutyryl-CoA 98.6 1.3E-06 2.9E-11 90.8 15.1 142 193-356 6-175 (286)
90 PRK05808 3-hydroxybutyryl-CoA 98.5 1.8E-06 4E-11 89.3 14.7 103 193-298 4-132 (282)
91 TIGR00720 sda_mono L-serine de 98.5 4E-07 8.7E-12 98.5 9.8 132 400-555 41-194 (455)
92 PRK06130 3-hydroxybutyryl-CoA 98.5 2.9E-06 6.4E-11 89.0 15.4 109 193-304 5-136 (311)
93 PRK12491 pyrroline-5-carboxyla 98.5 7.3E-07 1.6E-11 92.1 10.5 102 193-298 3-111 (272)
94 cd04903 ACT_LSD C-terminal ACT 98.5 7.6E-07 1.6E-11 71.4 8.1 71 523-593 1-71 (71)
95 cd04879 ACT_3PGDH-like ACT_3PG 98.5 7.6E-07 1.7E-11 71.1 8.0 70 524-593 2-71 (71)
96 PRK06035 3-hydroxyacyl-CoA deh 98.5 3.8E-06 8.2E-11 87.4 15.4 115 193-312 4-148 (291)
97 PRK14194 bifunctional 5,10-met 98.4 4.7E-07 1E-11 94.0 8.3 80 187-285 154-234 (301)
98 PRK07531 bifunctional 3-hydrox 98.4 3E-06 6.5E-11 94.8 15.2 104 193-298 5-130 (495)
99 PRK08268 3-hydroxy-acyl-CoA de 98.4 2.9E-06 6.3E-11 95.0 15.0 115 193-313 8-150 (507)
100 TIGR03026 NDP-sugDHase nucleot 98.4 1.8E-06 3.9E-11 94.3 12.8 101 194-294 2-132 (411)
101 cd01065 NAD_bind_Shikimate_DH 98.4 1.5E-06 3.2E-11 81.4 10.4 107 189-300 16-132 (155)
102 TIGR00518 alaDH alanine dehydr 98.4 6.7E-07 1.5E-11 96.3 9.1 142 190-355 165-320 (370)
103 TIGR00561 pntA NAD(P) transhyd 98.4 1.3E-05 2.8E-10 89.1 19.0 185 93-283 64-285 (511)
104 PRK07679 pyrroline-5-carboxyla 98.4 2E-06 4.2E-11 89.1 11.4 103 192-298 3-113 (279)
105 PRK11861 bifunctional prephena 98.3 1.1E-07 2.5E-12 109.9 1.0 179 250-445 1-196 (673)
106 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.3 8E-06 1.7E-10 91.3 15.4 117 193-314 6-149 (503)
107 TIGR01724 hmd_rel H2-forming N 98.3 3.3E-06 7.2E-11 87.7 10.2 91 204-298 32-129 (341)
108 PRK06444 prephenate dehydrogen 98.3 5.3E-08 1.2E-12 95.6 -2.9 132 194-381 2-137 (197)
109 PRK13302 putative L-aspartate 98.3 2.7E-06 5.8E-11 87.8 9.3 105 192-301 6-117 (271)
110 PRK14189 bifunctional 5,10-met 98.3 2E-06 4.4E-11 88.7 8.1 82 186-286 152-234 (285)
111 PRK14618 NAD(P)H-dependent gly 98.3 4.1E-06 9E-11 88.6 10.5 100 193-298 5-123 (328)
112 PRK11880 pyrroline-5-carboxyla 98.2 2.6E-05 5.5E-10 80.0 15.6 105 193-303 3-114 (267)
113 PRK15057 UDP-glucose 6-dehydro 98.2 1E-05 2.2E-10 87.7 13.0 127 194-327 2-159 (388)
114 PRK00094 gpsA NAD(P)H-dependen 98.2 2.8E-06 6E-11 89.4 8.3 91 193-285 2-108 (325)
115 PRK14188 bifunctional 5,10-met 98.2 3.2E-06 6.9E-11 87.9 8.4 80 187-285 153-233 (296)
116 PF01842 ACT: ACT domain; Int 98.2 1.9E-06 4.1E-11 68.4 4.7 65 522-586 1-66 (66)
117 COG1023 Gnd Predicted 6-phosph 98.1 1.5E-05 3.4E-10 78.9 10.8 116 193-311 1-121 (300)
118 PRK14179 bifunctional 5,10-met 98.1 6E-06 1.3E-10 85.2 8.2 81 186-285 152-233 (284)
119 PRK06476 pyrroline-5-carboxyla 98.1 6.6E-06 1.4E-10 84.1 8.4 100 194-299 2-108 (258)
120 cd01080 NAD_bind_m-THF_DH_Cycl 98.1 1.2E-05 2.5E-10 77.2 8.8 90 188-303 40-130 (168)
121 PRK07680 late competence prote 98.1 8.1E-06 1.8E-10 84.2 8.1 100 194-297 2-109 (273)
122 PRK09424 pntA NAD(P) transhydr 98.1 4.1E-05 8.9E-10 85.3 14.0 187 93-283 65-286 (509)
123 COG0059 IlvC Ketol-acid reduct 98.1 9.2E-06 2E-10 83.2 7.5 87 189-276 15-103 (338)
124 TIGR01915 npdG NADPH-dependent 98.1 2.5E-05 5.4E-10 78.0 10.5 90 193-285 1-104 (219)
125 KOG2380 Prephenate dehydrogena 98.0 3.7E-05 8E-10 79.6 11.7 174 193-375 53-228 (480)
126 PRK08229 2-dehydropantoate 2-r 98.0 2.3E-05 4.9E-10 83.2 10.4 108 193-303 3-127 (341)
127 cd04878 ACT_AHAS N-terminal AC 98.0 1.5E-05 3.2E-10 63.9 6.4 69 522-590 1-71 (72)
128 PRK06928 pyrroline-5-carboxyla 98.0 3.7E-05 8.1E-10 79.6 10.7 107 193-303 2-117 (277)
129 PF10727 Rossmann-like: Rossma 98.0 1.2E-05 2.5E-10 73.6 5.4 106 192-301 10-121 (127)
130 COG2085 Predicted dinucleotide 97.9 3E-05 6.5E-10 76.2 8.4 88 193-283 2-94 (211)
131 PRK14175 bifunctional 5,10-met 97.9 2.7E-05 5.9E-10 80.5 8.2 80 187-285 153-233 (286)
132 PF01210 NAD_Gly3P_dh_N: NAD-d 97.9 3.1E-05 6.7E-10 73.3 7.5 106 194-301 1-127 (157)
133 PF03721 UDPG_MGDP_dh_N: UDP-g 97.9 4.4E-05 9.6E-10 74.4 8.6 134 193-327 1-170 (185)
134 COG0677 WecC UDP-N-acetyl-D-ma 97.9 0.00016 3.4E-09 76.9 13.1 140 193-340 10-188 (436)
135 cd05191 NAD_bind_amino_acid_DH 97.9 5.9E-05 1.3E-09 64.0 8.3 67 188-282 19-86 (86)
136 PRK09287 6-phosphogluconate de 97.9 4.2E-05 9E-10 84.5 9.2 110 203-313 1-120 (459)
137 PF02737 3HCDH_N: 3-hydroxyacy 97.9 5.2E-05 1.1E-09 73.5 8.7 127 194-331 1-154 (180)
138 PF01488 Shikimate_DH: Shikima 97.9 2.6E-05 5.6E-10 72.0 6.1 93 189-284 9-111 (135)
139 PRK12557 H(2)-dependent methyl 97.8 7.4E-05 1.6E-09 79.7 10.1 93 204-297 32-132 (342)
140 PRK05472 redox-sensing transcr 97.8 9.8E-06 2.1E-10 80.7 2.7 127 154-298 64-201 (213)
141 PF02882 THF_DHG_CYH_C: Tetrah 97.8 5.8E-05 1.2E-09 71.7 7.7 82 186-286 30-112 (160)
142 PRK13304 L-aspartate dehydroge 97.8 7.2E-05 1.6E-09 77.0 8.7 103 193-300 2-113 (265)
143 PRK07634 pyrroline-5-carboxyla 97.8 0.00011 2.3E-09 74.3 9.8 104 191-299 3-114 (245)
144 cd04874 ACT_Af1403 N-terminal 97.8 0.0001 2.2E-09 59.1 7.5 68 524-592 3-71 (72)
145 TIGR01035 hemA glutamyl-tRNA r 97.7 7.1E-05 1.5E-09 82.0 8.3 92 189-283 177-278 (417)
146 cd05213 NAD_bind_Glutamyl_tRNA 97.7 9.2E-05 2E-09 78.0 8.7 92 190-283 176-274 (311)
147 cd01079 NAD_bind_m-THF_DH NAD 97.7 0.00012 2.5E-09 71.4 8.6 98 179-283 49-157 (197)
148 COG0345 ProC Pyrroline-5-carbo 97.7 0.0002 4.4E-09 73.4 10.6 104 193-304 2-115 (266)
149 PRK12921 2-dehydropantoate 2-r 97.7 0.00016 3.4E-09 75.4 9.9 108 193-303 1-122 (305)
150 TIGR01546 GAPDH-II_archae glyc 97.7 0.00012 2.6E-09 77.4 9.0 85 195-282 1-108 (333)
151 PRK00045 hemA glutamyl-tRNA re 97.7 9.6E-05 2.1E-09 81.1 8.5 91 189-282 179-280 (423)
152 PF01262 AlaDh_PNT_C: Alanine 97.7 0.0001 2.2E-09 70.5 7.7 94 189-282 17-139 (168)
153 cd05212 NAD_bind_m-THF_DH_Cycl 97.7 0.00024 5.3E-09 66.1 9.7 81 186-285 22-103 (140)
154 cd04889 ACT_PDH-BS-like C-term 97.7 9.4E-05 2E-09 57.2 5.9 46 525-571 2-47 (56)
155 PRK06522 2-dehydropantoate 2-r 97.7 0.00033 7.1E-09 72.9 11.4 107 193-303 1-120 (304)
156 PTZ00431 pyrroline carboxylate 97.7 0.00017 3.7E-09 74.0 8.9 121 192-331 3-129 (260)
157 cd05311 NAD_bind_2_malic_enz N 97.6 0.00089 1.9E-08 67.4 13.8 130 187-333 20-168 (226)
158 PRK10792 bifunctional 5,10-met 97.6 0.00014 3.1E-09 75.1 8.2 79 187-284 154-233 (285)
159 PRK14191 bifunctional 5,10-met 97.6 0.00013 2.9E-09 75.4 7.9 81 186-285 151-232 (285)
160 PF13291 ACT_4: ACT domain; PD 97.6 0.00014 3.1E-09 60.6 6.6 68 524-591 9-79 (80)
161 PRK08577 hypothetical protein; 97.6 0.0006 1.3E-08 63.1 11.4 75 521-595 56-134 (136)
162 PLN00203 glutamyl-tRNA reducta 97.6 0.00012 2.5E-09 82.1 7.8 91 189-282 263-369 (519)
163 PRK14178 bifunctional 5,10-met 97.6 0.00013 2.9E-09 75.1 7.2 81 186-285 146-227 (279)
164 PRK14176 bifunctional 5,10-met 97.6 0.0002 4.4E-09 74.0 8.2 80 186-284 158-238 (287)
165 PLN02353 probable UDP-glucose 97.5 0.0019 4.1E-08 71.9 15.5 133 193-327 2-175 (473)
166 PRK14182 bifunctional 5,10-met 97.5 0.0011 2.3E-08 68.5 12.4 80 187-285 152-232 (282)
167 PRK14192 bifunctional 5,10-met 97.5 0.00031 6.7E-09 73.0 8.6 80 187-285 154-234 (283)
168 PRK14982 acyl-ACP reductase; P 97.5 0.00098 2.1E-08 70.8 12.3 98 186-289 149-253 (340)
169 PRK06349 homoserine dehydrogen 97.5 0.03 6.4E-07 61.7 24.3 67 522-589 349-418 (426)
170 PRK14183 bifunctional 5,10-met 97.5 0.00032 6.9E-09 72.4 8.2 81 186-285 151-232 (281)
171 PRK06249 2-dehydropantoate 2-r 97.5 0.0021 4.5E-08 67.7 14.7 109 193-305 6-128 (313)
172 PRK13562 acetolactate synthase 97.5 0.00051 1.1E-08 57.9 7.8 73 522-594 3-78 (84)
173 COG0190 FolD 5,10-methylene-te 97.5 0.0016 3.6E-08 66.7 12.9 82 186-286 150-232 (283)
174 cd04882 ACT_Bt0572_2 C-termina 97.4 0.00036 7.7E-09 55.2 6.3 59 524-584 2-60 (65)
175 PRK11152 ilvM acetolactate syn 97.4 0.00071 1.5E-08 56.2 8.1 71 522-592 4-75 (76)
176 cd04883 ACT_AcuB C-terminal AC 97.4 0.00041 8.9E-09 56.2 6.7 62 523-584 3-64 (72)
177 PRK11730 fadB multifunctional 97.4 0.0016 3.6E-08 76.1 14.0 172 193-387 314-513 (715)
178 PRK14190 bifunctional 5,10-met 97.4 0.00064 1.4E-08 70.4 8.9 82 186-286 152-234 (284)
179 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.4 0.00034 7.4E-09 56.9 5.7 69 523-591 2-73 (79)
180 COG1250 FadB 3-hydroxyacyl-CoA 97.4 0.0031 6.7E-08 66.1 14.0 173 192-387 3-203 (307)
181 PRK14170 bifunctional 5,10-met 97.4 0.00078 1.7E-08 69.6 9.4 81 186-285 151-232 (284)
182 PRK06737 acetolactate synthase 97.4 0.00069 1.5E-08 56.2 7.3 70 522-591 3-74 (76)
183 PF03720 UDPG_MGDP_dh_C: UDP-g 97.4 0.00069 1.5E-08 59.9 7.8 78 203-281 18-100 (106)
184 PRK08178 acetolactate synthase 97.4 0.00092 2E-08 57.7 8.1 75 519-593 6-81 (96)
185 TIGR02441 fa_ox_alpha_mit fatt 97.4 0.0017 3.7E-08 76.0 13.2 172 193-387 336-535 (737)
186 TIGR02371 ala_DH_arch alanine 97.4 0.00081 1.8E-08 71.3 9.6 87 192-284 128-224 (325)
187 cd04908 ACT_Bt0572_1 N-termina 97.3 0.00051 1.1E-08 55.1 6.2 58 523-584 3-60 (66)
188 PRK14186 bifunctional 5,10-met 97.3 0.00067 1.5E-08 70.6 8.4 82 186-286 152-234 (297)
189 PRK14173 bifunctional 5,10-met 97.3 0.00072 1.6E-08 70.0 8.5 82 186-286 149-231 (287)
190 cd04888 ACT_PheB-BS C-terminal 97.3 0.001 2.2E-08 54.4 7.9 70 523-593 2-75 (76)
191 TIGR02440 FadJ fatty oxidation 97.3 0.0021 4.6E-08 75.0 13.4 172 193-387 305-505 (699)
192 PRK14177 bifunctional 5,10-met 97.3 0.00076 1.7E-08 69.7 8.6 78 187-283 154-232 (284)
193 PRK14169 bifunctional 5,10-met 97.3 0.00075 1.6E-08 69.7 8.4 81 186-285 150-231 (282)
194 cd01076 NAD_bind_1_Glu_DH NAD( 97.3 0.00091 2E-08 67.3 8.7 106 188-301 27-153 (227)
195 TIGR02437 FadB fatty oxidation 97.3 0.0032 6.9E-08 73.6 14.3 172 193-387 314-513 (714)
196 PRK14172 bifunctional 5,10-met 97.3 0.00082 1.8E-08 69.3 8.4 79 187-284 153-232 (278)
197 PRK00258 aroE shikimate 5-dehy 97.3 0.00069 1.5E-08 70.2 7.8 70 188-257 119-196 (278)
198 PRK14166 bifunctional 5,10-met 97.3 0.00085 1.8E-08 69.3 8.3 79 186-283 151-230 (282)
199 PRK06141 ornithine cyclodeamin 97.3 0.0012 2.5E-08 69.8 9.4 84 191-281 124-217 (314)
200 cd01078 NAD_bind_H4MPT_DH NADP 97.3 0.0023 4.9E-08 62.5 10.8 97 187-287 23-134 (194)
201 PRK14187 bifunctional 5,10-met 97.2 0.00092 2E-08 69.4 8.3 81 186-285 154-235 (294)
202 PRK14180 bifunctional 5,10-met 97.2 0.00095 2.1E-08 69.0 8.2 79 186-283 152-231 (282)
203 PLN02516 methylenetetrahydrofo 97.2 0.0011 2.4E-08 69.0 8.3 81 186-285 161-242 (299)
204 PRK14171 bifunctional 5,10-met 97.2 0.0011 2.4E-08 68.6 8.1 78 187-283 154-232 (288)
205 PRK14193 bifunctional 5,10-met 97.2 0.0012 2.7E-08 68.2 8.4 111 186-337 152-265 (284)
206 PLN02616 tetrahydrofolate dehy 97.2 0.0012 2.5E-08 70.1 8.3 80 187-285 226-306 (364)
207 COG0686 Ald Alanine dehydrogen 97.2 0.00078 1.7E-08 69.5 6.6 92 190-282 166-268 (371)
208 cd04877 ACT_TyrR N-terminal AC 97.2 0.0014 3.1E-08 53.8 6.9 69 524-595 3-72 (74)
209 PRK14181 bifunctional 5,10-met 97.1 0.0014 3.1E-08 67.8 8.4 80 187-285 148-232 (287)
210 PRK07340 ornithine cyclodeamin 97.1 0.0013 2.9E-08 69.0 8.3 87 191-284 124-219 (304)
211 COG0373 HemA Glutamyl-tRNA red 97.1 0.0014 3.1E-08 71.0 8.5 91 189-282 175-274 (414)
212 PLN02897 tetrahydrofolate dehy 97.1 0.0014 3E-08 69.3 8.1 81 186-285 208-289 (345)
213 TIGR00119 acolac_sm acetolacta 97.1 0.0016 3.4E-08 61.7 7.5 71 522-592 2-74 (157)
214 PRK11895 ilvH acetolactate syn 97.1 0.0014 3.1E-08 62.3 7.2 72 522-593 3-76 (161)
215 COG0362 Gnd 6-phosphogluconate 97.1 0.011 2.5E-07 62.9 14.4 155 193-359 4-168 (473)
216 PRK00194 hypothetical protein; 97.1 0.00071 1.5E-08 57.7 4.4 66 521-588 3-72 (90)
217 cd05313 NAD_bind_2_Glu_DH NAD( 97.1 0.0074 1.6E-07 61.6 12.5 108 187-301 33-171 (254)
218 COG2150 Predicted regulator of 97.0 0.0016 3.4E-08 60.9 6.7 66 527-592 101-166 (167)
219 PF13710 ACT_5: ACT domain; PD 97.0 0.002 4.3E-08 51.6 6.5 61 530-590 1-63 (63)
220 TIGR01921 DAP-DH diaminopimela 97.0 0.002 4.3E-08 67.9 8.3 105 193-302 4-115 (324)
221 PRK11154 fadJ multifunctional 97.0 0.0091 2E-07 69.9 14.4 172 193-387 310-510 (708)
222 PRK14185 bifunctional 5,10-met 97.0 0.0023 4.9E-08 66.5 8.3 80 187-285 152-236 (293)
223 PF13241 NAD_binding_7: Putati 97.0 0.00068 1.5E-08 59.6 3.7 86 189-282 4-91 (103)
224 TIGR00507 aroE shikimate 5-deh 97.0 0.0035 7.7E-08 64.6 9.6 104 190-298 115-228 (270)
225 PRK13940 glutamyl-tRNA reducta 97.0 0.0025 5.3E-08 69.8 8.7 77 189-268 178-261 (414)
226 PRK12439 NAD(P)H-dependent gly 97.0 0.0017 3.8E-08 69.2 7.4 90 193-285 8-114 (341)
227 TIGR01763 MalateDH_bact malate 97.0 0.0032 7E-08 66.2 9.2 113 193-307 2-147 (305)
228 cd04887 ACT_MalLac-Enz ACT_Mal 96.9 0.0038 8.3E-08 50.8 7.6 67 524-591 2-71 (74)
229 PRK14168 bifunctional 5,10-met 96.9 0.0026 5.7E-08 66.2 8.2 81 186-285 155-240 (297)
230 PRK14174 bifunctional 5,10-met 96.9 0.0025 5.4E-08 66.4 8.0 80 187-285 154-238 (295)
231 TIGR03376 glycerol3P_DH glycer 96.9 0.003 6.4E-08 67.5 8.7 89 194-284 1-118 (342)
232 PRK14184 bifunctional 5,10-met 96.9 0.0023 5.1E-08 66.2 7.6 79 186-283 151-234 (286)
233 PRK14031 glutamate dehydrogena 96.9 0.0036 7.9E-08 68.7 9.4 107 187-299 223-359 (444)
234 PRK09414 glutamate dehydrogena 96.9 0.0034 7.4E-08 69.0 9.2 108 187-301 227-361 (445)
235 PRK06718 precorrin-2 dehydroge 96.9 0.0022 4.8E-08 63.4 6.8 71 188-258 6-82 (202)
236 PF01408 GFO_IDH_MocA: Oxidore 96.9 0.0026 5.6E-08 56.6 6.6 63 194-256 2-72 (120)
237 PRK14620 NAD(P)H-dependent gly 96.9 0.0031 6.6E-08 66.7 8.2 90 194-285 2-109 (326)
238 COG0240 GpsA Glycerol-3-phosph 96.9 0.0022 4.9E-08 67.3 7.0 93 193-287 2-110 (329)
239 TIGR02354 thiF_fam2 thiamine b 96.9 0.002 4.4E-08 63.6 6.3 91 189-280 18-143 (200)
240 PRK09310 aroDE bifunctional 3- 96.9 0.0024 5.3E-08 71.2 7.6 70 188-257 328-401 (477)
241 CHL00100 ilvH acetohydroxyacid 96.8 0.0022 4.7E-08 61.8 6.1 71 522-592 3-75 (174)
242 PRK14167 bifunctional 5,10-met 96.8 0.0039 8.4E-08 65.0 8.4 81 186-285 151-236 (297)
243 PTZ00345 glycerol-3-phosphate 96.8 0.0041 9E-08 66.9 8.9 91 193-285 12-132 (365)
244 TIGR02992 ectoine_eutC ectoine 96.8 0.005 1.1E-07 65.3 9.4 86 191-282 128-224 (326)
245 smart00859 Semialdhyde_dh Semi 96.8 0.0027 5.9E-08 57.2 6.2 88 194-283 1-100 (122)
246 PTZ00117 malate dehydrogenase; 96.8 0.006 1.3E-07 64.6 9.7 115 190-305 3-147 (319)
247 PLN02477 glutamate dehydrogena 96.8 0.027 5.8E-07 61.5 14.6 107 187-301 201-328 (410)
248 PRK08618 ornithine cyclodeamin 96.8 0.0055 1.2E-07 65.0 9.0 87 191-284 126-223 (325)
249 TIGR01470 cysG_Nterm siroheme 96.7 0.0036 7.9E-08 62.0 7.0 90 188-282 5-100 (205)
250 PRK13301 putative L-aspartate 96.7 0.0082 1.8E-07 61.5 9.2 101 193-298 3-112 (267)
251 cd05211 NAD_bind_Glu_Leu_Phe_V 96.7 0.012 2.7E-07 58.8 10.4 106 188-301 19-144 (217)
252 cd04876 ACT_RelA-SpoT ACT dom 96.7 0.0059 1.3E-07 47.2 6.5 66 525-591 2-70 (71)
253 PRK06046 alanine dehydrogenase 96.6 0.0071 1.5E-07 64.2 8.9 85 192-283 129-224 (326)
254 PF02558 ApbA: Ketopantoate re 96.6 0.003 6.5E-08 58.8 5.3 108 195-305 1-123 (151)
255 PRK14030 glutamate dehydrogena 96.6 0.032 6.9E-07 61.4 13.9 108 187-301 223-361 (445)
256 PRK04435 hypothetical protein; 96.6 0.0083 1.8E-07 56.3 8.1 75 519-594 67-145 (147)
257 cd04870 ACT_PSP_1 CT domains f 96.6 0.0058 1.3E-07 50.3 6.1 59 524-582 2-61 (75)
258 cd04869 ACT_GcvR_2 ACT domains 96.6 0.0064 1.4E-07 50.4 6.3 61 524-584 2-69 (81)
259 cd04875 ACT_F4HF-DF N-terminal 96.6 0.0055 1.2E-07 50.2 5.8 49 524-572 2-50 (74)
260 COG1064 AdhP Zn-dependent alco 96.5 0.0079 1.7E-07 63.7 8.3 44 192-235 167-211 (339)
261 cd04893 ACT_GcvR_1 ACT domains 96.5 0.0047 1E-07 51.3 5.3 46 523-570 3-48 (77)
262 PRK06823 ornithine cyclodeamin 96.5 0.0086 1.9E-07 63.3 8.5 86 192-283 128-223 (315)
263 COG1712 Predicted dinucleotide 96.5 0.0074 1.6E-07 59.9 7.3 92 194-290 2-99 (255)
264 PRK06719 precorrin-2 dehydroge 96.5 0.007 1.5E-07 57.4 7.0 69 187-256 8-80 (157)
265 cd04909 ACT_PDH-BS C-terminal 96.5 0.0079 1.7E-07 48.3 6.3 62 522-583 2-64 (69)
266 PRK00676 hemA glutamyl-tRNA re 96.5 0.01 2.2E-07 63.0 8.8 90 189-282 171-261 (338)
267 PRK06199 ornithine cyclodeamin 96.4 0.0093 2E-07 64.6 8.4 89 192-283 155-260 (379)
268 PF02423 OCD_Mu_crystall: Orni 96.4 0.0064 1.4E-07 64.2 6.8 90 193-286 129-228 (313)
269 COG0334 GdhA Glutamate dehydro 96.4 0.017 3.7E-07 62.3 9.9 108 187-301 202-330 (411)
270 PRK08291 ectoine utilization p 96.4 0.012 2.6E-07 62.5 8.8 86 191-282 131-227 (330)
271 cd04884 ACT_CBS C-terminal ACT 96.4 0.008 1.7E-07 48.9 5.7 61 524-584 2-66 (72)
272 PF00208 ELFV_dehydrog: Glutam 96.4 0.011 2.5E-07 60.1 8.0 106 189-301 29-164 (244)
273 cd04886 ACT_ThrD-II-like C-ter 96.4 0.0079 1.7E-07 47.9 5.6 59 525-583 2-66 (73)
274 COG2423 Predicted ornithine cy 96.4 0.013 2.9E-07 62.0 8.7 86 192-283 130-226 (330)
275 cd04926 ACT_ACR_4 C-terminal 96.3 0.013 2.9E-07 47.8 6.8 60 522-583 2-65 (72)
276 PRK06407 ornithine cyclodeamin 96.3 0.017 3.7E-07 60.7 9.2 86 192-283 117-213 (301)
277 PRK08269 3-hydroxybutyryl-CoA 96.3 0.061 1.3E-06 56.8 13.3 104 203-310 1-140 (314)
278 PF01118 Semialdhyde_dh: Semia 96.3 0.0054 1.2E-07 55.3 4.7 85 194-283 1-98 (121)
279 PRK01710 murD UDP-N-acetylmura 96.3 0.023 5.1E-07 63.0 10.6 108 190-298 12-141 (458)
280 PRK13303 L-aspartate dehydroge 96.2 0.018 3.9E-07 59.3 8.8 102 193-299 2-112 (265)
281 PF13740 ACT_6: ACT domain; PD 96.2 0.0052 1.1E-07 50.9 3.9 59 525-583 6-64 (76)
282 PRK12549 shikimate 5-dehydroge 96.2 0.016 3.4E-07 60.4 8.4 68 189-256 124-202 (284)
283 TIGR03026 NDP-sugDHase nucleot 96.2 0.022 4.8E-07 62.3 9.9 89 189-281 310-409 (411)
284 PRK00779 ornithine carbamoyltr 96.1 0.095 2.1E-06 55.2 13.7 98 135-253 116-224 (304)
285 PRK07589 ornithine cyclodeamin 96.1 0.021 4.6E-07 61.1 8.9 88 192-283 129-226 (346)
286 TIGR00670 asp_carb_tr aspartat 96.1 0.12 2.6E-06 54.3 14.0 64 189-252 147-222 (301)
287 PLN02353 probable UDP-glucose 96.0 0.034 7.3E-07 62.0 10.1 101 189-293 321-456 (473)
288 PRK01713 ornithine carbamoyltr 96.0 0.11 2.5E-06 55.2 13.6 94 189-282 153-275 (334)
289 TIGR02356 adenyl_thiF thiazole 96.0 0.016 3.5E-07 57.2 6.7 36 189-224 18-54 (202)
290 TIGR01850 argC N-acetyl-gamma- 96.0 0.015 3.3E-07 62.2 7.0 96 193-293 1-110 (346)
291 COG0569 TrkA K+ transport syst 95.9 0.013 2.8E-07 58.9 6.0 64 193-256 1-76 (225)
292 cd00650 LDH_MDH_like NAD-depen 95.9 0.02 4.3E-07 58.8 7.4 112 195-308 1-148 (263)
293 PF01113 DapB_N: Dihydrodipico 95.9 0.028 6E-07 51.1 7.5 100 194-298 2-114 (124)
294 cd04872 ACT_1ZPV ACT domain pr 95.9 0.0076 1.6E-07 51.2 3.5 49 522-572 2-50 (88)
295 COG1004 Ugd Predicted UDP-gluc 95.9 0.062 1.3E-06 57.8 11.0 141 193-338 1-175 (414)
296 PTZ00079 NADP-specific glutama 95.9 0.054 1.2E-06 59.6 10.7 108 187-301 232-370 (454)
297 cd05291 HicDH_like L-2-hydroxy 95.9 0.034 7.4E-07 58.4 8.9 90 193-282 1-117 (306)
298 PLN02527 aspartate carbamoyltr 95.8 0.19 4.2E-06 52.9 14.4 65 189-253 148-225 (306)
299 PRK03369 murD UDP-N-acetylmura 95.8 0.02 4.4E-07 64.1 7.4 109 190-298 10-141 (488)
300 PRK00683 murD UDP-N-acetylmura 95.8 0.018 3.8E-07 63.2 6.8 67 192-258 3-71 (418)
301 PF00185 OTCace: Aspartate/orn 95.8 0.096 2.1E-06 49.7 11.0 92 191-282 1-120 (158)
302 PRK06223 malate dehydrogenase; 95.8 0.05 1.1E-06 57.0 9.9 62 193-255 3-79 (307)
303 COG1748 LYS9 Saccharopine dehy 95.8 0.031 6.8E-07 60.4 8.4 88 193-285 2-102 (389)
304 TIGR00658 orni_carb_tr ornithi 95.8 0.19 4.1E-06 52.9 14.1 93 190-282 146-264 (304)
305 COG0026 PurK Phosphoribosylami 95.7 0.02 4.4E-07 60.8 6.6 61 192-252 1-68 (375)
306 PTZ00082 L-lactate dehydrogena 95.7 0.053 1.2E-06 57.5 9.8 64 190-254 4-82 (321)
307 PRK02255 putrescine carbamoylt 95.7 0.25 5.4E-06 52.8 14.7 64 189-252 151-228 (338)
308 PF02254 TrkA_N: TrkA-N domain 95.6 0.042 9E-07 48.6 7.3 84 195-280 1-94 (116)
309 PRK00856 pyrB aspartate carbam 95.6 0.13 2.9E-06 54.0 12.2 62 190-253 154-220 (305)
310 COG4747 ACT domain-containing 95.6 0.033 7.2E-07 49.6 6.3 106 438-572 14-119 (142)
311 PRK00048 dihydrodipicolinate r 95.6 0.046 9.9E-07 56.1 8.5 63 193-255 2-69 (257)
312 cd04905 ACT_CM-PDT C-terminal 95.6 0.043 9.4E-07 45.6 6.8 68 523-592 3-75 (80)
313 KOG0023 Alcohol dehydrogenase, 95.6 0.032 6.9E-07 58.2 7.1 46 191-236 181-228 (360)
314 COG5322 Predicted dehydrogenas 95.5 0.051 1.1E-06 55.3 8.0 113 162-290 148-269 (351)
315 cd04900 ACT_UUR-like_1 ACT dom 95.4 0.066 1.4E-06 43.7 7.3 61 522-583 2-67 (73)
316 KOG2304 3-hydroxyacyl-CoA dehy 95.4 0.0091 2E-07 59.2 2.4 132 191-332 10-173 (298)
317 PRK03515 ornithine carbamoyltr 95.4 0.16 3.5E-06 54.1 11.9 65 189-253 153-232 (336)
318 COG1707 ACT domain-containing 95.4 0.042 9E-07 51.8 6.4 69 524-592 5-74 (218)
319 PRK04207 glyceraldehyde-3-phos 95.3 0.043 9.4E-07 58.6 7.5 62 194-255 3-87 (341)
320 PRK15182 Vi polysaccharide bio 95.3 0.085 1.8E-06 58.1 9.9 95 187-286 309-416 (425)
321 PRK12475 thiamine/molybdopteri 95.3 0.042 9.1E-07 58.7 7.3 36 189-224 21-57 (338)
322 PRK11064 wecC UDP-N-acetyl-D-m 95.3 0.058 1.3E-06 59.2 8.6 88 187-280 315-414 (415)
323 PRK02102 ornithine carbamoyltr 95.3 0.19 4.1E-06 53.5 12.0 64 190-253 153-231 (331)
324 PRK09496 trkA potassium transp 95.3 0.035 7.5E-07 61.2 6.8 66 193-258 1-77 (453)
325 cd00757 ThiF_MoeB_HesA_family 95.2 0.024 5.2E-07 57.0 4.9 90 189-282 18-143 (228)
326 cd00762 NAD_bind_malic_enz NAD 95.2 0.46 9.9E-06 48.6 14.0 160 153-334 4-196 (254)
327 PF13380 CoA_binding_2: CoA bi 95.2 0.065 1.4E-06 48.1 7.1 99 193-302 1-104 (116)
328 PRK11891 aspartate carbamoyltr 95.2 0.29 6.2E-06 53.8 13.3 66 189-254 238-316 (429)
329 KOG2653 6-phosphogluconate deh 95.2 0.3 6.6E-06 51.6 12.7 148 194-353 8-165 (487)
330 cd05312 NAD_bind_1_malic_enz N 95.2 0.74 1.6E-05 47.7 15.6 184 153-358 4-224 (279)
331 COG1648 CysG Siroheme synthase 95.2 0.047 1E-06 54.3 6.7 90 187-282 7-103 (210)
332 cd04899 ACT_ACR-UUR-like_2 C-t 95.2 0.067 1.5E-06 42.8 6.5 59 523-583 2-64 (70)
333 PRK14106 murD UDP-N-acetylmura 95.2 0.13 2.9E-06 56.6 11.0 110 189-298 2-132 (450)
334 TIGR00655 PurU formyltetrahydr 95.2 0.028 6E-07 58.4 5.2 50 523-572 2-51 (280)
335 cd04873 ACT_UUR-ACR-like ACT d 95.1 0.072 1.6E-06 42.3 6.6 59 523-583 2-64 (70)
336 PRK03659 glutathione-regulated 95.1 0.049 1.1E-06 62.6 7.7 90 192-283 400-499 (601)
337 COG1004 Ugd Predicted UDP-gluc 95.1 0.065 1.4E-06 57.6 7.9 87 190-280 308-406 (414)
338 TIGR01809 Shik-DH-AROM shikima 95.1 0.042 9.1E-07 57.2 6.4 69 189-257 122-201 (282)
339 PRK10669 putative cation:proto 95.1 0.039 8.5E-07 62.8 6.7 85 193-279 418-512 (558)
340 PRK13814 pyrB aspartate carbam 95.1 0.2 4.3E-06 52.9 11.4 63 190-252 155-223 (310)
341 TIGR03316 ygeW probable carbam 95.1 0.43 9.3E-06 51.3 14.1 64 190-253 168-252 (357)
342 PRK13010 purU formyltetrahydro 95.1 0.04 8.6E-07 57.5 6.0 49 522-570 10-58 (289)
343 cd05292 LDH_2 A subgroup of L- 95.1 0.042 9.1E-07 57.8 6.3 64 193-257 1-78 (308)
344 PRK01390 murD UDP-N-acetylmura 95.1 0.11 2.3E-06 57.7 9.9 109 190-298 7-138 (460)
345 PRK04284 ornithine carbamoyltr 95.0 0.23 5E-06 52.9 11.9 94 189-282 152-274 (332)
346 cd04925 ACT_ACR_2 ACT domain-c 95.0 0.086 1.9E-06 43.3 6.8 58 524-583 3-66 (74)
347 PLN02342 ornithine carbamoyltr 95.0 0.4 8.7E-06 51.3 13.6 129 133-282 156-307 (348)
348 PRK00066 ldh L-lactate dehydro 94.9 0.055 1.2E-06 57.2 6.8 65 191-255 5-82 (315)
349 PRK06270 homoserine dehydrogen 94.9 0.082 1.8E-06 56.5 8.2 108 194-301 4-145 (341)
350 PRK08306 dipicolinate synthase 94.9 0.13 2.8E-06 54.0 9.3 87 191-279 1-98 (296)
351 PRK07232 bifunctional malic en 94.9 1.3 2.8E-05 52.1 18.3 178 137-351 151-352 (752)
352 COG0771 MurD UDP-N-acetylmuram 94.9 0.048 1.1E-06 60.0 6.4 122 190-312 5-156 (448)
353 PRK02472 murD UDP-N-acetylmura 94.9 0.22 4.8E-06 54.8 11.7 110 189-298 2-132 (447)
354 cd02116 ACT ACT domains are co 94.9 0.071 1.5E-06 38.8 5.4 57 525-581 2-59 (60)
355 PRK02006 murD UDP-N-acetylmura 94.8 0.058 1.2E-06 60.6 7.0 64 190-253 5-76 (498)
356 PRK05708 2-dehydropantoate 2-r 94.8 0.12 2.6E-06 54.3 9.0 111 193-306 3-127 (305)
357 TIGR02964 xanthine_xdhC xanthi 94.8 0.16 3.4E-06 51.8 9.5 85 193-298 101-185 (246)
358 cd01339 LDH-like_MDH L-lactate 94.8 0.053 1.2E-06 56.7 6.3 60 195-255 1-75 (300)
359 PRK00421 murC UDP-N-acetylmura 94.8 0.065 1.4E-06 59.5 7.3 110 190-299 5-132 (461)
360 PRK08300 acetaldehyde dehydrog 94.8 0.11 2.3E-06 54.5 8.3 85 193-282 5-101 (302)
361 PRK00141 murD UDP-N-acetylmura 94.8 0.066 1.4E-06 59.8 7.2 110 189-298 12-145 (473)
362 PRK00436 argC N-acetyl-gamma-g 94.7 0.067 1.5E-06 57.2 6.8 92 193-289 3-106 (343)
363 PLN02520 bifunctional 3-dehydr 94.7 0.12 2.6E-06 58.5 9.1 39 187-225 374-412 (529)
364 cd00300 LDH_like L-lactate deh 94.7 0.12 2.7E-06 54.1 8.6 87 195-282 1-115 (300)
365 PRK11579 putative oxidoreducta 94.7 0.079 1.7E-06 56.5 7.3 62 194-256 6-74 (346)
366 PRK14804 ornithine carbamoyltr 94.7 0.56 1.2E-05 49.5 13.5 65 189-253 150-225 (311)
367 cd04880 ACT_AAAH-PDT-like ACT 94.6 0.085 1.8E-06 43.2 5.8 60 524-584 2-67 (75)
368 PRK06019 phosphoribosylaminoim 94.5 0.069 1.5E-06 57.7 6.5 61 192-252 2-69 (372)
369 PRK12562 ornithine carbamoyltr 94.5 0.62 1.4E-05 49.7 13.5 94 189-282 153-275 (334)
370 PRK12548 shikimate 5-dehydroge 94.5 0.12 2.6E-06 53.9 8.0 37 189-225 123-160 (289)
371 PF00056 Ldh_1_N: lactate/mala 94.5 0.053 1.1E-06 50.4 4.8 63 193-255 1-78 (141)
372 TIGR03215 ac_ald_DH_ac acetald 94.5 0.16 3.5E-06 52.8 8.8 84 194-282 3-95 (285)
373 COG0281 SfcA Malic enzyme [Ene 94.5 1.6 3.4E-05 47.5 16.2 183 137-356 165-370 (432)
374 PRK07688 thiamine/molybdopteri 94.4 0.096 2.1E-06 56.0 7.1 36 189-224 21-57 (339)
375 cd05293 LDH_1 A subgroup of L- 94.4 0.18 3.9E-06 53.2 9.0 109 193-304 4-144 (312)
376 PLN02968 Probable N-acetyl-gam 94.3 0.077 1.7E-06 57.6 6.3 98 191-294 37-146 (381)
377 PRK09880 L-idonate 5-dehydroge 94.3 0.19 4E-06 53.3 9.2 46 191-236 169-216 (343)
378 PRK11589 gcvR glycine cleavage 94.3 0.045 9.8E-07 53.6 4.1 45 522-566 96-142 (190)
379 PRK13376 pyrB bifunctional asp 94.3 0.98 2.1E-05 50.9 14.9 61 189-249 171-244 (525)
380 PF13478 XdhC_C: XdhC Rossmann 94.3 0.066 1.4E-06 49.6 4.8 80 195-299 1-80 (136)
381 PF02629 CoA_binding: CoA bind 94.2 0.035 7.7E-07 48.0 2.8 73 193-266 4-81 (96)
382 PRK05690 molybdopterin biosynt 94.2 0.09 2E-06 53.5 6.1 36 189-224 29-65 (245)
383 cd05297 GH4_alpha_glucosidase_ 94.2 0.17 3.6E-06 55.8 8.5 63 194-256 2-84 (423)
384 PRK01438 murD UDP-N-acetylmura 94.1 0.11 2.3E-06 58.0 7.1 112 187-298 11-146 (480)
385 TIGR01761 thiaz-red thiazoliny 94.1 0.31 6.8E-06 52.1 10.2 106 193-301 4-116 (343)
386 TIGR00036 dapB dihydrodipicoli 94.1 0.17 3.6E-06 52.3 7.9 62 194-255 3-77 (266)
387 PRK04523 N-acetylornithine car 94.1 1.1 2.5E-05 47.7 14.4 65 190-254 166-252 (335)
388 cd04896 ACT_ACR-like_3 ACT dom 94.0 0.19 4.1E-06 41.7 6.6 60 524-583 3-66 (75)
389 cd08230 glucose_DH Glucose deh 94.0 0.17 3.6E-06 53.9 8.0 46 191-236 172-221 (355)
390 KOG0022 Alcohol dehydrogenase, 93.9 0.33 7.2E-06 50.7 9.5 46 191-236 192-239 (375)
391 PRK08644 thiamine biosynthesis 93.9 0.22 4.7E-06 49.6 8.1 36 189-224 25-61 (212)
392 PRK05600 thiamine biosynthesis 93.9 0.018 4E-07 62.1 0.4 53 170-224 21-74 (370)
393 PRK06027 purU formyltetrahydro 93.9 0.072 1.6E-06 55.6 4.8 51 521-571 6-56 (286)
394 PRK03562 glutathione-regulated 93.9 0.14 3E-06 59.2 7.5 89 192-282 400-498 (621)
395 cd01486 Apg7 Apg7 is an E1-lik 93.9 0.11 2.5E-06 54.2 6.1 85 194-282 1-140 (307)
396 COG0673 MviM Predicted dehydro 93.8 0.15 3.2E-06 53.7 7.2 64 193-256 4-77 (342)
397 PRK12749 quinate/shikimate deh 93.8 0.14 3E-06 53.5 6.6 37 189-225 121-158 (288)
398 PRK08762 molybdopterin biosynt 93.8 0.19 4E-06 54.5 7.9 75 133-224 93-168 (376)
399 PRK13011 formyltetrahydrofolat 93.7 0.14 3E-06 53.4 6.6 49 522-570 8-56 (286)
400 TIGR01381 E1_like_apg7 E1-like 93.7 0.15 3.3E-06 58.2 7.3 127 139-282 296-480 (664)
401 PLN02819 lysine-ketoglutarate 93.7 0.23 5.1E-06 60.1 9.2 66 191-256 568-658 (1042)
402 PRK12862 malic enzyme; Reviewe 93.7 2.2 4.7E-05 50.5 16.9 174 138-350 160-359 (763)
403 PRK10637 cysG siroheme synthas 93.7 0.15 3.3E-06 56.6 7.2 90 188-282 8-103 (457)
404 TIGR02355 moeB molybdopterin s 93.7 0.087 1.9E-06 53.5 4.8 36 189-224 21-57 (240)
405 cd04895 ACT_ACR_1 ACT domain-c 93.6 0.27 5.9E-06 40.4 6.6 59 523-583 3-66 (72)
406 PRK04148 hypothetical protein; 93.5 0.17 3.6E-06 46.8 6.0 64 191-255 16-86 (134)
407 cd04928 ACT_TyrKc Uncharacteri 93.5 0.28 6.1E-06 39.9 6.6 49 522-571 2-50 (68)
408 TIGR01087 murD UDP-N-acetylmur 93.5 0.34 7.3E-06 53.3 9.5 105 194-299 1-127 (433)
409 PRK03803 murD UDP-N-acetylmura 93.4 0.17 3.7E-06 55.9 7.1 107 192-298 6-132 (448)
410 PRK04308 murD UDP-N-acetylmura 93.4 0.18 3.9E-06 55.7 7.2 109 190-298 3-134 (445)
411 PRK04690 murD UDP-N-acetylmura 93.4 0.15 3.3E-06 56.8 6.6 108 190-298 6-139 (468)
412 PF03447 NAD_binding_3: Homose 93.4 0.097 2.1E-06 46.7 4.1 96 199-299 1-110 (117)
413 TIGR01851 argC_other N-acetyl- 93.3 0.23 4.9E-06 52.3 7.3 76 194-282 3-80 (310)
414 COG3288 PntA NAD/NADP transhyd 93.3 0.16 3.4E-06 52.8 6.0 95 187-282 159-281 (356)
415 PRK10872 relA (p)ppGpp synthet 93.3 0.2 4.3E-06 58.6 7.5 70 523-592 668-740 (743)
416 PRK08192 aspartate carbamoyltr 93.3 1.4 3E-05 47.1 13.4 65 189-253 156-233 (338)
417 PF13460 NAD_binding_10: NADH( 93.3 0.15 3.2E-06 48.5 5.5 63 195-258 1-72 (183)
418 COG0788 PurU Formyltetrahydrof 93.2 0.13 2.8E-06 52.3 5.1 55 520-574 6-60 (287)
419 PRK05562 precorrin-2 dehydroge 93.2 0.23 5E-06 49.9 6.8 90 187-281 20-115 (223)
420 cd04927 ACT_ACR-like_2 Second 93.1 0.37 8E-06 39.9 6.9 58 524-582 3-64 (76)
421 PRK07200 aspartate/ornithine c 93.1 1.6 3.5E-05 47.6 13.6 65 189-253 184-269 (395)
422 COG0440 IlvH Acetolactate synt 93.0 0.3 6.4E-06 46.4 6.9 71 520-590 3-75 (163)
423 PRK12861 malic enzyme; Reviewe 93.0 2.4 5.1E-05 50.0 15.7 120 139-286 157-292 (764)
424 COG0169 AroE Shikimate 5-dehyd 93.0 0.3 6.5E-06 50.8 7.7 95 188-285 122-229 (283)
425 cd01492 Aos1_SUMO Ubiquitin ac 93.0 0.18 4E-06 49.6 5.8 38 188-225 17-55 (197)
426 PRK05086 malate dehydrogenase; 93.0 0.47 1E-05 50.1 9.2 64 193-256 1-79 (312)
427 PLN02948 phosphoribosylaminoim 92.9 0.25 5.4E-06 56.6 7.5 69 189-257 19-94 (577)
428 PRK08223 hypothetical protein; 92.9 0.18 3.8E-06 52.6 5.7 36 189-224 24-60 (287)
429 PRK03806 murD UDP-N-acetylmura 92.9 0.36 7.9E-06 53.1 8.6 108 190-298 4-129 (438)
430 PRK07877 hypothetical protein; 92.8 0.15 3.2E-06 59.6 5.6 96 189-288 104-235 (722)
431 PRK09496 trkA potassium transp 92.8 0.29 6.3E-06 53.9 7.7 68 190-257 229-308 (453)
432 COG1893 ApbA Ketopantoate redu 92.8 0.24 5.2E-06 52.2 6.7 140 193-336 1-154 (307)
433 COG3830 ACT domain-containing 92.8 0.077 1.7E-06 45.2 2.3 32 524-555 6-37 (90)
434 PF03435 Saccharop_dh: Sacchar 92.6 0.19 4E-06 54.5 5.7 63 195-257 1-78 (386)
435 TIGR02822 adh_fam_2 zinc-bindi 92.5 0.39 8.5E-06 50.7 8.0 87 191-282 165-254 (329)
436 TIGR03366 HpnZ_proposed putati 92.5 0.34 7.3E-06 49.8 7.2 45 191-235 120-166 (280)
437 PRK01368 murD UDP-N-acetylmura 92.4 0.33 7.2E-06 53.9 7.5 107 191-298 5-128 (454)
438 PRK05597 molybdopterin biosynt 92.3 0.33 7.2E-06 52.2 7.1 36 189-224 25-61 (355)
439 PRK03815 murD UDP-N-acetylmura 92.3 0.72 1.6E-05 50.4 9.9 102 194-298 2-113 (401)
440 PRK10206 putative oxidoreducta 92.3 0.3 6.5E-06 52.2 6.8 63 194-256 3-74 (344)
441 COG1063 Tdh Threonine dehydrog 92.3 0.54 1.2E-05 50.4 8.7 85 193-282 170-269 (350)
442 COG0077 PheA Prephenate dehydr 92.3 0.52 1.1E-05 48.8 8.1 111 441-586 148-264 (279)
443 PRK11589 gcvR glycine cleavage 92.3 0.19 4.2E-06 49.2 4.8 45 525-569 12-56 (190)
444 cd05188 MDR Medium chain reduc 92.3 1.2 2.5E-05 44.4 10.6 35 191-225 134-168 (271)
445 PTZ00325 malate dehydrogenase; 92.2 0.29 6.3E-06 51.9 6.4 68 189-256 5-86 (321)
446 COG4007 Predicted dehydrogenas 92.1 0.54 1.2E-05 47.8 7.6 83 204-287 33-122 (340)
447 KOG2741 Dimeric dihydrodiol de 92.1 0.79 1.7E-05 48.6 9.2 104 194-301 8-124 (351)
448 cd01487 E1_ThiF_like E1_ThiF_l 92.1 0.52 1.1E-05 45.4 7.4 32 194-225 1-33 (174)
449 PF05368 NmrA: NmrA-like famil 92.0 0.28 6.1E-06 48.8 5.8 63 195-257 1-75 (233)
450 cd05294 LDH-like_MDH_nadp A la 92.0 0.4 8.7E-06 50.5 7.1 63 193-256 1-82 (309)
451 TIGR01161 purK phosphoribosyla 92.0 0.34 7.4E-06 51.7 6.7 60 194-253 1-67 (352)
452 PLN02602 lactate dehydrogenase 91.9 0.41 8.9E-06 51.4 7.1 62 193-255 38-114 (350)
453 cd01483 E1_enzyme_family Super 91.9 1.5 3.3E-05 40.3 10.2 32 194-225 1-33 (143)
454 PRK14027 quinate/shikimate deh 91.9 0.79 1.7E-05 47.7 9.1 68 189-256 124-204 (283)
455 PRK06392 homoserine dehydrogen 91.8 0.86 1.9E-05 48.5 9.3 105 194-299 2-134 (326)
456 PRK11899 prephenate dehydratas 91.7 0.84 1.8E-05 47.4 8.9 111 442-585 148-263 (279)
457 CHL00194 ycf39 Ycf39; Provisio 91.6 0.41 8.8E-06 50.2 6.7 63 193-255 1-73 (317)
458 PRK07411 hypothetical protein; 91.6 0.23 4.9E-06 54.2 4.9 36 189-224 35-71 (390)
459 PRK11092 bifunctional (p)ppGpp 91.5 0.44 9.6E-06 55.7 7.4 69 524-593 629-700 (702)
460 PLN02586 probable cinnamyl alc 91.5 0.62 1.3E-05 49.9 8.1 45 191-235 183-229 (360)
461 cd04904 ACT_AAAH ACT domain of 91.5 0.53 1.1E-05 38.6 5.9 61 523-583 2-65 (74)
462 TIGR02717 AcCoA-syn-alpha acet 91.5 1 2.3E-05 49.9 10.0 106 190-302 5-123 (447)
463 TIGR01532 E4PD_g-proteo D-eryt 91.4 0.54 1.2E-05 50.0 7.4 30 194-223 1-34 (325)
464 PRK06382 threonine dehydratase 91.0 0.34 7.3E-06 53.1 5.6 68 517-584 326-399 (406)
465 PLN02383 aspartate semialdehyd 90.9 0.35 7.5E-06 51.8 5.3 85 191-282 6-100 (344)
466 COG4492 PheB ACT domain-contai 90.8 0.75 1.6E-05 42.0 6.5 72 522-594 73-148 (150)
467 TIGR03201 dearomat_had 6-hydro 90.8 0.62 1.3E-05 49.5 7.2 45 191-235 166-211 (349)
468 cd08237 ribitol-5-phosphate_DH 90.7 1.1 2.3E-05 47.6 8.9 35 191-225 163-199 (341)
469 cd01336 MDH_cytoplasmic_cytoso 90.7 0.43 9.4E-06 50.7 5.8 63 194-256 4-88 (325)
470 PRK15057 UDP-glucose 6-dehydro 90.6 0.61 1.3E-05 50.8 7.1 63 190-254 294-367 (388)
471 PRK14805 ornithine carbamoyltr 90.6 4.2 9.1E-05 42.8 13.0 65 189-254 144-222 (302)
472 PRK12769 putative oxidoreducta 90.6 0.71 1.5E-05 53.7 8.0 35 190-224 325-359 (654)
473 cd04906 ACT_ThrD-I_1 First of 90.5 0.65 1.4E-05 39.2 5.7 59 523-583 3-64 (85)
474 PLN02272 glyceraldehyde-3-phos 90.5 0.4 8.7E-06 52.4 5.4 35 193-227 86-122 (421)
475 PLN00106 malate dehydrogenase 90.4 0.55 1.2E-05 49.9 6.3 65 191-255 17-95 (323)
476 PRK07878 molybdopterin biosynt 90.4 0.34 7.5E-06 52.8 4.9 36 189-224 39-75 (392)
477 PF00899 ThiF: ThiF family; I 90.3 0.29 6.2E-06 44.8 3.6 35 191-225 1-36 (135)
478 TIGR02853 spore_dpaA dipicolin 90.2 1.3 2.7E-05 46.3 8.7 103 192-301 1-114 (287)
479 cd05283 CAD1 Cinnamyl alcohol 90.2 1.3 2.7E-05 46.7 8.9 45 191-235 169-214 (337)
480 cd08239 THR_DH_like L-threonin 90.2 0.92 2E-05 47.7 7.8 45 191-235 163-209 (339)
481 PRK14573 bifunctional D-alanyl 90.2 1.7 3.8E-05 51.8 10.9 107 193-299 5-129 (809)
482 cd01338 MDH_choloroplast_like 90.1 0.39 8.5E-06 50.9 4.9 64 193-256 3-88 (322)
483 PRK13529 malate dehydrogenase; 90.1 12 0.00027 42.4 16.8 213 119-356 242-499 (563)
484 cd04897 ACT_ACR_3 ACT domain-c 90.1 1.2 2.6E-05 37.0 6.7 59 523-583 3-66 (75)
485 PRK04663 murD UDP-N-acetylmura 90.1 2 4.4E-05 47.3 10.8 109 190-298 4-132 (438)
486 PRK02705 murD UDP-N-acetylmura 90.0 1.9 4E-05 47.8 10.4 105 194-298 2-133 (459)
487 PLN02178 cinnamyl-alcohol dehy 90.0 0.87 1.9E-05 49.2 7.6 45 191-235 178-224 (375)
488 PRK12809 putative oxidoreducta 90.0 0.83 1.8E-05 53.0 7.8 36 190-225 308-343 (639)
489 cd05290 LDH_3 A subgroup of L- 90.0 0.57 1.2E-05 49.4 5.9 63 194-256 1-78 (307)
490 PF04016 DUF364: Domain of unk 89.9 0.3 6.5E-06 45.8 3.4 84 190-282 9-95 (147)
491 PRK11863 N-acetyl-gamma-glutam 89.9 0.65 1.4E-05 49.1 6.3 77 193-282 3-81 (313)
492 TIGR01202 bchC 2-desacetyl-2-h 89.9 1.1 2.5E-05 46.7 8.2 35 191-225 144-179 (308)
493 cd04929 ACT_TPH ACT domain of 89.8 0.9 1.9E-05 37.5 5.8 61 523-583 2-65 (74)
494 cd08281 liver_ADH_like1 Zinc-d 89.8 0.89 1.9E-05 48.7 7.4 45 191-235 191-237 (371)
495 COG2716 GcvR Glycine cleavage 89.6 0.4 8.6E-06 45.7 3.9 38 519-556 90-127 (176)
496 TIGR00691 spoT_relA (p)ppGpp s 89.6 0.82 1.8E-05 53.4 7.4 68 523-591 612-682 (683)
497 cd04885 ACT_ThrD-I Tandem C-te 89.6 0.78 1.7E-05 36.8 5.2 58 525-583 2-61 (68)
498 COG2344 AT-rich DNA-binding pr 89.5 0.48 1E-05 46.1 4.4 63 194-256 86-156 (211)
499 TIGR01082 murC UDP-N-acetylmur 89.4 0.75 1.6E-05 50.9 6.7 104 195-298 2-123 (448)
500 COG0677 WecC UDP-N-acetyl-D-ma 89.4 1.5 3.1E-05 47.5 8.4 91 187-281 317-419 (436)
No 1
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=7.3e-112 Score=940.85 Aligned_cols=522 Identities=47% Similarity=0.723 Sum_probs=490.9
Q ss_pred eEEEecCCChhHHHHhhcC-CcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChh
Q 046427 55 TVLVAEKLGEAGLDVLKNF-ANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLS 133 (595)
Q Consensus 55 ~il~~~~~~~~~~~~l~~~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~ 133 (595)
|||+++++.+...+.|++. .++......+++++.+.++++|++++++.+++++++++++ |+||||+++|+|+||||++
T Consensus 1 ~vli~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~ 79 (525)
T TIGR01327 1 KVLIADPISPDGIDILEDVGVEVDVQTGLSREELLEIIPDYDALIVRSATKVTEEVIAAA-PKLKVIGRAGVGVDNIDIE 79 (525)
T ss_pred CEEEeCCCCHHHHHHHHhcCcEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhC-CCceEEEECCcccchhcHH
Confidence 5889999999988888765 3666544567889999999999999988889999999987 6999999999999999999
Q ss_pred hHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhc
Q 046427 134 AATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKG 213 (595)
Q Consensus 134 aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~ 213 (595)
+|+++||.|+|+||+|+.+||||+++|||+++|+++.+++.+++|+|.+..+.|.+|+||||||||+|+||+.+|+++++
T Consensus 80 ~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~ 159 (525)
T TIGR01327 80 AATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKA 159 (525)
T ss_pred HHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999876667899999999999999999999999999
Q ss_pred CCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHH
Q 046427 214 LGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEAL 292 (595)
Q Consensus 214 ~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL 292 (595)
|||+|++|||+.+.+.+.+.|+..+ ++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++||
T Consensus 160 fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL 239 (525)
T TIGR01327 160 FGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAAL 239 (525)
T ss_pred CCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHH
Confidence 9999999999865555667787765 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChh
Q 046427 293 VRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAE 372 (595)
Q Consensus 293 ~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~ 372 (595)
++||++|+|+||+||||++||+ .++|||++|||++|||+|++|.|++.+++..+++|+.+|++|+.+.+.||.|.++.+
T Consensus 240 ~~aL~~g~i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~~ 318 (525)
T TIGR01327 240 YEALEEGHVRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPGIDAD 318 (525)
T ss_pred HHHHHcCCeeEEEEecCCCCCC-CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeCCCCCch
Confidence 9999999999999999999996 589999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhhCC
Q 046427 373 VISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRG 452 (595)
Q Consensus 373 ~~~~~~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~G 452 (595)
..+.++||+.||+|||++++||+++ .|++++|+|+|||+ .+++|++++|+++|+|+...++|+|++||+.+|+|+|
T Consensus 319 ~~~~~~~~~~la~riG~~a~ql~~~--~~~~v~i~~~GsfA--~~~~~~~~~a~l~GlL~~~~~~d~~~~nA~~iA~e~G 394 (525)
T TIGR01327 319 VMEKLKPYLDLAEKLGKLAGQLLDG--AVQSVEVTYRGELA--TENSEPLTRAALKGLLSPVLDDEVNMVNAPAVAKERG 394 (525)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHcCC--CceEEEEEEEcchh--cccccHHHHHHHHHhCccccCCCccccCHHHHHHHcC
Confidence 9999999999999999999999998 89999999999998 4699999999999999887776999999999999999
Q ss_pred ceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEE-EEeCCeeEEEEEcceEEEeecCccEEEEEecCC
Q 046427 453 LRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEG-RVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQ 531 (595)
Q Consensus 453 I~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~G-SvgGG~i~I~~Idgf~v~~~~~~~~Liv~~~D~ 531 (595)
|+|.|.+.+....|||++.+...+ +++++++.| |+|||++||++||||+|++.|++|+|++.|.|+
T Consensus 395 I~v~~~~~~~~~~hpNtv~i~l~~-------------~~~~~~v~G~s~gGg~~~I~~ing~~v~~~~~~~~li~~~~D~ 461 (525)
T TIGR01327 395 ITVEESKSESSPDYKNYLSVTVTG-------------DSGTVSVAGTVFGGFSPRIVEIDGFHVDLEPEGIMLIILHLDK 461 (525)
T ss_pred CEEEEEEccCCCCCCCEEEEEEEe-------------CCcEEEEEEEEecCCcEEEEEECCEEEEEecCccEEEEEecCc
Confidence 999999888778899998776543 456889999 566789999999999999999999999999999
Q ss_pred CCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEEeC
Q 046427 532 PGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFLKL 595 (595)
Q Consensus 532 pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i~~ 595 (595)
||+|++|+++|++++|||++|+++|..+|++|+|++++|++++++++++|+++++|.++++++|
T Consensus 462 pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~v~~i~~ 525 (525)
T TIGR01327 462 PGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVPDEVLEEIKAIPDILSVFVVDL 525 (525)
T ss_pred CCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCCCCHHHHHHHhcCCCccEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 2
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1e-110 Score=931.92 Aligned_cols=523 Identities=49% Similarity=0.750 Sum_probs=490.8
Q ss_pred CeEEEecCCChhHHHHhhcC--CcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccC
Q 046427 54 PTVLVAEKLGEAGLDVLKNF--ANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVD 131 (595)
Q Consensus 54 ~~il~~~~~~~~~~~~l~~~--~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD 131 (595)
+||++++.+.+...+.|++. .++......+++|+.+.++++|++++++.+++++++++++ |+||||+++|+|+||||
T Consensus 1 m~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id 79 (526)
T PRK13581 1 MKVLVSDPISPAGLEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAA-KNLKVIGRAGVGVDNVD 79 (526)
T ss_pred CeEEEeCCCCHHHHHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhC-CCCeEEEECCccccccc
Confidence 37899999998888888875 3454444557889999999999999988789999999987 69999999999999999
Q ss_pred hhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHH
Q 046427 132 LSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRA 211 (595)
Q Consensus 132 ~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l 211 (595)
+++|+++||.|+|+|++|+.+||||++++||+++|+++.+++.+++|+|.+..+.|.+|+||||||||+|+||+.+|+++
T Consensus 80 ~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l 159 (526)
T PRK13581 80 VPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRA 159 (526)
T ss_pred HHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998766678899999999999999999999999
Q ss_pred hcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHH
Q 046427 212 KGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEA 291 (595)
Q Consensus 212 ~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~a 291 (595)
++|||+|++|||+.+.+.+...|++.+++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|++|
T Consensus 160 ~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~a 239 (526)
T PRK13581 160 KAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAA 239 (526)
T ss_pred HhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHH
Confidence 99999999999987655566778887899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCCh
Q 046427 292 LVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPA 371 (595)
Q Consensus 292 L~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~ 371 (595)
|++||++|+|+||+||||++||++ ++|||++|||++|||+|++|.|++.+++..+++|+.+|++|+.+.+.||.|.++.
T Consensus 240 L~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~ 318 (526)
T PRK13581 240 LAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVNLPSITA 318 (526)
T ss_pred HHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceeeCCCCch
Confidence 999999999999999999999975 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhhC
Q 046427 372 EVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQR 451 (595)
Q Consensus 372 ~~~~~~~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~ 451 (595)
+..++++||+.+|+|||++++||+++ .|++++|+|+|||+ .++.+ ++|+|+++|+|+...++++|++||+++|+|+
T Consensus 319 ~~~~~~~~~~~la~riG~~a~ql~~~--~~~~v~i~~~Gsfa-~t~~~-~~d~A~l~GlLg~~~dd~~~~~nA~~iA~e~ 394 (526)
T PRK13581 319 EEAEKLKPYLDLAEKLGSLAAQLADG--PIKSVEITYRGELA-EEDTE-PLTAAALKGLLSPVLGERVNYVNAPLLAKER 394 (526)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHcCC--CceEEEEEEecccc-ccccc-HHHHHHHHHhCccccCCCccccCHHHHHHHc
Confidence 99999999999999999999999988 89999999999998 77774 8999999999988776559999999999999
Q ss_pred CceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEE-EEeCCeeEEEEEcceEEEeecCccEEEEEecC
Q 046427 452 GLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEG-RVKDGKPHLTKVGSFGVDVSLEGSIILCRQVD 530 (595)
Q Consensus 452 GI~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~G-SvgGG~i~I~~Idgf~v~~~~~~~~Liv~~~D 530 (595)
||+++|.+.+....|||++.+.+.+ ++++++|.| |+|||++||++||||+|++.|++|+|++.|+|
T Consensus 395 GI~~~~~~~~~~~~hpNtv~i~l~~-------------~~~~~~v~G~s~ggg~~~I~~ing~~v~~~~~~~~li~~~~D 461 (526)
T PRK13581 395 GIEVEESKSEESPDYSNLITVTVTT-------------DDGERSVAGTVFGDGEPRIVEIDGYRVDAKPEGHMLIIRNRD 461 (526)
T ss_pred CCEEEEEEecCCCCCCCEEEEEEEe-------------CCeEEEEEEEEecCCceEEEEECCEEEEeeCCceEEEEEeCC
Confidence 9999999988788899998886644 446888999 56678999999999999999999999999999
Q ss_pred CCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEEeC
Q 046427 531 QPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFLKL 595 (595)
Q Consensus 531 ~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i~~ 595 (595)
+||+|++|+++|++++|||++|+++|..+|++|+|++++|++++++++++|+++++|.++++++|
T Consensus 462 ~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~~~i~~ 526 (526)
T PRK13581 462 RPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSAKAVEL 526 (526)
T ss_pred cCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999986
No 3
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-85 Score=662.01 Aligned_cols=396 Identities=61% Similarity=0.854 Sum_probs=376.0
Q ss_pred eEEEecCCChhHHHHhhcCC-cEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChh
Q 046427 55 TVLVAEKLGEAGLDVLKNFA-NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLS 133 (595)
Q Consensus 55 ~il~~~~~~~~~~~~l~~~~-~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~ 133 (595)
+||+++++.+.+++.|++.+ +|++.+..+.||+.+.++++|++++|+.+++|+++|+++..+||+|+|+|+|+||||++
T Consensus 8 ~il~~e~~~~~~~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVDL~ 87 (406)
T KOG0068|consen 8 KILVAESLDQACIEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVDLK 87 (406)
T ss_pred eEEEecccchHHHHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccChh
Confidence 79999999999999999987 89998889999999999999999999999999999996667999999999999999999
Q ss_pred hHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhc
Q 046427 134 AATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKG 213 (595)
Q Consensus 134 aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~ 213 (595)
+|+++||.|+|+|.+|+.++|||+++|+++++|+++++..+|++|+|++..+.|.+|+|||+||+|+|+||+.+|+++++
T Consensus 88 AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseVA~r~k~ 167 (406)
T KOG0068|consen 88 AATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEVAVRAKA 167 (406)
T ss_pred hHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHH
Q 046427 214 LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALV 293 (595)
Q Consensus 214 ~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~ 293 (595)
+||+|++|||..+.+.++..|++.++++|+++.||||++|||+||+|++|+|.+.|++||+|+++||++||++||+.||+
T Consensus 168 ~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv 247 (406)
T KOG0068|consen 168 MGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALV 247 (406)
T ss_pred cCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHH
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeeEEEEecCCCCCCCC--CcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCCh
Q 046427 294 RALDSGIISQAALDVFTEEPPAK--DSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPA 371 (595)
Q Consensus 294 ~aL~~g~i~ga~lDv~~~EP~~~--~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~ 371 (595)
+||++|+++||++|||+.||+.. ++.|.++|||++|||+|++|.|||.+++.++++++.+|++| .....||.|.++.
T Consensus 248 ~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~-~~~g~Vna~~v~~ 326 (406)
T KOG0068|consen 248 RALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING-NSAGSVNAPEVAL 326 (406)
T ss_pred HHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc-Cccceechhhhhh
Confidence 99999999999999999999754 78999999999999999999999999999999999999999 6678999999999
Q ss_pred hhhhcccchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhhC
Q 046427 372 EVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQR 451 (595)
Q Consensus 372 ~~~~~~~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~ 451 (595)
+...+.+||+.+++++|+++.|++.+.++...+..+|.. |. ..++..+.+-+.+|+.++..+-.+|++|+..++++|
T Consensus 327 ~~l~~~~~~~~~a~~l~r~~~~~~~~~~~~~~~~~~~~s-~~--~~d~~~l~A~i~~~~~e~i~~~~~nLvn~~~~~k~r 403 (406)
T KOG0068|consen 327 ESLTELKPNIVLAEKLGRLVPGVLKGVNGVLSVHNIYKS-FS--DGDIALLRADISKGIIEPIKDIYVNLVNADAKAKQR 403 (406)
T ss_pred hhhhccCchhHHHHHHhhhhHHHhcCCccceeeeehhhh-cc--ccceeeeHHHHhccCcchHHHHHHHHhccchhhhhh
Confidence 999999999999999999999999885555655555543 43 578888888899999988888889999999999999
Q ss_pred Cce
Q 046427 452 GLR 454 (595)
Q Consensus 452 GI~ 454 (595)
|+.
T Consensus 404 ~l~ 406 (406)
T KOG0068|consen 404 GLY 406 (406)
T ss_pred ccC
Confidence 974
No 4
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-75 Score=629.85 Aligned_cols=394 Identities=31% Similarity=0.464 Sum_probs=351.3
Q ss_pred CCCCCeEEEecCCChhHHHHhhcC-C-cEEec-CCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccc
Q 046427 50 ITSKPTVLVAEKLGEAGLDVLKNF-A-NVDCS-YNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVG 126 (595)
Q Consensus 50 ~~~~~~il~~~~~~~~~~~~l~~~-~-~v~~~-~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G 126 (595)
++++++|++++.+.+...+.|++. . ++... ...+++++.+.+.++|++++++.+++++++++++ |+||||+++|+|
T Consensus 7 ~~~~~~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G 85 (409)
T PRK11790 7 PKDKIKFLLLEGVHQSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAA-EKLVAIGCFCIG 85 (409)
T ss_pred CCCCeEEEEECCCCHHHHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhC-CCCeEEEECcee
Confidence 345678999999988888888765 3 55442 2356788999999999998887778999999987 699999999999
Q ss_pred ccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHH
Q 046427 127 IDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTE 206 (595)
Q Consensus 127 ~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~ 206 (595)
+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|+|.+..+.|.+|.|||+||||+|+||+.
T Consensus 86 ~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~ 165 (409)
T PRK11790 86 TNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQ 165 (409)
T ss_pred cccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987655688999999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 207 VARRAKGLGMNVIAHDPYAQADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 207 vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
+|+++++|||+|++||++... ...++.. .++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+
T Consensus 166 vA~~~~~fGm~V~~~d~~~~~---~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 242 (409)
T PRK11790 166 LSVLAESLGMRVYFYDIEDKL---PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGT 242 (409)
T ss_pred HHHHHHHCCCEEEEECCCccc---ccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCc
Confidence 999999999999999986421 1123443 389999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhcCCeeEEEEecCCCCCCCCC----cccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 046427 286 VVDEEALVRALDSGIISQAALDVFTEEPPAKD----SKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAA 361 (595)
Q Consensus 286 ~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~----~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~ 361 (595)
+||++||+++|++|+|+||+||||++||++.+ +|||.+|||++|||+|++|.|++.+++..+++|+.+|++|+.+.
T Consensus 243 ~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~ 322 (409)
T PRK11790 243 VVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTL 322 (409)
T ss_pred ccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 99999999999999999999999999998763 69999999999999999999999999999999999999988777
Q ss_pred ccccCCCCChhhhhcccchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCCcccccchHHHHHhhccccccccccc
Q 046427 362 TAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNL 441 (595)
Q Consensus 362 ~~vn~~~~~~~~~~~~~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~ 441 (595)
+.||.|
T Consensus 323 ~~vn~~-------------------------------------------------------------------------- 328 (409)
T PRK11790 323 SAVNFP-------------------------------------------------------------------------- 328 (409)
T ss_pred cceecc--------------------------------------------------------------------------
Confidence 777752
Q ss_pred ccHHHHHhhCCceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEEEEeCCeeEEEEEcceEEEeecCc
Q 046427 442 VNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLEG 521 (595)
Q Consensus 442 ~nA~~iA~e~GI~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~GSvgGG~i~I~~Idgf~v~~~~~~ 521 (595)
.+. . . +....
T Consensus 329 ------------~~~---~----------------------------~---------------------------~~~~~ 338 (409)
T PRK11790 329 ------------EVS---L----------------------------P---------------------------EHPGG 338 (409)
T ss_pred ------------ccc---c----------------------------C---------------------------CCCCC
Confidence 000 0 0 11123
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i 593 (595)
|.|++.|+|+||+|++|+++|++++|||++|++.|.. +.|+++|++|+.++++++++|+++++|.+|+++
T Consensus 339 ~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~--~~A~~iie~D~~~~~~~~~~i~~i~~v~~v~~~ 408 (409)
T PRK11790 339 HRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDG--EIGYVVIDVDADYAEEALDALKAIPGTIRARLL 408 (409)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCC--CEEEEEEEeCCCCcHHHHHHHHcCCCeEEEEEe
Confidence 7888999999999999999999999999999997544 889999999999999999999999999999886
No 5
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-72 Score=589.61 Aligned_cols=315 Identities=48% Similarity=0.700 Sum_probs=291.8
Q ss_pred CCCeEEEecCCChhHHHHhhcCC--cEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccc
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNFA--NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDN 129 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~~--~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~ 129 (595)
+++++++++.+.+..++.++... ++......+.+++.+.++++|++++ +.+++++++++.+ |+||||+++|+|+||
T Consensus 2 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~-~~Lk~I~~~g~Gvd~ 79 (324)
T COG0111 2 MMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAA-PNLKAIGRAGAGVDN 79 (324)
T ss_pred CcceeeccCccCHHHHHHHHhccccccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhC-CCceEEEEccccccc
Confidence 57889999999999999887642 2333455677889999999999998 8899999999997 599999999999999
Q ss_pred cChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHH
Q 046427 130 VDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVAR 209 (595)
Q Consensus 130 iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~ 209 (595)
||+++++++||.|+|+|++|+.+||||++++||+++|+++.+++++|.|+|.+..+.|.+|+|||+||||+|+||+.+|+
T Consensus 80 id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~ 159 (324)
T COG0111 80 IDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAK 159 (324)
T ss_pred cCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999778889999999999999999999999
Q ss_pred HHhcCCCEEEEECCCCcHHHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhc
Q 046427 210 RAKGLGMNVIAHDPYAQADRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVD 288 (595)
Q Consensus 210 ~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd 288 (595)
++++|||+|++|||+...+.+...++. ..+|+++|++||||++|+|+|++|++|||++.|++||+|++|||||||++||
T Consensus 160 ~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVd 239 (324)
T COG0111 160 RLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVD 239 (324)
T ss_pred HHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceec
Confidence 999999999999998766555555554 4579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCC
Q 046427 289 EEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPM 368 (595)
Q Consensus 289 ~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~ 368 (595)
++||++||++|+|+||+||||++||++.++|||++|||++|||+|++|.|++.+++.++++|+.+|++|..+.+ |.|.
T Consensus 240 e~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~~--~~~~ 317 (324)
T COG0111 240 EDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVN--NAPE 317 (324)
T ss_pred HHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCCC--Cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999777 6665
Q ss_pred CC
Q 046427 369 VP 370 (595)
Q Consensus 369 ~~ 370 (595)
++
T Consensus 318 v~ 319 (324)
T COG0111 318 VD 319 (324)
T ss_pred cc
Confidence 44
No 6
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=4e-70 Score=571.93 Aligned_cols=313 Identities=30% Similarity=0.495 Sum_probs=288.4
Q ss_pred CCCeEEEecCCChhHHHHhhcCCcEEecC---CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccc
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSY---NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGID 128 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~~~v~~~~---~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d 128 (595)
|+++||+++.+.+...+.|++..++.... ..+.+++.+.+.++|++++++ .++++++++++ |+||+|+++|+|+|
T Consensus 1 ~~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~-~~~~~~~l~~~-p~Lk~I~~~g~G~d 78 (323)
T PRK15409 1 MKPSVILYKALPDDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSG-EKVDAALLEKM-PKLRAASTISVGYD 78 (323)
T ss_pred CCceEEEeCCCCHHHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcC-CCCCHHHHhhC-CCCeEEEECceecc
Confidence 56899999999888888888766665322 235678889999999998764 58999999988 69999999999999
Q ss_pred ccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc---ccceeeecCCEEEEEeCChHHH
Q 046427 129 NVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN---KYVGVSLVGKTLAVMGFGKVGT 205 (595)
Q Consensus 129 ~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktvGIIGlG~IG~ 205 (595)
|||+++|+++||.|+|+|++++++||||++++||+++|+++.+++.+++|+|... .+.|.+|+|||+||||+|+||+
T Consensus 79 ~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~ 158 (323)
T PRK15409 79 NFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGM 158 (323)
T ss_pred cccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHH
Confidence 9999999999999999999999999999999999999999999999999999743 2358899999999999999999
Q ss_pred HHHHHHh-cCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCC
Q 046427 206 EVARRAK-GLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 206 ~vA~~l~-~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg 284 (595)
.+|++++ +|||+|++||++...+.....+++++++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||
T Consensus 159 ~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG 238 (323)
T PRK15409 159 ALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRG 238 (323)
T ss_pred HHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCc
Confidence 9999998 999999999998654444566777889999999999999999999999999999999999999999999999
Q ss_pred chhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 046427 285 GVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAV 364 (595)
Q Consensus 285 ~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~v 364 (595)
++||++||++||++|+|+||+||||++||++.++|||++|||++|||+|++|.|++.+++..+++||.+|++|+++.+.|
T Consensus 239 ~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v 318 (323)
T PRK15409 239 PVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKNCV 318 (323)
T ss_pred cccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999998988
Q ss_pred cC
Q 046427 365 NA 366 (595)
Q Consensus 365 n~ 366 (595)
|.
T Consensus 319 n~ 320 (323)
T PRK15409 319 NP 320 (323)
T ss_pred Cc
Confidence 84
No 7
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=1.2e-68 Score=558.60 Aligned_cols=314 Identities=39% Similarity=0.587 Sum_probs=290.0
Q ss_pred CCCeEEEecCCChhHHHHhhcCCcEEecCCC-C-HhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccc
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSYNL-S-PEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDN 129 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~~~v~~~~~~-~-~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~ 129 (595)
||++++.+..+.+...+.|.+.+++...... + ..++.+..+++|++++...+++++++++.+ |+||+|+..|+||||
T Consensus 1 mk~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~-p~LKlIa~~~~G~D~ 79 (324)
T COG1052 1 MKIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKL-PGLKLIATRSAGYDN 79 (324)
T ss_pred CCcEEEecCcCCHHHHHHhhccEEEEEeccCCccchHHHHHhcCCcEEEEcCCCCcCHHHHHhC-CCcEEEEEeccccCc
Confidence 5778999999999988888877665543321 1 116788899999999986789999999998 799999999999999
Q ss_pred cChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc----cceeeecCCEEEEEeCChHHH
Q 046427 130 VDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK----YVGVSLVGKTLAVMGFGKVGT 205 (595)
Q Consensus 130 iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~----~~g~~l~gktvGIIGlG~IG~ 205 (595)
||+++|+++||.|+|+|++++++||||+++|||++.|++.++++.+|+|+|..+. ..|.+++|||+||||+|+||+
T Consensus 80 vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~ 159 (324)
T COG1052 80 VDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQ 159 (324)
T ss_pred ccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHH
Confidence 9999999999999999999999999999999999999999999999999998864 678899999999999999999
Q ss_pred HHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 206 EVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 206 ~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
++|+++++|||+|++||++..++..+..++.++++++++++||+|++|||+|++|+|+||++.|++||+|++|||+|||+
T Consensus 160 avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~ 239 (324)
T COG1052 160 AVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGG 239 (324)
T ss_pred HHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCcc
Confidence 99999999999999999988655556666888899999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCc---EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 046427 286 VVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHEN---VTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAAT 362 (595)
Q Consensus 286 ~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~n---vilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~ 362 (595)
+||++||++||++|+|+|||||||+.||.+.++||+.++| +++|||+|++|.|++.+|+..+++|+.+|++|+.+.+
T Consensus 240 ~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~ 319 (324)
T COG1052 240 LVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPN 319 (324)
T ss_pred ccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999999877899998877 9999999999999999999999999999999999988
Q ss_pred cccC
Q 046427 363 AVNA 366 (595)
Q Consensus 363 ~vn~ 366 (595)
.||.
T Consensus 320 ~v~~ 323 (324)
T COG1052 320 EVNP 323 (324)
T ss_pred CCCC
Confidence 8874
No 8
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=5.7e-67 Score=546.29 Aligned_cols=298 Identities=29% Similarity=0.470 Sum_probs=270.5
Q ss_pred eEEEecC--CChhHHHHhhcCCcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccCh
Q 046427 55 TVLVAEK--LGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDL 132 (595)
Q Consensus 55 ~il~~~~--~~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~ 132 (595)
||++.+. +.+..++.|++.+++......+++++.+.+.++|+++++ .+++++++++.+ |+||||+++|+|+||||+
T Consensus 2 ki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~ 79 (311)
T PRK08410 2 KIVILDAKTLGDKDLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITN-KVVIDKEVLSQL-PNLKLICITATGTNNVDI 79 (311)
T ss_pred eEEEEecCCCChhhHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhC-CCCeEEEEcccccccccH
Confidence 4776665 667777888776665543334578899999999998875 468999999988 599999999999999999
Q ss_pred hhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccccc------ceeeecCCEEEEEeCChHHHH
Q 046427 133 SAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKY------VGVSLVGKTLAVMGFGKVGTE 206 (595)
Q Consensus 133 ~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~------~g~~l~gktvGIIGlG~IG~~ 206 (595)
++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|+|.+... .+.+|+|||+||||+|+||+.
T Consensus 80 ~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~ 159 (311)
T PRK08410 80 EYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKR 159 (311)
T ss_pred HHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999985321 257899999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCch
Q 046427 207 VARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 207 vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~ 286 (595)
+|+++++|||+|++|||+... ...++..++|++++++||+|++|+|+|++|+++||++.|++||||++|||+|||++
T Consensus 160 vA~~~~~fgm~V~~~d~~~~~---~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~v 236 (311)
T PRK08410 160 VAKIAQAFGAKVVYYSTSGKN---KNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI 236 (311)
T ss_pred HHHHHhhcCCEEEEECCCccc---cccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccc
Confidence 999999999999999996532 12356677999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccC---CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 046427 287 VDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLH---ENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGE 358 (595)
Q Consensus 287 vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~---~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~ 358 (595)
||++||++||++|+|+ |+||||++||++.++|||.+ |||++|||+|++|.|++.++...+++|+.+|++|+
T Consensus 237 VDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~ 310 (311)
T PRK08410 237 VNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGG 310 (311)
T ss_pred cCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999 99999999999999999986 89999999999999999999999999999999885
No 9
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=1.1e-66 Score=548.91 Aligned_cols=313 Identities=39% Similarity=0.630 Sum_probs=286.8
Q ss_pred CCCeEEEecCCChhHHHHhhcCCcEEecC---CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcccccc
Q 046427 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSY---NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGID 128 (595)
Q Consensus 52 ~~~~il~~~~~~~~~~~~l~~~~~v~~~~---~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d 128 (595)
|++||++++.+.+...+.|++..++.... ..+.+++.+.++++|++++++.+++++++++++ |+||||+++|+|+|
T Consensus 1 ~~~kil~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~d 79 (333)
T PRK13243 1 MKPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAA-PRLRIVANYAVGYD 79 (333)
T ss_pred CCceEEEECCCCHHHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhC-CCCeEEEecCcccc
Confidence 56899999998888888887755554322 246788999999999999876678999999987 69999999999999
Q ss_pred ccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc-------ccceeeecCCEEEEEeCC
Q 046427 129 NVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN-------KYVGVSLVGKTLAVMGFG 201 (595)
Q Consensus 129 ~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~-------~~~g~~l~gktvGIIGlG 201 (595)
|||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|.|.+. .+.|.+|+||||||||+|
T Consensus 80 ~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G 159 (333)
T PRK13243 80 NIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFG 159 (333)
T ss_pred ccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcC
Confidence 9999999999999999999999999999999999999999999999999999752 125789999999999999
Q ss_pred hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEec
Q 046427 202 KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 202 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ 281 (595)
+||+.+|+++++|||+|++||++.........++...++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+
T Consensus 160 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~ 239 (333)
T PRK13243 160 RIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNT 239 (333)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEEC
Confidence 99999999999999999999998654444456677779999999999999999999999999999999999999999999
Q ss_pred cCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 046427 282 ARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAA 361 (595)
Q Consensus 282 arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~ 361 (595)
|||+++|++||+++|++|+|+||+||||+.||++ ++|||++|||++|||+|++|.|++.+++..+++|+.+|++|+.+.
T Consensus 240 aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~ 318 (333)
T PRK13243 240 ARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPP 318 (333)
T ss_pred cCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999987 899999999999999999999999999999999999999999888
Q ss_pred ccccC
Q 046427 362 TAVNA 366 (595)
Q Consensus 362 ~~vn~ 366 (595)
+.||.
T Consensus 319 ~~v~~ 323 (333)
T PRK13243 319 TLVNR 323 (333)
T ss_pred cccCH
Confidence 88874
No 10
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-65 Score=537.11 Aligned_cols=303 Identities=30% Similarity=0.469 Sum_probs=268.8
Q ss_pred eEEEecCC----ChhHHHHhhcC-CcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccc
Q 046427 55 TVLVAEKL----GEAGLDVLKNF-ANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDN 129 (595)
Q Consensus 55 ~il~~~~~----~~~~~~~l~~~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~ 129 (595)
||++.+.. .+...+.|++. .++.+....+.+++.+.+.++|+++++ .+++++++++++ |+||||+++|+|+||
T Consensus 2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~ 79 (317)
T PRK06487 2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISN-KVALDAAALAAA-PQLKLILVAATGTNN 79 (317)
T ss_pred eEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEe-CCCCCHHHHhhC-CCCeEEEEcCccccc
Confidence 46666542 23445566643 455554455678899999999998865 468999999987 699999999999999
Q ss_pred cChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc------cceeeecCCEEEEEeCChH
Q 046427 130 VDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK------YVGVSLVGKTLAVMGFGKV 203 (595)
Q Consensus 130 iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~------~~g~~l~gktvGIIGlG~I 203 (595)
||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|+|.+.. +.+.+|+|||+||||+|+|
T Consensus 80 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~I 159 (317)
T PRK06487 80 VDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGEL 159 (317)
T ss_pred cCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHH
Confidence 9999999999999999999999999999999999999999999999999997642 2356899999999999999
Q ss_pred HHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccC
Q 046427 204 GTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 204 G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
|+.+|+++++|||+|++||++... ..+..++|++++++||+|++|+|+|++|+++||++.|++||+|++|||+||
T Consensus 160 G~~vA~~l~~fgm~V~~~~~~~~~-----~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aR 234 (317)
T PRK06487 160 GGAVARLAEAFGMRVLIGQLPGRP-----ARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTAR 234 (317)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCc-----ccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCC
Confidence 999999999999999999986432 123456899999999999999999999999999999999999999999999
Q ss_pred CchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCccccc--CCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 046427 284 GGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVL--HENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAA 361 (595)
Q Consensus 284 g~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~--~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~ 361 (595)
|++||++||++||++|+|+||+||||++||++.++|||. +|||++|||+|++|.|++.+++..+++||.+|++|++.
T Consensus 235 G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~- 313 (317)
T PRK06487 235 GGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL- 313 (317)
T ss_pred ccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-
Confidence 999999999999999999999999999999998999995 89999999999999999999999999999999998743
Q ss_pred cccc
Q 046427 362 TAVN 365 (595)
Q Consensus 362 ~~vn 365 (595)
+.||
T Consensus 314 ~~v~ 317 (317)
T PRK06487 314 RVVS 317 (317)
T ss_pred cCCC
Confidence 4443
No 11
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=1.8e-64 Score=539.09 Aligned_cols=339 Identities=32% Similarity=0.409 Sum_probs=291.1
Q ss_pred CCCCCCeEEEecCCChh-HHHHhhcC-CcEEecC----CCCHhHHhhhc-CCceEEEEcCCCCCCHHHHhccCC-CceEE
Q 046427 49 FITSKPTVLVAEKLGEA-GLDVLKNF-ANVDCSY----NLSPEELCTKI-SLCDALIVRSGTKVTREVFESSAG-RLKVV 120 (595)
Q Consensus 49 ~~~~~~~il~~~~~~~~-~~~~l~~~-~~v~~~~----~~~~~el~~~i-~~~d~li~~~~~~i~~~~l~~~~~-~Lk~I 120 (595)
-+..+++|+++..+.+. ..+.|++. .++.... ..+.+++.+.+ .++|+++++..++++++++++++. +||+|
T Consensus 11 ~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I 90 (386)
T PLN02306 11 NPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAF 90 (386)
T ss_pred CCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEE
Confidence 34568899999998774 67788765 4664321 25788898887 579999988767899999999842 47999
Q ss_pred EEccccccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc---cceeeecCCEEEE
Q 046427 121 GRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK---YVGVSLVGKTLAV 197 (595)
Q Consensus 121 ~~~g~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~---~~g~~l~gktvGI 197 (595)
++.|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|+|.++. ..|.+|.||||||
T Consensus 91 ~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGI 170 (386)
T PLN02306 91 SNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGV 170 (386)
T ss_pred EECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999986432 3578999999999
Q ss_pred EeCChHHHHHHHHHh-cCCCEEEEECCCCcHHHH---HHcC------------Ccc-cCHHHhccccCEEEEeCCCChhc
Q 046427 198 MGFGKVGTEVARRAK-GLGMNVIAHDPYAQADRA---RATG------------VGL-VSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 198 IGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~~~a---~~~g------------~~~-~~l~ell~~aD~V~l~~Plt~~t 260 (595)
||+|+||+.+|++++ +|||+|++||++...... ...+ ++. .+|++++++||+|++|+|+|++|
T Consensus 171 iG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T 250 (386)
T PLN02306 171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTT 250 (386)
T ss_pred ECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhh
Confidence 999999999999985 999999999998643211 1121 122 48999999999999999999999
Q ss_pred cccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHH
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQ 340 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~ 340 (595)
++||+++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++ ++|||++|||++|||+|++|.+++
T Consensus 251 ~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~-~~~L~~~pNVilTPHiag~T~e~~ 329 (386)
T PLN02306 251 YHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYM-KPGLADMKNAVVVPHIASASKWTR 329 (386)
T ss_pred hhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCC-cchHhhCCCEEECCccccCcHHHH
Confidence 9999999999999999999999999999999999999999999999999999974 678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcccc--CCCCChh-hhhcccchhHHHHHHH
Q 046427 341 EGVAIEIAEAVIGALKGELAATAVN--APMVPAE-VISELAPFVTLAEKLG 388 (595)
Q Consensus 341 ~~~~~~~~~~l~~~l~g~~~~~~vn--~~~~~~~-~~~~~~p~~~la~rlG 388 (595)
++++..+++|+.+|++|+.+.+.|| .+.+.+. -.+..+|-+.-+..+|
T Consensus 330 ~~~~~~~~~ni~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (386)
T PLN02306 330 EGMATLAALNVLGKLKGYPVWGDPNRVEPFLNENAPPPAASPSIVNAKALG 380 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCCcccccchhhcccccCCCCcCCcceechhhhC
Confidence 9999999999999999999999999 3333321 1224456666555555
No 12
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-64 Score=526.13 Aligned_cols=273 Identities=32% Similarity=0.474 Sum_probs=251.9
Q ss_pred CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceEEeCCCCCchHHHHHHHHH
Q 046427 81 NLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIAL 160 (595)
Q Consensus 81 ~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l 160 (595)
..+++|+.+.+.++|++++ +.+++++++++++ |+||||++.|+|+||||+++|+++||.|+|+||+++.+||||++++
T Consensus 32 ~~~~~~~~~~~~~~d~ii~-~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l 109 (314)
T PRK06932 32 HTSAEQTIERAKDADIVIT-SKVLFTRETLAQL-PKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGM 109 (314)
T ss_pred CCChHHHHHHhCCCcEEEE-eCCCCCHHHHhhC-cCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHH
Confidence 4568899999999998876 4568999999987 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHchHHHHHHHHcCcccccc------cceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcC
Q 046427 161 LTAMARNIAQADASVKAGKWQRNK------YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG 234 (595)
Q Consensus 161 ~l~~~R~i~~~~~~~~~g~W~~~~------~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g 234 (595)
||+++|+++.+++.+++|+|.+.. +.+.+|+|||+||||+|.||+.+|+++++|||+|++||+..... ..
T Consensus 110 ~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~----~~ 185 (314)
T PRK06932 110 IFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV----CR 185 (314)
T ss_pred HHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc----cc
Confidence 999999999999999999997531 23568999999999999999999999999999999999754211 12
Q ss_pred CcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCC
Q 046427 235 VGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPP 314 (595)
Q Consensus 235 ~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~ 314 (595)
..+.+|++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+
T Consensus 186 ~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 186 EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 23568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccc----cCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 046427 315 AKDSKLV----LHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGEL 359 (595)
Q Consensus 315 ~~~~~L~----~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~ 359 (595)
+.++||| ++|||++|||+|++|.|+++++...+++|+.+|++|+.
T Consensus 266 ~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 266 EKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred CCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999998 48999999999999999999999999999999998763
No 13
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=2.7e-63 Score=525.46 Aligned_cols=311 Identities=27% Similarity=0.405 Sum_probs=275.1
Q ss_pred cCCCCCCeEEEecCCChhH----HHHhhcCCcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEc
Q 046427 48 TFITSKPTVLVAEKLGEAG----LDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRA 123 (595)
Q Consensus 48 ~~~~~~~~il~~~~~~~~~----~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~ 123 (595)
-+.++++|||++.+..+.. .+.++....+ .....+.+|+.+.+.++|+++++ ..++++++++.+ |+||||++.
T Consensus 13 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~ 89 (347)
T PLN02928 13 HSDMRPTRVLFCGPEFPASYSYTREYLQKYPFI-QVDAVAREDVPDVIANYDICVPK-MMRLDADIIARA-SQMKLIMQF 89 (347)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHhhcCCee-EecCCCHHHHHHHhcCCcEEEEC-CCCCCHHHHhcC-CCceEEEEC
Confidence 4567889999998877764 3444433322 22345678899999999998875 458999999987 699999999
Q ss_pred cccccccChhhHHhCCceEEeCCCC---CchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC
Q 046427 124 GVGIDNVDLSAATEHGCLVVNAPTA---NTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF 200 (595)
Q Consensus 124 g~G~d~iD~~aa~~~gI~V~n~p~~---~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl 200 (595)
|+|+||||+++|.++||.|+|+|++ ++.+||||++++||+++|+++.+++.+++|.|.+ ..+.+|+|||+||||+
T Consensus 90 ~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~gktvGIiG~ 167 (347)
T PLN02928 90 GVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE--PIGDTLFGKTVFILGY 167 (347)
T ss_pred CcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc--ccccCCCCCEEEEECC
Confidence 9999999999999999999999985 7899999999999999999999999999999975 3567899999999999
Q ss_pred ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHH-------------cCCcccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 201 GKVGTEVARRAKGLGMNVIAHDPYAQADRARA-------------TGVGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 201 G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~-------------~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
|.||+.+|+++++|||+|++||++........ .+....+|++++++||+|++|+|+|++|+++|+++
T Consensus 168 G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~ 247 (347)
T PLN02928 168 GAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDE 247 (347)
T ss_pred CHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHH
Confidence 99999999999999999999999753222111 11245689999999999999999999999999999
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHH
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEI 347 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~ 347 (595)
.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++++|||++||+++|||+|++|.+++.+++..+
T Consensus 248 ~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~ 327 (347)
T PLN02928 248 FLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIV 327 (347)
T ss_pred HHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcc
Q 046427 348 AEAVIGALKGELAATA 363 (595)
Q Consensus 348 ~~~l~~~l~g~~~~~~ 363 (595)
++|+.+|++|++..++
T Consensus 328 ~~nl~~~~~g~~~~~~ 343 (347)
T PLN02928 328 GDAALQLHAGRPLTGI 343 (347)
T ss_pred HHHHHHHHCCCCCCce
Confidence 9999999999876543
No 14
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-62 Score=523.55 Aligned_cols=291 Identities=30% Similarity=0.420 Sum_probs=264.5
Q ss_pred HHhhcCC-cEEecC--CCCHhHHhhhcCCceEEEEcCC--CCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceE
Q 046427 68 DVLKNFA-NVDCSY--NLSPEELCTKISLCDALIVRSG--TKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLV 142 (595)
Q Consensus 68 ~~l~~~~-~v~~~~--~~~~~el~~~i~~~d~li~~~~--~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V 142 (595)
++|++.+ ++.... ..+.+++.+.+.++|++|+... .++++++++++ |+||||+++|+|+||||+++|+++||.|
T Consensus 69 ~~l~~~g~~~v~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~a-p~LK~I~~~g~G~D~iDl~aa~~~gI~V 147 (386)
T PLN03139 69 DWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKA-KNLELLLTAGIGSDHIDLPAAAAAGLTV 147 (386)
T ss_pred HHHHhcCCeEEEeCCCCCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhC-CCccEEEECCccccccCHHHHHHCCeEE
Confidence 4455543 443322 2456788999999999998642 46999999987 6999999999999999999999999999
Q ss_pred EeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc--ccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE
Q 046427 143 VNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN--KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220 (595)
Q Consensus 143 ~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~--~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~ 220 (595)
+|+||+|+.+||||++++||++.|++.++++.+++|.|... ...+.+|.||||||||+|+||+.+|+++++|||+|++
T Consensus 148 ~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~ 227 (386)
T PLN03139 148 AEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY 227 (386)
T ss_pred EECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999999999999999999999853 2357899999999999999999999999999999999
Q ss_pred ECCCC-cHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 221 HDPYA-QADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 221 ~d~~~-~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
||++. ..+...+.|+..+ ++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++||++||++
T Consensus 228 ~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 228 HDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred ECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHc
Confidence 99975 3444456677654 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 046427 299 GIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGEL 359 (595)
Q Consensus 299 g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~ 359 (595)
|+|+||+||||++||++.++|||.+||+++|||+||.|.+++.+++..+++||.+|++|+.
T Consensus 308 G~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~ 368 (386)
T PLN03139 308 GHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGED 368 (386)
T ss_pred CCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 15
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=9.8e-63 Score=524.55 Aligned_cols=312 Identities=29% Similarity=0.448 Sum_probs=274.9
Q ss_pred CCCCeEEEecCCChhHH-HHhhcCC-cEEecC--CCCHhHHhhhcCCceEEEEcC--CCCCCHHHHhccCCCceEEEEcc
Q 046427 51 TSKPTVLVAEKLGEAGL-DVLKNFA-NVDCSY--NLSPEELCTKISLCDALIVRS--GTKVTREVFESSAGRLKVVGRAG 124 (595)
Q Consensus 51 ~~~~~il~~~~~~~~~~-~~l~~~~-~v~~~~--~~~~~el~~~i~~~d~li~~~--~~~i~~~~l~~~~~~Lk~I~~~g 124 (595)
+.+|--|+-.--.+.++ +.|++.+ ++.... ..+.+++.+.+.++|++|++. ..++++++++++ |+||||+++|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~-p~LK~I~~~g 122 (385)
T PRK07574 44 DFTPGELLGSVSGELGLRKFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKA-PNLKLAITAG 122 (385)
T ss_pred cCCCcceeeeccChhhHHHHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhC-CCCcEEEECC
Confidence 44454344332334443 5566653 554432 235788899999999999863 357999999987 6999999999
Q ss_pred ccccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc--cceeeecCCEEEEEeCCh
Q 046427 125 VGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK--YVGVSLVGKTLAVMGFGK 202 (595)
Q Consensus 125 ~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG~ 202 (595)
+|+||||+++|+++||.|+|+|++|+.+||||++++||++.|++...++.+++|+|.+.. ..+.+|+||||||||+|+
T Consensus 123 ~G~D~id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~ 202 (385)
T PRK07574 123 IGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGR 202 (385)
T ss_pred cccccccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCH
Confidence 999999999999999999999999999999999999999999999999999999998643 246899999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEe
Q 046427 203 VGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280 (595)
Q Consensus 203 IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN 280 (595)
||+.+|++|++|||+|++||++. ..+.....|+.. .++++++++||+|++|+|+|++|+++|+++.|++||+|++|||
T Consensus 203 IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN 282 (385)
T PRK07574 203 IGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVN 282 (385)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEE
Confidence 99999999999999999999986 334444567653 6899999999999999999999999999999999999999999
Q ss_pred ccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 046427 281 VARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELA 360 (595)
Q Consensus 281 ~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~ 360 (595)
+|||+++|++||++||++|+|+||+||||++||++.++|||.+||+++|||+|++|.|++.+++..+++||.+|++|++.
T Consensus 283 ~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~ 362 (385)
T PRK07574 283 TARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPI 362 (385)
T ss_pred CCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred Ccc
Q 046427 361 ATA 363 (595)
Q Consensus 361 ~~~ 363 (595)
++.
T Consensus 363 ~~~ 365 (385)
T PRK07574 363 RDE 365 (385)
T ss_pred CCC
Confidence 553
No 16
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=6.9e-60 Score=497.42 Aligned_cols=312 Identities=27% Similarity=0.424 Sum_probs=275.9
Q ss_pred CCCCeEEEecCCChhHHHHhhcCCcEEe--cCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCC--ceEEEEcccc
Q 046427 51 TSKPTVLVAEKLGEAGLDVLKNFANVDC--SYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGR--LKVVGRAGVG 126 (595)
Q Consensus 51 ~~~~~il~~~~~~~~~~~~l~~~~~v~~--~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~--Lk~I~~~g~G 126 (595)
+|+++|+++++.....++.+.+..++++ ......+|+.+.+.++|++++++.++++++++++++ + ||+|+++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~lk~I~~~~~G 79 (332)
T PRK08605 1 MTKIKIMSVRDEDAPYIKAWAEKHHVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLN-ELGIKQIAQRSAG 79 (332)
T ss_pred CcEEEEEecCHHHHHHHHHHHHhcCeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhh-hcCceEEEEcccc
Confidence 4678899988888788877765444432 222234566688999999999887899999999884 5 9999999999
Q ss_pred ccccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc-ccceeeecCCEEEEEeCChHHH
Q 046427 127 IDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN-KYVGVSLVGKTLAVMGFGKVGT 205 (595)
Q Consensus 127 ~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktvGIIGlG~IG~ 205 (595)
+||||+++|+++||.|+|+|++++.+||||++++||+++|++...++.+++|.|... ...|.+|+|++|||||+|.||+
T Consensus 80 ~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~ 159 (332)
T PRK08605 80 FDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGL 159 (332)
T ss_pred cchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHH
Confidence 999999999999999999999999999999999999999999999999999988432 2357899999999999999999
Q ss_pred HHHHHH-hcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccC
Q 046427 206 EVARRA-KGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 206 ~vA~~l-~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
++|+++ ++|||+|++||++..... ..++... ++++++++||+|++|+|++++|+++++++.++.||+|++|||++|
T Consensus 160 ~vA~~L~~~~g~~V~~~d~~~~~~~--~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sR 237 (332)
T PRK08605 160 AVAKIFAKGYGSDVVAYDPFPNAKA--ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCAR 237 (332)
T ss_pred HHHHHHHhcCCCEEEEECCCccHhH--HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCC
Confidence 999999 799999999998764321 2234444 899999999999999999999999999999999999999999999
Q ss_pred CchhcHHHHHHHHhcCCeeEEEEecCCCCC--CCCCc-----------ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHH
Q 046427 284 GGVVDEEALVRALDSGIISQAALDVFTEEP--PAKDS-----------KLVLHENVTVTPHLGASTTEAQEGVAIEIAEA 350 (595)
Q Consensus 284 g~~vd~~aL~~aL~~g~i~ga~lDv~~~EP--~~~~~-----------~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~ 350 (595)
|.++|+++|+++|++|+|+||+||||+.|| +|.++ +||.+|||++|||+|++|.|++++++..+++|
T Consensus 238 G~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n 317 (332)
T PRK08605 238 GSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDA 317 (332)
T ss_pred CcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 35554 49999999999999999999999999999999
Q ss_pred HHHHHcCCCCCcccc
Q 046427 351 VIGALKGELAATAVN 365 (595)
Q Consensus 351 l~~~l~g~~~~~~vn 365 (595)
+.+|++|+...+.+|
T Consensus 318 ~~~~~~g~~~~~~~~ 332 (332)
T PRK08605 318 TLEVLQTGTTRLRVN 332 (332)
T ss_pred HHHHHcCCCCCCCcC
Confidence 999999998888776
No 17
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-59 Score=493.24 Aligned_cols=308 Identities=25% Similarity=0.368 Sum_probs=266.2
Q ss_pred CeEEEecCCChh---HHHHhhcCC-cEEec-CCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccC-CCceEEEEccccc
Q 046427 54 PTVLVAEKLGEA---GLDVLKNFA-NVDCS-YNLSPEELCTKISLCDALIVRSGTKVTREVFESSA-GRLKVVGRAGVGI 127 (595)
Q Consensus 54 ~~il~~~~~~~~---~~~~l~~~~-~v~~~-~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~-~~Lk~I~~~g~G~ 127 (595)
+||++...-..+ ..+.+++.. ++... ...+ +|+.+.+.++|++++...++++++++++++ ++||+|++.|+|+
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~ 80 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKELLS-SATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGF 80 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEcCCCCC-HHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccccc
Confidence 567776543322 234455542 44442 2344 445889999999998766689999999984 3899999999999
Q ss_pred cccChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc-ccceeeecCCEEEEEeCChHHHH
Q 046427 128 DNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN-KYVGVSLVGKTLAVMGFGKVGTE 206 (595)
Q Consensus 128 d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktvGIIGlG~IG~~ 206 (595)
||||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|... ...+.+|+|++|||||+|.||+.
T Consensus 81 d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~ 160 (330)
T PRK12480 81 DMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAA 160 (330)
T ss_pred chhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999976422 24578999999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 207 VARRAKGLGMNVIAHDPYAQADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 207 vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
+|+++++|||+|++||++...... .... .++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+
T Consensus 161 vA~~L~~~G~~V~~~d~~~~~~~~---~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 161 TAKIYAGFGATITAYDAYPNKDLD---FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred HHHHHHhCCCEEEEEeCChhHhhh---hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc
Confidence 999999999999999987632211 1223 379999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhcCCeeEEEEecCCCCCCC-------------CCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 046427 286 VVDEEALVRALDSGIISQAALDVFTEEPPA-------------KDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVI 352 (595)
Q Consensus 286 ~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~-------------~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~ 352 (595)
++|++||++||++|+++||+||||+.||+. ..+|||++|||++|||+|++|.|++.++...+++|+.
T Consensus 238 ~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~ 317 (330)
T PRK12480 238 VINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAAL 317 (330)
T ss_pred ccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999962 1247999999999999999999999999999999999
Q ss_pred HHHcCCCCCcccc
Q 046427 353 GALKGELAATAVN 365 (595)
Q Consensus 353 ~~l~g~~~~~~vn 365 (595)
+|++|+...+.+|
T Consensus 318 ~~~~~~~~~~~~~ 330 (330)
T PRK12480 318 SVINTGTCETRLN 330 (330)
T ss_pred HHHhCCCCcccCC
Confidence 9999999888776
No 18
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=5.6e-57 Score=465.69 Aligned_cols=282 Identities=33% Similarity=0.507 Sum_probs=255.7
Q ss_pred CCHhHHhhhcCCceEEEEcCC-CCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceEEeCCCCCchHHHHHHHHH
Q 046427 82 LSPEELCTKISLCDALIVRSG-TKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIAL 160 (595)
Q Consensus 82 ~~~~el~~~i~~~d~li~~~~-~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l 160 (595)
.+.++....+.++...+.... ...+.+.+.+.+|+||+|+++|+|+||||+++|++|||+|+|+|+.++++|||+++++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~l 128 (336)
T KOG0069|consen 49 LIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSL 128 (336)
T ss_pred cchhhhhhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHH
Confidence 345566666776655554332 3578888888778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHchHHHHHHHHcCccccc--ccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcc
Q 046427 161 LTAMARNIAQADASVKAGKWQRN--KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGL 237 (595)
Q Consensus 161 ~l~~~R~i~~~~~~~~~g~W~~~--~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~ 237 (595)
+|.+.|++..+++.+++|+|... ...|..+.||||||+|+|+||+.+|++|++||+.+.+++++. ..+.+.+.+...
T Consensus 129 il~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~ 208 (336)
T KOG0069|consen 129 LLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEF 208 (336)
T ss_pred HHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccc
Confidence 99999999999999999999322 235678999999999999999999999999998888988876 466667777778
Q ss_pred cCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCC
Q 046427 238 VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKD 317 (595)
Q Consensus 238 ~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~ 317 (595)
+++++++++||+|++|||+|++|++++|++.|.+||+|++|||++||+++|++++++||++|+|+|||||||++|| +.+
T Consensus 209 ~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~ 287 (336)
T KOG0069|consen 209 VDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVD 287 (336)
T ss_pred cCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999 789
Q ss_pred cccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 046427 318 SKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAV 364 (595)
Q Consensus 318 ~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~v 364 (595)
++|++++|+++|||+|+.|.+++.+|+..++.|+.+++.|++....+
T Consensus 288 ~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~ 334 (336)
T KOG0069|consen 288 HPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPV 334 (336)
T ss_pred cchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcC
Confidence 99999999999999999999999999999999999999999765544
No 19
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=3.5e-56 Score=472.28 Aligned_cols=273 Identities=28% Similarity=0.417 Sum_probs=243.4
Q ss_pred CeEEEecCCChhHHHHhhcCCcEEecCC--CCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccC
Q 046427 54 PTVLVAEKLGEAGLDVLKNFANVDCSYN--LSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVD 131 (595)
Q Consensus 54 ~~il~~~~~~~~~~~~l~~~~~v~~~~~--~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD 131 (595)
+||++.+.++ ...+.+++.++|.+... .+.+ .++++|++++++.+++++++++ . ++||+|+++++|+||||
T Consensus 1 mkIl~d~~~~-~~~~~~~~~~ev~~~~~~~~~~~----~l~daD~liv~s~t~v~~~ll~-~-~~Lk~I~~~~~G~D~iD 73 (378)
T PRK15438 1 MKILVDENMP-YARELFSRLGEVKAVPGRPIPVA----QLADADALMVRSVTKVNESLLA-G-KPIKFVGTATAGTDHVD 73 (378)
T ss_pred CEEEEeCCcc-hHHHHHhhcCcEEEeCCCCCCHH----HhCCCcEEEEcCCCCCCHHHhc-C-CCCeEEEECcccccccC
Confidence 4789988774 66677777778776432 2333 4789999999998999999996 4 59999999999999999
Q ss_pred hhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHH
Q 046427 132 LSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRA 211 (595)
Q Consensus 132 ~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l 211 (595)
+++|+++||.|+|+||+|+.+||||++++||+++|+ .|.+|.||||||||+|+||+.+|+++
T Consensus 74 ~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~------------------~g~~L~gktvGIIG~G~IG~~vA~~l 135 (378)
T PRK15438 74 EAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER------------------DGFSLHDRTVGIVGVGNVGRRLQARL 135 (378)
T ss_pred HHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc------------------CCCCcCCCEEEEECcCHHHHHHHHHH
Confidence 999999999999999999999999999999999995 13579999999999999999999999
Q ss_pred hcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChh----ccccccHHHHhcCCCceEEEeccCCchh
Q 046427 212 KGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPA----TSKMFNDEAFFKMKKGVRIVNVARGGVV 287 (595)
Q Consensus 212 ~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~----t~~li~~~~l~~mk~gailiN~arg~~v 287 (595)
++|||+|++|||..... .....+.+|++++++||+|++|+|+|++ |++|++++.|++||+|++|||+|||++|
T Consensus 136 ~a~G~~V~~~dp~~~~~---~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vV 212 (378)
T PRK15438 136 EALGIKTLLCDPPRADR---GDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVV 212 (378)
T ss_pred HHCCCEEEEECCccccc---ccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhc
Confidence 99999999999854211 1223456899999999999999999996 9999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 046427 288 DEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALK 356 (595)
Q Consensus 288 d~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~ 356 (595)
|++||+++|++|++.||+||||++||. .+++|+.+++ ++|||+||+|.|++.+...++++++.+|+.
T Consensus 213 De~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~ 279 (378)
T PRK15438 213 DNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIG 279 (378)
T ss_pred CHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999996 5778988776 899999999999999999999999999993
No 20
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.7e-55 Score=468.54 Aligned_cols=284 Identities=28% Similarity=0.397 Sum_probs=248.7
Q ss_pred CeEEEecCCChhHHHHhhcCCcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChh
Q 046427 54 PTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLS 133 (595)
Q Consensus 54 ~~il~~~~~~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~ 133 (595)
+||++.+.++ ...+.+++.+++.+... .+...+.++++|++++++.+++++++++. ++||||+++++|+||||++
T Consensus 1 mkI~~d~~~p-~~~~~~~~~~~v~~~~~--~~~~~~~l~daD~liv~~~t~v~~~ll~~--~~Lk~I~~~~~G~D~iD~~ 75 (381)
T PRK00257 1 MKIVADENIP-LLDAFFAGFGEIRRLPG--RAFDRAAVRDADVLLVRSVTRVDRALLEG--SRVRFVGTCTIGTDHLDLD 75 (381)
T ss_pred CEEEEecCch-hHHHHHhhCCcEEEcCC--cccCHHHhCCceEEEEeCCCCCCHHHhcC--CCCeEEEECCccccccCHH
Confidence 5788888875 33556666667765432 11223467899999999988999999974 5899999999999999999
Q ss_pred hHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhc
Q 046427 134 AATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKG 213 (595)
Q Consensus 134 aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~ 213 (595)
+|+++||.|+|+||+|+.+||||++++||+++|+ .|.++.||||||||+|+||+.+|+++++
T Consensus 76 ~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~------------------~g~~l~gktvGIIG~G~IG~~va~~l~a 137 (381)
T PRK00257 76 YFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER------------------EGVDLAERTYGVVGAGHVGGRLVRVLRG 137 (381)
T ss_pred HHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc------------------cCCCcCcCEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999884 2457999999999999999999999999
Q ss_pred CCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCCh----hccccccHHHHhcCCCceEEEeccCCchhcH
Q 046427 214 LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTP----ATSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289 (595)
Q Consensus 214 ~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~----~t~~li~~~~l~~mk~gailiN~arg~~vd~ 289 (595)
|||+|++|||.... ...+..+.++++++++||+|++|+|+|+ .|+++|+++.|++||+|++|||+|||++||+
T Consensus 138 ~G~~V~~~Dp~~~~---~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde 214 (381)
T PRK00257 138 LGWKVLVCDPPRQE---AEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDN 214 (381)
T ss_pred CCCEEEEECCcccc---cccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCH
Confidence 99999999985421 1223456799999999999999999999 5999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 046427 290 EALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVN 365 (595)
Q Consensus 290 ~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn 365 (595)
+||+++|++|+++||+||||++||. .+++|+.. |+++|||+||+|.|++.++..++++|+.+|+.+.......+
T Consensus 215 ~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~~~~~~ 288 (381)
T PRK00257 215 QALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPARVSLTD 288 (381)
T ss_pred HHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCccchhc
Confidence 9999999999999999999999996 57889975 99999999999999999999999999999998876544333
No 21
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=2.6e-55 Score=457.98 Aligned_cols=267 Identities=24% Similarity=0.292 Sum_probs=235.2
Q ss_pred cCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChhh-----HHhCCceEEeCCC-CCchHHHHHHHHHHHHH
Q 046427 91 ISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSA-----ATEHGCLVVNAPT-ANTIAAAEHGIALLTAM 164 (595)
Q Consensus 91 i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~a-----a~~~gI~V~n~p~-~~~~~vAE~~l~l~l~~ 164 (595)
..++|+++++.. +.++++ . ++||||++.|+|+|++|... +..+||.|+|+++ +++.+||||++++||++
T Consensus 36 ~~~a~~~~~~~~---~~~~l~-~-~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~ 110 (312)
T PRK15469 36 NDPADYALVWHP---PVEMLA-G-RDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHW 110 (312)
T ss_pred CccCeEEEEeCC---ChHHhc-c-CCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHH
Confidence 478999887542 567775 3 59999999999999998322 3458999999975 68999999999999999
Q ss_pred HHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhc
Q 046427 165 ARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAI 244 (595)
Q Consensus 165 ~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell 244 (595)
+|+++.+.+.+++|+|.+. .+.++.||||||||+|.||+.+|+++++|||+|++||++.........-....++++++
T Consensus 111 ~r~~~~~~~~~~~~~w~~~--~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l 188 (312)
T PRK15469 111 FRRFDDYQALQNSSHWQPL--PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFL 188 (312)
T ss_pred HcChHHHHHHHHhCCcCCC--CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHH
Confidence 9999999999999999753 45689999999999999999999999999999999998653211000011235899999
Q ss_pred cccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCC
Q 046427 245 STADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHE 324 (595)
Q Consensus 245 ~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~ 324 (595)
++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||++||++||++|+++||+||||++||+|.++|||.+|
T Consensus 189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~ 268 (312)
T PRK15469 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHP 268 (312)
T ss_pred hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccC
Q 046427 325 NVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNA 366 (595)
Q Consensus 325 nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~ 366 (595)
|+++|||+|++|.++ ++...+++|+.+|++|+++.+.|+.
T Consensus 269 nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~~~V~~ 308 (312)
T PRK15469 269 RVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVCGQVDR 308 (312)
T ss_pred CeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCcccCCc
Confidence 999999999999886 4678889999999999999888874
No 22
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-54 Score=450.52 Aligned_cols=283 Identities=27% Similarity=0.404 Sum_probs=244.5
Q ss_pred eEEEecCCChhHHHHhhcC---CcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccC
Q 046427 55 TVLVAEKLGEAGLDVLKNF---ANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVD 131 (595)
Q Consensus 55 ~il~~~~~~~~~~~~l~~~---~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD 131 (595)
++++..++.+...+.+.+. .++.... ...++|+++++.. . ..+ ++||||++.|+|+||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~a~~~~~~~~------~-~~~-~~Lk~I~~~~aG~D~id 64 (303)
T PRK06436 2 NVYVNFPMSKKLLEICRDILDLDDVHWYP---------DYYDAEAILIKGR------Y-VPG-KKTKMIQSLSAGVDHID 64 (303)
T ss_pred eEEEEccCCHHHHHHHHhhcccceeEecc---------ccCCCCEEEecCC------c-CCC-CCeEEEEECCcccCccc
Confidence 3666678888877765542 2333211 2568888876542 1 223 59999999999999999
Q ss_pred hhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHH
Q 046427 132 LSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRA 211 (595)
Q Consensus 132 ~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l 211 (595)
+++|+++||.++|. |+++.+||||++++||+++|+++..++.+++|+|.+. .+.+|+|||+||||+|+||+.+|+++
T Consensus 65 ~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~--~~~~L~gktvgIiG~G~IG~~vA~~l 141 (303)
T PRK06436 65 VSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS--PTKLLYNKSLGILGYGGIGRRVALLA 141 (303)
T ss_pred HHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC--CCCCCCCCEEEEECcCHHHHHHHHHH
Confidence 99999998887774 8999999999999999999999999999999999864 46799999999999999999999999
Q ss_pred hcCCCEEEEECCCCcHHHHHHcCC--cccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcH
Q 046427 212 KGLGMNVIAHDPYAQADRARATGV--GLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289 (595)
Q Consensus 212 ~~~G~~V~~~d~~~~~~~a~~~g~--~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~ 289 (595)
++|||+|++||++... .++ ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+++|+
T Consensus 142 ~afG~~V~~~~r~~~~-----~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~ 216 (303)
T PRK06436 142 KAFGMNIYAYTRSYVN-----DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDK 216 (303)
T ss_pred HHCCCEEEEECCCCcc-----cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCH
Confidence 9999999999987532 122 245899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCccccC
Q 046427 290 EALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLG-ASTTEAQEGVAIEIAEAVIGALKGELAATAVNA 366 (595)
Q Consensus 290 ~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~-~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~ 366 (595)
++|+++|++|+++||+||||++||++.++ .+||+++|||++ +.|.|+++++...+++|+.+|++|++ .+.||.
T Consensus 217 ~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~~ 290 (303)
T PRK06436 217 NDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIVRK 290 (303)
T ss_pred HHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceEch
Confidence 99999999999999999999999987665 589999999976 58999999999999999999999876 577764
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=6e-46 Score=358.59 Aligned_cols=176 Identities=45% Similarity=0.739 Sum_probs=159.3
Q ss_pred HHHHHHHHHchHHHHHHHHcCcc-cccccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH-HHHcCC
Q 046427 158 IALLTAMARNIAQADASVKAGKW-QRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR-ARATGV 235 (595)
Q Consensus 158 l~l~l~~~R~i~~~~~~~~~g~W-~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~g~ 235 (595)
+++||++.|+++.+++.+++|.| .+....+.+++|+||||||+|+||+.+|+++++|||+|++|||+..... +...++
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 58999999999999999999999 3345678899999999999999999999999999999999999986544 566777
Q ss_pred cccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCC
Q 046427 236 GLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPA 315 (595)
Q Consensus 236 ~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~ 315 (595)
...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+++||+||||+.||++
T Consensus 81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 160 (178)
T PF02826_consen 81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP 160 (178)
T ss_dssp EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCcEEEcCCCC
Q 046427 316 KDSKLVLHENVTVTPHLG 333 (595)
Q Consensus 316 ~~~~L~~~~nvilTPHi~ 333 (595)
.++|||++||+++|||+|
T Consensus 161 ~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 161 ADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTHHHHTSTTEEEESS-T
T ss_pred CCChHHcCCCEEEeCccC
Confidence 999999999999999986
No 24
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=100.00 E-value=1.2e-39 Score=321.63 Aligned_cols=188 Identities=16% Similarity=0.195 Sum_probs=171.3
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhhCCceEEE
Q 046427 378 APFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTE 457 (595)
Q Consensus 378 ~p~~~la~rlG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~GI~v~f 457 (595)
+.|-.+|+|||++++||+++ .+++|+++|+|+++ .++++|++++|+++|||++..+ ++|++||+.+|+|+||++.|
T Consensus 19 ssht~laerlG~l~~ql~~~--~~~~I~i~~~Gsla-~t~~~~~~~~A~l~GlL~~~~~-~vn~vNA~~iAkerGI~v~~ 94 (208)
T TIGR00719 19 SSHTAGAAKIANVARSIFGN--EPEQIEFQFHGSFA-ETFKGHGTDRAIIGGILDFDPD-DDRIKTAFEIAEAAGIDIEF 94 (208)
T ss_pred hhHHHHHHHHHHHHHHHhcC--CCcEEEEEEEeeec-ccCCCchHHHHHHhhhcCCCCC-chHHHHHHhhhhhcCceEEE
Confidence 35899999999999999998 89999999999998 6799999999999999988776 79999999999999999999
Q ss_pred EEeecCC-CCCCCceEEEEEeeeccccccccccCCceEEEEEEE-eCCeeEEEEEcceEEEeecCccEEEEEecCCCCch
Q 046427 458 ERIVLDG-SPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRV-KDGKPHLTKVGSFGVDVSLEGSIILCRQVDQPGII 535 (595)
Q Consensus 458 ~~~~~~~-~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~GSv-gGG~i~I~~Idgf~v~~~~~~~~Liv~~~D~pG~I 535 (595)
.+.+... .|||+..+...+. ++.++++.|++ +||.+||++||||+||+.|++|+|++.|.|+||+|
T Consensus 95 ~~~~~~~~~~~n~v~i~v~~~------------~g~~~~v~Gts~ggg~~riv~idg~~vd~~~~g~~L~~~~~D~PG~I 162 (208)
T TIGR00719 95 RTEDAGDNVHPNSAKITFSDE------------KGEEEELIGISIGGGAIEITEINGFAIEFRGEHPAILLEHNDKFGTI 162 (208)
T ss_pred EECCCCCCCCCCeEEEEEEcC------------CCCEEEEEEEEeCCCeEEEEEECCEEEEecCCccEEEEEeCCCCChH
Confidence 8877666 7898877655331 23448899955 56899999999999999999999999999999999
Q ss_pred hHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHH
Q 046427 536 GKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKI 581 (595)
Q Consensus 536 ~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L 581 (595)
++|+++|++++|||++|+++|..++++|+|+|++|+++|+++|++|
T Consensus 163 g~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~i 208 (208)
T TIGR00719 163 AGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDAI 208 (208)
T ss_pred HHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhhC
Confidence 9999999999999999999999999999999999999999999975
No 25
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.97 E-value=3e-31 Score=270.99 Aligned_cols=291 Identities=31% Similarity=0.435 Sum_probs=249.5
Q ss_pred HhhcCCcEEecCCCCHhHHhhhc-CCce-EEEEcCCCCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceEEeCC
Q 046427 69 VLKNFANVDCSYNLSPEELCTKI-SLCD-ALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAP 146 (595)
Q Consensus 69 ~l~~~~~v~~~~~~~~~el~~~i-~~~d-~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p 146 (595)
+|+....+-++...+-.|+.+++ ..+- ++.+. ...++++.+++.+ -||++.+.|.|+||+|+.+|.+.||.|+|.|
T Consensus 48 ilk~~atvafcdaqstqeIhekvLneavgam~yh-~i~l~reDlEkfk-alRv~~rig~g~dn~dikaAseL~iavC~ip 125 (435)
T KOG0067|consen 48 ILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYH-TITLPREDLEKFK-ALRVIVRIGSGYDNIDIKAASELGIAVCNIP 125 (435)
T ss_pred hhhcchheeeecccchHHHHHHHHHHhhhcceee-ecccchhhHHHhh-hhceeeeeccccchhhhhhhhhheeeeeccc
Confidence 35555566666666666776643 3332 33333 3468999999985 6999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccc-------cceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEE
Q 046427 147 TANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK-------YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVI 219 (595)
Q Consensus 147 ~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~-------~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~ 219 (595)
+...+.+|+-++.++|.++|+-....+.+++|.|.... .-....+|.++|++|+|++|+.++.++++||+.|+
T Consensus 126 ~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~i 205 (435)
T KOG0067|consen 126 SDAVEETADSTLCHILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVI 205 (435)
T ss_pred chhHHHHHHHHHHHHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceee
Confidence 99999999999999999999999999999999996532 12346899999999999999999999999999999
Q ss_pred EECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 220 AHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 220 ~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.|||+......+.+|.+.+ ++.+++-++|.+++||-+.+.+.++|+.-.+.+|+.|++++|++||+++|+.+|.++|++
T Consensus 206 fydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~ 285 (435)
T KOG0067|consen 206 FYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKS 285 (435)
T ss_pred eecchhhhhhhhhcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhcc
Confidence 9999986666677888765 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEecCCCCCC-CCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC---CccccCCC
Q 046427 299 GIISQAALDVFTEEPP-AKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELA---ATAVNAPM 368 (595)
Q Consensus 299 g~i~ga~lDv~~~EP~-~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~---~~~vn~~~ 368 (595)
|++.|++ |. -...||.+.||.++|||.+++++.+..++.+.++..+...+.|..+ +++||+..
T Consensus 286 G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnkE~ 352 (435)
T KOG0067|consen 286 GRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVNKEF 352 (435)
T ss_pred Cceeccc-------CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHhhhh
Confidence 9999887 11 1345788899999999999999999999999999999999988754 45666543
No 26
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.89 E-value=4.8e-24 Score=227.71 Aligned_cols=331 Identities=19% Similarity=0.174 Sum_probs=232.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHc--CCc---ccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARAT--GVG---LVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--g~~---~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
++|+|||+|.||+++|+.++..|++|.+|++.... ...... ++. ..++++++++||+|++|+|. ..+..++..
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl~~ 79 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALLAE 79 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHHHH
Confidence 47999999999999999999999888887765532 222233 321 13678899999999999996 456766643
Q ss_pred HHHh-cCCCceEEEeccCCchhcHHHHHHHHhcC-CeeE----EEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHH
Q 046427 267 EAFF-KMKKGVRIVNVARGGVVDEEALVRALDSG-IISQ----AALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQ 340 (595)
Q Consensus 267 ~~l~-~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~g----a~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~ 340 (595)
... .++++++++|++..+.-..+++.+.+..+ ++.+ ++....+.+ .+...||.+..+++||+-...
T Consensus 80 -l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~--aa~~~lf~g~~~il~~~~~~~----- 151 (359)
T PRK06545 80 -LADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVA--AARADLFENAPWVLTPDDHTD----- 151 (359)
T ss_pred -HhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHH--HhcHHHHCCCcEEEecCCCCC-----
Confidence 223 47899999999987764445544443222 2211 111111111 234578999999999975433
Q ss_pred HHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHH---HHHHH---HHHHHHhcCCCCceEEEEEEeecC
Q 046427 341 EGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTL---AEKLG---GLAVQLVAGGSGVKSVKVSYASAR 412 (595)
Q Consensus 341 ~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~l---a~rlG---~l~~qL~~g~~~~k~v~i~~~Gs~ 412 (595)
.+..+.+.++++.-+.......+..|+..+..++ ||+.. +..++ ..+.+|+++ +|+++++...+++
T Consensus 152 ----~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al~~~~~~~~~~~~~la~~--gfrd~tRia~~~p 225 (359)
T PRK06545 152 ----PDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSLAARLAGEHPLALRLAAG--GFRDITRIASSDP 225 (359)
T ss_pred ----HHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHHHHhhccCchHHHhhhcc--cccCCccccCCCH
Confidence 2233456666666666666667888898888888 87644 33333 235678888 8999999999999
Q ss_pred CCCCcccccchHHHHHhhcccccccccccccHHHHHhhCCceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCc
Q 046427 413 GPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIG 492 (595)
Q Consensus 413 a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~GI~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~ 492 (595)
. +|.+....++..+...|+.+..+...++++++--++..+.-.|.... .++.-+.... .|
T Consensus 226 ~-~w~di~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~------~~r~~~~~~~----------~~--- 285 (359)
T PRK06545 226 G-MWRDILESNAEALLDALDEWIEDLDRARDALESGDAEAIAELFDAGK------AGRDRLPGKH----------GG--- 285 (359)
T ss_pred H-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHhCcccc----------CC---
Confidence 8 99999999999888889888876677777776544444444343321 1211111110 01
Q ss_pred eEEEEEEEeCCeeEEEEEcceEEEeecCccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC
Q 046427 493 DIRVEGRVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE 572 (595)
Q Consensus 493 ~~~v~GSvgGG~i~I~~Idgf~v~~~~~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~ 572 (595)
..++++.|++..+|+||.|+.|.++|++++|||.++++.+.+++..++..+.++..
T Consensus 286 ------------------------~~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~~ 341 (359)
T PRK06545 286 ------------------------AIPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKNE 341 (359)
T ss_pred ------------------------CCCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCCH
Confidence 45788999999999999999999999999999999999988888889999999987
Q ss_pred CcHHHHHHHh
Q 046427 573 PSREVLKKIG 582 (595)
Q Consensus 573 ~~~e~l~~L~ 582 (595)
-+.+...++.
T Consensus 342 ~~~~~~~~~~ 351 (359)
T PRK06545 342 EDRERAKALL 351 (359)
T ss_pred HHHHHHHHHH
Confidence 7665554443
No 27
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.87 E-value=1.3e-21 Score=180.01 Aligned_cols=101 Identities=40% Similarity=0.572 Sum_probs=91.1
Q ss_pred EEEecCCChhHHHHhhcCCcEEecCCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChhhH
Q 046427 56 VLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAA 135 (595)
Q Consensus 56 il~~~~~~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa 135 (595)
||+++++++..+++|++..++.+....+.+++.+.++++|++++++.+++++++++.+ |+||||++.|+|+||||+++|
T Consensus 1 ili~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a 79 (133)
T PF00389_consen 1 ILITDPLPDEEIERLEEGFEVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGVDNIDLEAA 79 (133)
T ss_dssp EEESSS-SHHHHHHHHHTSEEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSCTTB-HHHH
T ss_pred eEEeccCCHHHHHHHHCCceEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEcccccCcccHHHH
Confidence 7899999999999999833888877888999999999999999988777999999998 699999999999999999999
Q ss_pred HhCCceEEeCCCCCchHHHHHH
Q 046427 136 TEHGCLVVNAPTANTIAAAEHG 157 (595)
Q Consensus 136 ~~~gI~V~n~p~~~~~~vAE~~ 157 (595)
+++||.|+|+||+++.+||||+
T Consensus 80 ~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 80 KERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHTTSEEEE-TTTTHHHHHHHH
T ss_pred hhCeEEEEEeCCcCCcchhccc
Confidence 9999999999999999999999
No 28
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.86 E-value=6.9e-21 Score=206.13 Aligned_cols=169 Identities=21% Similarity=0.304 Sum_probs=141.0
Q ss_pred EccccccccC-hhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC
Q 046427 122 RAGVGIDNVD-LSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF 200 (595)
Q Consensus 122 ~~g~G~d~iD-~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl 200 (595)
-.++|+...- ++.....||+|+|+|++++.+++|+++++++++. +..+|.+ +.++.||+++|+|+
T Consensus 197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~--------~~~LaGKtVgVIG~ 262 (476)
T PTZ00075 197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT--------DVMIAGKTVVVCGY 262 (476)
T ss_pred cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc--------CCCcCCCEEEEECC
Confidence 3578887642 2333446899999999999999999999999988 3344443 34799999999999
Q ss_pred ChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEE
Q 046427 201 GKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIV 279 (595)
Q Consensus 201 G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gaili 279 (595)
|.||+.+|+++++|||+|+++++++.. ..+...|++.+++++++++||+|++|+ .+.++|+++.|+.||+|++|+
T Consensus 263 G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAiLI 338 (476)
T PTZ00075 263 GDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAIVG 338 (476)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcEEE
Confidence 999999999999999999999766532 234556888789999999999999985 478999999999999999999
Q ss_pred eccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCC
Q 046427 280 NVARGGVVDEEALVRALDSGIISQAALDVFTEEPPA 315 (595)
Q Consensus 280 N~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~ 315 (595)
|+||+ |++.+.++|+.+. ++|+++.||..
T Consensus 339 NvGr~---d~Ei~i~aL~~~~----~vdv~evep~v 367 (476)
T PTZ00075 339 NIGHF---DNEIQVAELEAYP----GIEIVEIKPQV 367 (476)
T ss_pred EcCCC---chHHhHHHHHhcC----CceeecccCCC
Confidence 99999 7788888887653 78999999864
No 29
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.83 E-value=5.2e-21 Score=203.43 Aligned_cols=314 Identities=14% Similarity=0.128 Sum_probs=211.4
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhc-CCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHH
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKG-LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~-~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~ 268 (595)
.-.||+|||+ |.||+++|+.++. +|.+|++||+... ...++++.+++||+|++|+|. ..+..++.+-.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------~~~~~~~~v~~aDlVilavPv-~~~~~~l~~l~ 72 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------GSLDPATLLQRADVLIFSAPI-RHTAALIEEYV 72 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------ccCCHHHHhcCCCEEEEeCCH-HHHHHHHHHHh
Confidence 4569999999 9999999999995 6999999998410 123578889999999999995 44666664321
Q ss_pred -H-hcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCC--CCcccccCCcEEEcCCCCCCcHHHHHHHH
Q 046427 269 -F-FKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPA--KDSKLVLHENVTVTPHLGASTTEAQEGVA 344 (595)
Q Consensus 269 -l-~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~--~~~~L~~~~nvilTPHi~~~t~ea~~~~~ 344 (595)
+ ..+|++++|+|++.-+---.+++... ..++ -+.-|.. ..+.+|++.++++||. ...+.
T Consensus 73 ~~~~~l~~~~iVtDVgSvK~~i~~~~~~~--~~~f-------VG~HPMaG~E~s~lf~g~~~iltp~---~~~~~----- 135 (370)
T PRK08818 73 ALAGGRAAGQLWLDVTSIKQAPVAAMLAS--QAEV-------VGLHPMTAPPKSPTLKGRVMVVCEA---RLQHW----- 135 (370)
T ss_pred hhhcCCCCCeEEEECCCCcHHHHHHHHhc--CCCE-------EeeCCCCCCCCCcccCCCeEEEeCC---CchhH-----
Confidence 1 24799999999998774333333221 1122 2223432 1246899999999996 11111
Q ss_pred HHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--ch---hHHHHHHH-------HHHH--HHhcCCCCce----EEEE
Q 046427 345 IEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PF---VTLAEKLG-------GLAV--QLVAGGSGVK----SVKV 406 (595)
Q Consensus 345 ~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~---~~la~rlG-------~l~~--qL~~g~~~~k----~v~i 406 (595)
.+.+.++++..+.+.....|..|+..+..++ || +.++..+. .+.. .+.++ +|+ .+++
T Consensus 136 ---~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~~~~~~~~~~~~~~~f~~~--gFr~d~t~iTR 210 (370)
T PRK08818 136 ---SPWVQSLCSALQAECVYATPEHHDRVMALVQAMVHATHLAQAGVLRDYAPLLGELRALMPYRSA--SFELDTAVIAR 210 (370)
T ss_pred ---HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccccch--hhHHHhhhcch
Confidence 2346666666677888889999999999998 55 44443331 1111 33444 677 6679
Q ss_pred EEeecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhhCCceEE---EEEeec----CCCC--CCCceEEEEEe
Q 046427 407 SYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVT---EERIVL----DGSP--ENPLEFIQVQI 477 (595)
Q Consensus 407 ~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~GI~v~---f~~~~~----~~~h--pnt~~~~~~~~ 477 (595)
.+++++. +|.+++..|+ .+.-.|+.+.++...+.++.+--++.+|.-. |..... .+.- .||.. ..
T Consensus 211 IAss~P~-mW~dI~~~N~-~i~~~l~~~~~~L~~l~~~i~~~D~~~~~~~~~~f~~a~~~~~~r~~~~~~~~~~----~~ 284 (370)
T PRK08818 211 ILSLNPS-IYEDIQFGNP-YVGEMLDRLLAQLQELRALVAQGDDAARARFRAQFLHANAQALQEDALAAGNYTY----ER 284 (370)
T ss_pred hhcCCHH-HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchhhCCcccccc----cc
Confidence 9999998 9999999999 6666677766655566666543343333322 222211 0000 13310 00
Q ss_pred eeccccccccccCCceEEEEEEEeCCeeEEEEEcceEEEeec----CccEEEEEec-CCCCchhHHHhhhhcCCccccce
Q 046427 478 ANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSL----EGSIILCRQV-DQPGIIGKVGSLLGDNNVNVNFM 552 (595)
Q Consensus 478 ~~~~~~~g~sig~~~~~~v~GSvgGG~i~I~~Idgf~v~~~~----~~~~Liv~~~-D~pG~I~~I~~~L~~~~INIa~m 552 (595)
.| ..+ +.+.|++.-+ |+||.|++|.++|++++|||.++
T Consensus 285 ----------~g---------------------------~~~~~~~~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~I 327 (370)
T PRK08818 285 ----------VG---------------------------YLLADLTEPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSI 327 (370)
T ss_pred ----------cc---------------------------cccCCCCcceEEEEECCCCCCChHHHHHHHHHHcCcccceE
Confidence 01 344 6788888885 99999999999999999999999
Q ss_pred EeeeecCCCcEEEEEEcCCCCcHHHHHH
Q 046427 553 SVGRIAPQKQAVMTIGVDEEPSREVLKK 580 (595)
Q Consensus 553 ~v~r~~~g~~al~vi~~d~~~~~e~l~~ 580 (595)
+..+.+.++.. ..|++...-+...+.+
T Consensus 328 es~~~r~~~y~-f~i~~~~~~~~~~~~~ 354 (370)
T PRK08818 328 HSSRTPAGELH-FRIGFEPGSDRAALAR 354 (370)
T ss_pred EEecccCceEE-EEEEEeccccHHHHHH
Confidence 99888887766 7788888666655544
No 30
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.78 E-value=7e-19 Score=182.15 Aligned_cols=164 Identities=24% Similarity=0.365 Sum_probs=134.6
Q ss_pred cCCceEEEEcC----------------CCCCCHHHHhccCCCceEEEEccccccccChh-hHHhCCceEE------eCCC
Q 046427 91 ISLCDALIVRS----------------GTKVTREVFESSAGRLKVVGRAGVGIDNVDLS-AATEHGCLVV------NAPT 147 (595)
Q Consensus 91 i~~~d~li~~~----------------~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~-aa~~~gI~V~------n~p~ 147 (595)
+.++|++|.-- ...+++++++.++ .++...+|+++.|++ +|+++||.|+ |++.
T Consensus 52 ~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~----~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~ 127 (287)
T TIGR02853 52 LTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK----GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAI 127 (287)
T ss_pred hccCCEEEECCccccCCceEecccccCCccccHHHHHhcC----CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEE
Confidence 67788877521 1236788888763 477789999999998 9999999999 9999
Q ss_pred CCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-
Q 046427 148 ANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ- 226 (595)
Q Consensus 148 ~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~- 226 (595)
+|+.++||+++++++.. .+.+++|++++|+|+|.||+.+|++|+++|++|+++|++..
T Consensus 128 ~n~~~~Ae~ai~~al~~---------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~ 186 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEH---------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSAD 186 (287)
T ss_pred EccHhHHHHHHHHHHHh---------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 99999999999877732 23478999999999999999999999999999999998763
Q ss_pred HHHHHHcCCccc---CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCC
Q 046427 227 ADRARATGVGLV---SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 227 ~~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg 284 (595)
...+.+.|.... +++++++++|+|++|+|.+ +++++.++.||+++++||++..
T Consensus 187 ~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~ 242 (287)
T TIGR02853 187 LARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASK 242 (287)
T ss_pred HHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcC
Confidence 233444565433 5778899999999999963 6788899999999999999963
No 31
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.59 E-value=1.6e-15 Score=156.65 Aligned_cols=242 Identities=11% Similarity=0.067 Sum_probs=163.4
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCc--ccCHHHhccccCEEEEeCCCChhccccccHHHHh
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVG--LVSFEEAISTADFISLHMPLTPATSKMFNDEAFF 270 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~--~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~ 270 (595)
+|||||+|.||+++|+.++..|++|.+||++. ..+.+.+.|.. ..+..+.+++||+|++|+|.. ....++ ++...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~-~~~~~~-~~l~~ 79 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIG-LLLPPS-EQLIP 79 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHHHH
Confidence 79999999999999999999999999999876 33445555642 222235789999999999943 344444 44556
Q ss_pred cCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe-cCCCCCC---CCCcccccCCcEEEcCCCCCCcHHHHHHHHHH
Q 046427 271 KMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD-VFTEEPP---AKDSKLVLHENVTVTPHLGASTTEAQEGVAIE 346 (595)
Q Consensus 271 ~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD-v~~~EP~---~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~ 346 (595)
.++++++++|++..+.-..+++.+.. . ++ .+.. .++.|.. .+..-||...++++||+-... .+
T Consensus 80 ~l~~~~ii~d~~Svk~~~~~~~~~~~-~-~~--v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~-~~-------- 146 (279)
T PRK07417 80 ALPPEAIVTDVGSVKAPIVEAWEKLH-P-RF--VGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTD-LN-------- 146 (279)
T ss_pred hCCCCcEEEeCcchHHHHHHHHHHhh-C-Cc--eeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCC-HH--------
Confidence 68999999999876643333332221 1 22 2222 1222211 122347888999999975432 22
Q ss_pred HHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHHHHH-----------HHHhcCCCCceEEEEEEeecCC
Q 046427 347 IAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLGGLA-----------VQLVAGGSGVKSVKVSYASARG 413 (595)
Q Consensus 347 ~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG~l~-----------~qL~~g~~~~k~v~i~~~Gs~a 413 (595)
..+.+..+++.-+.......|..|+..+..++ |++.....+..+. ..++++ +|+++++.+.+++.
T Consensus 147 ~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~~~~~~~~~~~~~~~~~~~--gfrd~tRia~~~p~ 224 (279)
T PRK07417 147 ALAIVEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAALIQTCGTEKDPSVLKLAQNLASS--GFADTSRVGGGNPE 224 (279)
T ss_pred HHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHHHHHHhhcccchhhHHhhhhccC--cccccccccCCChH
Confidence 23345555555555555667888888888887 7776655544442 246666 89999999999998
Q ss_pred CCCcccccchHHHHHhhcccccccccccccHHHHHhhCCc
Q 046427 414 PDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGL 453 (595)
Q Consensus 414 ~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~GI 453 (595)
+|.++...|+.-+...|+.+..+...++++++--++.++
T Consensus 225 -~w~~i~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l 263 (279)
T PRK07417 225 -LGVMMAEYNRAALLRSLASYRQSLDQLEELIEQENWSAL 263 (279)
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999987767787777766677776654444333
No 32
>PLN02494 adenosylhomocysteinase
Probab=99.57 E-value=6.4e-15 Score=159.56 Aligned_cols=120 Identities=23% Similarity=0.304 Sum_probs=106.8
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
..+.||+++|+|+|.||+.+|+++++||++|+++++++. ...+...|+..++++++++.+|+|+.+. .++++++.
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tT----Gt~~vI~~ 325 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTT----GNKDIIMV 325 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECC----CCccchHH
Confidence 458999999999999999999999999999999988763 3456677887778999999999999843 57899999
Q ss_pred HHHhcCCCceEEEeccC-CchhcHHHHHHH--HhcCCeeEEEEecCCCC
Q 046427 267 EAFFKMKKGVRIVNVAR-GGVVDEEALVRA--LDSGIISQAALDVFTEE 312 (595)
Q Consensus 267 ~~l~~mk~gailiN~ar-g~~vd~~aL~~a--L~~g~i~ga~lDv~~~E 312 (595)
+.|+.||+|++|+|+|| +..||+++|.++ ++.+.+. +++|+|+.|
T Consensus 326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 99999999999999999 678999999998 8999885 999999986
No 33
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.57 E-value=4.7e-14 Score=146.94 Aligned_cols=166 Identities=23% Similarity=0.343 Sum_probs=131.9
Q ss_pred hhcCCceEEEEcCC----------------CCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceEEeCCCC----
Q 046427 89 TKISLCDALIVRSG----------------TKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTA---- 148 (595)
Q Consensus 89 ~~i~~~d~li~~~~----------------~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~---- 148 (595)
+.+.++|+++.-.. ..++++.++.++ ++..+. .|.+.+++| +.|.++||.|.+.+..
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~-~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~ 127 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP-EHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVA 127 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcC-CCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhh
Confidence 35788999885311 124688999885 676444 599999988 8899999999998864
Q ss_pred --CchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-
Q 046427 149 --NTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA- 225 (595)
Q Consensus 149 --~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~- 225 (595)
|+.++||.++.+.+. + .+.++.|++++|+|+|.+|+.+++.|+++|++|.++|++.
T Consensus 128 ~~ns~~~aegav~~a~~--~-------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 128 ILNSIPTAEGAIMMAIE--H-------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred hhccHhHHHHHHHHHHH--h-------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 888999997765431 0 1246789999999999999999999999999999999986
Q ss_pred cHHHHHHcCCccc---CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccC
Q 046427 226 QADRARATGVGLV---SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 226 ~~~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
..+.+.+.|+..+ ++.+.++++|+|+.++|. .+++++.++.|++++++||++.
T Consensus 187 ~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 187 HLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred HHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence 3445566777644 467889999999999983 4678889999999999999994
No 34
>PLN02256 arogenate dehydrogenase
Probab=99.53 E-value=7.7e-15 Score=153.24 Aligned_cols=238 Identities=13% Similarity=0.094 Sum_probs=163.5
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-cCHHHhc-cccCEEEEeCCCChhccccccHH
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL-VSFEEAI-STADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~ell-~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
-++++|||||+|.||+++|+.++.+|++|++||+....+.+.+.|+.. .++++++ .++|+|++|+|. ..+..++.+-
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~l 112 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRSL 112 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHhh
Confidence 356799999999999999999999999999999876444555667654 3677876 479999999995 4677777554
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeEEEEecCCCCCCCCCcccccCCcEEEcCCC---CCCcHHHHHHH
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQAALDVFTEEPPAKDSKLVLHENVTVTPHL---GASTTEAQEGV 343 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi---~~~t~ea~~~~ 343 (595)
....++++++|+|++.++-...+++.+.+..+ ++.+. -=.++.| .....+...+++++|+. .....+
T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~-HPmaG~e---~~~~~~~~~~~~~~~~~i~~~~~~~~----- 183 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCT-HPMFGPE---SGKGGWAGLPFVYDKVRIGDEGEREA----- 183 (304)
T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEec-CCCCCCC---CCccccCCCeEEEecceecCCCCCHH-----
Confidence 35568999999999998776777777777554 23221 0011112 11234455556666643 122222
Q ss_pred HHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHHHHH---HHHhcCCCCceEEEEEEe----ecCCC
Q 046427 344 AIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLGGLA---VQLVAGGSGVKSVKVSYA----SARGP 414 (595)
Q Consensus 344 ~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG~l~---~qL~~g~~~~k~v~i~~~----Gs~a~ 414 (595)
..+.+.++++..+.+.....|..|+..++.++ ||+. |..|.... ..++++ +|++.+.... +++.
T Consensus 184 ---~~~~l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~l-a~~L~~~~~~~~~~~~~--gfrd~tria~r~~~~~p~- 256 (304)
T PLN02256 184 ---RCERFLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTV-GRILGKMELESTPINTK--GYETLLRLVENTSSDSFD- 256 (304)
T ss_pred ---HHHHHHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHH-HHHHHHcCCcccccccc--cHHHHHHHHHhhcCCCHH-
Confidence 33456667766667888889999999999888 8864 33333322 245566 7888777765 8898
Q ss_pred CCcccccchHHHHHhhcccccccccccccHH
Q 046427 415 DDLDTRLLRAMITKGIIEPISSVFVNLVNAD 445 (595)
Q Consensus 415 ~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~ 445 (595)
+|.+++..|+..+ ..++.+...-..+++++
T Consensus 257 lw~dI~~~N~~~~-~~i~~~~~~l~~~~~~l 286 (304)
T PLN02256 257 LYYGLFMYNPNAT-EELERLELAFDSVKKQL 286 (304)
T ss_pred HHHHHHHHChHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999998877 66766655444444443
No 35
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.53 E-value=2.2e-14 Score=147.69 Aligned_cols=225 Identities=23% Similarity=0.264 Sum_probs=164.4
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEE--EEECCCC-cHHHHHHcCCcc---cC-HHHhccccCEEEEeCCCChhccccc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNV--IAHDPYA-QADRARATGVGL---VS-FEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V--~~~d~~~-~~~~a~~~g~~~---~~-l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
-++|+|+|+|.||+++|+.++..|+.| +++|++. ....+.++|+.. .+ ..+.+..||+|++++|- ..|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence 368999999999999999999988866 5566654 344555677632 23 36788889999999995 4577777
Q ss_pred cHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeEEEEe-cCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHH
Q 046427 265 NDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQAALD-VFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEG 342 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga~lD-v~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~ 342 (595)
.+ ....+|+|++|+|++.-+--..+++.+.+.++ ++ .+.. -|++| +..+|+++..||+||.-...
T Consensus 82 ~~-l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~--vg~HPM~G~~---~~~~lf~~~~~vltp~~~~~------- 148 (279)
T COG0287 82 KE-LAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRF--VGGHPMFGPE---ADAGLFENAVVVLTPSEGTE------- 148 (279)
T ss_pred HH-hcccCCCCCEEEecccccHHHHHHHHHhccCCCee--EecCCCCCCc---ccccccCCCEEEEcCCCCCC-------
Confidence 44 33379999999999987776666666665443 23 2222 13332 46789999999999963322
Q ss_pred HHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHH---H------HHHHHhcCCCCceEEEEEEeec
Q 046427 343 VAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLG---G------LAVQLVAGGSGVKSVKVSYASA 411 (595)
Q Consensus 343 ~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG---~------l~~qL~~g~~~~k~v~i~~~Gs 411 (595)
.+..+.+.+++.+.+.+.....|..|+..+..++ ||+......+ . ++..++++ .|+++++.+.++
T Consensus 149 --~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as~--~frd~tRia~~~ 224 (279)
T COG0287 149 --KEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAALALANALAKLETEELLVLKLASG--GFRDITRIASSD 224 (279)
T ss_pred --HHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHhcccc--chhhHHHHHcCC
Confidence 3456788999998888889999999999999999 8775433333 2 23556677 899999999999
Q ss_pred CCCCCcccccchHHHHHhhccccc
Q 046427 412 RGPDDLDTRLLRAMITKGIIEPIS 435 (595)
Q Consensus 412 ~a~~~~~~~~~~~a~l~GlL~~~~ 435 (595)
+. +|.+.+..+...+...++.+.
T Consensus 225 P~-m~~dI~~~N~~~~l~~i~~~~ 247 (279)
T COG0287 225 PE-MYADIQLSNKEALLEAIERFA 247 (279)
T ss_pred hH-HHHHHHHhCcHHHHHHHHHHH
Confidence 98 999999999985444444433
No 36
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.53 E-value=2.6e-14 Score=149.64 Aligned_cols=247 Identities=21% Similarity=0.226 Sum_probs=165.7
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCC-cHHHHHHcCCc---ccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYA-QADRARATGVG---LVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~-~~~~a~~~g~~---~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
.++|+|||+|.||+.+|+.++..|. +|++||++. ..+.+.+.|+. ..++++.+++||+|++|+|.. .+..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence 4689999999999999999998874 899999976 34455566642 236788899999999999953 344443
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEE-ecCCCC---CCCCCcccccCCcEEEcCCCCCCcHHHHH
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAAL-DVFTEE---PPAKDSKLVLHENVTVTPHLGASTTEAQE 341 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~l-Dv~~~E---P~~~~~~L~~~~nvilTPHi~~~t~ea~~ 341 (595)
.+....++++.++++++..+.-..+++.+.+..+ +...+. =+++.| |-.....|+...++++||+-++. .++
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~-~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~-~~~-- 159 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEG-VHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTD-PAA-- 159 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCC-CeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCC-HHH--
Confidence 3344568999999999876543344444444333 111221 122222 11234578888999999975443 332
Q ss_pred HHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHHHH----------HHHHhcCCCCceEEEEEEe
Q 046427 342 GVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLGGL----------AVQLVAGGSGVKSVKVSYA 409 (595)
Q Consensus 342 ~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG~l----------~~qL~~g~~~~k~v~i~~~ 409 (595)
.+.+.++++.-+....+..+..|+..+..++ ||+.....++.. ...+.++ +|++.++...
T Consensus 160 ------~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~~~~~~~~~~~~~~~~~~~~~--gfrd~tRia~ 231 (307)
T PRK07502 160 ------VARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIVGTADDLERVTESEVIKYSAS--GFRDFTRIAA 231 (307)
T ss_pred ------HHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHHHHHhhhcccchHHHHHhccc--cccccccccc
Confidence 2345556655555666777888898888888 777544443322 2246666 8999999999
Q ss_pred ecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhhCCc
Q 046427 410 SARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGL 453 (595)
Q Consensus 410 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~GI 453 (595)
+++. +|.+....|+..+.-.|+.+..+...++++++--++..+
T Consensus 232 ~~~~-~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l 274 (307)
T PRK07502 232 SDPT-MWRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWGDGDAL 274 (307)
T ss_pred CChH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9998 999999999977666666666555555555544443333
No 37
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.49 E-value=8.8e-14 Score=149.62 Aligned_cols=121 Identities=26% Similarity=0.383 Sum_probs=105.9
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+..+.|++++|+|+|.||+.+|++++++|++|+++|.++ ....+...|+...+++++++.+|+|+.++. +.++++
T Consensus 190 ~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaTG----~~~vI~ 265 (406)
T TIGR00936 190 NLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATG----NKDVIR 265 (406)
T ss_pred CCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECCC----CHHHHH
Confidence 345899999999999999999999999999999997665 334456678877788999999999988654 688899
Q ss_pred HHHHhcCCCceEEEeccCCch-hcHHHHHHHHhcCCeeEEEEecCCC
Q 046427 266 DEAFFKMKKGVRIVNVARGGV-VDEEALVRALDSGIISQAALDVFTE 311 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~-vd~~aL~~aL~~g~i~ga~lDv~~~ 311 (595)
.+.|..||+|++|+|+||+.+ +|.++|.+++.+.+..+..+|+|.-
T Consensus 266 ~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 266 GEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 999999999999999999998 9999999998887777899999884
No 38
>COG1760 SdaA L-serine deaminase [Amino acid transport and metabolism]
Probab=99.48 E-value=6.9e-17 Score=161.06 Aligned_cols=197 Identities=18% Similarity=0.126 Sum_probs=174.8
Q ss_pred cchhHHHHHHHHHHHHHhcCCCC---ceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhhCCce
Q 046427 378 APFVTLAEKLGGLAVQLVAGGSG---VKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLR 454 (595)
Q Consensus 378 ~p~~~la~rlG~l~~qL~~g~~~---~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~GI~ 454 (595)
+.+..-+.|+|+.+++|++. . ++.+.+.++++++ .+++++.++.|...|.+ ++.+.+.++.+.+.++.++||.
T Consensus 51 s~~~aGa~rigr~A~~l~~~--~~~~~~~v~~~a~a~~e-ena~Gg~~~~Apt~Ga~-G~~P~vl~~~~~~~~a~~~~i~ 126 (262)
T COG1760 51 SSHTAGALRIGRRARALFGE--LKNVPDWVNIYAYASFE-ENAAGGGTVTAPTAGAL-GIIPAVLRIKESFEIAAEKGIK 126 (262)
T ss_pred cccCcccceechhHHHHHHH--HhhhhHHHHHHHHHhhH-hhccCCcEeeeccCccc-cCCcchHHHHHHhhhhhhhhhH
Confidence 45677788999999999987 6 8899999999998 99999999999999999 6666799999999999999999
Q ss_pred EEEEEeec-CCCCCCCceEEEEEeeeccccccccccCCceEEEEE-EEeCCeeEEEEEcceEEEeecCccEEEEEecCCC
Q 046427 455 VTEERIVL-DGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEG-RVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQP 532 (595)
Q Consensus 455 v~f~~~~~-~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~G-SvgGG~i~I~~Idgf~v~~~~~~~~Liv~~~D~p 532 (595)
..|..... +..|||++.+..-+ ++.....| |.++|.+.+++++|+.+++.+..+.+.+.|. +
T Consensus 127 ~fl~~a~aig~~~~nnAsIsgae--------------~gcq~evGsa~~maaa~l~el~Ggs~~q~~~a~~i~~~h~--l 190 (262)
T COG1760 127 IFLLTAGAIGALHPNNASISGAE--------------GGCQGEVGSAIGMGAAALTELNGGSPEQSGNAPEIAMEHN--L 190 (262)
T ss_pred hhhhhcccccccccCcceEEecc--------------CceEEEeehhhhhHHHHHHHHhCCChHHhccccHHHHhcC--C
Confidence 88866544 46899999885433 34455556 5568999999999999999999999999998 9
Q ss_pred CchhH-HHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEEe
Q 046427 533 GIIGK-VGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFLK 594 (595)
Q Consensus 533 G~I~~-I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i~ 594 (595)
|++.. |+.++....||++.|...|...+.++.|+++.|..+.+++++.+++++...+++|.+
T Consensus 191 GltcdpVaglV~vpcI~rnam~a~rai~aa~~am~~~~~~~~~DevI~tM~~~g~~m~~~y~e 253 (262)
T COG1760 191 GLTCDPVAGLVQVPCINRNAMGAVRAINGAKAAMAIEVDQRPLDEVIETMYETGKDMNVKYRE 253 (262)
T ss_pred CceehhhhchhhhhhhhHHHHHHHHHhhhhhhhheecCCCCChHHHHHHHHHhhhhcchhhee
Confidence 99999 999999999999999999999999999999999999999999999999998888764
No 39
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.48 E-value=7.8e-14 Score=144.43 Aligned_cols=93 Identities=25% Similarity=0.406 Sum_probs=82.3
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
..|+||||||||+|.||+++|++|++|||+|++||+.. +.+.+...|++..++++++++||+|++|+|+ ++++++++.
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~~ 90 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYKA 90 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHHH
Confidence 46999999999999999999999999999999997543 3445666788777999999999999999997 678999999
Q ss_pred HHHhcCCCceEEEec
Q 046427 267 EAFFKMKKGVRIVNV 281 (595)
Q Consensus 267 ~~l~~mk~gailiN~ 281 (595)
+.+..||+|++|+-.
T Consensus 91 eil~~MK~GaiL~f~ 105 (335)
T PRK13403 91 EVEENLREGQMLLFS 105 (335)
T ss_pred HHHhcCCCCCEEEEC
Confidence 999999999988764
No 40
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.47 E-value=8.6e-14 Score=143.51 Aligned_cols=233 Identities=16% Similarity=0.133 Sum_probs=150.4
Q ss_pred EEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCc-HHHHHHcCCc--ccCHHHhccccCEEEEeCCCChhccccccHHH
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQ-ADRARATGVG--LVSFEEAISTADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~-~~~a~~~g~~--~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~ 268 (595)
+|+|||+|.||+++|+.++..|. +|++||++.. .+.+.+.|+. ..+++++. +||+|++|+|.. .+..++. +.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~~-~l 78 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEILP-KL 78 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHHH-HH
Confidence 79999999999999999997774 8999998763 3445566653 33677765 499999999954 4555553 34
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEE----EEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHH
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQA----ALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVA 344 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga----~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~ 344 (595)
.. ++++++|++++.-+.--.+.+.+. ..+++.++ |...++ |..+...|++...++++|.-+. +.+.
T Consensus 79 ~~-l~~~~iv~d~gs~k~~i~~~~~~~-~~~~~v~~hPmaG~e~~G--p~~a~~~l~~g~~~il~~~~~~-~~~~----- 148 (275)
T PRK08507 79 LD-IKENTTIIDLGSTKAKIIESVPKH-IRKNFIAAHPMAGTENSG--PKAAIKGLYEGKVVVLCDVEKS-GEKH----- 148 (275)
T ss_pred hc-cCCCCEEEECccchHHHHHHHHHh-cCCCEEecCCcCcCchhh--HHhccHHHhCCCeEEEecCCCC-CHHH-----
Confidence 45 889999999876432222222222 11222221 111111 2123335777778889985432 2222
Q ss_pred HHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHHHHH---------HHHhcCCCCceEEEEEEeecCC
Q 046427 345 IEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLGGLA---------VQLVAGGSGVKSVKVSYASARG 413 (595)
Q Consensus 345 ~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG~l~---------~qL~~g~~~~k~v~i~~~Gs~a 413 (595)
.+.+..+++.-+.+.....|..|++.+..++ ||+ ++..++..+ ..+.++ +|++.++...+++.
T Consensus 149 ---~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~-~a~~l~~~~~~~~~~~~~~~~~~~--gfrd~tria~~~p~ 222 (275)
T PRK08507 149 ---QERAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPHI-ISFALANTVLKEEDERNIFDLAGG--GFRSMSRLAKSSPA 222 (275)
T ss_pred ---HHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcCChHHHHhhccc--chhhhhhcccCCHH
Confidence 2345555555455566667888898888888 884 333333322 355666 89999999999998
Q ss_pred CCCcccccchHHHHHhhcccccccccccccHHH
Q 046427 414 PDDLDTRLLRAMITKGIIEPISSVFVNLVNADF 446 (595)
Q Consensus 414 ~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~ 446 (595)
+|.++...|+..+...|+.+..+...+.++++
T Consensus 223 -l~~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~ 254 (275)
T PRK08507 223 -MWSDIFKQNKENVLEAIDEFIKELEQFKQLIE 254 (275)
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997666666666654445554443
No 41
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.42 E-value=2.9e-13 Score=148.31 Aligned_cols=232 Identities=18% Similarity=0.165 Sum_probs=162.6
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcH--HHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHH
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQA--DRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~ 268 (595)
++|+||| +|.||+++|+.++..|++|.+||++... +.+.+.|+... ++.+.+++||+|++|+|. ..+..++ .+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence 4799997 9999999999999999999999987632 34556676544 678899999999999995 4566666 345
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeEEEEecCCCCCCC-CCcccccCCcEEEcCCCCCCcHHHHHHHHHH
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQAALDVFTEEPPA-KDSKLVLHENVTVTPHLGASTTEAQEGVAIE 346 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~~EP~~-~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~ 346 (595)
...+++++++++++..+....+++.+.+..+ ++ .+ .-|.. +..+++....+++||+-+. +. .
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~--V~-----~HPmaGp~~~~~~g~~~il~p~~~~-~~--------~ 142 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEI--LP-----THPMFGPRTPSLKGQVVILTPTEKR-SN--------P 142 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEE--EE-----cCCCCCCCCcccCCCEEEEecCCCC-CH--------H
Confidence 5678999999999987766667777666543 22 11 12221 1236788899999996532 22 2
Q ss_pred HHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHH---HHHH---H---HHHHHHhcCCCCceEE----EEEEeec
Q 046427 347 IAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTL---AEKL---G---GLAVQLVAGGSGVKSV----KVSYASA 411 (595)
Q Consensus 347 ~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~l---a~rl---G---~l~~qL~~g~~~~k~v----~i~~~Gs 411 (595)
.++.+.++++..+.......|..|+..+..++ ||+.. +..+ | ....+++++ +|++. ++++.++
T Consensus 143 ~~~~v~~ll~~~G~~v~~~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~--~frd~~~~~tRIa~~~ 220 (437)
T PRK08655 143 WFDKVKNFLEKEGARVIVTSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESRKFASP--IYELMIDIIGRILGQN 220 (437)
T ss_pred HHHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcCh--hhHHHHHHHHHHhcCC
Confidence 33456666666566666677888888888777 77542 2222 2 223456666 79985 8999999
Q ss_pred CCCCCcccccchHHHHHhhcccccccccccccHHH
Q 046427 412 RGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADF 446 (595)
Q Consensus 412 ~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~ 446 (595)
+. +|.+++..|+. +...++.+..+-..+.++.+
T Consensus 221 p~-lw~dI~~~N~~-~~~~l~~~~~~l~~l~~~l~ 253 (437)
T PRK08655 221 PY-LYASIQMNNPQ-IPEIHETFIKECEELSELVK 253 (437)
T ss_pred HH-HHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 98 99999999984 55666666554445544443
No 42
>PLN02712 arogenate dehydrogenase
Probab=99.38 E-value=2.6e-13 Score=155.32 Aligned_cols=241 Identities=13% Similarity=0.104 Sum_probs=159.3
Q ss_pred ceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhcc-ccCEEEEeCCCChhcccc
Q 046427 186 VGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAIS-TADFISLHMPLTPATSKM 263 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~-~aD~V~l~~Plt~~t~~l 263 (595)
.|.++.+++|||||+|+||+.+|+.++.+|++|++||+....+.+.+.|+... ++++++. +||+|++|+| ...+..+
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~v 441 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKV 441 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHH
Confidence 46778999999999999999999999999999999998754345566777543 7888876 5999999999 4678888
Q ss_pred ccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCC-eeEEEEecCCCCCC----CCCcccccCCcEEEcCCCCCCcHH
Q 046427 264 FNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGI-ISQAALDVFTEEPP----AKDSKLVLHENVTVTPHLGASTTE 338 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~-i~ga~lDv~~~EP~----~~~~~L~~~~nvilTPHi~~~t~e 338 (595)
+.+.....||+|++++|++.++-...+.+.+.+..+. +.+ +-=.++.|-. ....-|++. .++.++ .+
T Consensus 442 i~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~-~HPm~G~e~~~~G~~~~~~lf~~-~~v~~~------~~ 513 (667)
T PLN02712 442 LKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILC-THPMFGPESGKNGWNNLAFVFDK-VRIGSD------DR 513 (667)
T ss_pred HHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEe-eCCCCCccccccchhhhhhhccC-cEeCCC------cc
Confidence 8766555799999999999998656666666665542 221 1111222210 011113332 121111 11
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHHHHH---HHHhcCCCCceEEE----EEEe
Q 046427 339 AQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLGGLA---VQLVAGGSGVKSVK----VSYA 409 (595)
Q Consensus 339 a~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG~l~---~qL~~g~~~~k~v~----i~~~ 409 (595)
. .+.++.+.+++...+.+.....|..|+..++.++ ||+. +..+..+. ..+.++ +++.+. +++.
T Consensus 514 ~-----~~~~~~l~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHll-a~~L~~~~~~~~~~~~~--gfr~l~~Li~Ria~ 585 (667)
T PLN02712 514 R-----VSRCDSFLDIFAREGCRMVEMSCAEHDWHAAGSQFITHTM-GRLLEKLGLESTPINTK--GYETLLNLVENTAG 585 (667)
T ss_pred h-----HHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHH-HHHHHHCCCcccccccH--HHHHHHHHHHhhcC
Confidence 1 2234455666666667778888899998888777 6642 23332111 122234 577766 8899
Q ss_pred ecCCCCCcccccchHHHHHhhcccccccccccccHH
Q 046427 410 SARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNAD 445 (595)
Q Consensus 410 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~ 445 (595)
+++. +|+++...|+.. ...|+.+...-..+++++
T Consensus 586 ~~p~-l~~dI~~~N~~a-~~~l~~f~~~l~~~~~~l 619 (667)
T PLN02712 586 DSFD-LYYGLFMYNVNA-MEQLERLDLAFESLKKQL 619 (667)
T ss_pred CCHH-HHHHHHHHChHH-HHHHHHHHHHHHHHHHHH
Confidence 9998 999999999888 556766655444444444
No 43
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.34 E-value=3.9e-12 Score=137.74 Aligned_cols=154 Identities=21% Similarity=0.298 Sum_probs=117.0
Q ss_pred Ecccccccc-ChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCccccc-ccceeeecCCEEEEEe
Q 046427 122 RAGVGIDNV-DLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN-KYVGVSLVGKTLAVMG 199 (595)
Q Consensus 122 ~~g~G~d~i-D~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktvGIIG 199 (595)
-+++|+... ......+.+++|.|++..++.+..|...+.-. +.|+.- ...+..+.|++++|+|
T Consensus 155 eTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~---------------s~~~ai~rat~~~l~Gk~VlViG 219 (425)
T PRK05476 155 ETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGE---------------SLLDGIKRATNVLIAGKVVVVAG 219 (425)
T ss_pred cchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHh---------------hhHHHHHHhccCCCCCCEEEEEC
Confidence 367888775 23334467899999999999886554333222 223210 0113458999999999
Q ss_pred CChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEE
Q 046427 200 FGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRI 278 (595)
Q Consensus 200 lG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gail 278 (595)
+|.||+.+|++++++|++|+++|+.+. ...+...|++..+++++++.+|+|+.++ .+.++|+.+.|..||+|+++
T Consensus 220 ~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~Gail 295 (425)
T PRK05476 220 YGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDGAIL 295 (425)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCCCEE
Confidence 999999999999999999999998763 3344556877778999999999999876 35778999999999999999
Q ss_pred EeccCCch-hcHHHHHH
Q 046427 279 VNVARGGV-VDEEALVR 294 (595)
Q Consensus 279 iN~arg~~-vd~~aL~~ 294 (595)
+|+|+... +|.++|.+
T Consensus 296 iNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 296 ANIGHFDNEIDVAALEE 312 (425)
T ss_pred EEcCCCCCccChHHHhh
Confidence 99999776 56776654
No 44
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.30 E-value=6.6e-12 Score=119.58 Aligned_cols=114 Identities=20% Similarity=0.298 Sum_probs=88.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccH-HHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFND-EAF 269 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~-~~l 269 (595)
++|||||+|.||+.+|++|...|++|.+||++.. .+...+.|+..+ ++.|++++||+|++|+|..++++.++.. ..+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 5899999999999999999999999999998763 345556677654 8999999999999999987888777632 257
Q ss_pred hcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEec
Q 046427 270 FKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDV 308 (595)
Q Consensus 270 ~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv 308 (595)
..+++|.++||++....-....+.+.+.+..+ ..+|.
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~--~~vda 118 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGV--RYVDA 118 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTE--EEEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccc--eeeee
Confidence 78999999999999999888999999877665 45553
No 45
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.29 E-value=5.7e-12 Score=135.55 Aligned_cols=255 Identities=12% Similarity=0.061 Sum_probs=163.8
Q ss_pred hHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcHHH
Q 046427 151 IAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQADR 229 (595)
Q Consensus 151 ~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~ 229 (595)
...++..+-.++..+|..... .|-+ ......++|+||| +|.||+++|+.++..|+.|.+||+...
T Consensus 68 ~~~~~~i~~~i~~~s~~~q~~-------~~~~----~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--- 133 (374)
T PRK11199 68 PDLIEDVLRRVMRESYSSEND-------KGFK----TLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--- 133 (374)
T ss_pred HHHHHHHHHHHHHHHHHHhHH-------hccc----ccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc---
Confidence 334455566666666643321 1211 1122458999999 999999999999999999999997421
Q ss_pred HHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe-c
Q 046427 230 ARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD-V 308 (595)
Q Consensus 230 a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD-v 308 (595)
.+.++++++||+|++|+|... +..++.. +..+++|++|++++..+....+++.+.+. +.+ .+.. .
T Consensus 134 --------~~~~~~~~~aDlVilavP~~~-~~~~~~~--l~~l~~~~iv~Dv~SvK~~~~~~~~~~~~-~~f--vg~HPm 199 (374)
T PRK11199 134 --------DRAEDILADAGMVIVSVPIHL-TEEVIAR--LPPLPEDCILVDLTSVKNAPLQAMLAAHS-GPV--LGLHPM 199 (374)
T ss_pred --------hhHHHHHhcCCEEEEeCcHHH-HHHHHHH--HhCCCCCcEEEECCCccHHHHHHHHHhCC-CCE--EeeCCC
Confidence 246788899999999999654 5666632 44489999999998876544555555443 232 2222 2
Q ss_pred CCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHH
Q 046427 309 FTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEK 386 (595)
Q Consensus 309 ~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~r 386 (595)
|+.| ...+....++++|+ ...++ .+.+.++++.-+.......|..|+..+..++ ||+.....
T Consensus 200 ~G~~-----~~~~~~~~vv~~~~---~~~~~--------~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al 263 (374)
T PRK11199 200 FGPD-----VGSLAKQVVVVCDG---RQPEA--------YQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAY 263 (374)
T ss_pred CCCC-----CcccCCCEEEEcCC---CCchH--------HHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 12345566778774 22222 2334455554456667778889999988888 66543322
Q ss_pred HHHHH---------HHHhcCCCCceE----EEEEEeecCCCCCcccccchHHHHHhhcccccccccccccHHHHHhhCCc
Q 046427 387 LGGLA---------VQLVAGGSGVKS----VKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGL 453 (595)
Q Consensus 387 lG~l~---------~qL~~g~~~~k~----v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~~iA~e~GI 453 (595)
...++ ..+.++ .+++ +++++.+++. +|.+++..|+..+ ..|+.+..+-..+.++.+--++..+
T Consensus 264 ~~~l~~~~~~~~~~~~~~~~--~fr~~la~~tRia~~~p~-lw~dI~~~N~~~~-~~l~~~~~~l~~l~~~l~~~d~~~l 339 (374)
T PRK11199 264 GLHLAKENVDLEQLLALSSP--IYRLELAMVGRLFAQDPQ-LYADIIMSSPENL-ALIKRYYQRFGEALELLEQGDKQAF 339 (374)
T ss_pred HHHHHHcCCCHHHHHHhcCh--HHHHHHHHHHHHHcCCHH-HHHHHHHhChhHH-HHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 22221 123444 6888 8999999998 9999999998877 7776666655566666554444433
No 46
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.26 E-value=2.7e-11 Score=114.16 Aligned_cols=104 Identities=32% Similarity=0.501 Sum_probs=77.1
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
...+.||++.|+|||.+|+.+|+.|+++|.+|++++.++ ..-+|...|++..+++++++++|+++.++- ..+++.
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG----~~~vi~ 93 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATG----NKDVIT 93 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCC----CccccC
Confidence 457999999999999999999999999999999999877 445677889998899999999999998875 577889
Q ss_pred HHHHhcCCCceEEEeccCCch-hcHHHHHH
Q 046427 266 DEAFFKMKKGVRIVNVARGGV-VDEEALVR 294 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~-vd~~aL~~ 294 (595)
.+.|.+||+|+++.|++.-.. +|.+.|.+
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 999999999999999986443 24444433
No 47
>PLN02712 arogenate dehydrogenase
Probab=99.25 E-value=1e-11 Score=142.22 Aligned_cols=243 Identities=14% Similarity=0.124 Sum_probs=157.3
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhc-cccCEEEEeCCCChhccccccHHH
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAI-STADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell-~~aD~V~l~~Plt~~t~~li~~~~ 268 (595)
+-++|||||+|+||+.+|+.++.+|++|++||++.....+.+.|+... ++++++ .+||+|++|+|. ..+..++....
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l~ 129 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSLP 129 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhhh
Confidence 345899999999999999999999999999998765555667787543 688866 569999999995 56888886654
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe-cCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHH
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD-VFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEI 347 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD-v~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~ 347 (595)
+..|+++++|+|+++-+..-.+++.+.+..+.- -.+.. .|+.|. ..+. |..-.++++|.+.+...+ ....
T Consensus 130 ~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~-~v~~HPMaG~e~--~~~g-~~~~~~~~~~~~~~~~~~-----~~~~ 200 (667)
T PLN02712 130 LQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFD-IICSHPMFGPQS--AKHG-WDGLRFVYEKVRIGNEEL-----RVSR 200 (667)
T ss_pred hhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCe-EEeeCCcCCCcc--ccch-hccCcEEEeeccCCCccc-----cHHH
Confidence 566999999999987665444555666654421 12221 233332 1111 233347777755322111 1233
Q ss_pred HHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHHHHHHHH--hcCC---CCceEEEEEEeecCCCCCcccc
Q 046427 348 AEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLGGLAVQL--VAGG---SGVKSVKVSYASARGPDDLDTR 420 (595)
Q Consensus 348 ~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG~l~~qL--~~g~---~~~k~v~i~~~Gs~a~~~~~~~ 420 (595)
++.+.++++..+.+.....|..|+..++.++ ||+ +|..+..+.-.. ...+ ..++-+++++.+++. +|+++.
T Consensus 201 ~~~l~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~-la~~L~~~~~~~~~~~~~~~~~~l~l~~Ria~~~p~-L~~dI~ 278 (667)
T PLN02712 201 CKSFLEVFEREGCKMVEMSCTEHDKYAAESQFITHT-VGRVLEMLKLESTPINTKGYESLLDLVENTCGDSFD-LYYGLF 278 (667)
T ss_pred HHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHH-HHHHHHHhcccccccCCccHHHHHHHHHHHhcCCHH-HHHHHH
Confidence 4455666666667778888999999999888 775 333333221000 0000 001123566788887 999999
Q ss_pred cchHHHHHhhcccccccccccccHHH
Q 046427 421 LLRAMITKGIIEPISSVFVNLVNADF 446 (595)
Q Consensus 421 ~~~~a~l~GlL~~~~~~~vn~~nA~~ 446 (595)
..|+.++ ..|+.+..+-..+++++.
T Consensus 279 ~~N~~~~-~~l~~~~~~l~~~~~~l~ 303 (667)
T PLN02712 279 MYNKNSL-EMLERLDLAFEALRKQLF 303 (667)
T ss_pred HhCHHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999544 567776665566666654
No 48
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.24 E-value=2.9e-11 Score=124.21 Aligned_cols=119 Identities=22% Similarity=0.269 Sum_probs=102.2
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc--HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhcccccc--HH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ--ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN--DE 267 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~--~~ 267 (595)
.+|||||||.||..+|++|...|+.|.+||+.+. .+...+.|.... +..|+.++||+|++|+|..++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 4799999999999999999999999999999873 344556687655 788999999999999999999999885 56
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe--cCCCCC
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD--VFTEEP 313 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD--v~~~EP 313 (595)
.++.||+|.++||+++........+.+++++..+ -.+| |.+..+
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~--~~lDAPVsGg~~ 126 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGL--EFLDAPVSGGVP 126 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCC--cEEecCccCCch
Confidence 8889999999999999999999999999999877 4455 455444
No 49
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.23 E-value=2.7e-11 Score=141.33 Aligned_cols=216 Identities=21% Similarity=0.191 Sum_probs=147.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCc-HHHHHHcCCc---ccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQ-ADRARATGVG---LVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~-~~~a~~~g~~---~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
++|+|||+|.||+++|+.++..| .+|++||++.. .+.+.+.|+. ..++++++++||+|++|+|.. ....++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~- 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVLA- 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHHH-
Confidence 68999999999999999999888 58999998763 3445566763 236888899999999999953 4555543
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCC---------CCCcccccCCcEEEcCCCCCCcH
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPP---------AKDSKLVLHENVTVTPHLGASTT 337 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~---------~~~~~L~~~~nvilTPHi~~~t~ 337 (595)
+....++++++++|++..+....+.+.+.+....+ .+..+-|. .++..||...+++++|+-... .
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~-~ 155 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETD-P 155 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCC-H
Confidence 33345788999999998664445555555543222 11222221 234578899999999975433 3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chh---HHHHHHH-----HHHHHHhcCCCCceEEEEE
Q 046427 338 EAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFV---TLAEKLG-----GLAVQLVAGGSGVKSVKVS 407 (595)
Q Consensus 338 ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~---~la~rlG-----~l~~qL~~g~~~~k~v~i~ 407 (595)
+. .+.+.++++.-+....+..+..++..+...+ ||+ .+++.+. ..+..++++ .|++.++.
T Consensus 156 ~~--------~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~~~~~~~a~~--~f~~~tRi 225 (735)
T PRK14806 156 AA--------LARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLANREDNLDIFRYAAG--GFRDFTRI 225 (735)
T ss_pred HH--------HHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHhhcCChhHHHhhhcc--chhccccc
Confidence 22 2344555555454455556777787777666 774 2333332 234577777 89999999
Q ss_pred EeecCCCCCcccccchHHHH
Q 046427 408 YASARGPDDLDTRLLRAMIT 427 (595)
Q Consensus 408 ~~Gs~a~~~~~~~~~~~a~l 427 (595)
+.+++. +|.+...+++..+
T Consensus 226 a~~~p~-~~~di~~~n~~~~ 244 (735)
T PRK14806 226 AASDPV-MWHDIFLANKEAV 244 (735)
T ss_pred ccCCHH-HHHHHHHHhHHHH
Confidence 999998 8999988887654
No 50
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.17 E-value=1e-10 Score=121.82 Aligned_cols=121 Identities=16% Similarity=0.243 Sum_probs=95.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhcccccc--HHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN--DEA 268 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~--~~~ 268 (595)
++|||||+|.||+.+|+.+...|++|++||++.. .+...+.|+..+ ++++++++||+|++|+|....++.++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 5799999999999999999999999999999763 344455666544 789999999999999998887777763 235
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCC
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEP 313 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP 313 (595)
+..+++|.++||+++......+++.+.+.+..+...---|+..+|
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 677899999999999998888888888877654322223454443
No 51
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.16 E-value=1.1e-10 Score=121.18 Aligned_cols=108 Identities=17% Similarity=0.243 Sum_probs=89.9
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccc-c-HHHH
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMF-N-DEAF 269 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li-~-~~~l 269 (595)
+|||||+|.||+.+|+++...|++|.+||++.. .+.+.+.|... .+..+++++||+|++|+|..+.++.++ + ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 489999999999999999999999999999863 34445566643 478899999999999999887777765 3 2356
Q ss_pred hcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 270 FKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 270 ~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
..+++|+++||+++....+.+++.+.+++..+
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~ 112 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGI 112 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 77899999999999998888899999987644
No 52
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.12 E-value=2.7e-10 Score=118.89 Aligned_cols=113 Identities=16% Similarity=0.251 Sum_probs=93.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccH--HH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFND--EA 268 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~--~~ 268 (595)
++|||||+|.||..+|+.+...|++|.+||++.. .+...+.|... .+..+++++||+|++|+|....++.++.. ..
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 3799999999999999999999999999999763 34444556643 47889999999999999987767777642 35
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD 307 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD 307 (595)
+..+++|.++||++++.....+.+.+.+.+..+. .+|
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~ld 118 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMD 118 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 6678999999999999999999999999887663 455
No 53
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.12 E-value=8.5e-12 Score=127.65 Aligned_cols=224 Identities=19% Similarity=0.124 Sum_probs=148.6
Q ss_pred HHHHHhcCC--CEEEEECCCC-cHHHHHHcCCcc--cCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEec
Q 046427 207 VARRAKGLG--MNVIAHDPYA-QADRARATGVGL--VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 207 vA~~l~~~G--~~V~~~d~~~-~~~~a~~~g~~~--~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ 281 (595)
+|+.|+..| .+|++||++. ....+.+.|+.. .+-.+.+++||+|++|+|. ..+..++. +....+++|++++|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~-~~~~~~l~-~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPV-SAIEDVLE-EIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-H-HHHHHHHH-HHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCH-HHHHHHHH-HhhhhcCCCcEEEEe
Confidence 467777666 8999999987 455666788743 2325789999999999995 44666663 344568999999999
Q ss_pred cCCchhcHHHHHHHHhcC-CeeE----EEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 046427 282 ARGGVVDEEALVRALDSG-IISQ----AALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALK 356 (595)
Q Consensus 282 arg~~vd~~aL~~aL~~g-~i~g----a~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~ 356 (595)
+.-+.--.+++.+.+..+ ++.| +|-+..+.+ .++..||+..++++||+-... .+..+.+.++++
T Consensus 79 ~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~--~a~~~lf~g~~~il~p~~~~~---------~~~~~~~~~l~~ 147 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPE--AADADLFEGRNWILCPGEDTD---------PEALELVEELWE 147 (258)
T ss_dssp -S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGG--G-TTTTTTTSEEEEEECTTS----------HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCcccceeecCCCCCCccccch--hhcccccCCCeEEEeCCCCCh---------HHHHHHHHHHHH
Confidence 988776677777777622 3322 333333333 457789999999999986422 234456777777
Q ss_pred CCCCCccccCCCCChhhhhccc--chhHHHHHHH---------HHHHHHhcCCCCceEEEEEEeecCCCCCcccccchHH
Q 046427 357 GELAATAVNAPMVPAEVISELA--PFVTLAEKLG---------GLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAM 425 (595)
Q Consensus 357 g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG---------~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a 425 (595)
..+.+.....|..|+..++.++ ||+....... ....+++++ .|++.++.+.+++. +|.+++..|+.
T Consensus 148 ~~Ga~~~~~~~eeHD~~~A~vshlpH~~a~al~~~~~~~~~~~~~~~~~a~~--~frd~tRia~~~p~-l~~~I~~~N~~ 224 (258)
T PF02153_consen 148 ALGARVVEMDAEEHDRIMAYVSHLPHLLASALANTLAELSSDDPDILRLAGG--GFRDMTRIASSDPE-LWADIFLSNPE 224 (258)
T ss_dssp HCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGTH--HHHHHHGGGGS-HH-HHHHHHHHTHH
T ss_pred HCCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHhhcch--hHHhhcccccCChH-HHHHHHHHCHH
Confidence 6667778888999999999998 8876555444 123456666 79999988888887 89999999998
Q ss_pred HHHhhcccccccccccccHHH
Q 046427 426 ITKGIIEPISSVFVNLVNADF 446 (595)
Q Consensus 426 ~l~GlL~~~~~~~vn~~nA~~ 446 (595)
.+...|+.+..+..++.++++
T Consensus 225 ~~~~~l~~~~~~L~~l~~~l~ 245 (258)
T PF02153_consen 225 NLLEALDEFIKELNELREALE 245 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666667666665555555544
No 54
>PF03315 SDH_beta: Serine dehydratase beta chain; InterPro: IPR005131 L-serine dehydratase is found as a heterodimer of alpha and beta chain or as a fusion of the two chains in a single protein. This enzyme catalyses the deamination of serine to form pyruvate and is part of the gluconeogenesis pathway.; GO: 0003941 L-serine ammonia-lyase activity, 0051539 4 iron, 4 sulfur cluster binding, 0006094 gluconeogenesis; PDB: 2IQQ_A 2IAF_A.
Probab=99.09 E-value=2.3e-11 Score=114.95 Aligned_cols=120 Identities=10% Similarity=-0.020 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHHHhcCC---CCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccH------------
Q 046427 380 FVTLAEKLGGLAVQLVAGG---SGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNA------------ 444 (595)
Q Consensus 380 ~~~la~rlG~l~~qL~~g~---~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA------------ 444 (595)
|-.=..|+|+.+++++.+. ..+.+|++.++||++ .|+++|++|+|++.|||+. ..+++++...
T Consensus 16 HT~Gpmra~~~f~~~l~~~~~l~~~~~v~v~l~GSla-~Tg~GHgTD~Av~~GLlG~-~p~~~~~~~~~~~~~~~~~~~~ 93 (157)
T PF03315_consen 16 HTVGPMRAARRFRQLLGEQGLLPQVARVRVDLYGSLA-ATGKGHGTDRAVLAGLLGE-DPEDVDPDSIPERLERIREENR 93 (157)
T ss_dssp TTHHHHHHHHHHHHHHHHTT-TTT--EEEEEEEHHHH-HT-TTSSHHHHHHHHCTT---TTTS-GGGHHHHHHHHHHHTE
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeechhH-HhCCCcccchhheeccccc-CCcccchhhhHHHHHHhhcCCE
Confidence 4455568888888888651 147899999999999 9999999999999999955 5568888832
Q ss_pred HHHHhhCCce------EEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEE-EEeCCeeEEEEEcc
Q 046427 445 DFIAKQRGLR------VTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEG-RVKDGKPHLTKVGS 512 (595)
Q Consensus 445 ~~iA~e~GI~------v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~G-SvgGG~i~I~~Idg 512 (595)
+.++.++.|. +.|...+..+.|||+..+...+.. ++..++..+ |||||.|++.++||
T Consensus 94 L~l~~~~~i~f~~~~dI~f~~~~~~~~HPNtm~~~a~d~~-----------g~~~~~~t~ySIGGGfI~~~~~~~ 157 (157)
T PF03315_consen 94 LRLAGEREIPFDPERDIIFHPEEFLPFHPNTMRFEAYDAD-----------GGELLEETYYSIGGGFIVIEEENG 157 (157)
T ss_dssp EEETTTEEEE--HHHHEEEETT---SS-SSEEEEEEE-TT-----------S-EEEEEEEEEETTTEEEETTTT-
T ss_pred EEECCCcccccccCCCeEEEeccCCCCCCCEEEEEEEeCC-----------CCEEEEEEEEEeCCeEEEEeeecC
Confidence 2222223222 223333333589999998887542 456778888 99999998876654
No 55
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.09 E-value=5.1e-10 Score=116.93 Aligned_cols=111 Identities=23% Similarity=0.319 Sum_probs=92.6
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccc---cCEEEEeCCCChhccccccHHH
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAIST---ADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~---aD~V~l~~Plt~~t~~li~~~~ 268 (595)
+|||||+|+||+.+|+++...|++|++||++.. .+...+.|+... ++++++++ +|+|++|+|..+.++.+++ ..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-DL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-HH
Confidence 699999999999999999999999999999763 344455676544 78898876 6999999998777888874 56
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD 307 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD 307 (595)
+..+++|.++||+++....+..++.+.+.+..+ ..+|
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~--~~vd 117 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGI--HYVD 117 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCC--eEEe
Confidence 677899999999999999999999999887665 3466
No 56
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.06 E-value=3.3e-10 Score=119.03 Aligned_cols=95 Identities=24% Similarity=0.402 Sum_probs=79.5
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC--cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA--QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
..|+||+|||||+|+||+++|+.|+.+|++|+++++.. ....+.+.|+...+.++++++||+|++++|.+.. ..+++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~~ 91 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVYE 91 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHHH
Confidence 46899999999999999999999999999999887653 3445666788777999999999999999997654 77777
Q ss_pred HHHHhcCCCceEEEeccCC
Q 046427 266 DEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg 284 (595)
++.+..|++|++| -.+.|
T Consensus 92 ~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 92 EEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHhcCCCCCEE-EECCC
Confidence 7788889999988 44455
No 57
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.04 E-value=7.5e-10 Score=119.79 Aligned_cols=104 Identities=28% Similarity=0.437 Sum_probs=89.4
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+..+.|++++|+|+|.||+.+|+.++++|++|+++|+++ ....+...|+..++++++++.+|+|+.|+. +.++++
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG----~~~~i~ 272 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTG----NKDIIT 272 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCC----CHHHHH
Confidence 456899999999999999999999999999999998876 456778889877788899999999998764 466788
Q ss_pred HHHHhcCCCceEEEeccCCch-hcHHHHHH
Q 046427 266 DEAFFKMKKGVRIVNVARGGV-VDEEALVR 294 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~-vd~~aL~~ 294 (595)
...+..||+|++++|+|+..+ +|..+|..
T Consensus 273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 888999999999999999875 66666654
No 58
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.00 E-value=2e-09 Score=112.64 Aligned_cols=112 Identities=21% Similarity=0.275 Sum_probs=92.9
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccc---cCEEEEeCCCChhccccccHHH
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAIST---ADFISLHMPLTPATSKMFNDEA 268 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~---aD~V~l~~Plt~~t~~li~~~~ 268 (595)
+|||||+|.||+.+|+++...|.+|.+||++.. .+.+.+.|+... +++++++. +|+|++|+|..+.+..+++ ..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~-~l 80 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID-EL 80 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH-HH
Confidence 799999999999999999999999999999863 344556677654 78888876 6999999998767777773 56
Q ss_pred HhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEec
Q 046427 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDV 308 (595)
Q Consensus 269 l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv 308 (595)
+..+++|.++||++++.......+.+.+++..+ ..+|.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~--~~~da 118 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGI--HFVDV 118 (301)
T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCC--EEEeC
Confidence 677999999999999999888888899888776 34563
No 59
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.97 E-value=2.3e-09 Score=111.66 Aligned_cols=112 Identities=20% Similarity=0.216 Sum_probs=90.9
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccH--HHHh
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFND--EAFF 270 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~--~~l~ 270 (595)
+|||||+|+||+.+|+++...|++|.+||+....+...+.|... .+..+++++||+|++|+|..++.+.++.. ..+.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence 69999999999999999999999999999876444445567654 37889999999999999987777777632 2466
Q ss_pred cCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe
Q 046427 271 KMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD 307 (595)
Q Consensus 271 ~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD 307 (595)
.+++|.++||++....-....+.+.+.+..+ ..+|
T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~--~~vd 116 (292)
T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGG--DYLD 116 (292)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCC--CEEE
Confidence 7899999999999988888888888877644 3455
No 60
>PRK15040 L-serine dehydratase TdcG; Provisional
Probab=98.96 E-value=3.2e-09 Score=114.52 Aligned_cols=150 Identities=13% Similarity=0.046 Sum_probs=102.5
Q ss_pred hhHHHHHHHHH-HHHHhcCC--CCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccH---HHHHhhC--
Q 046427 380 FVTLAEKLGGL-AVQLVAGG--SGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNA---DFIAKQR-- 451 (595)
Q Consensus 380 ~~~la~rlG~l-~~qL~~g~--~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA---~~iA~e~-- 451 (595)
|-.=+.|+|+. +++|.... ..+++++++++|||+ .|+++|++|+|++.||| ++..+++++.++ +++++++
T Consensus 18 HTvGPmraa~~F~~~L~~~~~l~~~~~v~i~LyGSLA-~TGkGHgTD~Avl~GLl-G~~Pd~~~~~~~~~~~~~~~~~~~ 95 (454)
T PRK15040 18 HTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLS-LTGKGHATDVAIIMGLA-GNSPQDVVIDEIPAFIELVTRSGR 95 (454)
T ss_pred HHHHHHHHHHHHHHHHhhccccCCccEEEEEEEchhh-hcCCCccccHHHHHhhc-cCCcccCChhhhHHHHHHHHHcCc
Confidence 44445677765 66665510 168999999999999 99999999999999999 556679999998 8888887
Q ss_pred -----Cc---------eEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEE-EEeCCeeEEEEEcceEEE
Q 046427 452 -----GL---------RVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEG-RVKDGKPHLTKVGSFGVD 516 (595)
Q Consensus 452 -----GI---------~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~G-SvgGG~i~I~~Idgf~v~ 516 (595)
|+ ++.|...++ +.|||+..+...+. ++..++..+ |||||.|++-+ ++.-+
T Consensus 96 l~l~~G~~~i~f~~~~di~f~~~~l-p~HPN~m~~~a~~~------------~~~~~e~~~ySIGGGfI~~~~--~~~~~ 160 (454)
T PRK15040 96 LPVASGAHIVDFPVAKNIIFHPEML-PRHENGMRITAWKG------------QEELLSKTYYSVGGGFIVEEE--HFGLS 160 (454)
T ss_pred cccCCCCccccCCCCCceEECCCCC-CCCCCeeEEEEEcC------------CCcEEEEEEEEcCCceeeecc--ccccc
Confidence 77 788865544 57999999887653 223446677 88899887542 11110
Q ss_pred eecCccEEEEEecCCC---CchhHHHhhhhcCCccccceEe
Q 046427 517 VSLEGSIILCRQVDQP---GIIGKVGSLLGDNNVNVNFMSV 554 (595)
Q Consensus 517 ~~~~~~~Liv~~~D~p---G~I~~I~~~L~~~~INIa~m~v 554 (595)
. .. ..+.| .-...+...-.+++++|..+.+
T Consensus 161 ~-~~-------~~~~py~f~s~~ell~~c~~~~~~i~e~v~ 193 (454)
T PRK15040 161 H-DV-------ETSVPYDFHSAGELLKMCDYNGLSISGLMM 193 (454)
T ss_pred c-CC-------CCCCCcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 0 00 11222 2334455556677888887655
No 61
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=98.94 E-value=3.7e-09 Score=86.20 Aligned_cols=73 Identities=38% Similarity=0.696 Sum_probs=67.7
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEEeC
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFLKL 595 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i~~ 595 (595)
++++.++|+||.+++|+++|+++|+||.++.+.+...++.+.+++.+|.+.+++++++|++.++|.+++++++
T Consensus 1 ~l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~l~~~~~v~~v~~~~~ 73 (73)
T cd04902 1 MLVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELRALPGILSAKVVEL 73 (73)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCCCHHHHHHHHcCCCccEEEEEeC
Confidence 3678999999999999999999999999999988767789999999999988899999999999999999875
No 62
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.91 E-value=5.1e-09 Score=115.84 Aligned_cols=120 Identities=11% Similarity=0.093 Sum_probs=97.9
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH----cCCc----ccCHHHhccc---cCEEEEeCCCChhcc
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA----TGVG----LVSFEEAIST---ADFISLHMPLTPATS 261 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~----~g~~----~~~l~ell~~---aD~V~l~~Plt~~t~ 261 (595)
+|||||||.||+.+|+++...|++|.+||+.... +...+ .|.. ..+++|+.+. +|+|++|+|..+.+.
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 6999999999999999999999999999997632 22222 1532 3378888876 999999999998888
Q ss_pred ccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPP 314 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~ 314 (595)
.++ ...+..|++|.++||++....-+...+.+.+++..+.....=|++.++.
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~g 139 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEG 139 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHH
Confidence 888 4578889999999999999999999999999888775555556777653
No 63
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.90 E-value=2.7e-08 Score=103.37 Aligned_cols=174 Identities=19% Similarity=0.232 Sum_probs=113.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHH-------------------------cCCc-ccCHHHhcc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARA-------------------------TGVG-LVSFEEAIS 245 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~-------------------------~g~~-~~~l~ell~ 245 (595)
++|+|||.|.||.++|..+...|.+|+.||++.. .+.+.+ .++. ..++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5899999999999999999999999999998752 121111 1111 236888999
Q ss_pred ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeEEEEecCCCCCCCCCcccccCC
Q 046427 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQAALDVFTEEPPAKDSKLVLHE 324 (595)
Q Consensus 246 ~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~~EP~~~~~~L~~~~ 324 (595)
.||+|+.|+|...+.+.-+-++....++++++|+..+++- ....+.+.+... ++ .+++-| +|.+.++
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~~r~--vg~Hf~--------~p~~~~~ 151 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRPEKF--LALHFA--------NEIWKNN 151 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCcccE--EEEcCC--------CCCCcCC
Confidence 9999999999665555444445556688899885444433 334556655432 34 444322 2344668
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 325 NVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 325 nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
.+.++|+-..+ .++.+.+.++++.-+...++..+..+....+.+. +++..|-+|
T Consensus 152 lvevv~~~~t~---------~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l 206 (287)
T PRK08293 152 TAEIMGHPGTD---------PEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALAL 206 (287)
T ss_pred eEEEeCCCCCC---------HHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHH
Confidence 88888875543 3445566666665555555555567777777665 666666555
No 64
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.85 E-value=4.3e-08 Score=102.16 Aligned_cols=108 Identities=23% Similarity=0.224 Sum_probs=78.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HH-----------HHHcC-------------CcccCHHHhcccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DR-----------ARATG-------------VGLVSFEEAISTA 247 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g-------------~~~~~l~ell~~a 247 (595)
++|||||+|.||..+|+.+...|++|++||++... +. ..+.| ....+-.+.+++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 68999999999999999999999999999987632 21 11112 1222333568999
Q ss_pred CEEEEeCCCChhccccccHHHHhcCCCceEEE-eccCCchhcHHHHHHHHhc-CCeeE
Q 046427 248 DFISLHMPLTPATSKMFNDEAFFKMKKGVRIV-NVARGGVVDEEALVRALDS-GIISQ 303 (595)
Q Consensus 248 D~V~l~~Plt~~t~~li~~~~l~~mk~gaili-N~arg~~vd~~aL~~aL~~-g~i~g 303 (595)
|+|+.|+|..++.+..+-.+....++++++|+ |+|.-. ...+.+.+.. .++.|
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~~~r~~g 139 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQRPQQVIG 139 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCCCcceEE
Confidence 99999999989888887776667789999886 787654 3445555543 34433
No 65
>PRK15023 L-serine deaminase; Provisional
Probab=98.85 E-value=8.8e-09 Score=111.14 Aligned_cols=149 Identities=13% Similarity=-0.011 Sum_probs=98.7
Q ss_pred hhHHHHHHHHH-HHHHhcC--CCCceEEEEEEeecCCCCCcccccchHHHHHhhccccccccc------------ccccH
Q 046427 380 FVTLAEKLGGL-AVQLVAG--GSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFV------------NLVNA 444 (595)
Q Consensus 380 ~~~la~rlG~l-~~qL~~g--~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~v------------n~~nA 444 (595)
|-.=+.|+|+. +++|... ...+++++++++|||+ .|+++|++|+|++.|||+. ..+++ +..++
T Consensus 18 HTvGPmraa~~F~~~L~~~~~l~~~~rv~v~LyGSLA-~TGkGHGTD~Avl~GL~G~-~Pd~~d~~~~~~~~~~~~~~~~ 95 (454)
T PRK15023 18 HTVGPMKAGKQFVDDLVEKGLLDSVTRVAVDVYGSLS-LTGKGHHTDIAIIMGLAGN-EPATVDIDSIPGFIRDVEERER 95 (454)
T ss_pred hHHHHHHHHHHHHHHHhhccccCCccEEEEEEEchhh-hcCCCccccHHHHhhhccC-CCCCcChhhhHHHHHHHhhcCc
Confidence 44455677775 6777621 1168999999999999 9999999999999999954 55576 66888
Q ss_pred HHHHhhCCceEEE--------EEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEE-EEeCCeeEEEEEcceEE
Q 046427 445 DFIAKQRGLRVTE--------ERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEG-RVKDGKPHLTKVGSFGV 515 (595)
Q Consensus 445 ~~iA~e~GI~v~f--------~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~G-SvgGG~i~I~~Idgf~v 515 (595)
+.+++++ +++.| .+.++ +.|||+..+...+. ++...+..+ |||||.|++-+=.+.+
T Consensus 96 l~la~~~-~~i~F~~~~di~f~~~~l-p~HPN~m~f~a~~~------------~~~~~e~~~ySIGGGfI~~~~~~~~~- 160 (454)
T PRK15023 96 LLLAQGR-HEVDFPRDNGMRFHNGNL-PLHENGMQIHAYNG------------DEVVYSKTYYSIGGGFIVDEEHFGQD- 160 (454)
T ss_pred cccCCCC-ceeecCcccceeECCCCC-CCCCCeeEEEEEeC------------CCcEEEEEEEEcCCceeeeccccccc-
Confidence 8888665 67776 33333 56999999987753 223446677 8889988864211111
Q ss_pred EeecCccEEEEEecCCC---CchhHHHhhhhcCCccccceEe
Q 046427 516 DVSLEGSIILCRQVDQP---GIIGKVGSLLGDNNVNVNFMSV 554 (595)
Q Consensus 516 ~~~~~~~~Liv~~~D~p---G~I~~I~~~L~~~~INIa~m~v 554 (595)
. .. ..+.| .-...+...-.++++.|..+.+
T Consensus 161 -~-~~-------~~~~py~f~s~~ell~~c~~~~~~i~e~v~ 193 (454)
T PRK15023 161 -A-AN-------EVSVPYPFKSATELLAYCNETGYSLSGLAM 193 (454)
T ss_pred -c-cC-------CCCCCcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 0 00 11222 2333455555677777776655
No 66
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.82 E-value=1.7e-08 Score=105.50 Aligned_cols=107 Identities=16% Similarity=0.243 Sum_probs=84.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcc-cCHHHh---ccccCEEEEeCCCChhccccccHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGL-VSFEEA---ISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-~~l~el---l~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
++|||||+|.||..+|+++...|++|.+||++.. .+...+.+... .+++++ ++++|+|++|+|.. .+..+++ +
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~-~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVLE-E 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHHH-H
Confidence 3799999999999999999999999999999863 34444555433 355554 56789999999976 7777774 5
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
....+++|.++||++.+...+...+.+.+++..+
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~ 112 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGI 112 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCC
Confidence 5677899999999999887788888888877655
No 67
>PLN02858 fructose-bisphosphate aldolase
Probab=98.81 E-value=1.7e-08 Score=123.98 Aligned_cols=116 Identities=17% Similarity=0.158 Sum_probs=97.3
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccc--cH
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMF--ND 266 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li--~~ 266 (595)
..++||+||+|.||..||++|...|++|.+||++.. .+...+.|...+ +..++.++||+|++|+|..+..+.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 356899999999999999999999999999999863 345566777654 89999999999999999988888887 34
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcCC--eeEEEEec
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGI--ISQAALDV 308 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~--i~ga~lDv 308 (595)
..+..+++|.++||+++...-....+.+.+.+.. + ..+|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~--~~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQI--FLVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCce--EEEEc
Confidence 5677899999999999999888888988887765 4 45663
No 68
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.81 E-value=1.4e-08 Score=103.45 Aligned_cols=112 Identities=13% Similarity=0.189 Sum_probs=93.6
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhcccccc--
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN-- 265 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~-- 265 (595)
...++||+||+|.||+.++..|...|++|++||++.+ .....+.|.+.. +..|+.+.||+|+.++|...+.++++.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 4578999999999999999999999999999999874 355677788765 799999999999999999888888874
Q ss_pred HHHHhcCCCceEE-EeccCCchhcHHHHHHHHhcCCe
Q 046427 266 DEAFFKMKKGVRI-VNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 266 ~~~l~~mk~gail-iN~arg~~vd~~aL~~aL~~g~i 301 (595)
...++..++|... ||.++-...-...+.+++.....
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~ 149 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGG 149 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCC
Confidence 3366667787776 89998777667788888877654
No 69
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.80 E-value=1.1e-07 Score=100.05 Aligned_cols=174 Identities=21% Similarity=0.207 Sum_probs=114.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHH-----------HcC---------Ccc-cCHHHhccccCEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRAR-----------ATG---------VGL-VSFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g---------~~~-~~l~ell~~aD~V 250 (595)
++|||||.|.||+.+|..+...|++|..||+.... +.+. +.+ +.. .++++++++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999987531 1111 111 122 2788999999999
Q ss_pred EEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCCCCCCCCCcccccCCcEEEc
Q 046427 251 SLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFTEEPPAKDSKLVLHENVTVT 329 (595)
Q Consensus 251 ~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~nvilT 329 (595)
+-|+|...+.+..+-++.-+.++++++ +.++..++ ...++.+.++. .++ .++.-|.+-+ .-||.+ |+-+
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aI-laSnTS~l-~~s~la~~~~~p~R~--~g~HffnP~~---~~pLVE---Vv~g 157 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAI-IASSTSGL-LPTDFYARATHPERC--VVGHPFNPVY---LLPLVE---VLGG 157 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeE-EEECCCcc-CHHHHHHhcCCcccE--EEEecCCccc---cCceEE---EeCC
Confidence 999999999888888887788999984 44444443 66667777654 355 5555554322 235553 4444
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 330 PHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 330 PHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
|+.. .++.+.+.+|++.-+-.+++-....+..+.+.+. +++.-|-+|
T Consensus 158 ~~T~-----------~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~l 205 (321)
T PRK07066 158 ERTA-----------PEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHL 205 (321)
T ss_pred CCCC-----------HHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHH
Confidence 4421 3445556666655443344333345556666665 666655555
No 70
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.79 E-value=1.5e-08 Score=106.53 Aligned_cols=95 Identities=28% Similarity=0.384 Sum_probs=73.4
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC--cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA--QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
|+||+|||||+|+||+++|+.|+.+|++|+++++.. +.+.+.+.|+...+..+++++||+|++|+|...+ ...+.++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~e 79 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQ-HEVYEAE 79 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhH-HHHHHHH
Confidence 578999999999999999999999999987755432 3344556788777889999999999999995433 3444455
Q ss_pred HHhcCCCceEEEeccCCch
Q 046427 268 AFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~ 286 (595)
....|+++. +|.++-|=-
T Consensus 80 i~~~l~~g~-iVs~aaG~~ 97 (314)
T TIGR00465 80 IQPLLKEGK-TLGFSHGFN 97 (314)
T ss_pred HHhhCCCCc-EEEEeCCcc
Confidence 667788886 777777643
No 71
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.79 E-value=1.8e-08 Score=104.72 Aligned_cols=109 Identities=19% Similarity=0.244 Sum_probs=87.0
Q ss_pred EEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhcccccc--HHHHhcC
Q 046427 197 VMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN--DEAFFKM 272 (595)
Q Consensus 197 IIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~--~~~l~~m 272 (595)
|||+|.||..+|+++...|++|.+||++.. .+...+.|+... ++.+++++||+|++|+|...+++.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 689999999999999999999999999863 344556676544 789999999999999997677777762 4456678
Q ss_pred CCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe
Q 046427 273 KKGVRIVNVARGGVVDEEALVRALDSGIISQAALD 307 (595)
Q Consensus 273 k~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD 307 (595)
++|.++||++....-..+.+.+.+.+..+ ..+|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~--~~vd 113 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGA--VFMD 113 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCC--cEEE
Confidence 99999999998777667778887776544 2455
No 72
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.78 E-value=9.4e-08 Score=99.30 Aligned_cols=173 Identities=18% Similarity=0.151 Sum_probs=104.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHH-------HcC-----------------Ccc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRAR-------ATG-----------------VGL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-------~~g-----------------~~~-~~l~ell~~ 246 (595)
++|+|||+|.||+.+|..+...|++|++||++... +.+. +.+ +.. .++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 57999999999999999999999999999987532 2211 111 112 367889999
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEE-EeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCc
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRI-VNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHEN 325 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gail-iN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~n 325 (595)
||+|+.|+|...+.+..+-.+..+.++++++| +|+|.-.+ ..+.+.++. .-...+++.+ .|. ...+ =
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~--~Pv-~~~~-----L 149 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF--NPV-HKMK-----L 149 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC--CCc-ccCc-----e
Confidence 99999999977766655544555678999877 78877554 445555533 2223566666 343 2233 4
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 326 VTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 326 vilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
+.+.|+-... .++.+.+..+++.-.....+. ...+..+.+.+. +++..|.++
T Consensus 150 ve~v~g~~t~---------~~~~~~~~~~l~~lg~~~v~v-~d~~Gf~~nRl~~~~~~ea~~~ 202 (288)
T PRK09260 150 VELIRGLETS---------DETVQVAKEVAEQMGKETVVV-NEFPGFVTSRISALVGNEAFYM 202 (288)
T ss_pred EEEeCCCCCC---------HHHHHHHHHHHHHcCCeEEEe-cCcccHHHHHHHHHHHHHHHHH
Confidence 4566653322 233445555554333222222 233344444443 555555444
No 73
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.78 E-value=6.1e-09 Score=112.15 Aligned_cols=99 Identities=21% Similarity=0.300 Sum_probs=79.4
Q ss_pred cccccccc-e-eeecCCEEEEEeCChHHHHHHHHHhcCCCEEE------EECCCC-cHHHHHHcCCcccCHHHhccccCE
Q 046427 179 KWQRNKYV-G-VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVI------AHDPYA-QADRARATGVGLVSFEEAISTADF 249 (595)
Q Consensus 179 ~W~~~~~~-g-~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~------~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~ 249 (595)
-|.+..|. + ..|+||||+|||+|.+|+.-|..++..|.+|+ +.|... +.+.+.+.|+...+++|++++||+
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADv 100 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADL 100 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCE
Confidence 48776552 2 46999999999999999988877787788777 233322 445566778888899999999999
Q ss_pred EEEeCCCChhccccccHHHHhcCCCceEEE
Q 046427 250 ISLHMPLTPATSKMFNDEAFFKMKKGVRIV 279 (595)
Q Consensus 250 V~l~~Plt~~t~~li~~~~l~~mk~gaili 279 (595)
|++.+|.+ + .+.+.++.+..||+|+.|.
T Consensus 101 VviLlPDt-~-q~~v~~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 101 VINLTPDK-Q-HSDVVRAVQPLMKQGAALG 128 (487)
T ss_pred EEEcCChH-H-HHHHHHHHHhhCCCCCEEE
Confidence 99999998 3 7777799999999998875
No 74
>PLN02858 fructose-bisphosphate aldolase
Probab=98.77 E-value=2.8e-08 Score=122.04 Aligned_cols=107 Identities=19% Similarity=0.145 Sum_probs=91.1
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccc--cHH
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMF--NDE 267 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li--~~~ 267 (595)
.++|||||+|.||..+|++|...|++|.+||++.. .+...+.|.. ..+..+++++||+|++|+|..++++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 47899999999999999999999999999998763 3344555654 3488999999999999999888888887 345
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.+..+++|.++||++....-..+.+.+.+.+
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 6788999999999999998778888888876
No 75
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.76 E-value=1.8e-08 Score=104.49 Aligned_cols=102 Identities=32% Similarity=0.468 Sum_probs=86.8
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
.-+.||++.|.|||..|+.+|.++++.|++|++..-.+ ..-.+...|++..++++....+|+++.++- ++++|..
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TG----nkdVi~~ 280 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATG----NKDVIRK 280 (420)
T ss_pred eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccC----CcCccCH
Confidence 35899999999999999999999999999999986555 334567789999999999999999999874 7899999
Q ss_pred HHHhcCCCceEEEeccCCch-hcHHHHH
Q 046427 267 EAFFKMKKGVRIVNVARGGV-VDEEALV 293 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~-vd~~aL~ 293 (595)
+.|..||+|+++-|.+.=.+ ||.+.|.
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~ 308 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGLE 308 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHHH
Confidence 99999999999999986444 3455543
No 76
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.75 E-value=1.6e-08 Score=95.04 Aligned_cols=90 Identities=31% Similarity=0.483 Sum_probs=68.1
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC--cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA--QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
|+||+|+|||||..|.+.|..|+..|.+|++-.+.. +.+.+++.|++..++.|+.++||+|++.+|.. ....+..++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~-~q~~vy~~~ 80 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDE-VQPEVYEEE 80 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HH-HHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChH-HHHHHHHHH
Confidence 689999999999999999999999999998765543 56788999999999999999999999999953 345555666
Q ss_pred HHhcCCCceEEEe
Q 046427 268 AFFKMKKGVRIVN 280 (595)
Q Consensus 268 ~l~~mk~gailiN 280 (595)
....||+|..|+=
T Consensus 81 I~p~l~~G~~L~f 93 (165)
T PF07991_consen 81 IAPNLKPGATLVF 93 (165)
T ss_dssp HHHHS-TT-EEEE
T ss_pred HHhhCCCCCEEEe
Confidence 7778999987764
No 77
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.74 E-value=3.6e-08 Score=108.89 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=94.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH----cCCc---ccCHHHhcc---ccCEEEEeCCCChhcc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA----TGVG---LVSFEEAIS---TADFISLHMPLTPATS 261 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~----~g~~---~~~l~ell~---~aD~V~l~~Plt~~t~ 261 (595)
.+|||||+|.||+.+|++|...|++|.+||++... +...+ .|.. ..+++++++ ++|+|++++|..+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 37999999999999999999999999999997632 22222 1432 347888886 5999999999888888
Q ss_pred ccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEE 312 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~E 312 (595)
.++ .+.+..+++|.+|||++.+..-+...+.+.+.+..+.....=|++.+
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~ 131 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGE 131 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCH
Confidence 888 45677899999999999999889999999998877743433355554
No 78
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.66 E-value=1.1e-07 Score=103.81 Aligned_cols=106 Identities=20% Similarity=0.183 Sum_probs=74.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc---ccCHHHh---------------ccccCEEEEeC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG---LVSFEEA---------------ISTADFISLHM 254 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~---~~~l~el---------------l~~aD~V~l~~ 254 (595)
++|+|||+|.||..+|..|...|++|++||++...-.....|.. ...++++ +++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 68999999999999999999999999999987643223333321 1234444 34799999999
Q ss_pred CCC------hhccccc--cHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 255 PLT------PATSKMF--NDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 255 Plt------~~t~~li--~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
|.. ++...+. -......+++|+++|+.+....-..+.+...+.+
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 953 1222222 1345567899999999998776666666665554
No 79
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.65 E-value=4.4e-07 Score=94.47 Aligned_cols=112 Identities=17% Similarity=0.257 Sum_probs=78.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHH-----------HcC-------------Cccc-CHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRAR-----------ATG-------------VGLV-SFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------~~~~-~l~ell~~ 246 (595)
++|+|||.|.||..+|..+...|++|++||++... +.+. +.| +... +++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 68999999999999999999999999999987532 2211 112 1222 454 5789
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEE-eccCCchhcHHHHHHHHhc-CCeeEEEEecCC
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIV-NVARGGVVDEEALVRALDS-GIISQAALDVFT 310 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gaili-N~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~ 310 (595)
||+|+.|+|...+.+..+-++....++++++|+ |++.-.+ .++.+.+.. .++ .++..+.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~~r~--~g~h~~~ 144 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDRPERF--IGIHFMN 144 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCcccE--EEeeccC
Confidence 999999999876655554455566789999887 6665443 356666542 344 4555555
No 80
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.64 E-value=1.1e-07 Score=105.16 Aligned_cols=117 Identities=21% Similarity=0.224 Sum_probs=89.3
Q ss_pred EEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHc---C--Cc-ccCHHHhc---cccCEEEEeCCCChhccccc
Q 046427 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARAT---G--VG-LVSFEEAI---STADFISLHMPLTPATSKMF 264 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~---g--~~-~~~l~ell---~~aD~V~l~~Plt~~t~~li 264 (595)
|||||+|.||+.+|+++...|++|.+||++.. .+...+. | +. ..+++++. +++|+|++|+|..+.+..++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi 81 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI 81 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH
Confidence 89999999999999999999999999999763 2333333 2 32 23666665 57999999999877788887
Q ss_pred cHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCC
Q 046427 265 NDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEE 312 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~E 312 (595)
+ ..+..+++|.++||++....-+.....+.+.+..+.....=|++.+
T Consensus 82 ~-~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~ 128 (467)
T TIGR00873 82 N-QLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE 128 (467)
T ss_pred H-HHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence 4 4667789999999999988888888888888776643333345544
No 81
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=98.60 E-value=9.1e-08 Score=77.16 Aligned_cols=68 Identities=24% Similarity=0.459 Sum_probs=60.9
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEE
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i 593 (595)
+++.+.|+||++++|++.|+++++||.+|.... .++.|++.++++....++++++|+++++|.+|+++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~a~~~~~~~~~~l~~li~~l~~~~~V~~v~~~ 69 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEIGYVVIDIDSEVSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCEEEEEEEcCCCCCHHHHHHHHcCCCeEEEEEC
Confidence 567899999999999999999999999997643 34789999999999888999999999999999874
No 82
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.60 E-value=1e-07 Score=99.99 Aligned_cols=83 Identities=20% Similarity=0.271 Sum_probs=68.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHh
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFF 270 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~ 270 (595)
.+++|||||+|.+|+.+|+++...|++|.+||++.. .++++++++||+|++|+|. +..+.+++.-...
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------~~~~~~~~~advvi~~vp~-~~~~~v~~~l~~~ 70 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------LSLAAVLADADVIVSAVSM-KGVRPVAEQVQAL 70 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------CCHHHHHhcCCEEEEECCh-HHHHHHHHHHHHh
Confidence 357899999999999999999999999999998642 3678889999999999996 5677777432122
Q ss_pred cCCCceEEEeccCCc
Q 046427 271 KMKKGVRIVNVARGG 285 (595)
Q Consensus 271 ~mk~gailiN~arg~ 285 (595)
.+++++++|++++|-
T Consensus 71 ~~~~~~ivi~~s~gi 85 (308)
T PRK14619 71 NLPPETIIVTATKGL 85 (308)
T ss_pred cCCCCcEEEEeCCcc
Confidence 478999999998743
No 83
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.59 E-value=2.7e-07 Score=90.98 Aligned_cols=108 Identities=31% Similarity=0.344 Sum_probs=80.9
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-HHcCCcccCHHHhcc-ccCEEEEeCCCChhcccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-RATGVGLVSFEEAIS-TADFISLHMPLTPATSKM 263 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~g~~~~~l~ell~-~aD~V~l~~Plt~~t~~l 263 (595)
+.+++||+++|+|+|+||+.+|+.|..+|++|+++|++... ... ...+...++.++++. +||+++.|.. .++
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~-----~~~ 97 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCAL-----GGV 97 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEeccc-----ccc
Confidence 45799999999999999999999999999999999987632 222 333666666677775 7999987664 467
Q ss_pred ccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 264 FNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
|+++.++.|+. .+++.-+-+.+-| ..-.+.|++..+
T Consensus 98 I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi 133 (200)
T cd01075 98 INDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGI 133 (200)
T ss_pred cCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCC
Confidence 88888888874 4777777777655 333555666555
No 84
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.59 E-value=2.8e-07 Score=100.87 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=92.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc-----------------ccCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG-----------------LVSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-----------------~~~l~ell~~aD~V~l~~P 255 (595)
.+|||||+|.||..+|..+.. |++|++||.+...-.....|.. ..+..+.+++||++++|+|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 689999999999999999877 6999999988643222223331 2233457899999999999
Q ss_pred CC------hhcccccc--HHHHhcCCCceEEEeccCCchhcHHHHHHH-Hhc--CCeeEEEEe-cCCCCCCCCC---ccc
Q 046427 256 LT------PATSKMFN--DEAFFKMKKGVRIVNVARGGVVDEEALVRA-LDS--GIISQAALD-VFTEEPPAKD---SKL 320 (595)
Q Consensus 256 lt------~~t~~li~--~~~l~~mk~gailiN~arg~~vd~~aL~~a-L~~--g~i~ga~lD-v~~~EP~~~~---~~L 320 (595)
.. ++...+.. ......+++|.++|+.|+-.+-..+.+++. +.+ |.-.+-... +|.+||.... ..+
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~ 165 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRL 165 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccc
Confidence 54 23344442 345577899999999999887766655443 433 321111111 3667887543 345
Q ss_pred ccCCcEEEcCCCCCCcHHH
Q 046427 321 VLHENVTVTPHLGASTTEA 339 (595)
Q Consensus 321 ~~~~nvilTPHi~~~t~ea 339 (595)
...+.+ ++|.+.++
T Consensus 166 ~~~~ri-----v~G~~~~~ 179 (425)
T PRK15182 166 TNIKKI-----TSGSTAQI 179 (425)
T ss_pred cCCCeE-----EECCCHHH
Confidence 566777 45555443
No 85
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.59 E-value=6.8e-07 Score=91.56 Aligned_cols=102 Identities=22% Similarity=0.269 Sum_probs=77.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC----EEEEE-CCCCc-HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhcccccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM----NVIAH-DPYAQ-ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~-~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
.+|||||+|+||+++|+.+...|+ +|++| |++.. .+.+.+.|+... +..+++++||+|++|+| .+....++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence 379999999999999999998887 89999 87653 334455677544 78889999999999997 555777664
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
+....++++.++|++..| +..+.+.+.+..
T Consensus 80 -~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 80 -ELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred -HHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 344557889998988655 356666665543
No 86
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.58 E-value=9.3e-07 Score=92.82 Aligned_cols=165 Identities=16% Similarity=0.122 Sum_probs=95.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHH-----------HHHcCC-------------cc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADR-----------ARATGV-------------GL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~-----------a~~~g~-------------~~-~~l~ell~~ 246 (595)
++|+|||+|.||.++|..+...|++|++||+... .+. ..+.|. .. .++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 4799999999999999999999999999998752 121 112342 22 378889999
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcE
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENV 326 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nv 326 (595)
||+|+.|+|...+.+..+-.+.-...++.+++. .+... .....+.+.+..... ...|-+-+ |. +-.+=+
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~-ssts~-~~~~~la~~~~~~~~--~~~~hp~~-p~------~~~~lv 151 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILA-SSTSA-LLASAFTEHLAGRER--CLVAHPIN-PP------YLIPVV 151 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE-EeCCC-CCHHHHHHhcCCccc--EEEEecCC-Cc------ccCceE
Confidence 999999999765444433232222345555443 33333 345667777754322 23333332 21 111336
Q ss_pred EEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhcc
Q 046427 327 TVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISEL 377 (595)
Q Consensus 327 ilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~ 377 (595)
.++||-++. . +..+.+..+++.-....++..+..+..+.+.+
T Consensus 152 eiv~~~~t~-~--------~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl 193 (308)
T PRK06129 152 EVVPAPWTA-P--------ATLARAEALYRAAGQSPVRLRREIDGFVLNRL 193 (308)
T ss_pred EEeCCCCCC-H--------HHHHHHHHHHHHcCCEEEEecCCCccHHHHHH
Confidence 688876544 2 23344445544333333333344445455444
No 87
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.57 E-value=1.5e-07 Score=95.52 Aligned_cols=103 Identities=29% Similarity=0.416 Sum_probs=85.5
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
-+.||.+.|.|||.+|+..|+.|++||.+|++....+ ..-++...|++.++++|+.++.|+++.++ .++++|..+
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~~~ 286 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIITGE 286 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhhHH
Confidence 4789999999999999999999999999999964443 34456678999999999999999999965 578999999
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.|.+||.++|+.|++.- |.+-=+.+|+.
T Consensus 287 H~~~mk~d~IvCN~Ghf---d~EiDv~~L~~ 314 (434)
T KOG1370|consen 287 HFDQMKNDAIVCNIGHF---DTEIDVKWLNT 314 (434)
T ss_pred HHHhCcCCcEEeccccc---cceeehhhccC
Confidence 99999999999999753 33333444544
No 88
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.56 E-value=1.1e-07 Score=82.01 Aligned_cols=88 Identities=25% Similarity=0.394 Sum_probs=65.3
Q ss_pred EEEEEeCChHHHHHHHHHhcCC---CEEE-EECCCCc--HHHHHHcCCccc--CHHHhccccCEEEEeCCCChhcccccc
Q 046427 194 TLAVMGFGKVGTEVARRAKGLG---MNVI-AHDPYAQ--ADRARATGVGLV--SFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G---~~V~-~~d~~~~--~~~a~~~g~~~~--~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
||||||+|+||.++++.+...| .+|+ +++++.. .+.+.+.++... +..+++++||+|++|+|. .....++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p-~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKP-QQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-G-GGHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECH-HHHHHHHH
Confidence 6999999999999999999999 8999 5588763 234456665433 689999999999999994 34555443
Q ss_pred HHHHhcCCCceEEEeccCC
Q 046427 266 DEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg 284 (595)
.- ....++.++|++.-|
T Consensus 80 ~i--~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 80 EI--PHLLKGKLVISIAAG 96 (96)
T ss_dssp HH--HHHHTTSEEEEESTT
T ss_pred HH--hhccCCCEEEEeCCC
Confidence 32 556788899988643
No 89
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.55 E-value=1.3e-06 Score=90.80 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=93.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HH-----------HHHcCC-------------cc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DR-----------ARATGV-------------GL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g~-------------~~-~~l~ell~~ 246 (595)
++|||||.|.||+.+|..+...|++|+.||+.... +. ..+.|. +. .++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999999999999987632 22 222231 12 256 55899
Q ss_pred cCEEEEeCCCChhccccccHHHHhcC-CCceEEEeccCCchhcHHHHHHHHh-cCCeeEEEEecCCCCCCCCCcccccCC
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKM-KKGVRIVNVARGGVVDEEALVRALD-SGIISQAALDVFTEEPPAKDSKLVLHE 324 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~m-k~gailiN~arg~~vd~~aL~~aL~-~g~i~ga~lDv~~~EP~~~~~~L~~~~ 324 (595)
||+|+-|+|...+.+..+-.+.-+.+ +++++|++.+.+-.+. ++..++. ..++ .+++-|.+-| ..+|
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~--~la~~~~~~~r~--~g~hf~~P~~---~~~l---- 153 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM--KLAAATKRPGRV--LGLHFFNPVP---VLPL---- 153 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCCccE--EEEecCCCcc---cCce----
Confidence 99999999999888877755433334 7899998877665443 3344432 2344 5666666332 2333
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 046427 325 NVTVTPHLGASTTEAQEGVAIEIAEAVIGALK 356 (595)
Q Consensus 325 nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~ 356 (595)
+=++||.+++ .++++.+..|+.
T Consensus 154 -vElv~~~~T~---------~~~~~~~~~~~~ 175 (286)
T PRK07819 154 -VELVPTLVTS---------EATVARAEEFAS 175 (286)
T ss_pred -EEEeCCCCCC---------HHHHHHHHHHHH
Confidence 3456654444 345556666644
No 90
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.51 E-value=1.8e-06 Score=89.34 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=72.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHH------------HHHHcC-------------Cccc-CHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD------------RARATG-------------VGLV-SFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~------------~a~~~g-------------~~~~-~l~ell~~ 246 (595)
++|+|||+|.||..+|..+...|++|++||++.... ...+.| +... +++ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 579999999999999999999999999999875321 112233 1212 454 4799
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
||+|++|+|...+.+.-+-++.-..++++++|+....| +....+.+.+..
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 99999999977766644444455668999988433333 455577777743
No 91
>TIGR00720 sda_mono L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein.
Probab=98.50 E-value=4e-07 Score=98.52 Aligned_cols=132 Identities=13% Similarity=-0.029 Sum_probs=86.3
Q ss_pred CceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccH------------HHHHhhCCceEEEEEeec-----
Q 046427 400 GVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNA------------DFIAKQRGLRVTEERIVL----- 462 (595)
Q Consensus 400 ~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA------------~~iA~e~GI~v~f~~~~~----- 462 (595)
.+++++++++|||+ .|.++|++|+|++.||++ +..++++.... +.++.+++|+|.|.....
T Consensus 41 ~~~rv~v~LyGSLA-~TGkGHgTD~Avl~GL~G-~~P~~vd~~~~~~~~~~~~~~~~l~l~~~~~i~f~~~~di~f~~~~ 118 (455)
T TIGR00720 41 QVTRVQVDLYGSLA-LTGKGHLTDIAILMGLAG-IYPNTVDIDTKKGFLHEVLENKVLKLAGQHHVPFDYANDLIFHNKP 118 (455)
T ss_pred CCcEEEEEEEchhh-hcCCCccccHHHHHHhcC-CCCCCcChhhhHHHHHHHHhcCeeecCCCCccccCcccceeeCCCC
Confidence 58999999999999 999999999999999994 45557766643 344556888877643222
Q ss_pred CCCCCCCceEEEEEeeeccccccccccCCce-EEEEE-EEeCCeeEEEEEcceEEEeecCccEEEEEecCCC---CchhH
Q 046427 463 DGSPENPLEFIQVQIANVESKFGSAISDIGD-IRVEG-RVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQP---GIIGK 537 (595)
Q Consensus 463 ~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~-~~v~G-SvgGG~i~I~~Idgf~v~~~~~~~~Liv~~~D~p---G~I~~ 537 (595)
.+.|||+..+...+. ++.. .+.++ |||||.|+.-+=.+.+. .. ..+.| --...
T Consensus 119 lp~HPNgm~f~a~d~------------~g~~l~~~t~ySIGGGfI~~~~~~~~~~---~~-------~~~~p~~f~s~~e 176 (455)
T TIGR00720 119 LPLHENGMTITAFNS------------KNEVLYEETYYSVGGGFIVTEKHFGSEE---DN-------NVSVAYPFKSAKE 176 (455)
T ss_pred CCCCCCeeEEEEEeC------------CCCEEEEEEEEEcCCceeeecccccccc---cc-------CCCCCcCCCCHHH
Confidence 357999998887764 2222 36667 88899876431101110 00 01122 23444
Q ss_pred HHhhhhcCCccccceEee
Q 046427 538 VGSLLGDNNVNVNFMSVG 555 (595)
Q Consensus 538 I~~~L~~~~INIa~m~v~ 555 (595)
+...-.+++++|..+.+.
T Consensus 177 ll~~~~~~~~~i~e~v~~ 194 (455)
T TIGR00720 177 LLELCQKHGKSISEIALL 194 (455)
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 666667778888877553
No 92
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.47 E-value=2.9e-06 Score=88.99 Aligned_cols=109 Identities=21% Similarity=0.297 Sum_probs=71.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH-----cC--------------Ccc-cCHHHhccccCEEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA-----TG--------------VGL-VSFEEAISTADFIS 251 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----~g--------------~~~-~~l~ell~~aD~V~ 251 (595)
++|+|||+|.||+.+|..+...|++|++||++... +...+ .+ +.. .++++++++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 58999999999999999999999999999986522 22211 12 122 36778899999999
Q ss_pred EeCCCChhc-cccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEE
Q 046427 252 LHMPLTPAT-SKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQA 304 (595)
Q Consensus 252 l~~Plt~~t-~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga 304 (595)
+|+|...+. ..++ .+.-..++++++|+....| + ....+.+.+.. .++.|+
T Consensus 85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg-~-~~~~l~~~~~~~~~~ig~ 136 (311)
T PRK06130 85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG-L-PITAIAQAVTRPERFVGT 136 (311)
T ss_pred EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC-C-CHHHHHhhcCCcccEEEE
Confidence 999976533 3333 3222346777766433333 2 45567776643 355444
No 93
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.47 E-value=7.3e-07 Score=92.06 Aligned_cols=102 Identities=20% Similarity=0.310 Sum_probs=77.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC----EEEEECCCCc-HHHHH-HcCCccc-CHHHhccccCEEEEeCCCChhcccccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM----NVIAHDPYAQ-ADRAR-ATGVGLV-SFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~----~V~~~d~~~~-~~~a~-~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
++|||||+|+||+++++.+...|+ +|++||++.. .+.+. +.|+... +..+++++||+|++|+| ......++.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl~ 81 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVIN 81 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHHH
Confidence 589999999999999999987664 7999998763 23333 3676544 68889999999999999 466776663
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
+....++++.++|++.-|- +.+.|.+.+..
T Consensus 82 -~l~~~~~~~~lvISi~AGi--~i~~l~~~l~~ 111 (272)
T PRK12491 82 -QIKDQIKNDVIVVTIAAGK--SIKSTENEFDR 111 (272)
T ss_pred -HHHHhhcCCcEEEEeCCCC--cHHHHHHhcCC
Confidence 3334568889999998774 66677777753
No 94
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.46 E-value=7.6e-07 Score=71.37 Aligned_cols=71 Identities=35% Similarity=0.623 Sum_probs=62.1
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEE
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i 593 (595)
+|.+.+.|+||+++.+++.|+++++||.++.......++.+.+.+.+++...++++++|+++++|.+|+++
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~l~~~~~v~~v~~~ 71 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCCCCHHHHHHHHcCCCceEEEEC
Confidence 46778999999999999999999999999988653346678888999988777999999999999999875
No 95
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=98.45 E-value=7.6e-07 Score=71.14 Aligned_cols=70 Identities=36% Similarity=0.612 Sum_probs=62.6
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEEE
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~i 593 (595)
|.+...|+||+++.|+++|+++++||.++++.+...++.+.+.+.+++....+++++|+++++|.+|+++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~~~V~~v~~~ 71 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCCCCHHHHHHHHcCCCeEEEEEC
Confidence 6788999999999999999999999999999766545788889999888777999999999999999874
No 96
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.45 E-value=3.8e-06 Score=87.44 Aligned_cols=115 Identities=22% Similarity=0.244 Sum_probs=78.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH--------------cCC-------------ccc-CHHHh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA--------------TGV-------------GLV-SFEEA 243 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~--------------~g~-------------~~~-~l~el 243 (595)
++|+|||.|.||+.+|..+...|++|++||++... +.+.+ .|. ... ++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 58999999999999999999999999999987632 21110 111 111 34 56
Q ss_pred ccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCCCC
Q 046427 244 ISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFTEE 312 (595)
Q Consensus 244 l~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~E 312 (595)
+++||+|+.|+|...+.+.-+-++.-..++++++|+.+..|- ....+.+.+.. .++ .+++-|.+-
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~--ig~hf~~P~ 148 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRF--IGMHWFNPA 148 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccE--EEEecCCCc
Confidence 799999999999765544444344445578999998777663 55666676643 344 455545443
No 97
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.45 E-value=4.7e-07 Score=93.98 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=68.3
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||+|+|||.| .||+.+|.+|...|+.|..|++... ++.++.++||+|+++++.. +++.
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------------~l~e~~~~ADIVIsavg~~----~~v~ 217 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------------DAKALCRQADIVVAAVGRP----RLID 217 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCCh----hccc
Confidence 568999999999996 9999999999999999999986532 6889999999999999854 3555
Q ss_pred HHHHhcCCCceEEEeccCCc
Q 046427 266 DEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~ 285 (595)
... +|+|+++||+|--.
T Consensus 218 ~~~---ik~GaiVIDvgin~ 234 (301)
T PRK14194 218 ADW---LKPGAVVIDVGINR 234 (301)
T ss_pred Hhh---ccCCcEEEEecccc
Confidence 543 79999999998544
No 98
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.44 E-value=3e-06 Score=94.76 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=74.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHH-------------------HcC-Ccc-cCHHHhccccCEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRAR-------------------ATG-VGL-VSFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-------------------~~g-~~~-~~l~ell~~aD~V 250 (595)
++|||||+|.||+.+|..+...|++|.+||++... +... ..| +.. .++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 58999999999999999999999999999997632 1110 112 333 3788999999999
Q ss_pred EEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 251 SLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 251 ~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
+.|+|...+.+..+-.+.-..++++++ |.++..++ ....+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCC-CHHHHHhhcCC
Confidence 999998766666443444445777765 55555554 45567776644
No 99
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.44 E-value=2.9e-06 Score=95.00 Aligned_cols=115 Identities=20% Similarity=0.260 Sum_probs=84.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHH-----------HHHcC-------------Ccc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADR-----------ARATG-------------VGL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~-----------a~~~g-------------~~~-~~l~ell~~ 246 (595)
++|||||+|.||+.||..+...|++|+.||++.. .+. ..+.| +.. .++++ +.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 5799999999999999999999999999998763 222 12334 222 25655 569
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEE-EeccCCchhcHHHHHHHHhc-CCeeEEEEecCCCCC
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRI-VNVARGGVVDEEALVRALDS-GIISQAALDVFTEEP 313 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gail-iN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~EP 313 (595)
||+|+.|+|...+.+..+-.+.-..++++++| +|+|.-.+ .++..++.. .++ .|++.|.+-|
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p~r~--~G~hff~Pa~ 150 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHPERV--AGLHFFNPVP 150 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCcccE--EEEeecCCcc
Confidence 99999999998888887765544557899999 59987665 356666543 344 5667676444
No 100
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.43 E-value=1.8e-06 Score=94.31 Aligned_cols=101 Identities=25% Similarity=0.307 Sum_probs=71.4
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHH--------------------cC-Ccc-cCHHHhccccCEEE
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARA--------------------TG-VGL-VSFEEAISTADFIS 251 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~--------------------~g-~~~-~~l~ell~~aD~V~ 251 (595)
+|||||+|.||..+|..+...|++|++||++...-.... .| +.. .++++++++||+|+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi 81 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII 81 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE
Confidence 799999999999999999999999999998753211111 23 222 26788899999999
Q ss_pred EeCCCChh------cccccc--HHHHhcCCCceEEEeccCCchhcHHHHHH
Q 046427 252 LHMPLTPA------TSKMFN--DEAFFKMKKGVRIVNVARGGVVDEEALVR 294 (595)
Q Consensus 252 l~~Plt~~------t~~li~--~~~l~~mk~gailiN~arg~~vd~~aL~~ 294 (595)
+|+|.... ...+.. ......+++|.++|+++.-.+=..+.+.+
T Consensus 82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~ 132 (411)
T TIGR03026 82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVK 132 (411)
T ss_pred EEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHH
Confidence 99995432 111221 33455689999999998655444555553
No 101
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.42 E-value=1.5e-06 Score=81.39 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=77.2
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCCcH--HHHHHcCC-----cccCHHHhccccCEEEEeCCCChh-
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYAQA--DRARATGV-----GLVSFEEAISTADFISLHMPLTPA- 259 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~g~-----~~~~l~ell~~aD~V~l~~Plt~~- 259 (595)
++.+++++|+|+|.||+.+++.+...| .+|.++|++... +.+.+.+. ...+++++++++|+|++|+|....
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 466889999999999999999999885 789999987632 22333342 334778889999999999997653
Q ss_pred ccc-cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCC
Q 046427 260 TSK-MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGI 300 (595)
Q Consensus 260 t~~-li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~ 300 (595)
... .+.. ..++++.+++|++..+.. + .+.+.+++..
T Consensus 96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g 132 (155)
T cd01065 96 GDELPLPP---SLLKPGGVVYDVVYNPLE-T-PLLKEARALG 132 (155)
T ss_pred CCCCCCCH---HHcCCCCEEEEcCcCCCC-C-HHHHHHHHCC
Confidence 122 2332 236899999999876543 3 6666666543
No 102
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.42 E-value=6.7e-07 Score=96.28 Aligned_cols=142 Identities=23% Similarity=0.323 Sum_probs=96.2
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-HHcCCc----c---cCHHHhccccCEEEEeCCCC-hh
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-RATGVG----L---VSFEEAISTADFISLHMPLT-PA 259 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~g~~----~---~~l~ell~~aD~V~l~~Plt-~~ 259 (595)
+.++++.|+|.|.+|+.+++.++++|++|.++|++... +.. ...+.. . .++.+.++++|+|+.+++.+ ..
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 67788999999999999999999999999999987532 222 223321 1 24678889999999998653 23
Q ss_pred ccccccHHHHhcCCCceEEEecc--CCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccC--CcEEEcCCCCCC
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVA--RGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLH--ENVTVTPHLGAS 335 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~a--rg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~--~nvilTPHi~~~ 335 (595)
+..+++++.++.||++++|||++ .|+.+. ...|..-+.|.+.. -.++.-||+-+.
T Consensus 245 ~p~lit~~~l~~mk~g~vIvDva~d~GG~~e---------------------~~~~t~~d~p~~~~~Gv~~~~v~nlP~~ 303 (370)
T TIGR00518 245 APKLVSNSLVAQMKPGAVIVDVAIDQGGCVE---------------------TSRPTTHDQPTYAVHDVVHYCVANMPGA 303 (370)
T ss_pred CCcCcCHHHHhcCCCCCEEEEEecCCCCCcc---------------------CCcCCCCCCCEEEECCeEEEEeCCcccc
Confidence 56688999999999999999998 333321 11222223444433 234667777665
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 046427 336 TTEAQEGVAIEIAEAVIGAL 355 (595)
Q Consensus 336 t~ea~~~~~~~~~~~l~~~l 355 (595)
-. ...+....+++..|+
T Consensus 304 ~p---~~aS~~~~~~l~~~l 320 (370)
T TIGR00518 304 VP---KTSTYALTNATMPYV 320 (370)
T ss_pred cH---HHHHHHHHHHHHHHH
Confidence 42 233455566666665
No 103
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.41 E-value=1.3e-05 Score=89.13 Aligned_cols=185 Identities=18% Similarity=0.227 Sum_probs=113.3
Q ss_pred CceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceEEeCCCCC--chHHHHHHHHHH--HHHHHch
Q 046427 93 LCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTAN--TIAAAEHGIALL--TAMARNI 168 (595)
Q Consensus 93 ~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~~--~~~vAE~~l~l~--l~~~R~i 168 (595)
++|+|+- -. +.+.+.++.+.++--+|+...-.-|.=-++++.+++|.+..--... +++-.=.++.-| ++-.|-+
T Consensus 64 ~adiIlk-V~-~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Av 141 (511)
T TIGR00561 64 QSDIILK-VN-APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAI 141 (511)
T ss_pred cCCEEEE-eC-CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHH
Confidence 5787662 11 2344556666566677776665554444688889999887632211 110000111111 1122222
Q ss_pred HHHHHHHHcCcccccc--cceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc--C----
Q 046427 169 AQADASVKAGKWQRNK--YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV--S---- 239 (595)
Q Consensus 169 ~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~--~---- 239 (595)
..+.+.. |++.... ..| .+.+.++.|+|.|.+|...++.++.+|.+|+++|.+. ..+.++++|.+.+ +
T Consensus 142 i~Aa~~l--gr~~~g~~taag-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~ 218 (511)
T TIGR00561 142 IEAAHEF--GRFFTGQITAAG-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEE 218 (511)
T ss_pred HHHHHHh--hhhcCCceecCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEecccccc
Confidence 2221111 2221100 011 3457899999999999999999999999999999876 4456666776541 1
Q ss_pred ----------------------HHHhccccCEEEEeC--CCChhccccccHHHHhcCCCceEEEeccC
Q 046427 240 ----------------------FEEAISTADFISLHM--PLTPATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 240 ----------------------l~ell~~aD~V~l~~--Plt~~t~~li~~~~l~~mk~gailiN~ar 283 (595)
+.+.++++|+|+.++ |-.+ .-.++.++.++.||+|+++||++-
T Consensus 219 g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 219 GGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred ccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 445678899998887 3222 236789999999999999999984
No 104
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.39 E-value=2e-06 Score=89.09 Aligned_cols=103 Identities=11% Similarity=0.140 Sum_probs=74.9
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCC----CEEEEECCCCc-H-HH-HHHcCCccc-CHHHhccccCEEEEeCCCChhcccc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLG----MNVIAHDPYAQ-A-DR-ARATGVGLV-SFEEAISTADFISLHMPLTPATSKM 263 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~-~-~~-a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~l 263 (595)
+++|||||+|+||+++|+.+...| .+|++||++.. . +. ....|+... +..+++++||+|++|+| .......
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHHH
Confidence 468999999999999999999777 78999998652 2 22 233476543 78889999999999999 4445555
Q ss_pred ccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 264 FNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
+ ......++++.+||++.-|- ..+.+.+.+..
T Consensus 82 l-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~~ 113 (279)
T PRK07679 82 L-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQK 113 (279)
T ss_pred H-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCC
Confidence 5 33344578889999986543 55556665543
No 105
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.35 E-value=1.1e-07 Score=109.89 Aligned_cols=179 Identities=15% Similarity=0.090 Sum_probs=129.1
Q ss_pred EEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHh-------cCCeeEEEEecCCCCCCCCCccccc
Q 046427 250 ISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALD-------SGIISQAALDVFTEEPPAKDSKLVL 322 (595)
Q Consensus 250 V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~-------~g~i~ga~lDv~~~EP~~~~~~L~~ 322 (595)
|++|+|. ..+..++.+ ....++++++++|++.-+---.++..+.|. .+|. .||-++.+.+ .++..||+
T Consensus 1 vila~Pv-~~~~~~~~~-~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e~~G~~--~a~~~Lf~ 75 (673)
T PRK11861 1 VLLAAPV-AQTGPLLAR-IAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRESSGVD--AALADLYV 75 (673)
T ss_pred CEEEcCH-HHHHHHHHH-HhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCcchhhh--hhChhHhC
Confidence 6899994 456666644 445689999999999766543344444443 2333 3778877777 67888999
Q ss_pred CCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chhHHHHHHHHH--------HH
Q 046427 323 HENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA--PFVTLAEKLGGL--------AV 392 (595)
Q Consensus 323 ~~nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~~la~rlG~l--------~~ 392 (595)
+.++|+||.-... .+ ..+.+.++++.-+.+.....|..|++.++.++ ||+.....+..+ ..
T Consensus 76 ~~~~il~p~~~~~-~~--------~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~~~~~~~~~~~ 146 (673)
T PRK11861 76 GRNVVLCALPENA-PD--------ALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQILGESDAELKF 146 (673)
T ss_pred CCeEEEecCCCCC-HH--------HHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHHhhccChhHHH
Confidence 9999999954322 22 23455556666667888889999999999999 888766665544 23
Q ss_pred HHhcCCCCceEEEEEEeecCCCCCcccccchHHHHHhhcccccccccccccHH
Q 046427 393 QLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIEPISSVFVNLVNAD 445 (595)
Q Consensus 393 qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~~nA~ 445 (595)
+|+++ +|+++++.+.+++. +|.++...|+..+...|+.+..+...+++++
T Consensus 147 ~~a~~--gfrd~tRia~~~p~-lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l 196 (673)
T PRK11861 147 SYAAG--GFRDFTRIAASSPE-MWRDVCLANRAALLDELDAYTAVLARLRAAI 196 (673)
T ss_pred Hhccc--chhcccccccCCHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777 89999999999998 9999999999977666766655444444444
No 106
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.34 E-value=8e-06 Score=91.34 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=82.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HH-----------HHHcCC-------------cc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DR-----------ARATGV-------------GL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g~-------------~~-~~l~ell~~ 246 (595)
++|||||+|.||+.||..+...|++|..||++... +. ..+.|. .. .++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 57999999999999999999999999999987532 21 122231 12 25655 569
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEE-eccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCC
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIV-NVARGGVVDEEALVRALDSGIISQAALDVFTEEPP 314 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gaili-N~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~ 314 (595)
||+|+.|+|...+.+..+-.+.-..++++++|. |++.-.+ ..+.+++.. .-...+++-|.+-|.
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv 149 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV 149 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence 999999999888887776555555688888876 7766443 456666643 223467777765544
No 107
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.30 E-value=3.3e-06 Score=87.66 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCCCEEEEECCCCcH------HHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCce
Q 046427 204 GTEVARRAKGLGMNVIAHDPYAQA------DRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGV 276 (595)
Q Consensus 204 G~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~ga 276 (595)
|+.+|++|...|+.|++||++... +...+.|+..+ +..+++++||+|++|+|..+.++.++ ...+..+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 889999999999999999986531 23566787665 68999999999999999888888887 45788899999
Q ss_pred EEEeccCCchhcHHHHHHHHhc
Q 046427 277 RIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 277 iliN~arg~~vd~~aL~~aL~~ 298 (595)
++||+++... +.++..|+.
T Consensus 111 IVID~STIsP---~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCTVSP---VVLYYSLEK 129 (341)
T ss_pred EEEECCCCCH---HHHHHHHHH
Confidence 9999977544 445554444
No 108
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.29 E-value=5.3e-08 Score=95.55 Aligned_cols=132 Identities=17% Similarity=0.277 Sum_probs=84.1
Q ss_pred EEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcC
Q 046427 194 TLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKM 272 (595)
Q Consensus 194 tvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~m 272 (595)
+++|||- |.+|+.+++.++..|+.|. +++||+|++|+|.. .+..++.+ +
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~------------------------~~~~DlVilavPv~-~~~~~i~~-----~ 51 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY------------------------IKKADHAFLSVPID-AALNYIES-----Y 51 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE------------------------ECCCCEEEEeCCHH-HHHHHHHH-----h
Confidence 7899988 9999999999999999985 36899999999953 45555533 3
Q ss_pred CCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe-cCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHH
Q 046427 273 KKGVRIVNVARGGVVDEEALVRALDSGIISQAALD-VFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAV 351 (595)
Q Consensus 273 k~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD-v~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~l 351 (595)
. .+|+|++.-+-- +.++ .+.+.| .. -|+ |-.+...|+ .++++++.. ...++ .+.+
T Consensus 52 ~--~~v~Dv~SvK~~----i~~~--~~~~vg--~HPMfG--p~~a~~~lf--~~~iv~~~~--~~~~~--------~~~~ 107 (197)
T PRK06444 52 D--NNFVEISSVKWP----FKKY--SGKIVS--IHPLFG--PMSYNDGVH--RTVIFINDI--SRDNY--------LNEI 107 (197)
T ss_pred C--CeEEeccccCHH----HHHh--cCCEEe--cCCCCC--CCcCccccc--ceEEEECCC--CCHHH--------HHHH
Confidence 2 379999976541 2222 112211 11 022 223334455 466665432 22222 2355
Q ss_pred HHHHcCCCCCccccCCCCChhhhhccc--chh
Q 046427 352 IGALKGELAATAVNAPMVPAEVISELA--PFV 381 (595)
Q Consensus 352 ~~~l~g~~~~~~vn~~~~~~~~~~~~~--p~~ 381 (595)
.++++| .+.....|..|++.++.++ ||+
T Consensus 108 ~~l~~G--~~~~~~t~eeHD~~~A~ishLpH~ 137 (197)
T PRK06444 108 NEMFRG--YHFVEMTADEHDLLMSEIMVKPYI 137 (197)
T ss_pred HHHHcC--CEEEEeCHHHHHHHHHHHHHHHHH
Confidence 666664 5667788999999999888 776
No 109
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.28 E-value=2.7e-06 Score=87.84 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=76.1
Q ss_pred CCEEEEEeCChHHHHHHHHHhc--CCCEEE-EECCCCcH--HHHHHcCC-c-ccCHHHhccccCEEEEeCCCChhccccc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKG--LGMNVI-AHDPYAQA--DRARATGV-G-LVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~--~G~~V~-~~d~~~~~--~~a~~~g~-~-~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
..+|||||+|+||+.+++.+.. .++++. +||+.... +.+...|. . +.+++++++++|+|++|+|... -..+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~-h~e~- 83 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV-LRAI- 83 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH-HHHH-
Confidence 4689999999999999999985 578876 57886532 23344453 2 3589999999999999999432 2222
Q ss_pred cHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 265 NDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
. ...++.|.-++..+.|.+.+.++|.++.+++..
T Consensus 84 ~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~ 117 (271)
T PRK13302 84 V---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGG 117 (271)
T ss_pred H---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCC
Confidence 2 233566776777788888788888888776543
No 110
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.27 E-value=2e-06 Score=88.67 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=69.4
Q ss_pred ceeeecCCEEEEEeCChH-HHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGKV-GTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||.|.+ |+.+|..|...|+.|..++... .++.+.+++||+|+.++| +.+++
T Consensus 152 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t------------~~l~~~~~~ADIVV~avG----~~~~i 215 (285)
T PRK14189 152 IGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT------------RDLAAHTRQADIVVAAVG----KRNVL 215 (285)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC------------CCHHHHhhhCCEEEEcCC----CcCcc
Confidence 356899999999999998 9999999999999999876421 268899999999999999 45678
Q ss_pred cHHHHhcCCCceEEEeccCCch
Q 046427 265 NDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~ 286 (595)
+. +.+|+|+++||+|--.+
T Consensus 216 ~~---~~ik~gavVIDVGin~~ 234 (285)
T PRK14189 216 TA---DMVKPGATVIDVGMNRD 234 (285)
T ss_pred CH---HHcCCCCEEEEcccccc
Confidence 87 44799999999986543
No 111
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.26 E-value=4.1e-06 Score=88.63 Aligned_cols=100 Identities=27% Similarity=0.319 Sum_probs=73.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHc--------C------Cc-ccCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARAT--------G------VG-LVSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~--------g------~~-~~~l~ell~~aD~V~l~~Pl 256 (595)
++|+|||+|.||..+|.+|...|++|.+|+++.. .+..... | +. ..++++++++||+|++++|.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~ 84 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPS 84 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECch
Confidence 5899999999999999999999999999999653 2222222 3 22 23788889999999999996
Q ss_pred ChhccccccHHHHhcCCCceEEEeccCC-chhc--HHHHHHHHhc
Q 046427 257 TPATSKMFNDEAFFKMKKGVRIVNVARG-GVVD--EEALVRALDS 298 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~gailiN~arg-~~vd--~~aL~~aL~~ 298 (595)
.. + ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 85 ~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 85 KA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred HH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 52 3 4455778999999999997 3222 4455555544
No 112
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.25 E-value=2.6e-05 Score=80.00 Aligned_cols=105 Identities=19% Similarity=0.271 Sum_probs=71.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC---CEEEEECCCCc-HHHHHH-cCCcc-cCHHHhccccCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG---MNVIAHDPYAQ-ADRARA-TGVGL-VSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G---~~V~~~d~~~~-~~~a~~-~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
++|+|||+|.||+.+|+.+...| .+|.+||++.. .+...+ .|+.. .+.++++++||+|++|+|. .....++..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~~~ 81 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVLSE 81 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHHHH
Confidence 47999999999999999999888 78999999763 233333 36644 3678889999999999983 345555433
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeE
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQ 303 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~g 303 (595)
....+ +..||.+.-|- ..+.+.+.+..+ ++..
T Consensus 82 -l~~~~--~~~vvs~~~gi--~~~~l~~~~~~~~~iv~ 114 (267)
T PRK11880 82 -LKGQL--DKLVVSIAAGV--TLARLERLLGADLPVVR 114 (267)
T ss_pred -HHhhc--CCEEEEecCCC--CHHHHHHhcCCCCcEEE
Confidence 22223 45677765543 566666666533 4433
No 113
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.24 E-value=1e-05 Score=87.75 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=83.0
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH----------------cCCcc---cCHHHhccccCEEEEe
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA----------------TGVGL---VSFEEAISTADFISLH 253 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~----------------~g~~~---~~l~ell~~aD~V~l~ 253 (595)
+|+|||+|.||..+|..+. .|++|++||.+... +...+ .+... .+..++.++||+|++|
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~ 80 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA 80 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence 6999999999999997766 59999999987633 22211 12222 1366788999999999
Q ss_pred CCCChhc-------cccccH-HHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCC---ccccc
Q 046427 254 MPLTPAT-------SKMFND-EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKD---SKLVL 322 (595)
Q Consensus 254 ~Plt~~t-------~~li~~-~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~---~~L~~ 322 (595)
+|...+- ..+... +.+..+++|.++|+.|.-.+=..+.+.+.+.+..+ +|.+|.+... +.++.
T Consensus 81 Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~~~ 154 (388)
T PRK15057 81 TPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDNLH 154 (388)
T ss_pred CCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCcccccccC
Confidence 9954211 111111 22334799999999999887677778877765433 2466655333 33454
Q ss_pred CCcEE
Q 046427 323 HENVT 327 (595)
Q Consensus 323 ~~nvi 327 (595)
.|.++
T Consensus 155 p~rvv 159 (388)
T PRK15057 155 PSRIV 159 (388)
T ss_pred CCEEE
Confidence 55663
No 114
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.23 E-value=2.8e-06 Score=89.36 Aligned_cols=91 Identities=23% Similarity=0.265 Sum_probs=69.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHc--------------CCcc-cCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARAT--------------GVGL-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~--------------g~~~-~~l~ell~~aD~V~l~~Pl 256 (595)
++|+|||+|.||..+|..+...|++|.+||+... .+...+. ++.. .++++++++||+|++|+|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 3799999999999999999999999999998752 2323332 2222 3678889999999999995
Q ss_pred ChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 257 TPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
..+..++. .....++++.++|+++.|-
T Consensus 82 -~~~~~v~~-~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 82 -QALREVLK-QLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred -HHHHHHHH-HHHhhcCCCCEEEEEeecc
Confidence 55666663 3445578899999997553
No 115
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.23 E-value=3.2e-06 Score=87.89 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=66.4
Q ss_pred eeeecCCEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||+++||| .|.+|+.+|.+|...|+.|.+|+.... ++++++++||+|+++++... ++.
T Consensus 153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~------------~l~e~~~~ADIVIsavg~~~----~v~ 216 (296)
T PRK14188 153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR------------DLPAVCRRADILVAAVGRPE----MVK 216 (296)
T ss_pred CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCChh----hcc
Confidence 4579999999999 999999999999999999999963221 47899999999999999543 444
Q ss_pred HHHHhcCCCceEEEeccCCc
Q 046427 266 DEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~ 285 (595)
... +|+|+++||+|--.
T Consensus 217 ~~~---lk~GavVIDvGin~ 233 (296)
T PRK14188 217 GDW---IKPGATVIDVGINR 233 (296)
T ss_pred hhe---ecCCCEEEEcCCcc
Confidence 433 89999999998544
No 116
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.20 E-value=1.9e-06 Score=68.43 Aligned_cols=65 Identities=25% Similarity=0.376 Sum_probs=55.0
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecC-CCcEEEEEEcCCCCcHHHHHHHhcCCC
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAP-QKQAVMTIGVDEEPSREVLKKIGETPA 586 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~-g~~al~vi~~d~~~~~e~l~~L~~~~~ 586 (595)
|.+.+..+|+||++++|+++|+++++||..+...+... .....+.+..+....+.++++|+++++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 45778899999999999999999999999999987665 445566677888888899999988764
No 117
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.15 E-value=1.5e-05 Score=78.95 Aligned_cols=116 Identities=21% Similarity=0.289 Sum_probs=92.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc-CHHHh---ccccCEEEEeCCCChhccccccHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV-SFEEA---ISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-~l~el---l~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
+++|.||||+||..+++++...|.+|++||.++ ..+.+...|...+ +++++ |..--+|-+.+|-.+-|..+|+.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~- 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDD- 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHH-
Confidence 478999999999999999999999999999987 4566677776543 66665 56678999999988667777643
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCC
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTE 311 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~ 311 (595)
.-..|.+|=++||-+-.---|...-.+.|.+..| ..+||-..
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi--~flD~GTS 121 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGI--HFLDVGTS 121 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCC--eEEeccCC
Confidence 4556899999999887666676667777888877 66787443
No 118
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.14 E-value=6e-06 Score=85.20 Aligned_cols=81 Identities=21% Similarity=0.278 Sum_probs=67.3
Q ss_pred ceeeecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||+++|||. |.+|+.+|.+|...|+.|..|.... .++.+.+++||+|+.+++.. +++
T Consensus 152 ~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVI~avg~~----~~v 215 (284)
T PRK14179 152 YNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT------------RNLAEVARKADILVVAIGRG----HFV 215 (284)
T ss_pred hCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEecCcc----ccC
Confidence 356899999999999 9999999999999999999994321 16889999999999999953 345
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
.... +|+|+++||+|--.
T Consensus 216 ~~~~---ik~GavVIDvgin~ 233 (284)
T PRK14179 216 TKEF---VKEGAVVIDVGMNR 233 (284)
T ss_pred CHHH---ccCCcEEEEeccee
Confidence 5543 79999999998544
No 119
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.14 E-value=6.6e-06 Score=84.12 Aligned_cols=100 Identities=14% Similarity=0.258 Sum_probs=72.4
Q ss_pred EEEEEeCChHHHHHHHHHhcCCC---EEEEECCCCcH-HHH-HHc-CCcc-cCHHHhccccCEEEEeCCCChhccccccH
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGM---NVIAHDPYAQA-DRA-RAT-GVGL-VSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~---~V~~~d~~~~~-~~a-~~~-g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
+|||||+|+||+++++.+...|. .+.+||++... +.. ... ++.. .+.++++++||+|++|+| ......++..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 79999999999999999987774 35788886532 222 223 3544 378889999999999999 4545555543
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
+ .++++.++|.+. ++ +..+.|.+.+..+
T Consensus 81 --l-~~~~~~~vis~~-ag-~~~~~l~~~~~~~ 108 (258)
T PRK06476 81 --L-RFRPGQTVISVI-AA-TDRAALLEWIGHD 108 (258)
T ss_pred --h-ccCCCCEEEEEC-CC-CCHHHHHHHhCCC
Confidence 3 257888999987 33 5788888887654
No 120
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.10 E-value=1.2e-05 Score=77.18 Aligned_cols=90 Identities=19% Similarity=0.306 Sum_probs=73.4
Q ss_pred eeecCCEEEEEeCChH-HHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 188 VSLVGKTLAVMGFGKV-GTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 188 ~~l~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
..+.||++.|||.|.+ |..+|+.|...|.+|...+++. .++.+.+++||+|+.+++.. +++..
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------~~l~~~l~~aDiVIsat~~~----~ii~~ 103 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------KNLKEHTKQADIVIVAVGKP----GLVKG 103 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------hhHHHHHhhCCEEEEcCCCC----ceecH
Confidence 3699999999999996 8889999999999999988752 25778999999999999842 26877
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeE
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~g 303 (595)
+. ++++.++||+|.-.-+| ..+|++.|
T Consensus 104 ~~---~~~~~viIDla~prdvd-------~~~~~~~G 130 (168)
T cd01080 104 DM---VKPGAVVIDVGINRVPD-------KSGGKLVG 130 (168)
T ss_pred HH---ccCCeEEEEccCCCccc-------ccCCCeeC
Confidence 64 58899999999877666 45566644
No 121
>PRK07680 late competence protein ComER; Validated
Probab=98.09 E-value=8.1e-06 Score=84.19 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=73.1
Q ss_pred EEEEEeCChHHHHHHHHHhcCC----CEEEEECCCCc-HHHHH-Hc-CCccc-CHHHhccccCEEEEeCCCChhcccccc
Q 046427 194 TLAVMGFGKVGTEVARRAKGLG----MNVIAHDPYAQ-ADRAR-AT-GVGLV-SFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~-~~~a~-~~-g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+|||||+|.||+.+++.+...| .+|.+||++.. .+... .. |+... +..+++.+||+|++|+| ......++.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl~ 80 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLLQ 80 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHHH
Confidence 6999999999999999998777 37999999752 22222 22 55443 78888999999999998 444555553
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHh
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALD 297 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~ 297 (595)
+....++++.++|+++-| +..+.|.+.+.
T Consensus 81 -~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 81 -KLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred -HHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 333457788899999854 36777766665
No 122
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.08 E-value=4.1e-05 Score=85.33 Aligned_cols=187 Identities=18% Similarity=0.205 Sum_probs=112.4
Q ss_pred CceEEEEcCCCCCCHHHHhccCCCceEEEEccccccccChhhHHhCCceEEeCCCCC--chHHHHHHHHHHH--HHHHch
Q 046427 93 LCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTAN--TIAAAEHGIALLT--AMARNI 168 (595)
Q Consensus 93 ~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~~--~~~vAE~~l~l~l--~~~R~i 168 (595)
++|+|+-- . +.+.+.++.++++--+|+...-..|.=-++++.++||.+..--... +++-.=.++.-|- +-.|-+
T Consensus 65 ~~diilkV-~-~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAGy~Av 142 (509)
T PRK09424 65 QSDIILKV-N-APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAGYRAV 142 (509)
T ss_pred cCCEEEEe-C-CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhHHHHH
Confidence 57877621 1 2344455655556677777666555545788889999887622211 0100001111111 112222
Q ss_pred HHHHHHHHcCccccccc-ceeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc--CH----
Q 046427 169 AQADASVKAGKWQRNKY-VGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV--SF---- 240 (595)
Q Consensus 169 ~~~~~~~~~g~W~~~~~-~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~--~l---- 240 (595)
..+.+. -++...... ......+.+|.|+|.|.+|...++.++.+|.+|+++|.+. ..+.++++|.+.+ +.
T Consensus 143 ~~aa~~--~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~ 220 (509)
T PRK09424 143 IEAAHE--FGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEG 220 (509)
T ss_pred HHHHHH--hcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEecccccc
Confidence 222111 122111000 0013568999999999999999999999999999999987 4567788887632 11
Q ss_pred ----------------------HHhccccCEEEEeCCCChh-ccccccHHHHhcCCCceEEEeccC
Q 046427 241 ----------------------EEAISTADFISLHMPLTPA-TSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 241 ----------------------~ell~~aD~V~l~~Plt~~-t~~li~~~~l~~mk~gailiN~ar 283 (595)
.+.++.+|+|+.|+..... .-.++.++.++.||+|.++++++=
T Consensus 221 ~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 221 GSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred ccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 1113569999998864221 234556888999999999999983
No 123
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.06 E-value=9.2e-06 Score=83.15 Aligned_cols=87 Identities=26% Similarity=0.424 Sum_probs=70.0
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECC-CC-cHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDP-YA-QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~-~~-~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
-|.||+|+|||||.-|.+=|..|+..|.+|++=-+ .. +.+.|.+.|++..+.+|+.++||+|.+-+|... -..++.+
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~-q~~vy~~ 93 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQ-QKEVYEK 93 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhh-HHHHHHH
Confidence 58999999999999999999999999999776433 33 467889999999999999999999999999543 3444444
Q ss_pred HHHhcCCCce
Q 046427 267 EAFFKMKKGV 276 (595)
Q Consensus 267 ~~l~~mk~ga 276 (595)
+.-..||+|+
T Consensus 94 ~I~p~Lk~G~ 103 (338)
T COG0059 94 EIAPNLKEGA 103 (338)
T ss_pred HhhhhhcCCc
Confidence 4445566665
No 124
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.05 E-value=2.5e-05 Score=77.98 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=62.3
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-HH-------cCC----cccCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-RA-------TGV----GLVSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~-------~g~----~~~~l~ell~~aD~V~l~~Plt~ 258 (595)
++|+||| .|.||+.+|+.+...|.+|.+++++... +.. .. .|+ ...+..+.+++||+|++|+|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~- 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD- 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence 3799997 9999999999999999999999886522 111 11 122 1236678899999999999943
Q ss_pred hccccccHHHHhcCCCceEEEeccCCc
Q 046427 259 ATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 259 ~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
....++. +.-..++ +.++|++.-|-
T Consensus 80 ~~~~~l~-~l~~~l~-~~vvI~~~ngi 104 (219)
T TIGR01915 80 HVLKTLE-SLRDELS-GKLVISPVVPL 104 (219)
T ss_pred HHHHHHH-HHHHhcc-CCEEEEeccCc
Confidence 3444442 2212243 57999997653
No 125
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.05 E-value=3.7e-05 Score=79.61 Aligned_cols=174 Identities=15% Similarity=0.174 Sum_probs=117.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-cCHHHhcc-ccCEEEEeCCCChhccccccHHHHh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL-VSFEEAIS-TADFISLHMPLTPATSKMFNDEAFF 270 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~-~aD~V~l~~Plt~~t~~li~~~~l~ 270 (595)
++|||||+|++|+-+|+.+...|..|+.+|+..-.+.+...|... ..+.++++ +.|+|.+|+-- ..+..++-.--++
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatypfq 131 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYPFQ 131 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcCch
Confidence 479999999999999999999999999999876555667777754 45777775 69999999863 3355555444567
Q ss_pred cCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHHHHHHHHH
Q 046427 271 KMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEA 350 (595)
Q Consensus 271 ~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~~~~~~~~ 350 (595)
++|.|++++++-.-+...-+++.+.|.+.--.=+.=-.|+++ ..++.+-.+|-|+.--.++ +. +...+-.|-
T Consensus 132 rlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPk--svnh~wqglpfVydkvRig-~~-----~~r~ercE~ 203 (480)
T KOG2380|consen 132 RLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPK--SVNHEWQGLPFVYDKVRIG-YA-----ASRPERCEF 203 (480)
T ss_pred hhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCC--cCCCccccCceEEEEeecc-cc-----ccchHHHHH
Confidence 799999999999988888888888887652111222234444 3455666677776655444 21 111333455
Q ss_pred HHHHHcCCCCCccccCCCCChhhhh
Q 046427 351 VIGALKGELAATAVNAPMVPAEVIS 375 (595)
Q Consensus 351 l~~~l~g~~~~~~vn~~~~~~~~~~ 375 (595)
+.+.+...+..-+......|+...+
T Consensus 204 fleIf~cegckmVemS~eeHDkiaA 228 (480)
T KOG2380|consen 204 FLEIFACEGCKMVEMSYEEHDKIAA 228 (480)
T ss_pred HHHHHHhcCCeEEEEEeeccccccc
Confidence 5566655555444444445554433
No 126
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.03 E-value=2.3e-05 Score=83.25 Aligned_cols=108 Identities=23% Similarity=0.309 Sum_probs=76.2
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-----------------cCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL-----------------VSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-----------------~~l~ell~~aD~V~l~~P 255 (595)
++|+|||.|.||+.+|..+...|.+|.+||+....+...+.|... .+-.+.++.+|+|++|+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~vk 82 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTVK 82 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEec
Confidence 479999999999999999999999999999854333333444321 122256789999999999
Q ss_pred CChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeE
Q 046427 256 LTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~g 303 (595)
. ++....+ ......++++.+++.+.- ++-..+.+.+.+...++..
T Consensus 83 ~-~~~~~~~-~~l~~~~~~~~iii~~~n-G~~~~~~l~~~~~~~~~~~ 127 (341)
T PRK08229 83 S-AATADAA-AALAGHARPGAVVVSFQN-GVRNADVLRAALPGATVLA 127 (341)
T ss_pred C-cchHHHH-HHHHhhCCCCCEEEEeCC-CCCcHHHHHHhCCCCcEEE
Confidence 5 4455555 334556788999998865 3445566777776655533
No 127
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=98.00 E-value=1.5e-05 Score=63.86 Aligned_cols=69 Identities=14% Similarity=0.338 Sum_probs=57.2
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC--CcHHHHHHHhcCCCcceE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE--PSREVLKKIGETPAIEEF 590 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~--~~~e~l~~L~~~~~v~~v 590 (595)
|+|.+...|+||+++.+++.|+++++||.++...+...++.+.+.+.++.. .-.+++++|+++++|.+|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 578889999999999999999999999999998654356677778777753 334788999999998876
No 128
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.99 E-value=3.7e-05 Score=79.58 Aligned_cols=107 Identities=14% Similarity=0.209 Sum_probs=74.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC----CEEEEECCCCcH--HHH-HHc-CCc-ccCHHHhccccCEEEEeCCCChhcccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG----MNVIAHDPYAQA--DRA-RAT-GVG-LVSFEEAISTADFISLHMPLTPATSKM 263 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~--~~a-~~~-g~~-~~~l~ell~~aD~V~l~~Plt~~t~~l 263 (595)
.+|+|||+|+||+++++.+...| .+|.+|+++... ... ... ++. ..+..+++++||+|++|+| ......+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence 47999999999999999998777 689999876422 111 222 233 2467888999999999999 4445544
Q ss_pred ccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeE
Q 046427 264 FNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~g 303 (595)
+. +....++++..||.+.-| +..+.|.+.+...++.-
T Consensus 81 l~-~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~~~vvR 117 (277)
T PRK06928 81 LK-DCAPVLTPDRHVVSIAAG--VSLDDLLEITPGLQVSR 117 (277)
T ss_pred HH-HHHhhcCCCCEEEEECCC--CCHHHHHHHcCCCCEEE
Confidence 42 233346778899998776 56667777775434433
No 129
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.95 E-value=1.2e-05 Score=73.59 Aligned_cols=106 Identities=25% Similarity=0.421 Sum_probs=60.7
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEE-CCCC-cHHHHHH-cC-CcccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAH-DPYA-QADRARA-TG-VGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~-d~~~-~~~~a~~-~g-~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
..+|||||.|++|..+++.|+..|++|.++ +++. +.+.+.. .+ ....+++++++++|++++++|... ...+. ++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda-I~~va-~~ 87 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA-IAEVA-EQ 87 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH-HHHHH-HH
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH-HHHHH-HH
Confidence 458999999999999999999999999886 4443 2222222 22 234578899999999999999653 44333 22
Q ss_pred HHhc--CCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 268 AFFK--MKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 268 ~l~~--mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
.-.. .++|.+++-|| |. ...+-|..+-+.|-+
T Consensus 88 La~~~~~~~g~iVvHtS-Ga-~~~~vL~p~~~~Ga~ 121 (127)
T PF10727_consen 88 LAQYGAWRPGQIVVHTS-GA-LGSDVLAPARERGAI 121 (127)
T ss_dssp HHCC--S-TT-EEEES--SS---GGGGHHHHHTT-E
T ss_pred HHHhccCCCCcEEEECC-CC-ChHHhhhhHHHCCCe
Confidence 2222 68999999996 22 233334444444443
No 130
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.94 E-value=3e-05 Score=76.18 Aligned_cols=88 Identities=24% Similarity=0.343 Sum_probs=64.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH---HHHHHcC--CcccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA---DRARATG--VGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~g--~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
++++|+|.|+||+.+|+++...|.+|+.-+++.+. ..+...+ ++..+.++..+.||+|++++|... ....+ ++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a-~~~v~-~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEA-IPDVL-AE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHH-HHhHH-HH
Confidence 58999999999999999999999999988655432 1223333 234578999999999999999644 33332 44
Q ss_pred HHhcCCCceEEEeccC
Q 046427 268 AFFKMKKGVRIVNVAR 283 (595)
Q Consensus 268 ~l~~mk~gailiN~ar 283 (595)
....+. |.++||+.-
T Consensus 80 l~~~~~-~KIvID~tn 94 (211)
T COG2085 80 LRDALG-GKIVIDATN 94 (211)
T ss_pred HHHHhC-CeEEEecCC
Confidence 444455 789998864
No 131
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=2.7e-05 Score=80.55 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=67.9
Q ss_pred eeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||.|. +|+.+|..|...|++|+.++.+. .++.+.+++||+|+.+++. .+++.
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVIsAvg~----p~~i~ 216 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------KDMASYLKDADVIVSAVGK----PGLVT 216 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHHhhCCEEEECCCC----CcccC
Confidence 4579999999999998 99999999999999999987642 2578899999999999984 34677
Q ss_pred HHHHhcCCCceEEEeccCCc
Q 046427 266 DEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~ 285 (595)
.+. +|+|+++||+|--.
T Consensus 217 ~~~---vk~gavVIDvGi~~ 233 (286)
T PRK14175 217 KDV---VKEGAVIIDVGNTP 233 (286)
T ss_pred HHH---cCCCcEEEEcCCCc
Confidence 754 69999999998543
No 132
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.90 E-value=3.1e-05 Score=73.31 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=69.2
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcC--------C------c-ccCHHHhccccCEEEEeCCCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATG--------V------G-LVSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g--------~------~-~~~l~ell~~aD~V~l~~Plt 257 (595)
+|+|+|.|+.|.++|..+...|.+|..|.+... .+...+.+ + . ..++++++++||+|++++|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs- 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS- 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence 589999999999999999999999999998752 12111111 1 1 12799999999999999994
Q ss_pred hhccccccHHHHhcCCCceEEEeccCCc----hhc-HHHHHHHHhcCCe
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVNVARGG----VVD-EEALVRALDSGII 301 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN~arg~----~vd-~~aL~~aL~~g~i 301 (595)
...+.++ ++....++++..+|++..|= ..- .+.+.+.+....+
T Consensus 80 ~~~~~~~-~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~ 127 (157)
T PF01210_consen 80 QAHREVL-EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRI 127 (157)
T ss_dssp GGHHHHH-HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGE
T ss_pred HHHHHHH-HHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcce
Confidence 3344444 33445578899999998763 222 3334444555444
No 133
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.89 E-value=4.4e-05 Score=74.38 Aligned_cols=134 Identities=22% Similarity=0.246 Sum_probs=72.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcC---------------------Ccc-cCHHHhccccCEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG---------------------VGL-VSFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g---------------------~~~-~~l~ell~~aD~V 250 (595)
++|+|||+|.+|..+|..+...|++|++||.+...-.....| ... .+..+.+++||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 589999999999999999999999999999765321111111 112 2577889999999
Q ss_pred EEeCCCChhcc-cccc--------HHHHhcCCCceEEEeccCCchhcHHHHH-HHHhcCCeeEEEEe-cCCCCCCCCC--
Q 046427 251 SLHMPLTPATS-KMFN--------DEAFFKMKKGVRIVNVARGGVVDEEALV-RALDSGIISQAALD-VFTEEPPAKD-- 317 (595)
Q Consensus 251 ~l~~Plt~~t~-~li~--------~~~l~~mk~gailiN~arg~~vd~~aL~-~aL~~g~i~ga~lD-v~~~EP~~~~-- 317 (595)
++|+| ||... +-.+ +.....++++.++|.-|.-.+=..+.+. ..|++..-.+.-.+ +|.+|=+...
T Consensus 81 ~I~Vp-TP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a 159 (185)
T PF03721_consen 81 FICVP-TPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRA 159 (185)
T ss_dssp EE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSH
T ss_pred EEecC-CCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCc
Confidence 99999 44322 1111 2344568999999999987765555333 33432211000001 1556644333
Q ss_pred -cccccCCcEE
Q 046427 318 -SKLVLHENVT 327 (595)
Q Consensus 318 -~~L~~~~nvi 327 (595)
..+...|++|
T Consensus 160 ~~d~~~~~rvV 170 (185)
T PF03721_consen 160 IEDFRNPPRVV 170 (185)
T ss_dssp HHHHHSSSEEE
T ss_pred chhccCCCEEE
Confidence 3456678884
No 134
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.89 E-value=0.00016 Score=76.92 Aligned_cols=140 Identities=22% Similarity=0.274 Sum_probs=91.3
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH--------------------HHHcC-Cccc-CHHHhccccCEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR--------------------ARATG-VGLV-SFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--------------------a~~~g-~~~~-~l~ell~~aD~V 250 (595)
.+|||||||-||..+|..+...|++|+|||-+...-. +.+.| .+.. +. +.++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~-~~l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDP-EELKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecCh-hhcccCCEE
Confidence 6899999999999999999999999999997642211 11122 1222 23 345599999
Q ss_pred EEeCCCChhccc-------ccc--HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC--CeeEEEEec---CCCCCCCC
Q 046427 251 SLHMPLTPATSK-------MFN--DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG--IISQAALDV---FTEEPPAK 316 (595)
Q Consensus 251 ~l~~Plt~~t~~-------li~--~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g--~i~ga~lDv---~~~EP~~~ 316 (595)
++|+| ||-+.+ +.+ +..-..||+|.++|==|....=.++.++..+.+. .+ ..+-|. |.+|-..+
T Consensus 89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL-~~~~Df~laysPERv~P 166 (436)
T COG0677 89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL-KFGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC-cccceeeEeeCccccCC
Confidence 99999 664442 111 1234469999999988876665677777665443 12 122343 45554333
Q ss_pred Cc---ccccCCcEEEcCCCCCCcHHHH
Q 046427 317 DS---KLVLHENVTVTPHLGASTTEAQ 340 (595)
Q Consensus 317 ~~---~L~~~~nvilTPHi~~~t~ea~ 340 (595)
.+ .+.++|+| +||.|.++-
T Consensus 167 G~~~~el~~~~kV-----IgG~tp~~~ 188 (436)
T COG0677 167 GNVLKELVNNPKV-----IGGVTPKCA 188 (436)
T ss_pred CchhhhhhcCCce-----eecCCHHHH
Confidence 33 45567888 789888764
No 135
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.88 E-value=5.9e-05 Score=63.99 Aligned_cols=67 Identities=31% Similarity=0.468 Sum_probs=56.6
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcC-CCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGL-GMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
..+.+++++|+|.|.+|+.+++.+..+ +.+|.+||+ |+++.|+|. .+.+.+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------di~i~~~~~----~~~~~~ 70 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------DILVTATPA----GVPVLE 70 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------CEEEEcCCC----CCCchH
Confidence 358899999999999999999999988 678999987 999999874 344555
Q ss_pred HHHhcCCCceEEEecc
Q 046427 267 EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 267 ~~l~~mk~gailiN~a 282 (595)
+....+++++++++++
T Consensus 71 ~~~~~~~~~~~v~~~a 86 (86)
T cd05191 71 EATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHhcCCCCEEEecC
Confidence 5677899999999975
No 136
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=97.88 E-value=4.2e-05 Score=84.54 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCCCEEEEECCCCcH-HHHHHc-----CCcc-cCHHHhccc---cCEEEEeCCCChhccccccHHHHhcC
Q 046427 203 VGTEVARRAKGLGMNVIAHDPYAQA-DRARAT-----GVGL-VSFEEAIST---ADFISLHMPLTPATSKMFNDEAFFKM 272 (595)
Q Consensus 203 IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~-----g~~~-~~l~ell~~---aD~V~l~~Plt~~t~~li~~~~l~~m 272 (595)
||+.+|++|...|++|.+||++... +...+. |+.. .+++++++. +|+|++|+|..+.+..++ ...+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 7999999999999999999998732 333332 3443 478888875 899999999988888888 4577889
Q ss_pred CCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCC
Q 046427 273 KKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEP 313 (595)
Q Consensus 273 k~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP 313 (595)
.+|.++||++....-+...+.+.+++..+.....=|++.++
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 99999999999888899999999988777444444566553
No 137
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.87 E-value=5.2e-05 Score=73.53 Aligned_cols=127 Identities=24% Similarity=0.302 Sum_probs=78.5
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-----------HHcC-------------Ccc-cCHHHhcccc
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-----------RATG-------------VGL-VSFEEAISTA 247 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~~l~ell~~a 247 (595)
+|+|||.|.||+.+|..+...|++|..||++... +.+ .+.| +.+ .+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6899999999999999999999999999987531 110 1111 112 3688888 99
Q ss_pred CEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHh-cCCeeEEEEecCCCCCCCCCcccccCCcE
Q 046427 248 DFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALD-SGIISQAALDVFTEEPPAKDSKLVLHENV 326 (595)
Q Consensus 248 D~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~-~g~i~ga~lDv~~~EP~~~~~~L~~~~nv 326 (595)
|+|+=++|..-+.+.-+-++.-+.++++++|...+.+ +....|...+. ..++ .++.-|. |+ ...||.+ +
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~p~R~--ig~Hf~~--P~-~~~~lVE---v 149 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSRPERF--IGMHFFN--PP-HLMPLVE---V 149 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSSTGGGE--EEEEE-S--ST-TT--EEE---E
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCcCceE--EEEeccc--cc-ccCceEE---E
Confidence 9999999987777766666666677888887766443 35555666653 2355 5666664 32 2356664 5
Q ss_pred EEcCC
Q 046427 327 TVTPH 331 (595)
Q Consensus 327 ilTPH 331 (595)
+-.|+
T Consensus 150 v~~~~ 154 (180)
T PF02737_consen 150 VPGPK 154 (180)
T ss_dssp EE-TT
T ss_pred eCCCC
Confidence 56665
No 138
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.86 E-value=2.6e-05 Score=72.03 Aligned_cols=93 Identities=23% Similarity=0.322 Sum_probs=68.7
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCE-EEEECCCCcH--HHHHHc---CCccc---CHHHhccccCEEEEeCCCChh
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMN-VIAHDPYAQA--DRARAT---GVGLV---SFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~~--~~a~~~---g~~~~---~l~ell~~aD~V~l~~Plt~~ 259 (595)
.++|+++.|||.|.+|+.++..|...|++ |..++|+... +.+... .+... ++.+.+.++|+|+.|+|...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~- 87 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM- 87 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS-
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC-
Confidence 68999999999999999999999999986 9999987632 223333 22233 46667899999999998543
Q ss_pred ccccccHHHHhcCCCce-EEEeccCC
Q 046427 260 TSKMFNDEAFFKMKKGV-RIVNVARG 284 (595)
Q Consensus 260 t~~li~~~~l~~mk~ga-iliN~arg 284 (595)
..+.++.+...++.. +++|.+.-
T Consensus 88 --~~i~~~~~~~~~~~~~~v~Dla~P 111 (135)
T PF01488_consen 88 --PIITEEMLKKASKKLRLVIDLAVP 111 (135)
T ss_dssp --TSSTHHHHTTTCHHCSEEEES-SS
T ss_pred --cccCHHHHHHHHhhhhceeccccC
Confidence 378888887665443 88888743
No 139
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.85 E-value=7.4e-05 Score=79.67 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCCCEEEEECCCCc------HHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCce
Q 046427 204 GTEVARRAKGLGMNVIAHDPYAQ------ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGV 276 (595)
Q Consensus 204 G~~vA~~l~~~G~~V~~~d~~~~------~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~ga 276 (595)
|..+|.++...|++|++||++.. .+...+.|+... +..+++++||+|++|+|....++.++. .....++++.
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~-~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAK-NILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHH-HHHhhCCCCC
Confidence 78999999999999999998753 123445677644 788899999999999996554677773 5667789999
Q ss_pred EEEeccCCchhcH-HHHHHHHh
Q 046427 277 RIVNVARGGVVDE-EALVRALD 297 (595)
Q Consensus 277 iliN~arg~~vd~-~aL~~aL~ 297 (595)
++||++.++.... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999887655 56666664
No 140
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.82 E-value=9.8e-06 Score=80.66 Aligned_cols=127 Identities=15% Similarity=0.202 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHH--hcCCCEEEE-ECCCCcHHHH
Q 046427 154 AEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRA--KGLGMNVIA-HDPYAQADRA 230 (595)
Q Consensus 154 AE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l--~~~G~~V~~-~d~~~~~~~a 230 (595)
++|.+..++...|++. .|. ..++++|||+|.+|+.+++.+ ...|+++++ +|+++.....
T Consensus 64 ~gy~v~~l~~~~~~~l---------~~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~ 125 (213)
T PRK05472 64 VGYNVEELLEFIEKIL---------GLD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGT 125 (213)
T ss_pred CCeeHHHHHHHHHHHh---------CCC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCC
Confidence 4578888888888765 222 235899999999999999863 367899887 5664321110
Q ss_pred HHcCCc---ccCHHHhccc--cCEEEEeCCCChh---ccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 231 RATGVG---LVSFEEAIST--ADFISLHMPLTPA---TSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 231 ~~~g~~---~~~l~ell~~--aD~V~l~~Plt~~---t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.-.|+. ..++.+++++ .|.+++|+|.... ...+.......-|....+.+|+.+|-+|+.++|..+|..
T Consensus 126 ~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 126 KIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred EeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 111221 2357788765 9999999997653 222222222344666778899999999999988888653
No 141
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.81 E-value=5.8e-05 Score=71.74 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=59.4
Q ss_pred ceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+. +|+.++..|...|+.|..++.+. .++++.+++||+|+.+++. .++|
T Consensus 30 ~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------~~l~~~~~~ADIVVsa~G~----~~~i 93 (160)
T PF02882_consen 30 YGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------KNLQEITRRADIVVSAVGK----PNLI 93 (160)
T ss_dssp TT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------SSHHHHHTTSSEEEE-SSS----TT-B
T ss_pred cCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------CcccceeeeccEEeeeecc----cccc
Confidence 35679999999999985 99999999999999999987643 2578899999999999973 4567
Q ss_pred cHHHHhcCCCceEEEeccCCch
Q 046427 265 NDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~ 286 (595)
..+ .+|+|+++||++.-..
T Consensus 94 ~~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 94 KAD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp -GG---GS-TTEEEEE--CEEE
T ss_pred ccc---cccCCcEEEecCCccc
Confidence 655 3699999999987654
No 142
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.79 E-value=7.2e-05 Score=77.00 Aligned_cols=103 Identities=14% Similarity=0.233 Sum_probs=67.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcC--CCEEE-EECCCCcH--HHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL--GMNVI-AHDPYAQA--DRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
.+|||||+|.||+.+++.+... ++++. +||++... ..+...+.. +.++++++.++|+|++|+|. .....+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~-~~~~~~--- 77 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV-NAVEEV--- 77 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh-HHHHHH---
Confidence 3799999999999999998864 57744 58887632 222334444 34799999999999999983 222222
Q ss_pred HHHhcCCCceEEEeccCCchhcH---HHHHHHHhcCC
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDE---EALVRALDSGI 300 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~---~aL~~aL~~g~ 300 (595)
....++.|.-++..+.|.+.|. +.|.++.+++.
T Consensus 78 -~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 78 -VPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred -HHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence 1223455666666777777653 35666555543
No 143
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.79 E-value=0.00011 Score=74.30 Aligned_cols=104 Identities=17% Similarity=0.281 Sum_probs=69.8
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCC---CE-EEEECCC-Cc-HH-HHHHcCCcc-cCHHHhccccCEEEEeCCCChhccc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLG---MN-VIAHDPY-AQ-AD-RARATGVGL-VSFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G---~~-V~~~d~~-~~-~~-~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
..++|||||.|++|+.+++.+...| .+ ++++++. .. .+ .....++.. .+++++++++|+|++|+|. ...+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHH
Confidence 3578999999999999999987655 33 7778764 22 22 223356543 4788999999999999994 33444
Q ss_pred cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
++.. .-..++ +.+||.++-| ++.+.|.+.+..+
T Consensus 82 v~~~-l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LLAE-LSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HHHH-HHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 4422 112234 5688888765 3555677777654
No 144
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.77 E-value=0.0001 Score=59.14 Aligned_cols=68 Identities=12% Similarity=0.275 Sum_probs=57.1
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC-CcHHHHHHHhcCCCcceEEE
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE-PSREVLKKIGETPAIEEFVF 592 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~-~~~e~l~~L~~~~~v~~v~~ 592 (595)
|.+..+|+||+++++.+.|.++++||.++...... ++.+.+.+.++.. ...+++++|++.++|..++.
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 3 LSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER-EGKARIYMELEGVGDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred EEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC-CCeEEEEEEEeccccHHHHHHHHhCCCCeEEEEe
Confidence 56778999999999999999999999999886443 4567777888876 55599999999999988765
No 145
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.75 E-value=7.1e-05 Score=82.02 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=68.9
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCCcH--HHHHHcCCcc---cCHHHhccccCEEEEeCCCChhccc
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYAQA--DRARATGVGL---VSFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~g~~~---~~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
.+.|++++|+|.|.||+.+++.++..| .+|+++|+.... ..+...|... .++.+.+.++|+|+.|++. +..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence 478999999999999999999999999 789999987632 2444555432 2567888999999999873 456
Q ss_pred cccHHHHhcCC----CceEEEeccC
Q 046427 263 MFNDEAFFKMK----KGVRIVNVAR 283 (595)
Q Consensus 263 li~~~~l~~mk----~gailiN~ar 283 (595)
+++.+.+..+. ...+++|.+.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 77877776542 2347777753
No 146
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.74 E-value=9.2e-05 Score=77.99 Aligned_cols=92 Identities=24% Similarity=0.293 Sum_probs=66.0
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCCc--HHHHHHcCCccc---CHHHhccccCEEEEeCCCChhcccc
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYAQ--ADRARATGVGLV---SFEEAISTADFISLHMPLTPATSKM 263 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~--~~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~~l 263 (595)
+.|++|+|||.|.||+.+++.++..| .+|+++|+... .+.+.+.|.... ++.+.+.++|+|+.|+|... ...+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~-~~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPH-YAKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCc-hHHH
Confidence 68999999999999999999999866 67999998763 244566665433 35677889999999999543 3222
Q ss_pred ccHHHHhcC-CCceEEEeccC
Q 046427 264 FNDEAFFKM-KKGVRIVNVAR 283 (595)
Q Consensus 264 i~~~~l~~m-k~gailiN~ar 283 (595)
+ +..++.. +++.+++|++.
T Consensus 255 ~-~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCC
Confidence 2 2223222 35678888874
No 147
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.73 E-value=0.00012 Score=71.38 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=69.9
Q ss_pred cccccccceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHH--HHcCCcc---cC----HHHhccccC
Q 046427 179 KWQRNKYVGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRA--RATGVGL---VS----FEEAISTAD 248 (595)
Q Consensus 179 ~W~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~g~~~---~~----l~ell~~aD 248 (595)
-|++....+.++.||++.|||-+. +|+.+|..|...|+.|..+|.+.-.... ....-.. .+ +.+.+++||
T Consensus 49 i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~AD 128 (197)
T cd01079 49 IYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSD 128 (197)
T ss_pred CcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCC
Confidence 344444457789999999999975 7999999999999999999743211000 0000000 12 789999999
Q ss_pred EEEEeCCCChhcccc-ccHHHHhcCCCceEEEeccC
Q 046427 249 FISLHMPLTPATSKM-FNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 249 ~V~l~~Plt~~t~~l-i~~~~l~~mk~gailiN~ar 283 (595)
+|+.+++. .++ +..+. .|+|+++||+|-
T Consensus 129 IVIsAvG~----~~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 129 VVITGVPS----PNYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred EEEEccCC----CCCccCHHH---cCCCcEEEEcCC
Confidence 99999984 345 77665 489999999983
No 148
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.72 E-value=0.0002 Score=73.39 Aligned_cols=104 Identities=23% Similarity=0.316 Sum_probs=78.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC----CEEEEECCCCc-H-HHHHHcCCc-ccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG----MNVIAHDPYAQ-A-DRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~-~-~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
++|||||+|+||++++..+...| .+|++.+|+.. . ..+.+.|+. ..+.+++..++|+|+|++. |+..
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq~~---- 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQDL---- 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hHhH----
Confidence 57999999999999999999888 68999999873 2 356677776 3467899999999999995 3221
Q ss_pred HHHHhcCC---CceEEEeccCCchhcHHHHHHHHhcCCeeEE
Q 046427 266 DEAFFKMK---KGVRIVNVARGGVVDEEALVRALDSGIISQA 304 (595)
Q Consensus 266 ~~~l~~mk---~gailiN~arg~~vd~~aL~~aL~~g~i~ga 304 (595)
.+.+..++ ++.+||.++-|- ..+.|.+++.+-++..+
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAGv--~~~~l~~~l~~~~vvR~ 115 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAGV--SIETLERLLGGLRVVRV 115 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCCC--CHHHHHHHcCCCceEEe
Confidence 33445555 688999998764 67777787764455443
No 149
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.71 E-value=0.00016 Score=75.38 Aligned_cols=108 Identities=19% Similarity=0.164 Sum_probs=74.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc--------------ccCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG--------------LVSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~--------------~~~l~ell~~aD~V~l~~Plt~ 258 (595)
++|+|+|.|.||..+|..|...|.+|..|++....+...+.|+. ..+.+++.+.+|+|++|+|. .
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~-~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA-Y 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-c
Confidence 36999999999999999999999999999982223333343431 12456667899999999994 3
Q ss_pred hccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeE
Q 046427 259 ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303 (595)
Q Consensus 259 ~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~g 303 (595)
++...+ +.....++++.+||.+.-| +-..+.+.+.+...++.+
T Consensus 80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~ 122 (305)
T PRK12921 80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLG 122 (305)
T ss_pred CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEE
Confidence 444444 2233345678888877554 445677777777666543
No 150
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.71 E-value=0.00012 Score=77.39 Aligned_cols=85 Identities=18% Similarity=0.243 Sum_probs=64.0
Q ss_pred EEEEeCChHHHHHHHHHhc-CCCEEEEE-CCCCcH--HHHHHcCCcc-------------------cCHHHhccccCEEE
Q 046427 195 LAVMGFGKVGTEVARRAKG-LGMNVIAH-DPYAQA--DRARATGVGL-------------------VSFEEAISTADFIS 251 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~~~~~--~~a~~~g~~~-------------------~~l~ell~~aD~V~ 251 (595)
|||+|||+||+.+++.+.. -++++++. |..+.. ..+..+|+.. -++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999999774 46898875 432221 2233333211 15899999999999
Q ss_pred EeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 252 LHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 252 l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.|+| .+.+..+++.+.+|+++++|+-.-
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence 9977 577889999999999999998754
No 151
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.71 E-value=9.6e-05 Score=81.13 Aligned_cols=91 Identities=20% Similarity=0.320 Sum_probs=66.5
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHcCCccc---CHHHhccccCEEEEeCCCChhccc
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARATGVGLV---SFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
.+.|++++|+|.|.||+.+++.++..|. +|+++++.... ..+...|.... ++.+.+.++|+|+.|+|. ...
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s---~~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGA---PHP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCC---CCc
Confidence 3789999999999999999999999997 79999987632 24455554332 456778899999999873 344
Q ss_pred cccHHHHhcC-----CCceEEEecc
Q 046427 263 MFNDEAFFKM-----KKGVRIVNVA 282 (595)
Q Consensus 263 li~~~~l~~m-----k~gailiN~a 282 (595)
++..+.++.+ +.+.+++|.+
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeC
Confidence 5666666543 2345666664
No 152
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.70 E-value=0.0001 Score=70.52 Aligned_cols=94 Identities=27% Similarity=0.385 Sum_probs=68.1
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCCc---c-------------------c-----CH
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVG---L-------------------V-----SF 240 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~---~-------------------~-----~l 240 (595)
.+...++.|+|.|+.|+.-++.++++|++|..+|.+... ......+.. . . .|
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 577789999999999999999999999999999987632 223333321 1 1 37
Q ss_pred HHhccccCEEEEeCCC-ChhccccccHHHHhcCCCceEEEecc
Q 046427 241 EEAISTADFISLHMPL-TPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 241 ~ell~~aD~V~l~~Pl-t~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.+.++.+|+|+.++-. ....-.++.++.++.||++.+|+|++
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 7889999999864432 44567889999999999999999996
No 153
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.69 E-value=0.00024 Score=66.06 Aligned_cols=81 Identities=23% Similarity=0.323 Sum_probs=67.8
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|+|-+ .+|+.+|..|...|+.|..++.+. .++++.+++||+|+.+++.. +++
T Consensus 22 ~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------------~~l~~~v~~ADIVvsAtg~~----~~i 85 (140)
T cd05212 22 EGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------------IQLQSKVHDADVVVVGSPKP----EKV 85 (140)
T ss_pred cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecCCC----Ccc
Confidence 3668999999999985 689999999999999999988542 16788999999999999853 567
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
+.+. +|+|++++|++...
T Consensus 86 ~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 PTEW---IKPGATVINCSPTK 103 (140)
T ss_pred CHHH---cCCCCEEEEcCCCc
Confidence 7655 69999999998654
No 154
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.69 E-value=9.4e-05 Score=57.25 Aligned_cols=46 Identities=13% Similarity=0.330 Sum_probs=42.0
Q ss_pred EEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC
Q 046427 525 LCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE 571 (595)
Q Consensus 525 iv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~ 571 (595)
-+..+|+||.++++++.|+++++||.+|.+++.. ++.+++.+.+|.
T Consensus 2 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~ 47 (56)
T cd04889 2 SVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSD 47 (56)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECC
Confidence 3578899999999999999999999999998775 789999999998
No 155
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.66 E-value=0.00033 Score=72.85 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=73.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCcc------------cCHHHhccccCEEEEeCCCChh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGL------------VSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~------------~~l~ell~~aD~V~l~~Plt~~ 259 (595)
++|+|||.|.||+.+|..|...|.+|..++++. ..+...+.|+.. .+..++ +.+|+|++++|. .+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-cc
Confidence 369999999999999999999999999999854 233333445421 245555 899999999994 34
Q ss_pred ccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeE
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ 303 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~g 303 (595)
+..++. .....+.+++.||.+.-| +-.++.+.+.+....+.+
T Consensus 79 ~~~~~~-~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~ 120 (304)
T PRK06522 79 LPAALP-SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG 120 (304)
T ss_pred HHHHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence 555443 233346677788877766 333566666676656544
No 156
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.65 E-value=0.00017 Score=73.95 Aligned_cols=121 Identities=19% Similarity=0.215 Sum_probs=76.9
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCC----CEEEEECCCCcHHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccccccH
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLG----MNVIAHDPYAQADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
..+|||||+|+||+++++.+...+ -+++++|++... .++.. .+..+++.+||+|++|+| ...+..++..
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~~ 76 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN-----TPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLLE 76 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc-----CCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 358999999999999999998665 359999886421 23322 367788899999999998 5556666653
Q ss_pred HHHhcCCCceEEEeccCCchhcHHHHHHHHhcC-CeeEEEEecCCCCCCCCCcccccCCcEEEcCC
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSG-IISQAALDVFTEEPPAKDSKLVLHENVTVTPH 331 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g-~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH 331 (595)
....++++.+|..++- +..+.+.+.+... ++. .+-.+- .-++..-.++++|.
T Consensus 77 -i~~~l~~~~iIS~~aG---i~~~~l~~~~~~~~~vv----r~mPn~-----p~~~g~g~t~i~~~ 129 (260)
T PTZ00431 77 -IKPYLGSKLLISICGG---LNLKTLEEMVGVEAKIV----RVMPNT-----PSLVGQGSLVFCAN 129 (260)
T ss_pred -HHhhccCCEEEEEeCC---ccHHHHHHHcCCCCeEE----EECCCc-----hhHhcceeEEEEeC
Confidence 2234556666555543 2455555555433 232 122222 23555667778875
No 157
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.64 E-value=0.00089 Score=67.36 Aligned_cols=130 Identities=22% Similarity=0.181 Sum_probs=89.9
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCC---EEEEECCC----CcH---------HHHHHcCCc-c-cCHHHhccccC
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGM---NVIAHDPY----AQA---------DRARATGVG-L-VSFEEAISTAD 248 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~---~V~~~d~~----~~~---------~~a~~~g~~-~-~~l~ell~~aD 248 (595)
+..+.++++.|+|.|.+|+.+|..+...|+ +|+.+|++ ... ..++..+.. . .++.+.++++|
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d 99 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD 99 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence 346888999999999999999999999997 49999987 221 122332211 1 36878889999
Q ss_pred EEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCC-eeEEEEecCCCCCCCCCcccccCCcEE
Q 046427 249 FISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGI-ISQAALDVFTEEPPAKDSKLVLHENVT 327 (595)
Q Consensus 249 ~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~-i~ga~lDv~~~EP~~~~~~L~~~~nvi 327 (595)
+|+-++| .++++.+.++.|+++.++...+. .. .|.-+.++.+.|. +..-|. +.+ ..+.-|++
T Consensus 100 vlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsn-P~-~e~~~~~A~~~ga~i~a~G~-----~~~-----~~Q~nn~~ 162 (226)
T cd05311 100 VFIGVSR-----PGVVKKEMIKKMAKDPIVFALAN-PV-PEIWPEEAKEAGADIVATGR-----SDF-----PNQVNNVL 162 (226)
T ss_pred EEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCC-CC-CcCCHHHHHHcCCcEEEeCC-----CCC-----ccccceee
Confidence 9999886 46788888999999999988883 32 3444444444454 444442 211 22456888
Q ss_pred EcCCCC
Q 046427 328 VTPHLG 333 (595)
Q Consensus 328 lTPHi~ 333 (595)
+-|-++
T Consensus 163 ~fPg~~ 168 (226)
T cd05311 163 GFPGIF 168 (226)
T ss_pred ecchhh
Confidence 888766
No 158
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.64 E-value=0.00014 Score=75.08 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=66.1
Q ss_pred eeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||-|. +|+.+|..|...|..|..++.+. .++.+.+++||+|+.+++. .+++.
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvi~avG~----p~~v~ 217 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------KNLRHHVRNADLLVVAVGK----PGFIP 217 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------CCHHHHHhhCCEEEEcCCC----ccccc
Confidence 5689999999999999 99999999999999999987542 2588999999999999963 23566
Q ss_pred HHHHhcCCCceEEEeccCC
Q 046427 266 DEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg 284 (595)
.+ .+|+|+++||+|--
T Consensus 218 ~~---~vk~gavVIDvGin 233 (285)
T PRK10792 218 GE---WIKPGAIVIDVGIN 233 (285)
T ss_pred HH---HcCCCcEEEEcccc
Confidence 54 46999999999843
No 159
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.64 E-value=0.00013 Score=75.36 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=67.7
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-| .+|+.+|..|...|+.|..++.+. .++.+.+++||+|+.+++ ..+++
T Consensus 151 ~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t------------~~l~~~~~~ADIvV~AvG----~p~~i 214 (285)
T PRK14191 151 YHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT------------KDLSFYTQNADIVCVGVG----KPDLI 214 (285)
T ss_pred hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc------------HHHHHHHHhCCEEEEecC----CCCcC
Confidence 3568999999999999 999999999999999999986432 146789999999999997 34567
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
..+.+ |+|+++||+|-..
T Consensus 215 ~~~~v---k~GavVIDvGi~~ 232 (285)
T PRK14191 215 KASMV---KKGAVVVDIGINR 232 (285)
T ss_pred CHHHc---CCCcEEEEeeccc
Confidence 77654 9999999998544
No 160
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.63 E-value=0.00014 Score=60.58 Aligned_cols=68 Identities=18% Similarity=0.394 Sum_probs=50.7
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCC---cHHHHHHHhcCCCcceEE
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEP---SREVLKKIGETPAIEEFV 591 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~---~~e~l~~L~~~~~v~~v~ 591 (595)
|-+...|+||+++.|++.++++++||.+++......++.+.+.+.++-.- =..++++|+++++|.+|+
T Consensus 9 l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 9 LRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 45678999999999999999999999999997654455666555444322 228999999999998875
No 161
>PRK08577 hypothetical protein; Provisional
Probab=97.63 E-value=0.0006 Score=63.07 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=60.4
Q ss_pred ccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcE--EEEEEcCCC-C-cHHHHHHHhcCCCcceEEEEeC
Q 046427 521 GSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQA--VMTIGVDEE-P-SREVLKKIGETPAIEEFVFLKL 595 (595)
Q Consensus 521 ~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~a--l~vi~~d~~-~-~~e~l~~L~~~~~v~~v~~i~~ 595 (595)
.+.|-+...|+||+++.|++.|+++++||.+++......++.+ .+.+++++. . -.+++++|+++++|.+|+++++
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~~~ 134 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIRQI 134 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEEEc
Confidence 4567788999999999999999999999999998655445544 444666664 2 3489999999999999998864
No 162
>PLN00203 glutamyl-tRNA reductase
Probab=97.63 E-value=0.00012 Score=82.14 Aligned_cols=91 Identities=14% Similarity=0.185 Sum_probs=67.6
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHc-CC--cc---cCHHHhccccCEEEEeCCCChh
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARAT-GV--GL---VSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~-g~--~~---~~l~ell~~aD~V~l~~Plt~~ 259 (595)
.+.+++|+|||.|.||+.+++.|...|. +|++++++... ..+... +. .. .++.+.+.+||+|+.|+| .
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence 4789999999999999999999999997 79999987632 222333 22 11 256778999999999987 3
Q ss_pred ccccccHHHHhcCCCc-------eEEEecc
Q 046427 260 TSKMFNDEAFFKMKKG-------VRIVNVA 282 (595)
Q Consensus 260 t~~li~~~~l~~mk~g-------ailiN~a 282 (595)
...++.++.++.++++ .++||.+
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence 4567888888776432 3666665
No 163
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.60 E-value=0.00013 Score=75.14 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=68.4
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|+|.+ ..|+.+|..+..+|..|..++.+. .++.+.+++||+|+.+++.. +++
T Consensus 146 ~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------~~L~~~~~~ADIvI~Avgk~----~lv 209 (279)
T PRK14178 146 YKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------ENLKAELRQADILVSAAGKA----GFI 209 (279)
T ss_pred cCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------hHHHHHHhhCCEEEECCCcc----ccc
Confidence 3568999999999999 999999999999999999887532 25889999999999999732 678
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
.++.+ |+|+++||+|-..
T Consensus 210 ~~~~v---k~GavVIDVgi~~ 227 (279)
T PRK14178 210 TPDMV---KPGATVIDVGINQ 227 (279)
T ss_pred CHHHc---CCCcEEEEeeccc
Confidence 87764 9999999998543
No 164
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.58 E-value=0.0002 Score=73.99 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=66.8
Q ss_pred ceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||.|. +|+.+|..|...|+.|..++... -++.+..++||+|+.++.. .+++
T Consensus 158 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvv~AvG~----p~~i 221 (287)
T PRK14176 158 YGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT------------DDLKKYTLDADILVVATGV----KHLI 221 (287)
T ss_pred cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC------------CCHHHHHhhCCEEEEccCC----cccc
Confidence 35689999999999999 99999999999999999987432 2578899999999998863 3467
Q ss_pred cHHHHhcCCCceEEEeccCC
Q 046427 265 NDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg 284 (595)
..+ .+|+|+++||+|--
T Consensus 222 ~~~---~vk~gavVIDvGin 238 (287)
T PRK14176 222 KAD---MVKEGAVIFDVGIT 238 (287)
T ss_pred CHH---HcCCCcEEEEeccc
Confidence 665 46999999999853
No 165
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.52 E-value=0.0019 Score=71.87 Aligned_cols=133 Identities=17% Similarity=0.125 Sum_probs=82.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcC--CCEEEEECCCCcHHHHHHcC--------------------Ccc-cCHHHhccccCE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL--GMNVIAHDPYAQADRARATG--------------------VGL-VSFEEAISTADF 249 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~~a~~~g--------------------~~~-~~l~ell~~aD~ 249 (595)
++|+|||+|.+|..+|..+... |++|++||.+...-.....| ... .++++.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999855 68999999764221111111 111 246678899999
Q ss_pred EEEeCCCChhcc------------cccc--HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe-cCCCCCC
Q 046427 250 ISLHMPLTPATS------------KMFN--DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD-VFTEEPP 314 (595)
Q Consensus 250 V~l~~Plt~~t~------------~li~--~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD-v~~~EP~ 314 (595)
+++|+| ||... ++.. +..-..++++.++|.-|...+=..+.+.+.+.+.. .|.-.. +|.+|=+
T Consensus 82 i~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl 159 (473)
T PLN02353 82 VFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFL 159 (473)
T ss_pred EEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCcc
Confidence 999997 44211 1211 22345679999999988766545566666665421 011111 2556654
Q ss_pred CCC---cccccCCcEE
Q 046427 315 AKD---SKLVLHENVT 327 (595)
Q Consensus 315 ~~~---~~L~~~~nvi 327 (595)
... +.++..|++|
T Consensus 160 ~~G~a~~d~~~p~riV 175 (473)
T PLN02353 160 AEGTAIEDLFKPDRVL 175 (473)
T ss_pred CCCCcccccCCCCEEE
Confidence 333 3455667775
No 166
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.51 E-value=0.0011 Score=68.55 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=66.8
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||-+ .+|+.+|..|...|..|..+..+. -++.+..++||+|+.+++. .+++.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T------------~nl~~~~~~ADIvI~AvGk----~~~i~ 215 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT------------ADLAGEVGRADILVAAIGK----AELVK 215 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCccC
Confidence 567999999999996 579999999999999999986532 2578899999999999983 46787
Q ss_pred HHHHhcCCCceEEEeccCCc
Q 046427 266 DEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~ 285 (595)
.+. .|+|+++||+|--.
T Consensus 216 ~~~---ik~gaiVIDvGin~ 232 (282)
T PRK14182 216 GAW---VKEGAVVIDVGMNR 232 (282)
T ss_pred HHH---cCCCCEEEEeecee
Confidence 766 48999999998544
No 167
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.51 E-value=0.00031 Score=72.95 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=66.0
Q ss_pred eeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|+|.|. .|+.+|..|...|.+|..+++.. .++.+.+++||+|+.+++ .+ +++.
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------~~L~~~~~~aDIvI~AtG-~~---~~v~ 217 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------QNLPELVKQADIIVGAVG-KP---ELIK 217 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------hhHHHHhccCCEEEEccC-CC---CcCC
Confidence 5689999999999998 99999999999999999988621 147778899999999997 33 2576
Q ss_pred HHHHhcCCCceEEEeccCCc
Q 046427 266 DEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~ 285 (595)
.+. +|+|++++|++-..
T Consensus 218 ~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 218 KDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred HHH---cCCCCEEEEEEEee
Confidence 644 69999999998543
No 168
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.50 E-value=0.00098 Score=70.84 Aligned_cols=98 Identities=22% Similarity=0.355 Sum_probs=71.2
Q ss_pred ceeeecCCEEEEEeC-ChHHHHHHHHHh-cCC-CEEEEECCCCcH--HHHHHcC-CcccCHHHhccccCEEEEeCCCChh
Q 046427 186 VGVSLVGKTLAVMGF-GKVGTEVARRAK-GLG-MNVIAHDPYAQA--DRARATG-VGLVSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 186 ~g~~l~gktvGIIGl-G~IG~~vA~~l~-~~G-~~V~~~d~~~~~--~~a~~~g-~~~~~l~ell~~aD~V~l~~Plt~~ 259 (595)
.+..+.||++.|+|. |.||+.+++.+. ..| .+++.+++.... ..+.+.+ ....++++.+.++|+|+.++-.
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~--- 225 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASM--- 225 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcC---
Confidence 355799999999999 899999999997 456 488899886421 1222332 2344788999999999877643
Q ss_pred ccc-cccHHHHhcCCCceEEEeccCCchhcH
Q 046427 260 TSK-MFNDEAFFKMKKGVRIVNVARGGVVDE 289 (595)
Q Consensus 260 t~~-li~~~~l~~mk~gailiN~arg~~vd~ 289 (595)
... .++.+. ++++++++|.|+-.=||.
T Consensus 226 ~~~~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 226 PKGVEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CcCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 234 377754 489999999998765553
No 169
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.49 E-value=0.03 Score=61.70 Aligned_cols=67 Identities=15% Similarity=0.252 Sum_probs=46.3
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcH---HHHHHHhcCCCcce
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSR---EVLKKIGETPAIEE 589 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~---e~l~~L~~~~~v~~ 589 (595)
+.|-+...|+||++++|+.+|++++|||..+..... .++.+-+++-++..-.. +++++|.+++.|..
T Consensus 349 yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~ 418 (426)
T PRK06349 349 YYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTHETSEAALRAALAAIEALDVVLG 418 (426)
T ss_pred EEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEEeCCHHHHHHHHHHHhcCccccc
Confidence 556666789999999999999999999998866433 22344444444432222 66677777777654
No 170
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.49 E-value=0.00032 Score=72.35 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=67.1
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+ .+|+.+|..|...|..|..++.+. -++.+..++||+|+.++.. .+++
T Consensus 151 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T------------~~l~~~~~~ADIvV~AvGk----p~~i 214 (281)
T PRK14183 151 YEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT------------KDLKAHTKKADIVIVGVGK----PNLI 214 (281)
T ss_pred cCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecCc----cccc
Confidence 3568999999999999 899999999999999999876432 1578899999999999973 4567
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
..+. .|+|+++||+|--.
T Consensus 215 ~~~~---vk~gavvIDvGin~ 232 (281)
T PRK14183 215 TEDM---VKEGAIVIDIGINR 232 (281)
T ss_pred CHHH---cCCCcEEEEeeccc
Confidence 7765 48999999998433
No 171
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.49 E-value=0.0021 Score=67.67 Aligned_cols=109 Identities=15% Similarity=0.165 Sum_probs=74.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc--------------cCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL--------------VSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~--------------~~l~ell~~aD~V~l~~Plt~ 258 (595)
++|+|||.|.||..+|.+|+..|.+|..+.+.. .+.....|... .+..+.+..+|+|++|+|..
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~- 83 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT- 83 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC-
Confidence 589999999999999999999999999988764 23333333211 11223467899999999954
Q ss_pred hccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEE
Q 046427 259 ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAA 305 (595)
Q Consensus 259 ~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~ 305 (595)
++...+. .....++++..++...-| +-.++.+.+.+...++.++.
T Consensus 84 ~~~~~~~-~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~ 128 (313)
T PRK06249 84 ANALLAP-LIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL 128 (313)
T ss_pred ChHhHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence 3444332 233346777788877554 44677788888777776553
No 172
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.48 E-value=0.00051 Score=57.85 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=59.3
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcC-CC--CcHHHHHHHhcCCCcceEEEEe
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVD-EE--PSREVLKKIGETPAIEEFVFLK 594 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d-~~--~~~e~l~~L~~~~~v~~v~~i~ 594 (595)
+++-+...|+||++++|+.+|...|+||..+.++..+..+-.=|.|.++ .. .=+++.++|.++..|.+|.-++
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~ 78 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYD 78 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEee
Confidence 5677788899999999999999999999999999887777776666664 32 2347888888898888887554
No 173
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.46 E-value=0.0016 Score=66.74 Aligned_cols=82 Identities=20% Similarity=0.322 Sum_probs=67.8
Q ss_pred ceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.+|+||++.|||-++ +|+.+|..|...++.|.++..+. -++.+..++||+|+.++- -.+++
T Consensus 150 ~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T------------~~l~~~~k~ADIvv~AvG----~p~~i 213 (283)
T COG0190 150 YGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT------------KDLASITKNADIVVVAVG----KPHFI 213 (283)
T ss_pred hCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC------------CCHHHHhhhCCEEEEecC----Ccccc
Confidence 35689999999999987 59999999999999999987543 257889999999999996 35677
Q ss_pred cHHHHhcCCCceEEEeccCCch
Q 046427 265 NDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~ 286 (595)
..+. .|+|+++||++--.+
T Consensus 214 ~~d~---vk~gavVIDVGinrv 232 (283)
T COG0190 214 KADM---VKPGAVVIDVGINRV 232 (283)
T ss_pred cccc---ccCCCEEEecCCccc
Confidence 6654 599999999985444
No 174
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.45 E-value=0.00036 Score=55.16 Aligned_cols=59 Identities=14% Similarity=0.304 Sum_probs=49.2
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcC
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGET 584 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~ 584 (595)
+-+..+|+||.++++.++|+++|+||.++..++....+.+...+.++. .+.+++.|++.
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~--~~~~~~~L~~~ 60 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED--IEKAIEVLQER 60 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC--HHHHHHHHHHC
Confidence 456789999999999999999999999998876654567888899987 66888888763
No 175
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=97.44 E-value=0.00071 Score=56.21 Aligned_cols=71 Identities=10% Similarity=0.164 Sum_probs=58.5
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC-CcHHHHHHHhcCCCcceEEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE-PSREVLKKIGETPAIEEFVF 592 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~-~~~e~l~~L~~~~~v~~v~~ 592 (595)
|.|-+.-.++||++.+|+.++...|.||..|.++..+.++..-+.+.++++ .-+.+.++|.++.+|.+|.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchHHHHHHHHhcCcCeEEEEE
Confidence 677788889999999999999999999999999987777777666666543 33378888888998888765
No 176
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.44 E-value=0.00041 Score=56.19 Aligned_cols=62 Identities=18% Similarity=0.335 Sum_probs=53.3
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcC
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGET 584 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~ 584 (595)
-+-+..+|+||.+.++...|+++++||.++...+....+.+.+++.++..-++++++.|++.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHC
Confidence 35577899999999999999999999999988776667788899999876666889988874
No 177
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.42 E-value=0.0016 Score=76.05 Aligned_cols=172 Identities=18% Similarity=0.210 Sum_probs=106.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-----------HHcC-------------Ccc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-----------RATG-------------VGL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~~l~ell~~ 246 (595)
++|+|||.|.||..||..+...|++|+.||..... +.+ .+.| ++. .++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 57999999999999999999999999999987521 111 1111 111 245 45799
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCCCCCCCCCcccccCCc
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFTEEPPAKDSKLVLHEN 325 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~n 325 (595)
||+|+=++|...+.+.-+-++.=..++++++|....++ +....|.+++.. .++ .+++-|.+-+ .-||.+
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~--~g~Hff~P~~---~~~lVE--- 462 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKRPENF--CGMHFFNPVH---RMPLVE--- 462 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCCccE--EEEecCCccc---ccceEE---
Confidence 99999999988888877766666778999888655433 355566666643 245 6666664332 245553
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 326 VTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 326 vilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
|+-.||.. .++++.+.+|++.-+-..++. ...+..+.+.+. ||+..|.+|
T Consensus 463 vv~g~~T~-----------~~~~~~~~~~~~~lgk~pv~v-~d~pGfv~nRi~~~~~~ea~~l 513 (715)
T PRK11730 463 VIRGEKTS-----------DETIATVVAYASKMGKTPIVV-NDCPGFFVNRVLFPYFAGFSQL 513 (715)
T ss_pred eeCCCCCC-----------HHHHHHHHHHHHHhCCceEEe-cCcCchhHHHHHHHHHHHHHHH
Confidence 45445432 233344444443332223322 234455565554 666555444
No 178
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.39 E-value=0.00064 Score=70.36 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=68.2
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+ .+|+.+|..|...|..|..++... .++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t------------~~l~~~~~~ADIvI~AvG~----p~~i 215 (284)
T PRK14190 152 YNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT------------KNLAELTKQADILIVAVGK----PKLI 215 (284)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCC----CCcC
Confidence 3568999999999995 589999999999999999886432 2588999999999999973 4578
Q ss_pred cHHHHhcCCCceEEEeccCCch
Q 046427 265 NDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~ 286 (595)
+.+.+ |+|+++||+|.-.+
T Consensus 216 ~~~~i---k~gavVIDvGi~~~ 234 (284)
T PRK14190 216 TADMV---KEGAVVIDVGVNRL 234 (284)
T ss_pred CHHHc---CCCCEEEEeecccc
Confidence 88765 89999999986553
No 179
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.38 E-value=0.00034 Score=56.90 Aligned_cols=69 Identities=16% Similarity=0.270 Sum_probs=52.7
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC---CCcHHHHHHHhcCCCcceEE
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE---EPSREVLKKIGETPAIEEFV 591 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~---~~~~e~l~~L~~~~~v~~v~ 591 (595)
.|-+...|+||.++.+++.|+++++||.+|.......++.+.+.+.++. ..-++++++|+++++|.++.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~ 73 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVP 73 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCc
Confidence 4556778999999999999999999999998754333366766665543 22337899999999987754
No 180
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.38 E-value=0.0031 Score=66.07 Aligned_cols=173 Identities=22% Similarity=0.193 Sum_probs=104.0
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-H-----------HHHHcCC-------------cc-cCHHHhcc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-D-----------RARATGV-------------GL-VSFEEAIS 245 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~-----------~a~~~g~-------------~~-~~l~ell~ 245 (595)
-+++||||.|.||+.+|..+...|+.|..+|++... + ...+.|- .. .++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 378999999999999999999877999999987411 1 1111121 00 1222 689
Q ss_pred ccCEEEEeCCCChhccccccHHHHhcCCCceEEE-eccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCC
Q 046427 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIV-NVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHE 324 (595)
Q Consensus 246 ~aD~V~l~~Plt~~t~~li~~~~l~~mk~gaili-N~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~ 324 (595)
+||+|+=++|-.-+.++-+-++.=...+|+++|- |+|+ +...++.++++.- =...|++-|.+-|+ =||.
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~rp-er~iG~HFfNP~~~---m~LV--- 151 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALKRP-ERFIGLHFFNPVPL---MPLV--- 151 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhCCc-hhEEEEeccCCCCc---ceeE---
Confidence 9999999999888877776666666688998885 4443 3556666776333 22477777765433 2444
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 325 NVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 325 nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
-+|-+.+.+ .++++.+.+|.+.-.-..++. -..+-..++.+- ||+..|.++
T Consensus 152 EvI~g~~T~-----------~e~~~~~~~~~~~igK~~vv~-~D~pGFi~NRil~~~~~eA~~l 203 (307)
T COG1250 152 EVIRGEKTS-----------DETVERVVEFAKKIGKTPVVV-KDVPGFIVNRLLAALLNEAIRL 203 (307)
T ss_pred EEecCCCCC-----------HHHHHHHHHHHHHcCCCCEee-cCCCceehHhHHHHHHHHHHHH
Confidence 354444421 344555666654422111221 122233344333 666666555
No 181
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.38 E-value=0.00078 Score=69.63 Aligned_cols=81 Identities=21% Similarity=0.321 Sum_probs=67.4
Q ss_pred ceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+.... .++.+.+++||+|+.+++. .+++
T Consensus 151 ~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----~~~i 214 (284)
T PRK14170 151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT------------KDLPQVAKEADILVVATGL----AKFV 214 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 46789999999999965 79999999999999999886532 2588999999999999983 4567
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
..+. .|+|+++||+|--.
T Consensus 215 ~~~~---vk~GavVIDvGin~ 232 (284)
T PRK14170 215 KKDY---IKPGAIVIDVGMDR 232 (284)
T ss_pred CHHH---cCCCCEEEEccCcc
Confidence 7765 48999999998544
No 182
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.37 E-value=0.00069 Score=56.24 Aligned_cols=70 Identities=4% Similarity=0.130 Sum_probs=54.6
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEc--CCCCcHHHHHHHhcCCCcceEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGV--DEEPSREVLKKIGETPAIEEFV 591 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~--d~~~~~e~l~~L~~~~~v~~v~ 591 (595)
|++.+..+|+||++.+|+.++...|+||..+.++..+..+..-+.+.+ |+..-+.+.++|.++..|.+|.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~ 74 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVN 74 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEE
Confidence 677788899999999999999999999999999976666655444443 3333347788888888887765
No 183
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.36 E-value=0.00069 Score=59.87 Aligned_cols=78 Identities=24% Similarity=0.296 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHH----cCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceE
Q 046427 203 VGTEVARRAKGLGMNVIAHDPYAQADRARA----TGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVR 277 (595)
Q Consensus 203 IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~----~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gai 277 (595)
-+..+++.|+..|++|.+|||+........ .+++.. ++++.++.+|+|+++++ .++-..+--......|+++.+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~~~~~~~~~~~~~~ 96 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATD-HDEFRELDWEEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSEE
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEec-CHHHhccCHHHHHHhcCCCCE
Confidence 356789999999999999999986655544 456655 79999999999999998 555555433445567889999
Q ss_pred EEec
Q 046427 278 IVNV 281 (595)
Q Consensus 278 liN~ 281 (595)
|+|+
T Consensus 97 iiD~ 100 (106)
T PF03720_consen 97 IIDG 100 (106)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9997
No 184
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.36 E-value=0.00092 Score=57.72 Aligned_cols=75 Identities=13% Similarity=0.183 Sum_probs=59.1
Q ss_pred cCccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC-CCcHHHHHHHhcCCCcceEEEE
Q 046427 519 LEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE-EPSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 519 ~~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~-~~~~e~l~~L~~~~~v~~v~~i 593 (595)
...++|-+...|+||++++|+.+++..|+||.++.++..+..+-.=|.+.+.+ ..=+++.++|.++..|.+|..+
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~~i~Qi~kQL~KLidVikV~~l 81 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRLEQMISQIEKLEDVLKVRRN 81 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcCchHHHHHHHHHhCCcCEEEEEEC
Confidence 34578888889999999999999999999999999998777776655555553 2233777788888888887654
No 185
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.36 E-value=0.0017 Score=76.04 Aligned_cols=172 Identities=13% Similarity=0.147 Sum_probs=105.8
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-----------HHcC-------------Ccc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-----------RATG-------------VGL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~~l~ell~~ 246 (595)
++|+|||.|.||+.+|..+...|++|+.||+.... +.. .+.| ++. .+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 57999999999999999999999999999986521 110 1111 111 2454 5799
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCCCCCCCCCcccccCCc
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFTEEPPAKDSKLVLHEN 325 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~n 325 (595)
||+|+=++|...+.+.-+-++.=+.++++++|....+ -++..+|...+.. .++ .+++-|.+- ..-||.+
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~p~r~--ig~Hff~P~---~~m~LvE--- 484 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTS--ALPIKDIAAVSSRPEKV--IGMHYFSPV---DKMQLLE--- 484 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCCccce--EEEeccCCc---ccCceEE---
Confidence 9999999998888887776666677899988764322 2456666666644 344 677766532 2245653
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 326 VTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 326 vilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
|+-+|+.+ . ++++.+.+|++..+-..++- ...+..+.+.+. ||+..|.+|
T Consensus 485 vv~g~~Ts---~--------~~~~~~~~~~~~lgk~pv~v-~d~pGFi~NRi~~~~~~ea~~l 535 (737)
T TIGR02441 485 IITHDGTS---K--------DTLASAVAVGLKQGKVVIVV-KDGPGFYTTRCLGPMLAEVIRL 535 (737)
T ss_pred EeCCCCCC---H--------HHHHHHHHHHHHCCCeEEEE-CCcCCchHHHHHHHHHHHHHHH
Confidence 55555532 2 23333444443322222222 233444555444 777666655
No 186
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.35 E-value=0.00081 Score=71.31 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=63.7
Q ss_pred CCEEEEEeCChHHHHHHHHHhc-C-CCEEEEECCCCcH-HH-H---HHcCCc---ccCHHHhccccCEEEEeCCCChhcc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKG-L-GMNVIAHDPYAQA-DR-A---RATGVG---LVSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~-~-G~~V~~~d~~~~~-~~-a---~~~g~~---~~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
-+++||||+|.+|+..++.+.. + .-+|.+||++... +. + .+.|+. ..+.++++++||+|++|+|. ..
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s---~~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPS---RK 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCC---CC
Confidence 4789999999999997776653 2 3589999998632 21 1 234532 34799999999999999984 34
Q ss_pred ccccHHHHhcCCCceEEEeccCC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg 284 (595)
-++..+. +|||+.+..++..
T Consensus 205 P~~~~~~---l~~g~~v~~vGs~ 224 (325)
T TIGR02371 205 PVVKADW---VSEGTHINAIGAD 224 (325)
T ss_pred cEecHHH---cCCCCEEEecCCC
Confidence 5665543 6999999999853
No 187
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.35 E-value=0.00051 Score=55.11 Aligned_cols=58 Identities=14% Similarity=0.311 Sum_probs=46.3
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcC
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGET 584 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~ 584 (595)
-+.+..+|+||.+++|+++|+++|+||.++.++.... .+.+.+.+|. ++.+.+.|++.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~--~~~~~~~L~~~ 60 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE--FGILRLIVSD--PDKAKEALKEA 60 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECC--HHHHHHHHHHC
Confidence 3567889999999999999999999999999876433 4788888855 45777777653
No 188
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.33 E-value=0.00067 Score=70.59 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=67.8
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+ .+|+.+|..|...|+.|..+.... .++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 215 (297)
T PRK14186 152 QQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT------------QDLASITREADILVAAAGR----PNLI 215 (297)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 3568999999999996 579999999999999999886432 2688999999999999983 3577
Q ss_pred cHHHHhcCCCceEEEeccCCch
Q 046427 265 NDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~ 286 (595)
..+. .|+|+++||+|--.+
T Consensus 216 ~~~~---ik~gavVIDvGin~~ 234 (297)
T PRK14186 216 GAEM---VKPGAVVVDVGIHRL 234 (297)
T ss_pred CHHH---cCCCCEEEEeccccc
Confidence 7765 589999999986553
No 189
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.33 E-value=0.00072 Score=70.04 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=67.9
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+ .+|+.+|..|...|..|..+.... .++.+..++||+|+.++.. .+++
T Consensus 149 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 212 (287)
T PRK14173 149 YGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT------------QDLPAVTRRADVLVVAVGR----PHLI 212 (287)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 3568999999999995 589999999999999999886532 1588999999999999973 4677
Q ss_pred cHHHHhcCCCceEEEeccCCch
Q 046427 265 NDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~~ 286 (595)
..+.+ |+|+++||+|--.+
T Consensus 213 ~~~~v---k~GavVIDVGin~~ 231 (287)
T PRK14173 213 TPEMV---RPGAVVVDVGINRV 231 (287)
T ss_pred CHHHc---CCCCEEEEccCccc
Confidence 77654 89999999986553
No 190
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.33 E-value=0.001 Score=54.39 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=53.8
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcC--CCC-c-HHHHHHHhcCCCcceEEEE
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVD--EEP-S-REVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d--~~~-~-~e~l~~L~~~~~v~~v~~i 593 (595)
.|.+...|+||.++.|.+.|+++++||..++..+.. ++.+-+.+.++ +.. . .+++++|+++++|.+|+++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~-~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPI-HGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCC-CCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 366788999999999999999999999999875322 33454554443 332 1 4899999999999999875
No 191
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.32 E-value=0.0021 Score=74.95 Aligned_cols=172 Identities=14% Similarity=0.130 Sum_probs=104.7
Q ss_pred CEEEEEeCChHHHHHHHHHh-cCCCEEEEECCCCcH-HHH-----------HHcC-------------Cccc-CHHHhcc
Q 046427 193 KTLAVMGFGKVGTEVARRAK-GLGMNVIAHDPYAQA-DRA-----------RATG-------------VGLV-SFEEAIS 245 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~~-~l~ell~ 245 (595)
++|+|||.|.||+.+|..+. ..|++|..||++... +.+ .+.| ++.. ++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 57999999999999999887 589999999987521 111 1111 1122 45 4679
Q ss_pred ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCCCCCCCCCcccccCC
Q 046427 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFTEEPPAKDSKLVLHE 324 (595)
Q Consensus 246 ~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~ 324 (595)
+||+|+=++|...+.+.-+-++.=+.++++++|....++ +...+|.++++. .++ .+++-|.+- ..-||.+
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~--~g~HffnP~---~~~~lVE-- 454 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASRPENV--IGLHYFSPV---EKMPLVE-- 454 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcccE--EEEecCCcc---ccCceEE--
Confidence 999999999988888777766666678888877654433 345556666543 355 666666432 2345553
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 325 NVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 325 nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
|+-+|+.. .++++.+.+|++.-+-.+++-. ..+..+.+.+. ||+..|.++
T Consensus 455 -vv~g~~T~-----------~~~~~~~~~~~~~~gk~pv~v~-d~pGfi~nRl~~~~~~Ea~~l 505 (699)
T TIGR02440 455 -VIPHAGTS-----------EQTIATTVALAKKQGKTPIVVA-DKAGFYVNRILAPYMNEAARL 505 (699)
T ss_pred -EeCCCCCC-----------HHHHHHHHHHHHHcCCeEEEEc-cccchHHHHHHHHHHHHHHHH
Confidence 55555432 3344445555544333333222 33445555444 666665554
No 192
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.32 E-value=0.00076 Score=69.69 Aligned_cols=78 Identities=15% Similarity=0.265 Sum_probs=66.0
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||-+ .+|+.+|..|...|+.|..++... .++.+..++||+|+.+++. .+++.
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T------------~~l~~~~~~ADIvIsAvGk----~~~i~ 217 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT------------QNLPSIVRQADIIVGAVGK----PEFIK 217 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEeCCC----cCccC
Confidence 568999999999995 589999999999999999987532 2578899999999999983 45677
Q ss_pred HHHHhcCCCceEEEeccC
Q 046427 266 DEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 266 ~~~l~~mk~gailiN~ar 283 (595)
.+. .|+|+++||+|-
T Consensus 218 ~~~---ik~gavVIDvGi 232 (284)
T PRK14177 218 ADW---ISEGAVLLDAGY 232 (284)
T ss_pred HHH---cCCCCEEEEecC
Confidence 765 489999999984
No 193
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.31 E-value=0.00075 Score=69.73 Aligned_cols=81 Identities=16% Similarity=0.293 Sum_probs=67.0
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+ .+|+.+|..|...|..|..+.... .+|.+..++||+|+.+++. .+++
T Consensus 150 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----p~~i 213 (282)
T PRK14169 150 YDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT------------RNLKQLTKEADILVVAVGV----PHFI 213 (282)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 3568999999999996 579999999999999999886432 2588999999999999983 4568
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
..+. .|+|+++||+|--.
T Consensus 214 ~~~~---vk~GavVIDvGin~ 231 (282)
T PRK14169 214 GADA---VKPGAVVIDVGISR 231 (282)
T ss_pred CHHH---cCCCcEEEEeeccc
Confidence 7765 58999999998543
No 194
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.29 E-value=0.00091 Score=67.33 Aligned_cols=106 Identities=23% Similarity=0.311 Sum_probs=64.6
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEE-CC-------CC-cHHH---H-HHcC-------CcccCHHHhc-cc
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH-DP-------YA-QADR---A-RATG-------VGLVSFEEAI-ST 246 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~-d~-------~~-~~~~---a-~~~g-------~~~~~l~ell-~~ 246 (595)
.++.|+++.|.|+|.+|+.+|+.|..+|++|++. |. .- +.+. . .+.| ...++.++++ .+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~ 106 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD 106 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence 4689999999999999999999999999999953 43 21 1111 1 1122 1122333333 36
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
||+++-|.+ .+.|+.+...+++ =.+|+-.+-+.+ . ....+.|++..+
T Consensus 107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi 153 (227)
T cd01076 107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGV 153 (227)
T ss_pred ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCC
Confidence 788877774 3456666666665 334455555554 3 333455555544
No 195
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.29 E-value=0.0032 Score=73.64 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=107.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHH-----------HHcC-------------Ccc-cCHHHhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRA-----------RATG-------------VGL-VSFEEAIST 246 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~~l~ell~~ 246 (595)
++|+|||.|.||..+|..+...|++|..||++... +.+ .+.| ++. .++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 47999999999999999999999999999987521 111 1111 111 134 45799
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCCCCCCCCCcccccCCc
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFTEEPPAKDSKLVLHEN 325 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~n 325 (595)
||+|+=++|...+.+.-+-++.=+.++++++|-...++ ++..++...++. .++ .++.-|.+-+ .-||.+
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~p~r~--ig~Hff~P~~---~~~lvE--- 462 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKRPENF--CGMHFFNPVH---RMPLVE--- 462 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCcccE--EEEecCCCcc---cCceEe---
Confidence 99999999988887777766666678999888655433 455666666643 345 6666665332 346653
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 326 VTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 326 vilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
||-+++.+ .++.+.+.+|++.-+-.+++.. ..+..+.+.+. ||+.-|.+|
T Consensus 463 vv~g~~Ts-----------~~~~~~~~~~~~~lgk~pv~v~-d~pGfi~NRl~~~~~~ea~~l 513 (714)
T TIGR02437 463 VIRGEKSS-----------DETIATVVAYASKMGKTPIVVN-DCPGFFVNRVLFPYFGGFSKL 513 (714)
T ss_pred ecCCCCCC-----------HHHHHHHHHHHHHcCCEEEEeC-CcccchHHHHHHHHHHHHHHH
Confidence 44444432 3344455555543332333222 44556666555 777666655
No 196
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.28 E-value=0.00082 Score=69.29 Aligned_cols=79 Identities=22% Similarity=0.353 Sum_probs=66.2
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||-+ .+|+.+|..|...|+.|..++... .++.+..++||+|+.+++. .+++.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------------~~l~~~~~~ADIvIsAvGk----p~~i~ 216 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------------KNLKEVCKKADILVVAIGR----PKFID 216 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCccC
Confidence 558999999999996 579999999999999999987532 2588999999999999983 45687
Q ss_pred HHHHhcCCCceEEEeccCC
Q 046427 266 DEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg 284 (595)
.+. .|+|+++||+|--
T Consensus 217 ~~~---ik~gavVIDvGin 232 (278)
T PRK14172 217 EEY---VKEGAIVIDVGTS 232 (278)
T ss_pred HHH---cCCCcEEEEeecc
Confidence 766 5899999999743
No 197
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.27 E-value=0.00069 Score=70.19 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=52.7
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCCcH--HHHHHcC----Ccc-cCHHHhccccCEEEEeCCCC
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYAQA--DRARATG----VGL-VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~g----~~~-~~l~ell~~aD~V~l~~Plt 257 (595)
..+.+|++.|+|.|.+|++++..|...| .+|.+++++... ..+...+ +.. .++.+.+.++|+|+.++|..
T Consensus 119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 3578899999999999999999999999 689999997532 1222222 111 23457778999999999864
No 198
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.27 E-value=0.00085 Score=69.35 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=66.5
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+ .+|+.+|..|...|..|..++.+. .++.+..++||+|+.++.- .+++
T Consensus 151 y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------------~nl~~~~~~ADIvIsAvGk----p~~i 214 (282)
T PRK14166 151 YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAGC----VNLL 214 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 3568999999999996 579999999999999999887532 2588999999999999983 4578
Q ss_pred cHHHHhcCCCceEEEeccC
Q 046427 265 NDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~ar 283 (595)
..+. .|+|+++||+|-
T Consensus 215 ~~~~---vk~GavVIDvGi 230 (282)
T PRK14166 215 RSDM---VKEGVIVVDVGI 230 (282)
T ss_pred CHHH---cCCCCEEEEecc
Confidence 7765 589999999984
No 199
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.26 E-value=0.0012 Score=69.77 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=59.4
Q ss_pred cCCEEEEEeCChHHHHHHHHHhc-CC-CEEEEECCCCcH--HHHHH---cC--Ccc-cCHHHhccccCEEEEeCCCChhc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKG-LG-MNVIAHDPYAQA--DRARA---TG--VGL-VSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~--~~a~~---~g--~~~-~~l~ell~~aD~V~l~~Plt~~t 260 (595)
..++++|||+|.+|+.+++.+.. ++ .+|.+||++... ..+.+ .| +.. .++++++++||+|+.++|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 46799999999999999986553 45 689999997632 22222 14 333 37889999999998888743
Q ss_pred cccccHHHHhcCCCceEEEec
Q 046427 261 SKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ 281 (595)
..++..+ .+++|+ +||+
T Consensus 201 ~pvl~~~---~l~~g~-~i~~ 217 (314)
T PRK06141 201 EPLVRGE---WLKPGT-HLDL 217 (314)
T ss_pred CCEecHH---HcCCCC-EEEe
Confidence 4556553 468998 4554
No 200
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.25 E-value=0.0023 Score=62.50 Aligned_cols=97 Identities=24% Similarity=0.162 Sum_probs=64.9
Q ss_pred eeeecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCcH-H-HHHHc----CCc-----cc---CHHHhccccCEEE
Q 046427 187 GVSLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQA-D-RARAT----GVG-----LV---SFEEAISTADFIS 251 (595)
Q Consensus 187 g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~-~-~a~~~----g~~-----~~---~l~ell~~aD~V~ 251 (595)
|..+.++++.|+|- |.+|+.+++.+...|.+|..++++... + ..... +.. .. ++.+.++++|+|+
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 44678999999995 999999999999999999999886521 1 11111 221 11 2457788999999
Q ss_pred EeCCCChhccccccHHHHhcCCCceEEEeccCCchh
Q 046427 252 LHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287 (595)
Q Consensus 252 l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~v 287 (595)
.++|....+ .+... ...+++.+++|+.+..-+
T Consensus 103 ~at~~g~~~--~~~~~--~~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 103 AAGAAGVEL--LEKLA--WAPKPLAVAADVNAVPPV 134 (194)
T ss_pred ECCCCCcee--chhhh--cccCceeEEEEccCCCCC
Confidence 998854421 11111 124557788888776654
No 201
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.25 E-value=0.00092 Score=69.42 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=67.3
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+ .+|+.+|..|...|+.|..++.+. .++.+.+++||+|+.+++. .+++
T Consensus 154 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------------~~l~~~~~~ADIvVsAvGk----p~~i 217 (294)
T PRK14187 154 ITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------------RDLADYCSKADILVAAVGI----PNFV 217 (294)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 3568999999999996 579999999999999999987532 2588999999999999983 4567
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
..+.+ |+|+++||+|--.
T Consensus 218 ~~~~i---k~gaiVIDVGin~ 235 (294)
T PRK14187 218 KYSWI---KKGAIVIDVGINS 235 (294)
T ss_pred CHHHc---CCCCEEEEecccc
Confidence 77664 8999999998543
No 202
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.24 E-value=0.00095 Score=68.98 Aligned_cols=79 Identities=16% Similarity=0.300 Sum_probs=66.0
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+ .+|+.+|..|...|..|..++.+. .++.+..++||+|+.+++. .+++
T Consensus 152 y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T------------~dl~~~~k~ADIvIsAvGk----p~~i 215 (282)
T PRK14180 152 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------TDLKSHTTKADILIVAVGK----PNFI 215 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC------------CCHHHHhhhcCEEEEccCC----cCcC
Confidence 3568999999999996 589999999999999999986532 2678889999999999983 4567
Q ss_pred cHHHHhcCCCceEEEeccC
Q 046427 265 NDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~ar 283 (595)
..+. .|+|+++||+|-
T Consensus 216 ~~~~---vk~gavVIDvGi 231 (282)
T PRK14180 216 TADM---VKEGAVVIDVGI 231 (282)
T ss_pred CHHH---cCCCcEEEEecc
Confidence 7765 589999999984
No 203
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.20 E-value=0.0011 Score=69.01 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=67.5
Q ss_pred ceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -++.+.+++||+|+.++.. .+++
T Consensus 161 ~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T------------~nl~~~~~~ADIvv~AvGk----~~~i 224 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT------------PDPESIVREADIVIAAAGQ----AMMI 224 (299)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 35689999999999965 79999999999999999986532 2588999999999999974 3688
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
..+. .|+|+++||+|--.
T Consensus 225 ~~~~---vk~gavVIDvGin~ 242 (299)
T PLN02516 225 KGDW---IKPGAAVIDVGTNA 242 (299)
T ss_pred CHHH---cCCCCEEEEeeccc
Confidence 7766 48999999998544
No 204
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.19 E-value=0.0011 Score=68.64 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=65.6
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||-+ .+|+.+|..|...|+.|..++... .+|.+..++||+|+.++.. .+++.
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T------------~~L~~~~~~ADIvV~AvGk----p~~i~ 217 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT------------HNLSSITSKADIVVAAIGS----PLKLT 217 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----CCccC
Confidence 557999999999996 579999999999999999876432 2588999999999999983 36787
Q ss_pred HHHHhcCCCceEEEeccC
Q 046427 266 DEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 266 ~~~l~~mk~gailiN~ar 283 (595)
.+. .|+|+++||+|-
T Consensus 218 ~~~---vk~GavVIDvGi 232 (288)
T PRK14171 218 AEY---FNPESIVIDVGI 232 (288)
T ss_pred HHH---cCCCCEEEEeec
Confidence 765 489999999984
No 205
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.19 E-value=0.0012 Score=68.23 Aligned_cols=111 Identities=19% Similarity=0.280 Sum_probs=81.8
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhc--CCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKG--LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
.+.++.||++.|||-+ .+|+.+|..|.. .++.|..+.... .++.+.+++||+|+.+++. .+
T Consensus 152 ~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T------------~~l~~~~k~ADIvV~AvGk----p~ 215 (284)
T PRK14193 152 YDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT------------RDLAAHTRRADIIVAAAGV----AH 215 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC------------CCHHHHHHhCCEEEEecCC----cC
Confidence 3568999999999985 589999999987 789999886532 2688999999999999984 35
Q ss_pred cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcH
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTT 337 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ 337 (595)
++..+. .|+|+++||+|--.+ .+|++.| ||- .+ ..+... .+||--||--.
T Consensus 216 ~i~~~~---ik~GavVIDvGin~~----------~~gkl~G---Dvd-~~-------v~~~a~-~iTPVPGGVGp 265 (284)
T PRK14193 216 LVTADM---VKPGAAVLDVGVSRA----------GDGKLVG---DVH-PD-------VWEVAG-AVSPNPGGVGP 265 (284)
T ss_pred ccCHHH---cCCCCEEEEcccccc----------CCCcEEe---ecC-Hh-------HHhhCC-EEeCCCCChhH
Confidence 787765 489999999986543 3456643 554 22 122233 38998777644
No 206
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.17 E-value=0.0012 Score=70.14 Aligned_cols=80 Identities=23% Similarity=0.214 Sum_probs=66.7
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN 265 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~ 265 (595)
+.++.||++.|||-+ .+|+.+|..|...+..|..+.... .++.+.+++||+|+.++.. .+++.
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T------------~nl~~~~r~ADIVIsAvGk----p~~i~ 289 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITREADIIISAVGQ----PNMVR 289 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcCC
Confidence 568999999999996 579999999999999999986432 2688999999999999973 45787
Q ss_pred HHHHhcCCCceEEEeccCCc
Q 046427 266 DEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~ 285 (595)
.+. .|+|+++||+|--.
T Consensus 290 ~d~---vK~GAvVIDVGIn~ 306 (364)
T PLN02616 290 GSW---IKPGAVVIDVGINP 306 (364)
T ss_pred HHH---cCCCCEEEeccccc
Confidence 766 48999999998433
No 207
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.16 E-value=0.00078 Score=69.52 Aligned_cols=92 Identities=32% Similarity=0.381 Sum_probs=71.1
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHH-HHH-HcCCc----c---cCHHHhccccCEEEEeC--CCCh
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD-RAR-ATGVG----L---VSFEEAISTADFISLHM--PLTP 258 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~-~~g~~----~---~~l~ell~~aD~V~l~~--Plt~ 258 (595)
+...++.|||.|-+|..-|+.+.++|.+|...|.+..+- ... ..+.+ + ..+++.+.++|+|+-++ |- .
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg-a 244 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG-A 244 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC-C
Confidence 566689999999999999999999999999999875321 111 12222 1 24889999999998664 42 3
Q ss_pred hccccccHHHHhcCCCceEEEecc
Q 046427 259 ATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 259 ~t~~li~~~~l~~mk~gailiN~a 282 (595)
..-.++.++.+++||||++|||++
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEE
Confidence 456778888999999999999997
No 208
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.15 E-value=0.0014 Score=53.83 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=52.8
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCC-cHHHHHHHhcCCCcceEEEEeC
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEP-SREVLKKIGETPAIEEFVFLKL 595 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~-~~e~l~~L~~~~~v~~v~~i~~ 595 (595)
|-+...|++|+++.|++.+++.++||.+++.... +. -.+.+++.+.- =..++++|+++++|.+|.-+++
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~--~~-i~l~i~v~~~~~L~~li~~L~~i~gV~~V~R~~~ 72 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK--GR-IYLNFPTIEFEKLQTLMPEIRRIDGVEDVKTVPY 72 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC--Ce-EEEEeEecCHHHHHHHHHHHhCCCCceEEEEeec
Confidence 5577889999999999999999999999999543 32 22234443322 2489999999999999987753
No 209
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.14 E-value=0.0014 Score=67.84 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=65.9
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhcC----CCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKGL----GMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
+.++.||++.|||-+ .+|+.+|..|... +..|..+.... .++.+.+++||+|+.+++. .
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T------------~~l~~~~~~ADIvV~AvG~----p 211 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS------------ENLTEILKTADIIIAAIGV----P 211 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----c
Confidence 568999999999996 4799999999877 78999876432 2588999999999999983 3
Q ss_pred ccccHHHHhcCCCceEEEeccCCc
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~ 285 (595)
+++..+. .|+|+++||+|--.
T Consensus 212 ~~i~~~~---ik~GavVIDvGin~ 232 (287)
T PRK14181 212 LFIKEEM---IAEKAVIVDVGTSR 232 (287)
T ss_pred CccCHHH---cCCCCEEEEecccc
Confidence 5787766 48999999998544
No 210
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.14 E-value=0.0013 Score=69.03 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=65.0
Q ss_pred cCCEEEEEeCChHHHHHHHHHhc-CCC-EEEEECCCCcH--HHHHHc---CCc--ccCHHHhccccCEEEEeCCCChhcc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKG-LGM-NVIAHDPYAQA--DRARAT---GVG--LVSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~--~~a~~~---g~~--~~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
..++++|||.|.+|+..++.+.. ++. +|.+||++... ..+.+. ++. ..++++++++||+|+.|+|.+ .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence 46799999999999999999863 664 79999997632 222222 332 237899999999999999853 4
Q ss_pred ccccHHHHhcCCCceEEEeccCC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg 284 (595)
-++.. .+|||+.|+.+|.-
T Consensus 201 Pl~~~----~~~~g~hi~~iGs~ 219 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGAF 219 (304)
T ss_pred ceeCc----cCCCCCEEEecCCC
Confidence 56654 26999999999853
No 211
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.13 E-value=0.0014 Score=71.03 Aligned_cols=91 Identities=26% Similarity=0.360 Sum_probs=67.1
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCCc--HHHHHHcCCcccC---HHHhccccCEEEEeCCCChhccc
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYAQ--ADRARATGVGLVS---FEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~--~~~a~~~g~~~~~---l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
.|+++++.|||.|.||.-+|+.|...| .+|+..+|... .+.+.+.|...++ +.+.+.++|+|+.++. ....
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 389999999999999999999999999 57888898763 3457788876654 5567899999999965 3455
Q ss_pred cccHHHHhcC-C--CceEEEecc
Q 046427 263 MFNDEAFFKM-K--KGVRIVNVA 282 (595)
Q Consensus 263 li~~~~l~~m-k--~gailiN~a 282 (595)
++..+.+... + +.-++||.+
T Consensus 252 ii~~~~ve~a~~~r~~~livDia 274 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIA 274 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEec
Confidence 5655544322 1 114666665
No 212
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.12 E-value=0.0014 Score=69.29 Aligned_cols=81 Identities=19% Similarity=0.288 Sum_probs=67.0
Q ss_pred ceeeecCCEEEEEeCCh-HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccc
Q 046427 186 VGVSLVGKTLAVMGFGK-VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li 264 (595)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+..+. -++.+..++||+|+.+++. .+++
T Consensus 208 ~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T------------~nl~~~~~~ADIvIsAvGk----p~~v 271 (345)
T PLN02897 208 SGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT------------KDPEQITRKADIVIAAAGI----PNLV 271 (345)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 35689999999999965 79999999999999999886432 2578899999999999983 4568
Q ss_pred cHHHHhcCCCceEEEeccCCc
Q 046427 265 NDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~arg~ 285 (595)
..+. .|+|+++||+|--.
T Consensus 272 ~~d~---vk~GavVIDVGin~ 289 (345)
T PLN02897 272 RGSW---LKPGAVVIDVGTTP 289 (345)
T ss_pred CHHH---cCCCCEEEEccccc
Confidence 7765 48999999998543
No 213
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.09 E-value=0.0016 Score=61.74 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=56.3
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC--CcHHHHHHHhcCCCcceEEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE--PSREVLKKIGETPAIEEFVF 592 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~--~~~e~l~~L~~~~~v~~v~~ 592 (595)
|.|.+...|+||++++|+.+|.++|+||.++.++..+..+...+.+.++.. .-+.+.++|.++-.|.+|..
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~ 74 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSD 74 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEe
Confidence 567788999999999999999999999999999987656677777777662 22256677777777777654
No 214
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=97.09 E-value=0.0014 Score=62.25 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=57.7
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC--CcHHHHHHHhcCCCcceEEEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE--PSREVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~--~~~e~l~~L~~~~~v~~v~~i 593 (595)
|.+-+...|+||++++|+.+|+++|+||.++.++..+..+...+.+.++.. .=+.+.++|.++..|.+|..+
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~ 76 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDL 76 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEec
Confidence 677788999999999999999999999999999877655667677776643 334777788888888877643
No 215
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.011 Score=62.90 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=110.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc--HHHHHHcC----C-cccCHHHh---ccccCEEEEeCCCChhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ--ADRARATG----V-GLVSFEEA---ISTADFISLHMPLTPATSK 262 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~g----~-~~~~l~el---l~~aD~V~l~~Plt~~t~~ 262 (595)
..||+||||.||+.+|..+...|++|.+|+|... .+..++.+ + ...+++|+ ++.=--|++.+---.-...
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 4699999999999999999999999999999863 23223222 1 12366665 5566677777643211133
Q ss_pred cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHH
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEG 342 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~ 342 (595)
.| ++.+..|-+|=++||-+-.---|+..-.++|.+..|...|.-|.+.|-- -+ .-|-+ +-+-+.|+++.
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeG----A~-~GPSi-----MpGG~~eay~~ 152 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEG----AR-HGPSI-----MPGGQKEAYEL 152 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccc----cc-cCCCc-----CCCCCHHHHHH
Confidence 33 4567789999999999988888988889999999888899999988832 12 23554 55778899887
Q ss_pred HHHHHHHHHHHHHcCCC
Q 046427 343 VAIEIAEAVIGALKGEL 359 (595)
Q Consensus 343 ~~~~~~~~l~~~l~g~~ 359 (595)
++ -+.+.|.+-..|++
T Consensus 153 v~-pil~~IaAk~~g~p 168 (473)
T COG0362 153 VA-PILTKIAAKVDGEP 168 (473)
T ss_pred HH-HHHHHHHhhcCCCC
Confidence 74 45666666555543
No 216
>PRK00194 hypothetical protein; Validated
Probab=97.05 E-value=0.00071 Score=57.70 Aligned_cols=66 Identities=24% Similarity=0.228 Sum_probs=47.9
Q ss_pred ccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEE--EEEcCC-CCcH-HHHHHHhcCCCcc
Q 046427 521 GSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVM--TIGVDE-EPSR-EVLKKIGETPAIE 588 (595)
Q Consensus 521 ~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~--vi~~d~-~~~~-e~l~~L~~~~~v~ 588 (595)
.+.+.+..+|+||+++.|++.|+++|+||..++... .++...+ .++++. +.+. ++.++|.++....
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~ 72 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI--MDGYFTMIMLVDISESKKDFAELKEELEELGKEL 72 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh--hCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHc
Confidence 356778899999999999999999999999998865 3456666 445554 3334 4556666655443
No 217
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.05 E-value=0.0074 Score=61.65 Aligned_cols=108 Identities=17% Similarity=0.171 Sum_probs=73.3
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEE--------CCCC-cHHHH------H-Hc------------CCccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--------DPYA-QADRA------R-AT------------GVGLV 238 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~--------d~~~-~~~~a------~-~~------------g~~~~ 238 (595)
+.++.|+|+.|.|+|++|+.+|+.|..+|++|++. |+.- +.+.. + +. +.+.+
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 35799999999999999999999999999999953 3331 11100 0 11 12334
Q ss_pred CHHHhc-cccCEEEEeCCCChhccccccHHHHhcCC--CceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 239 SFEEAI-STADFISLHMPLTPATSKMFNDEAFFKMK--KGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 239 ~l~ell-~~aD~V~l~~Plt~~t~~li~~~~l~~mk--~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
+-++++ .+||+++-|. +.+.|+.+....++ +-.+|+-.+-+++-. + ..+.|.+..|
T Consensus 113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~-~-a~~~L~~rGI 171 (254)
T cd05313 113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA-E-AIEVFRQAGV 171 (254)
T ss_pred CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH-H-HHHHHHHCCc
Confidence 455554 3799998885 67889998888774 345777777777644 3 3455555554
No 218
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=97.04 E-value=0.0016 Score=60.94 Aligned_cols=66 Identities=14% Similarity=0.305 Sum_probs=58.3
Q ss_pred EecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhcCCCcceEEE
Q 046427 527 RQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFVF 592 (595)
Q Consensus 527 ~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~~~~v~~v~~ 592 (595)
.-.+.||+++.|.+.++++||+|........+-.+++...+-+++++|.+++.+|+++++|+.+..
T Consensus 101 ~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~iP~~li~el~~i~gVk~i~I 166 (167)
T COG2150 101 EDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERPIPGDLIDELKKIDGVKKISI 166 (167)
T ss_pred ccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEeccCCHHHHHHHhcccCceeEEe
Confidence 356789999999999999999999877665557788999999999999999999999999998753
No 219
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=97.04 E-value=0.002 Score=51.57 Aligned_cols=61 Identities=18% Similarity=0.376 Sum_probs=49.3
Q ss_pred CCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC--CcHHHHHHHhcCCCcceE
Q 046427 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE--PSREVLKKIGETPAIEEF 590 (595)
Q Consensus 530 D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~--~~~e~l~~L~~~~~v~~v 590 (595)
|+||++.+|..++...|+||..|.++..+..+..-+.+.+++. .-+.+..+|.++.+|.+|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 6899999999999999999999999997777777777776663 334888999999888765
No 220
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.02 E-value=0.002 Score=67.93 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=67.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CCEEEE-ECCCCcHHHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccHHHH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GMNVIA-HDPYAQADRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFNDEAF 269 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l 269 (595)
.+|||||+|+||+.+++.+... ++++.+ ||++.........++. ..+.++++.+.|+|++|+|... . -....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~t--h---~~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSAT--D---IPEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCcc--C---HHHHH
Confidence 4899999999999999999765 799886 6876422222223332 2367788899999999999533 2 12333
Q ss_pred hcCCCceEEEeccCC--chhc-HHHHHHHHhc-CCee
Q 046427 270 FKMKKGVRIVNVARG--GVVD-EEALVRALDS-GIIS 302 (595)
Q Consensus 270 ~~mk~gailiN~arg--~~vd-~~aL~~aL~~-g~i~ 302 (595)
..|+.|.-+|+..-- .+-+ .+.+-++-++ |++.
T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 446677777777521 1112 3445555563 6663
No 221
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.00 E-value=0.0091 Score=69.88 Aligned_cols=172 Identities=16% Similarity=0.138 Sum_probs=105.2
Q ss_pred CEEEEEeCChHHHHHHHHHh-cCCCEEEEECCCCc-HHHH-----------HHcC-------------Ccc-cCHHHhcc
Q 046427 193 KTLAVMGFGKVGTEVARRAK-GLGMNVIAHDPYAQ-ADRA-----------RATG-------------VGL-VSFEEAIS 245 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~-~~~a-----------~~~g-------------~~~-~~l~ell~ 245 (595)
++|+|||.|.||..+|..+. ..|++|..||+... .+.+ .+.| ++. .++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 88999999998642 1111 1111 111 134 4679
Q ss_pred ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCCCCCCCCCcccccCC
Q 046427 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFTEEPPAKDSKLVLHE 324 (595)
Q Consensus 246 ~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~ 324 (595)
+||+|+=++|...+.+.-+-++.=+.++|+++|.....+ +....|.+.+.. .++ .+++-|.+- ..-||.+
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~--ig~Hff~P~---~~~~lVE-- 459 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAARPEQV--IGLHYFSPV---EKMPLVE-- 459 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCcccce--EEEecCCcc---ccCceEE--
Confidence 999999999988888777766666678999988765443 355566666543 355 666666432 2235553
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chhHHHHHH
Q 046427 325 NVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA-PFVTLAEKL 387 (595)
Q Consensus 325 nvilTPHi~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~~~~~~~~~~~-p~~~la~rl 387 (595)
|+-.|+. + .++++.+.+|++..+...++- ...+..+.+.+. ||+..|.+|
T Consensus 460 -vv~g~~T--s---------~~~~~~~~~~~~~~gk~pv~v-~d~pGfi~nRl~~~~~~EA~~l 510 (708)
T PRK11154 460 -VIPHAKT--S---------AETIATTVALAKKQGKTPIVV-RDGAGFYVNRILAPYINEAARL 510 (708)
T ss_pred -EECCCCC--C---------HHHHHHHHHHHHHcCCceEEE-eccCcHHHHHHHHHHHHHHHHH
Confidence 4444442 2 233444444444333222222 123344555444 666666555
No 222
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.00 E-value=0.0023 Score=66.50 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=64.9
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhcC----CCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKGL----GMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
+.++.||++.|||-+ .+|+.+|..|... +..|..+.... .++.+..++||+|+.+++. .
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~nl~~~~~~ADIvIsAvGk----p 215 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS------------KNLKKECLEADIIIAALGQ----P 215 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC------------CCHHHHHhhCCEEEEccCC----c
Confidence 567999999999996 5799999999865 68898875432 2688899999999999983 4
Q ss_pred ccccHHHHhcCCCceEEEeccCCc
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~ 285 (595)
+++..+. .|+|+++||+|--.
T Consensus 216 ~~i~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 216 EFVKADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred CccCHHH---cCCCCEEEEecCcc
Confidence 5677655 58999999998543
No 223
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.98 E-value=0.00068 Score=59.58 Aligned_cols=86 Identities=26% Similarity=0.298 Sum_probs=58.4
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc--cCHHHhccccCEEEEeCCCChhccccccH
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL--VSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~--~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
.++|+++.|||.|.+|..=++.+...|.+|.++++.. + ..+..++. -.+++.+..+|+|+.+++... +++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~--~-~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~-----~n~ 75 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI--E-FSEGLIQLIRREFEEDLDGADLVFAATDDPE-----LNE 75 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE--H-HHHTSCEEEESS-GGGCTTESEEEE-SS-HH-----HHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch--h-hhhhHHHHHhhhHHHHHhhheEEEecCCCHH-----HHH
Confidence 6899999999999999999999999999999999875 1 11222322 245677899999998886432 234
Q ss_pred HHHhcCCCceEEEecc
Q 046427 267 EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 267 ~~l~~mk~gailiN~a 282 (595)
......+.-.+++|++
T Consensus 76 ~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 76 AIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHTTSEEEET
T ss_pred HHHHHHhhCCEEEEEC
Confidence 4444455455788875
No 224
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.97 E-value=0.0035 Score=64.59 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=68.4
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH--HHHHHc---C-CcccCHHHh-ccccCEEEEeCCCC--hhc
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA--DRARAT---G-VGLVSFEEA-ISTADFISLHMPLT--PAT 260 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~---g-~~~~~l~el-l~~aD~V~l~~Plt--~~t 260 (595)
..+|+++|+|.|.+|++++..+...|.+|.++|++... +.+... + ....++++. +.++|+|+.|+|.. ++.
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 56789999999999999999999999999999987522 222221 2 122345443 35899999999974 222
Q ss_pred cc-cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 261 SK-MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 261 ~~-li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.. .+. ...++++.+++|+.-... ++ .|.++.++
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~ 228 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKS 228 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHH
Confidence 11 122 234688888888876554 33 34444333
No 225
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.97 E-value=0.0025 Score=69.82 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=57.5
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCc--HHHHHHcC-Cccc---CHHHhccccCEEEEeCCCChhcc
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQ--ADRARATG-VGLV---SFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~--~~~a~~~g-~~~~---~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
.+.|+++.|||.|.+|+.+|+.|...|. +++++++... ...+...+ .... ++.+++.+||+|+.|++. ..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a---~~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV---LE 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC---CC
Confidence 4789999999999999999999999985 7999998753 23334444 3332 456779999999999874 34
Q ss_pred ccccHHH
Q 046427 262 KMFNDEA 268 (595)
Q Consensus 262 ~li~~~~ 268 (595)
.+|..+.
T Consensus 255 ~vi~~~~ 261 (414)
T PRK13940 255 YIVTCKY 261 (414)
T ss_pred eeECHHH
Confidence 4555444
No 226
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.97 E-value=0.0017 Score=69.25 Aligned_cols=90 Identities=22% Similarity=0.310 Sum_probs=63.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHc---------CC------cc-cCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARAT---------GV------GL-VSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~---------g~------~~-~~l~ell~~aD~V~l~~P 255 (595)
++|+|||.|.+|..+|..+...| .|..|.++... +...+. +. .. .++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 57999999999999999999888 67777654321 111111 11 11 267788999999999999
Q ss_pred CChhccccccHHHHhcCCCceEEEeccCCc
Q 046427 256 LTPATSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 256 lt~~t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
...++..+.. ....++++..+|++..|=
T Consensus 87 -s~~~~~vl~~-i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 87 -SHGFRGVLTE-LAKELRPWVPVVSLVKGL 114 (341)
T ss_pred -HHHHHHHHHH-HHhhcCCCCEEEEEEeCC
Confidence 4445555533 334578888899998853
No 227
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.96 E-value=0.0032 Score=66.18 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=70.5
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHHHHHc---------C----Ccc-cCHHHhccccCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADRARAT---------G----VGL-VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g----~~~-~~l~ell~~aD~V~l~~Plt 257 (595)
++|+|||.|.+|..+|..+...|. +|+.+|........... . +.. .++++ +++||+|+++++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~- 79 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL- 79 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC-
Confidence 579999999999999999887665 89999986533222211 1 111 25666 7999999999983
Q ss_pred hhccc------------cccH--HHHhcCCCceEEEeccCCchhcHHHHHHH--HhcCCeeEEE--Ee
Q 046427 258 PATSK------------MFND--EAFFKMKKGVRIVNVARGGVVDEEALVRA--LDSGIISQAA--LD 307 (595)
Q Consensus 258 ~~t~~------------li~~--~~l~~mk~gailiN~arg~~vd~~aL~~a--L~~g~i~ga~--lD 307 (595)
+...+ ++.. +.+....+++++|+++---=+-...+.+. +...++.|.+ ||
T Consensus 80 p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 80 PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 32221 1111 22334457889999864222223444444 5555666654 56
No 228
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.94 E-value=0.0038 Score=50.79 Aligned_cols=67 Identities=12% Similarity=0.349 Sum_probs=51.0
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEE--EEcCCCC-cHHHHHHHhcCCCcceEE
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMT--IGVDEEP-SREVLKKIGETPAIEEFV 591 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~v--i~~d~~~-~~e~l~~L~~~~~v~~v~ 591 (595)
|.+...|+||.++.|++.+++.|+||..++..+.. .+.+.+. +++.+.. -..++++|+++|+|.-..
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~~~ 71 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRALPEVKVLS 71 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEEEE
Confidence 56778999999999999999999999999986543 3444444 4444432 348999999999986543
No 229
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.94 E-value=0.0026 Score=66.24 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=65.6
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcC----CCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGL----GMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t 260 (595)
.+.++.||++.|||-+ .+|+.+|..|... +..|..+.... .++.+.+++||+|+.++..
T Consensus 155 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T------------~~l~~~~~~ADIvVsAvGk---- 218 (297)
T PRK14168 155 SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS------------KNLARHCQRADILIVAAGV---- 218 (297)
T ss_pred hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC------------cCHHHHHhhCCEEEEecCC----
Confidence 3668999999999995 5899999999876 78898875432 2588899999999999973
Q ss_pred cccccHHHHhcCCCceEEEeccCCc
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~arg~ 285 (595)
.+++..+. .|+|+++||+|--.
T Consensus 219 p~~i~~~~---ik~gavVIDvGin~ 240 (297)
T PRK14168 219 PNLVKPEW---IKPGATVIDVGVNR 240 (297)
T ss_pred cCccCHHH---cCCCCEEEecCCCc
Confidence 45677765 48999999998544
No 230
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.94 E-value=0.0025 Score=66.44 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=65.0
Q ss_pred eeeecCCEEEEEeCC-hHHHHHHHHHhc----CCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcc
Q 046427 187 GVSLVGKTLAVMGFG-KVGTEVARRAKG----LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 187 g~~l~gktvGIIGlG-~IG~~vA~~l~~----~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
+.++.||++.|||-+ .+|+.+|..|.. .+..|..+.... .++.+.+++||+|+.+++..
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------------~~l~~~~~~ADIvI~Avg~~---- 217 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------------KDIPSYTRQADILIAAIGKA---- 217 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCcc----
Confidence 568999999999996 579999999876 578888876432 24789999999999999732
Q ss_pred ccccHHHHhcCCCceEEEeccCCc
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~ 285 (595)
++|..+.+ |+|+++||+|-..
T Consensus 218 ~li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 218 RFITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred CccCHHHc---CCCCEEEEeeccc
Confidence 67888776 9999999998544
No 231
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=96.93 E-value=0.003 Score=67.47 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=63.2
Q ss_pred EEEEEeCChHHHHHHHHHhcCC--------CEEEEECCCC---cHHHHHH-----------cCC------cc-cCHHHhc
Q 046427 194 TLAVMGFGKVGTEVARRAKGLG--------MNVIAHDPYA---QADRARA-----------TGV------GL-VSFEEAI 244 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G--------~~V~~~d~~~---~~~~a~~-----------~g~------~~-~~l~ell 244 (595)
+|+|||.|..|.++|..+..-| .+|..|.+.. ....... .|+ .. .++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 4899999999999999998655 8999997621 1111000 122 11 3689999
Q ss_pred cccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCC
Q 046427 245 STADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 245 ~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg 284 (595)
++||+|++++| +...+.++. +.-..++++..+|+++.|
T Consensus 81 ~~ADiIIlAVP-s~~i~~vl~-~l~~~l~~~~~iVs~tKG 118 (342)
T TIGR03376 81 KGADILVFVIP-HQFLEGICK-QLKGHVKPNARAISCIKG 118 (342)
T ss_pred hcCCEEEEECC-hHHHHHHHH-HHHhhcCCCCEEEEEeCC
Confidence 99999999999 444555543 333457889999999987
No 232
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.93 E-value=0.0023 Score=66.25 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=65.5
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhc----CCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKG----LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~----~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t 260 (595)
.+.++.||++.|||-+ .+|+.+|..|.. .+..|..++.+. .++.+.+++||+|+.+++ .
T Consensus 151 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t------------~~l~~~~~~ADIVI~AvG----~ 214 (286)
T PRK14184 151 YGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT------------PDLAEECREADFLFVAIG----R 214 (286)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecC----C
Confidence 3568999999999996 479999999998 788998876432 258899999999999996 3
Q ss_pred cccccHHHHhcCCCceEEEeccC
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ar 283 (595)
.+++..+.+ |+|+++||+|-
T Consensus 215 p~li~~~~v---k~GavVIDVGi 234 (286)
T PRK14184 215 PRFVTADMV---KPGAVVVDVGI 234 (286)
T ss_pred CCcCCHHHc---CCCCEEEEeee
Confidence 567887665 99999999983
No 233
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.91 E-value=0.0036 Score=68.66 Aligned_cols=107 Identities=23% Similarity=0.248 Sum_probs=71.3
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEE-C-------CC-CcHHHH------------------HHcCCcccC
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH-D-------PY-AQADRA------------------RATGVGLVS 239 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~-d-------~~-~~~~~a------------------~~~g~~~~~ 239 (595)
|.+|.|+|+.|.|+|++|+..|+.|..+|++|++. | +. .+.+.. ...+....+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 55799999999999999999999999999999983 3 22 111100 111333445
Q ss_pred HHHhc-cccCEEEEeCCCChhccccccHHHHhcCCC-ce-EEEeccCCchhcHHHHHHHHhcC
Q 046427 240 FEEAI-STADFISLHMPLTPATSKMFNDEAFFKMKK-GV-RIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 240 l~ell-~~aD~V~l~~Plt~~t~~li~~~~l~~mk~-ga-iliN~arg~~vd~~aL~~aL~~g 299 (595)
-++++ ..||+++-|. +.+.|+.+....++. |+ +|+-.+-+ ....++.....+.|
T Consensus 303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~~L~~rg 359 (444)
T PRK14031 303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIKVFQDAK 359 (444)
T ss_pred CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHHHHHHCC
Confidence 55654 3699998775 678888888888765 45 45555566 55655543333333
No 234
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.91 E-value=0.0034 Score=68.98 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=72.4
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEE-C-------CCC-cHHHH---H------------HcCCcccCHHH
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH-D-------PYA-QADRA---R------------ATGVGLVSFEE 242 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~-d-------~~~-~~~~a---~------------~~g~~~~~l~e 242 (595)
+.++.|+||.|.|+|++|+.+|+.|..+|++|++. | +.- +.+.. + ..+.+..+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 45799999999999999999999999999999986 5 221 11100 0 00223344555
Q ss_pred hcc-ccCEEEEeCCCChhccccccHHHHhcCC--CceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 243 AIS-TADFISLHMPLTPATSKMFNDEAFFKMK--KGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 243 ll~-~aD~V~l~~Plt~~t~~li~~~~l~~mk--~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
++. +||+++-|.. .+.|+.+....++ +-.+|+-.+-+.+ ..++ .+.|.+..|
T Consensus 307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~A-~~~L~~rGI 361 (445)
T PRK09414 307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPEA-IEVFLEAGV 361 (445)
T ss_pred ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHHH-HHHHHHCCc
Confidence 555 6999998874 5667777666663 2347777777777 4443 455555554
No 235
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.88 E-value=0.0022 Score=63.37 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=52.6
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH--HHHcC-Cccc--C-HHHhccccCEEEEeCCCCh
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR--ARATG-VGLV--S-FEEAISTADFISLHMPLTP 258 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~g-~~~~--~-l~ell~~aD~V~l~~Plt~ 258 (595)
.++.||++.|||.|.+|...++.|...|.+|++++|....+. ....+ +.+. . .++.+..+|+|+.++...+
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 479999999999999999999999999999999998764321 12222 2221 1 2455788999988887444
No 236
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.87 E-value=0.0026 Score=56.63 Aligned_cols=63 Identities=21% Similarity=0.381 Sum_probs=49.3
Q ss_pred EEEEEeCChHHHHHHHHHhcC--CCEEE-EECCCCcH--HHHHHcCCcc-cCHHHhcc--ccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGL--GMNVI-AHDPYAQA--DRARATGVGL-VSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~g~~~-~~l~ell~--~aD~V~l~~Pl 256 (595)
++||||+|.+|+.....+... ++++. ++|++... ..+...|+.. .+++++++ +.|+|++++|.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC
Confidence 699999999999999888755 56766 57887632 2345667753 48999998 79999999995
No 237
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.87 E-value=0.0031 Score=66.72 Aligned_cols=90 Identities=17% Similarity=0.249 Sum_probs=61.8
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHc--------CC------cc-cCHHHhc-cccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARAT--------GV------GL-VSFEEAI-STADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~--------g~------~~-~~l~ell-~~aD~V~l~~Pl 256 (595)
+|+|||.|.+|..+|..|...|.+|..|+++.. .+...+. +. .. .++++.+ ..+|+|++++|.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 699999999999999999999999999998642 1111111 11 11 2466665 589999999994
Q ss_pred ChhccccccHHHHh-cCCCceEEEeccCCc
Q 046427 257 TPATSKMFNDEAFF-KMKKGVRIVNVARGG 285 (595)
Q Consensus 257 t~~t~~li~~~~l~-~mk~gailiN~arg~ 285 (595)
..+...+.. ... .++++..++.+..|=
T Consensus 82 -~~~~~~l~~-l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 82 -QQLRTICQQ-LQDCHLKKNTPILICSKGI 109 (326)
T ss_pred -HHHHHHHHH-HHHhcCCCCCEEEEEEcCe
Confidence 446655543 222 466777777776653
No 238
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.86 E-value=0.0022 Score=67.30 Aligned_cols=93 Identities=23% Similarity=0.268 Sum_probs=67.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHH-HHHH--c------CC------c-ccCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD-RARA--T------GV------G-LVSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~--~------g~------~-~~~l~ell~~aD~V~l~~Pl 256 (595)
++|.|+|.|.-|.++|..+..-|.+|..|.++.... .... . |+ . ..+++++++.||+|++.+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP- 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP- 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence 579999999999999999999999999887653211 0000 0 11 1 2379999999999999999
Q ss_pred ChhccccccHHHHhcCCCceEEEeccCCchh
Q 046427 257 TPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287 (595)
Q Consensus 257 t~~t~~li~~~~l~~mk~gailiN~arg~~v 287 (595)
+...+..+..- -..+++++++|+++.|=-.
T Consensus 81 s~~~r~v~~~l-~~~l~~~~~iv~~sKGie~ 110 (329)
T COG0240 81 SQALREVLRQL-KPLLLKDAIIVSATKGLEP 110 (329)
T ss_pred hHHHHHHHHHH-hhhccCCCeEEEEeccccC
Confidence 44455555432 2467899999999976433
No 239
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.86 E-value=0.002 Score=63.58 Aligned_cols=91 Identities=21% Similarity=0.256 Sum_probs=63.0
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC---c---HH--HHHHcC-----------------Cc--c---
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA---Q---AD--RARATG-----------------VG--L--- 237 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~---~---~~--~a~~~g-----------------~~--~--- 237 (595)
.|..++|+|+|+|.+|+.+|..|...|. ++..+|+.. + .. ...+.| +. .
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~ 97 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDE 97 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 4888999999999999999999999998 699988761 0 00 000111 11 0
Q ss_pred ----cCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEe
Q 046427 238 ----VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280 (595)
Q Consensus 238 ----~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN 280 (595)
.+++++++++|+|+-| ..+.+++.++.......++...++..
T Consensus 98 ~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 98 KITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred eCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 1245577888888888 46777888877777776776555553
No 240
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.85 E-value=0.0024 Score=71.20 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=52.1
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH--HHHHHcCCcccCHHHh--ccccCEEEEeCCCC
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA--DRARATGVGLVSFEEA--ISTADFISLHMPLT 257 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~~l~el--l~~aD~V~l~~Plt 257 (595)
..+.+++++|+|.|.+|++++..+...|++|.++|++... +.+...+....+++++ +.++|+|+.|+|..
T Consensus 328 ~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 328 IPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCC
Confidence 3577899999999999999999999999999999986522 2222333233333433 57899999999964
No 241
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.84 E-value=0.0022 Score=61.81 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=57.4
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC--CcHHHHHHHhcCCCcceEEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE--PSREVLKKIGETPAIEEFVF 592 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~--~~~e~l~~L~~~~~v~~v~~ 592 (595)
|.+-+..+|+||++.+|+.+|.++|+||.++.++.....+.+-+.+.++.. .-+++.++|.++-.+.+|..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~ 75 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQD 75 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEe
Confidence 677788899999999999999999999999999876666666666666654 34577888888877777654
No 242
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.83 E-value=0.0039 Score=64.97 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=65.1
Q ss_pred ceeeecCCEEEEEeCC-hHHHHHHHHHhcC----CCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhc
Q 046427 186 VGVSLVGKTLAVMGFG-KVGTEVARRAKGL----GMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 186 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t 260 (595)
.+.++.||++.|||-+ .+|+.+|..|... +..|..+.... .++.+..++||+|+.++-.
T Consensus 151 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~~l~~~~~~ADIvIsAvGk---- 214 (297)
T PRK14167 151 AGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT------------DDLAAKTRRADIVVAAAGV---- 214 (297)
T ss_pred hCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 3567999999999996 5799999999865 78999875432 2578999999999999863
Q ss_pred cccccHHHHhcCCCceEEEeccCCc
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~arg~ 285 (595)
.+++..+. .|+|+++||+|--.
T Consensus 215 p~~i~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 215 PELIDGSM---LSEGATVIDVGINR 236 (297)
T ss_pred cCccCHHH---cCCCCEEEEccccc
Confidence 45787765 58999999998544
No 243
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.83 E-value=0.0041 Score=66.90 Aligned_cols=91 Identities=18% Similarity=0.275 Sum_probs=62.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC-------CEEEEECCCCc------HHHHHHc--------CCc-------ccCHHHhc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG-------MNVIAHDPYAQ------ADRARAT--------GVG-------LVSFEEAI 244 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~------~~~a~~~--------g~~-------~~~l~ell 244 (595)
++|+|||.|..|.++|..+..-| .+|..|.++.. .+...+. |+. ..++++++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 58999999999999999998544 78888866542 1111111 121 12688999
Q ss_pred cccCEEEEeCCCChhccccccHHHHh--cCCCceEEEeccCCc
Q 046427 245 STADFISLHMPLTPATSKMFNDEAFF--KMKKGVRIVNVARGG 285 (595)
Q Consensus 245 ~~aD~V~l~~Plt~~t~~li~~~~l~--~mk~gailiN~arg~ 285 (595)
++||+|++++| +...+.++.. .-. .+++++++|+++.|=
T Consensus 92 ~~aDiIvlAVP-sq~l~~vl~~-l~~~~~l~~~~~iIS~aKGI 132 (365)
T PTZ00345 92 EDADLLIFVIP-HQFLESVLSQ-IKENNNLKKHARAISLTKGI 132 (365)
T ss_pred hcCCEEEEEcC-hHHHHHHHHH-hccccccCCCCEEEEEeCCc
Confidence 99999999999 4445555433 222 466788999998773
No 244
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.82 E-value=0.005 Score=65.31 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=62.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHh-cCCC-EEEEECCCCcH--HHHHH----cCCcc---cCHHHhccccCEEEEeCCCChh
Q 046427 191 VGKTLAVMGFGKVGTEVARRAK-GLGM-NVIAHDPYAQA--DRARA----TGVGL---VSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a~~----~g~~~---~~l~ell~~aD~V~l~~Plt~~ 259 (595)
..++++|||.|.+|+..++.+. .++. +|.+|+++... ..+.+ .|+.. .++++.+++||+|+.|+|..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 3578999999999999999987 4674 69999997632 22222 24432 36889999999999999853
Q ss_pred ccccccHHHHhcCCCceEEEecc
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~a 282 (595)
.-++..+. +|+|+.+..++
T Consensus 206 -~p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 206 -TPILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred -CcEecHHH---cCCCcEEEeeC
Confidence 35665543 68888766554
No 245
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.80 E-value=0.0027 Score=57.17 Aligned_cols=88 Identities=19% Similarity=0.293 Sum_probs=54.7
Q ss_pred EEEEEeC-ChHHHHHHHHHhcC-CCEEEEE-CCCC-cHHHHHHcC--Cc-----ccCHHHh-ccccCEEEEeCCCChhcc
Q 046427 194 TLAVMGF-GKVGTEVARRAKGL-GMNVIAH-DPYA-QADRARATG--VG-----LVSFEEA-ISTADFISLHMPLTPATS 261 (595)
Q Consensus 194 tvGIIGl-G~IG~~vA~~l~~~-G~~V~~~-d~~~-~~~~a~~~g--~~-----~~~l~el-l~~aD~V~l~~Plt~~t~ 261 (595)
++||+|. |.+|+.+++.+... ++++.+. ++.. ........+ +. ..+.+++ ..++|+|++|+|.. .+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~-~~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHG-VSK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcH-HHH
Confidence 5899994 99999999999874 7777765 4322 111111111 11 1121222 25899999999954 344
Q ss_pred ccccHHHHhcCCCceEEEeccC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~ar 283 (595)
..+. .....+++|.++|+++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 4332 22445799999999983
No 246
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.79 E-value=0.006 Score=64.57 Aligned_cols=115 Identities=18% Similarity=0.191 Sum_probs=68.7
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCCcHHHHHHc---------CC----cc-cCHHHhccccCEEEEeC
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYAQADRARAT---------GV----GL-VSFEEAISTADFISLHM 254 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~---------g~----~~-~~l~ell~~aD~V~l~~ 254 (595)
+..++|+|||.|.+|..+|..+...| .++..||.+.....+..+ +. .. .+.+ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45679999999999999999988777 689999986532111111 11 11 2455 779999999999
Q ss_pred --CCChh-cc--------cccc--HHHHhcCCCceEEEeccCCchhcHHHHHHH--HhcCCeeEEE
Q 046427 255 --PLTPA-TS--------KMFN--DEAFFKMKKGVRIVNVARGGVVDEEALVRA--LDSGIISQAA 305 (595)
Q Consensus 255 --Plt~~-t~--------~li~--~~~l~~mk~gailiN~arg~~vd~~aL~~a--L~~g~i~ga~ 305 (595)
|..+. ++ .++. .+.+....|.++++|++--.=+....+.+. +...++.|.+
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 44331 11 1110 123444567888888853221223334443 2245666655
No 247
>PLN02477 glutamate dehydrogenase
Probab=96.77 E-value=0.027 Score=61.51 Aligned_cols=107 Identities=24% Similarity=0.306 Sum_probs=72.1
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE-ECCC-------C-cHHHHHH----c-------CCcccCHHHh-cc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA-HDPY-------A-QADRARA----T-------GVGLVSFEEA-IS 245 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~-------~-~~~~a~~----~-------g~~~~~l~el-l~ 245 (595)
|.++.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+ - +.+...+ . +.+.++.+++ ..
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 4579999999999999999999999999999995 3432 1 2221111 1 1122344444 34
Q ss_pred ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 246 ~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
.||+++-|. ..+.|+++....++ -.+|+-.+-+.+ ..++ .+.|.+..|
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~ea-~~~L~~rGI 328 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPEA-DEILRKKGV 328 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHHH-HHHHHHCCc
Confidence 799998875 56678888888775 457777777887 4443 466666655
No 248
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.75 E-value=0.0055 Score=65.00 Aligned_cols=87 Identities=25% Similarity=0.204 Sum_probs=63.4
Q ss_pred cCCEEEEEeCChHHHHHHHHHh-cCCC-EEEEECCCCcH--HHHH----HcCCc---ccCHHHhccccCEEEEeCCCChh
Q 046427 191 VGKTLAVMGFGKVGTEVARRAK-GLGM-NVIAHDPYAQA--DRAR----ATGVG---LVSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a~----~~g~~---~~~l~ell~~aD~V~l~~Plt~~ 259 (595)
..++++|||.|.+|+..++.+. ..+. +|.+||++... +.+. ..+++ +.++++++++||+|+.|+|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4678999999999999887765 4564 78889987632 2222 22443 337899999999999999954
Q ss_pred ccccccHHHHhcCCCceEEEeccCC
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVARG 284 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~arg 284 (595)
.-++. +.+|+|+.++.++.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 34454 446999999998753
No 249
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.72 E-value=0.0036 Score=62.00 Aligned_cols=90 Identities=17% Similarity=0.129 Sum_probs=62.0
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH--HHHc-CCccc--C-HHHhccccCEEEEeCCCChhcc
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR--ARAT-GVGLV--S-FEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~-g~~~~--~-l~ell~~aD~V~l~~Plt~~t~ 261 (595)
.++.||++.|||-|.+|..-++.|..+|.+|.+++|....+. ..+. .+++. + -.+.+..+|+|+.++...+-
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~l-- 82 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEEL-- 82 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHH--
Confidence 468999999999999999999999999999999998764321 1222 33321 1 14557889998887654322
Q ss_pred ccccHHHHhcCCCceEEEecc
Q 046427 262 KMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~a 282 (595)
|.......+.-.++||+.
T Consensus 83 ---n~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 83 ---NRRVAHAARARGVPVNVV 100 (205)
T ss_pred ---HHHHHHHHHHcCCEEEEC
Confidence 334444445555777764
No 250
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.67 E-value=0.0082 Score=61.45 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=64.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcC---CCEEEE-ECCCCcHHHHHHcCCccc-CHHHh-ccccCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL---GMNVIA-HDPYAQADRARATGVGLV-SFEEA-ISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~---G~~V~~-~d~~~~~~~a~~~g~~~~-~l~el-l~~aD~V~l~~Plt~~t~~li~~ 266 (595)
++|||||+|.||+.+++.+..- ++++.+ |++...........+..+ +++++ ....|+|+=|..- ...+..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~-~av~e~--- 78 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQ-QAIAEH--- 78 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCH-HHHHHH---
Confidence 5899999999999999998743 355444 666542221111224433 69997 5889999999863 222222
Q ss_pred HHHhcCCCceEEEeccCCchhc---HHHHHHHHhc
Q 046427 267 EAFFKMKKGVRIVNVARGGVVD---EEALVRALDS 298 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd---~~aL~~aL~~ 298 (595)
-..-++.|.-++=.|-|.+.| .+.|.++.+.
T Consensus 79 -~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 79 -AEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred -HHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 222356777777788888887 4455554443
No 251
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.67 E-value=0.012 Score=58.76 Aligned_cols=106 Identities=29% Similarity=0.289 Sum_probs=67.5
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE-ECCCC----------cHH-HHHHc-CCcc------cCHHHhc-ccc
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA-HDPYA----------QAD-RARAT-GVGL------VSFEEAI-STA 247 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~----------~~~-~a~~~-g~~~------~~l~ell-~~a 247 (595)
.+|.|+++.|.|+|++|+.+|+.|...|.+|++ .|.+. ... ...+. ++.. .+-++++ .+|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 368999999999999999999999999997666 45433 111 11111 1211 1223443 379
Q ss_pred CEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 248 DFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 248 D~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
|+++-|.+ .+.|+.+....++ -.+++-.+-+++-+ ++ .+.|.+..+
T Consensus 99 DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~-~a-~~~L~~~Gi 144 (217)
T cd05211 99 DIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD-EA-LRILHERGI 144 (217)
T ss_pred cEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH-HH-HHHHHHCCc
Confidence 99999886 3467877777776 34666666767644 33 444444433
No 252
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.67 E-value=0.0059 Score=47.22 Aligned_cols=66 Identities=11% Similarity=0.360 Sum_probs=49.3
Q ss_pred EEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCC---cHHHHHHHhcCCCcceEE
Q 046427 525 LCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEP---SREVLKKIGETPAIEEFV 591 (595)
Q Consensus 525 iv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~---~~e~l~~L~~~~~v~~v~ 591 (595)
-+...|+||.++.+.+.|+++++||.++...... ++.+.+.+.++.+- -..+++.|+.+++|..+.
T Consensus 2 ~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 70 (71)
T cd04876 2 RVEAIDRPGLLADITTVIAEEKINILSVNTRTDD-DGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred EEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence 3567899999999999999999999999886433 34455555554332 237788899999887653
No 253
>PRK06046 alanine dehydrogenase; Validated
Probab=96.64 E-value=0.0071 Score=64.16 Aligned_cols=85 Identities=18% Similarity=0.250 Sum_probs=61.3
Q ss_pred CCEEEEEeCChHHHHHHHHHh-cCCC-EEEEECCCCcH-H-HHHH----cCC--c-ccCHHHhccccCEEEEeCCCChhc
Q 046427 192 GKTLAVMGFGKVGTEVARRAK-GLGM-NVIAHDPYAQA-D-RARA----TGV--G-LVSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~-~-~a~~----~g~--~-~~~l~ell~~aD~V~l~~Plt~~t 260 (595)
-+++||||.|.+|+..++.+. ..+. +|.+||++... + .+.+ .++ . ..+++++++ +|+|++|+|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 368999999999999999887 3455 57779998632 2 2222 243 2 237889987 99999999953
Q ss_pred cccccHHHHhcCCCceEEEeccC
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ar 283 (595)
.-++..+. +|+|+.+..++.
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred CcEecHHH---cCCCCEEEecCC
Confidence 45666554 589999888874
No 254
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.63 E-value=0.003 Score=58.76 Aligned_cols=108 Identities=15% Similarity=0.217 Sum_probs=73.3
Q ss_pred EEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc--------------C-HHHhccccCEEEEeCCCChh
Q 046427 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV--------------S-FEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~--------------~-l~ell~~aD~V~l~~Plt~~ 259 (595)
|+|+|.|.||.-+|.+|+..|.+|..+++....+...+.|+... . ..+....+|+|++|+... +
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-Q 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-G
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-c
Confidence 68999999999999999999999999988653343445554221 1 124677899999999743 4
Q ss_pred ccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEE
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAA 305 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~ 305 (595)
+...+.. .-..+++++.++-.--| +-.++.+.+.+...++.++.
T Consensus 80 ~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 80 LEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp HHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred hHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence 5555544 44456676666655444 44577777777666765543
No 255
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.62 E-value=0.032 Score=61.36 Aligned_cols=108 Identities=24% Similarity=0.314 Sum_probs=74.7
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE--------ECCCC-cHHHH------H------------Hc-CCccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA--------HDPYA-QADRA------R------------AT-GVGLV 238 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~a------~------------~~-g~~~~ 238 (595)
|.+|.|+||.|-|+|++|+..|+.|..+|++|++ ||+.- +.+.. + .. +.+.+
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 4579999999999999999999999999999999 88653 32210 0 11 33444
Q ss_pred CHHHhcc-ccCEEEEeCCCChhccccccHHHHhcCC--CceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 239 SFEEAIS-TADFISLHMPLTPATSKMFNDEAFFKMK--KGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 239 ~l~ell~-~aD~V~l~~Plt~~t~~li~~~~l~~mk--~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
+-++++. .||+++-|. +.+.|+.+....+. +-.+|+-.+-+ .+..++ .+.|.+..|
T Consensus 303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA-~~iL~~rGI 361 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEA-IDKFIAAKQ 361 (445)
T ss_pred CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHH-HHHHHHCCC
Confidence 5555554 599998775 67888888777772 23466666666 455554 355555544
No 256
>PRK04435 hypothetical protein; Provisional
Probab=96.60 E-value=0.0083 Score=56.31 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=57.3
Q ss_pred cCccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCC----cHHHHHHHhcCCCcceEEEEe
Q 046427 519 LEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEP----SREVLKKIGETPAIEEFVFLK 594 (595)
Q Consensus 519 ~~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~----~~e~l~~L~~~~~v~~v~~i~ 594 (595)
+.--.|.+...|+||+++.|.+.|+++++||..++..... ++.+-+.+.++..- =.+++++|+++++|.+|.++-
T Consensus 67 ~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~-~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~ 145 (147)
T PRK04435 67 GKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPL-QGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG 145 (147)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCC-CCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3445667788999999999999999999999999874322 34555555554432 238999999999999998863
No 257
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.58 E-value=0.0058 Score=50.33 Aligned_cols=59 Identities=15% Similarity=0.244 Sum_probs=39.3
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcH-HHHHHHh
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSR-EVLKKIG 582 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~-e~l~~L~ 582 (595)
+-+.-+|+||++..|++.|+++++||.+++.......=...+.++++...+. ++.+.|.
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~ 61 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLL 61 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHH
Confidence 4467799999999999999999999999975443322223344555554333 3333343
No 258
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.55 E-value=0.0064 Score=50.42 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=42.4
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeec----CCCcEEEEEEcCCC--CcH-HHHHHHhcC
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIA----PQKQAVMTIGVDEE--PSR-EVLKKIGET 584 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~----~g~~al~vi~~d~~--~~~-e~l~~L~~~ 584 (595)
+.+..+|+||++++|++.|+++++||.+++..... ..+.-.+.++++-+ .+. ++.+.|+++
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL 69 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999999999996543 22334445555444 333 555555544
No 259
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.55 E-value=0.0055 Score=50.18 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=38.3
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE 572 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~ 572 (595)
+.+..+|+||++.+|++.|.++|+||.+++......++.-.+.++++-+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~ 50 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE 50 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC
Confidence 4567899999999999999999999999998754444444555555544
No 260
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.54 E-value=0.0079 Score=63.74 Aligned_cols=44 Identities=34% Similarity=0.478 Sum_probs=38.7
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGV 235 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~ 235 (595)
|++|+|+|+|-.|..-.+.++++|++|+++|+... .+.++++|.
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA 211 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA 211 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC
Confidence 88999999999999999999999999999999873 456777775
No 261
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.53 E-value=0.0047 Score=51.30 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=36.1
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcC
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVD 570 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d 570 (595)
.|.+.-+|+||+++.|++.|+++|.||.+++... .++.-.|++.++
T Consensus 3 iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~--~~~~F~m~~~~~ 48 (77)
T cd04893 3 VISALGTDRPGILNELTRAVSESGCNILDSRMAI--LGTEFALTMLVE 48 (77)
T ss_pred EEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE--EcCEEEEEEEEE
Confidence 3556789999999999999999999999999976 333445544444
No 262
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.52 E-value=0.0086 Score=63.28 Aligned_cols=86 Identities=17% Similarity=0.237 Sum_probs=63.6
Q ss_pred CCEEEEEeCChHHHHHHHHHhc-CC-CEEEEECCCCcH-H-H---HHHcCCcc---cCHHHhccccCEEEEeCCCChhcc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKG-LG-MNVIAHDPYAQA-D-R---ARATGVGL---VSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~-~-~---a~~~g~~~---~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
-++++|||.|..++.-++.+.. +. -+|.+||++... + . ..+.++.. .+.++++++||+|+.|+|. +.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---RE 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---CC
Confidence 4689999999999999888763 33 479999998632 2 1 12224432 3789999999999999873 45
Q ss_pred ccccHHHHhcCCCceEEEeccC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~ar 283 (595)
-+++.+. +|||+.|+.+|.
T Consensus 205 P~~~~~~---l~~G~hi~~iGs 223 (315)
T PRK06823 205 PLLQAED---IQPGTHITAVGA 223 (315)
T ss_pred ceeCHHH---cCCCcEEEecCC
Confidence 6676554 689999998874
No 263
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.51 E-value=0.0074 Score=59.87 Aligned_cols=92 Identities=16% Similarity=0.297 Sum_probs=62.6
Q ss_pred EEEEEeCChHHHHHHHHHhcC--CCE-EEEECCCCcHHH--HHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 194 TLAVMGFGKVGTEVARRAKGL--GMN-VIAHDPYAQADR--ARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~--G~~-V~~~d~~~~~~~--a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
+|||||+|.||+.+.+.++.- .++ +.+||+...... +...+.. ..+++|++++.|+++=|.. .+..+.+.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e~~--- 77 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVREYV--- 77 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHHHh---
Confidence 699999999999999999843 454 777998764332 2233322 3479999999999998885 23333332
Q ss_pred HHhcCCCceEEEeccCCchhcHH
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEE 290 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~ 290 (595)
.+.||.|.=++=+|-|.+.|+.
T Consensus 78 -~~~L~~g~d~iV~SVGALad~~ 99 (255)
T COG1712 78 -PKILKAGIDVIVMSVGALADEG 99 (255)
T ss_pred -HHHHhcCCCEEEEechhccChH
Confidence 3335666666666668887544
No 264
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.51 E-value=0.007 Score=57.45 Aligned_cols=69 Identities=20% Similarity=0.218 Sum_probs=50.7
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcC-Cccc--CH-HHhccccCEEEEeCCC
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG-VGLV--SF-EEAISTADFISLHMPL 256 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g-~~~~--~l-~ell~~aD~V~l~~Pl 256 (595)
..+|.|+++.|||-|.+|...++.|...|.+|.+++|....+.. +++ +.+. .+ ++-+.++|+|+.++..
T Consensus 8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~-~l~~i~~~~~~~~~~dl~~a~lViaaT~d 80 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMK-ELPYITWKQKTFSNDDIKDAHLIYAATNQ 80 (157)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHH-hccCcEEEecccChhcCCCceEEEECCCC
Confidence 45899999999999999999999999999999999886644332 232 2211 11 2346778888887753
No 265
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.49 E-value=0.0079 Score=48.30 Aligned_cols=62 Identities=18% Similarity=0.346 Sum_probs=45.7
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC-CcHHHHHHHhc
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE-PSREVLKKIGE 583 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~-~~~e~l~~L~~ 583 (595)
+.+-+.-+|+||.++++.++|+++++||.++...+...+..+..++.++.+ -.+.+.+.|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHHHH
Confidence 456678899999999999999999999999987765333345556666532 23466666665
No 266
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.48 E-value=0.01 Score=62.98 Aligned_cols=90 Identities=10% Similarity=0.027 Sum_probs=58.2
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
.+.||++.|||.|.||+.+|+.|...|. +|++.+|........... ...-+...++|+|+.|.--|......+..+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~---~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~ 247 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVV---REELSFQDPYDVIFFGSSESAYAFPHLSWE 247 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhh---hhhhhcccCCCEEEEcCCcCCCCCceeeHH
Confidence 5899999999999999999999999995 699999875321111000 011245679999998743233334445555
Q ss_pred HHhcCCCceEEEecc
Q 046427 268 AFFKMKKGVRIVNVA 282 (595)
Q Consensus 268 ~l~~mk~gailiN~a 282 (595)
.++..++ -+++|.+
T Consensus 248 ~~~~~~~-r~~iDLA 261 (338)
T PRK00676 248 SLADIPD-RIVFDFN 261 (338)
T ss_pred HHhhccC-cEEEEec
Confidence 5543322 2666665
No 267
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.44 E-value=0.0093 Score=64.60 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=63.8
Q ss_pred CCEEEEEeCChHHHHHHHHHhc-CC--CEEEEECCCCcH--HHHH----Hc-C---Ccc-cCHHHhccccCEEEEeCCCC
Q 046427 192 GKTLAVMGFGKVGTEVARRAKG-LG--MNVIAHDPYAQA--DRAR----AT-G---VGL-VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~-~G--~~V~~~d~~~~~--~~a~----~~-g---~~~-~~l~ell~~aD~V~l~~Plt 257 (595)
-++++|||.|..++.-++.+.. +. -+|.+||++... ..+. .. + +.. .+.++++++||+|+.|++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4689999999999999988775 42 389999998632 1111 11 2 222 37999999999999999854
Q ss_pred h---hccccccHHHHhcCCCceEEEeccC
Q 046427 258 P---ATSKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 258 ~---~t~~li~~~~l~~mk~gailiN~ar 283 (595)
. .+.-++..+. +|+|+.|+.++.
T Consensus 235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~ 260 (379)
T PRK06199 235 TGDPSTYPYVKREW---VKPGAFLLMPAA 260 (379)
T ss_pred CCCCCcCcEecHHH---cCCCcEEecCCc
Confidence 3 2346666554 689998877655
No 268
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.42 E-value=0.0064 Score=64.16 Aligned_cols=90 Identities=28% Similarity=0.278 Sum_probs=53.9
Q ss_pred CEEEEEeCChHHHHHHHHHhc-CCC-EEEEECCCCc-H-HH---HHHcCCcc---cCHHHhccccCEEEEeCCCChhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKG-LGM-NVIAHDPYAQ-A-DR---ARATGVGL---VSFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~-~-~~---a~~~g~~~---~~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
+++||||.|..|+.-++.+.. ++. +|.+|+++.. . .. ..+.++.. .+.++++++||+|+.|+|.+..+ -
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 589999999999999988763 554 7999999862 1 11 12234432 37999999999999999854432 5
Q ss_pred cccHHHHhcCCCceEEEeccCCch
Q 046427 263 MFNDEAFFKMKKGVRIVNVARGGV 286 (595)
Q Consensus 263 li~~~~l~~mk~gailiN~arg~~ 286 (595)
+++.+ .+|+|+.|+.++....
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SST
T ss_pred cccHH---HcCCCcEEEEecCCCC
Confidence 66654 4689999998886443
No 269
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.40 E-value=0.017 Score=62.26 Aligned_cols=108 Identities=27% Similarity=0.362 Sum_probs=76.6
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc---------H-----------HHHHHcCCcccCHHHhcc-
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ---------A-----------DRARATGVGLVSFEEAIS- 245 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~---------~-----------~~a~~~g~~~~~l~ell~- 245 (595)
+..+.|+||.|=|+|++|+..|+.+...|.+|+++|.... . ......+.+.++-++++.
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~ 281 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEV 281 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccc
Confidence 4459999999999999999999999999999998764332 0 111222344555577765
Q ss_pred ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 246 ~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
.||+.+=|. +.+.|+.+....+|-. +++-.+-+++- .++--..++.|-+
T Consensus 282 ~cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erGIl 330 (411)
T COG0334 282 DCDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERGIL 330 (411)
T ss_pred cCcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCCCE
Confidence 699887664 6788888888888766 78888888874 4443333455544
No 270
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.39 E-value=0.012 Score=62.53 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=61.5
Q ss_pred cCCEEEEEeCChHHHHHHHHHhc-CC-CEEEEECCCCcH-H-HHH----HcCCc---ccCHHHhccccCEEEEeCCCChh
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKG-LG-MNVIAHDPYAQA-D-RAR----ATGVG---LVSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~-~-~a~----~~g~~---~~~l~ell~~aD~V~l~~Plt~~ 259 (595)
..++++|||.|.+|+..+..+.. .+ -+|.+|+++... + .+. ..|+. ..++++++++||+|+.++|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 35789999999999998888874 55 479999987632 2 222 12443 247899999999999999853
Q ss_pred ccccccHHHHhcCCCceEEEecc
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~a 282 (595)
.-++..+. +++|+.+..++
T Consensus 209 -~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred -CcEecHHH---cCCCceEEeeC
Confidence 45665543 57887766554
No 271
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.38 E-value=0.008 Score=48.90 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=43.6
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeec-CCCcEEEEEEcCCCCc---HHHHHHHhcC
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIA-PQKQAVMTIGVDEEPS---REVLKKIGET 584 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~-~g~~al~vi~~d~~~~---~e~l~~L~~~ 584 (595)
+-+.-+|+||.++.++++|+++|+||-.+...|.. ..+.....+.++...+ +++++.|++.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCc
Confidence 34567899999999999999999999999887752 2233445555544434 3677777554
No 272
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.36 E-value=0.011 Score=60.07 Aligned_cols=106 Identities=29% Similarity=0.420 Sum_probs=70.4
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEE--------CCCC-cHHH----HHHcCC--c-----------ccCHH-
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--------DPYA-QADR----ARATGV--G-----------LVSFE- 241 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~--------d~~~-~~~~----a~~~g~--~-----------~~~l~- 241 (595)
++.|+++.|-|+|.+|+.+|+.|...|++|++. ||.. +.+. ..+.+. . +.+-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 599999999999999999999999999998875 6543 2211 112222 1 11222
Q ss_pred Hhc-cccCEEEEeCCCChhccccccHHHHh-cCCCceEEEe-ccCCchhcHHHHHHHHhcCCe
Q 046427 242 EAI-STADFISLHMPLTPATSKMFNDEAFF-KMKKGVRIVN-VARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 242 ell-~~aD~V~l~~Plt~~t~~li~~~~l~-~mk~gailiN-~arg~~vd~~aL~~aL~~g~i 301 (595)
+++ .+||+++.|. ..+.|+.+... .++.++.+|- .+-+.+ ..++.. .|++..|
T Consensus 109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI 164 (244)
T PF00208_consen 109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGI 164 (244)
T ss_dssp HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-
T ss_pred ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCC
Confidence 566 5899999984 46678888777 7776665554 445555 455544 6666655
No 273
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.36 E-value=0.0079 Score=47.91 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=43.9
Q ss_pred EEEecCCCCchhHHHhhhhcCCccccceEeeeec---CCCcEEEEEEcCCCCcH---HHHHHHhc
Q 046427 525 LCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIA---PQKQAVMTIGVDEEPSR---EVLKKIGE 583 (595)
Q Consensus 525 iv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~---~g~~al~vi~~d~~~~~---e~l~~L~~ 583 (595)
.+.-+|+||.++.|.+.++++++||.++...+.. ..+.+.+.+.++-.-.+ +++++|++
T Consensus 2 ~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~ 66 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALRE 66 (73)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 3566899999999999999999999999886543 24556666666543323 67777765
No 274
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.35 E-value=0.013 Score=62.05 Aligned_cols=86 Identities=26% Similarity=0.321 Sum_probs=64.0
Q ss_pred CCEEEEEeCChHHHHHHHHHhc-CCC-EEEEECCCCcH-H-HH----HHcCC--cc-cCHHHhccccCEEEEeCCCChhc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKG-LGM-NVIAHDPYAQA-D-RA----RATGV--GL-VSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~-~-~a----~~~g~--~~-~~l~ell~~aD~V~l~~Plt~~t 260 (595)
-++++|||.|..++.-++.++. |+. +|.+|+++... + .+ .+.+. .. .+.+++++.||+|+.|+|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 3589999999999999998884 554 79999998632 2 12 12222 22 378999999999999999654
Q ss_pred cccccHHHHhcCCCceEEEeccC
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ar 283 (595)
-++..+. +|||+.|..++.
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 6666654 579999998884
No 275
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.32 E-value=0.013 Score=47.85 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=45.5
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcC----CCCcHHHHHHHhc
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVD----EEPSREVLKKIGE 583 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d----~~~~~e~l~~L~~ 583 (595)
..+.+..+|+||++++|+.+|.++++||....+... ++..+.++.+. ++.+++.++++++
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~--~~~~~d~f~v~~~~~~~~~~~~~~~l~~ 65 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ--GDMAVNVFYVTDANGNPVDPKTIEAVRQ 65 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC--CCeEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 356778899999999999999999999999988754 34676666652 2345566666654
No 276
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.32 E-value=0.017 Score=60.67 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=61.0
Q ss_pred CCEEEEEeCChHHHHHHHHHhc-CCC-EEEEECCCCcH--HHHHH----cCCc--c-cCHHHhccccCEEEEeCCCChhc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKG-LGM-NVIAHDPYAQA--DRARA----TGVG--L-VSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~--~~a~~----~g~~--~-~~l~ell~~aD~V~l~~Plt~~t 260 (595)
-+++||||.|..|+.-++.+.. +.. +|.+||++... ..+.+ .|+. . .+.++++++||+|+.++|. +
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s---~ 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS---D 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC---C
Confidence 4789999999999988887764 444 79999998632 22211 2432 2 3799999999999999884 3
Q ss_pred cccccHHHHhcCCCceEEEeccC
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ar 283 (595)
.-++..+. +|||+.+.-++.
T Consensus 194 ~P~~~~~~---l~pg~hV~aiGs 213 (301)
T PRK06407 194 TPIFNRKY---LGDEYHVNLAGS 213 (301)
T ss_pred CcEecHHH---cCCCceEEecCC
Confidence 46666553 578866655543
No 277
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.29 E-value=0.061 Score=56.82 Aligned_cols=104 Identities=14% Similarity=0.069 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCCEEEEECCCCcH--------HH-----------HHHcC-------------Cccc-C--HHHhcccc
Q 046427 203 VGTEVARRAKGLGMNVIAHDPYAQA--------DR-----------ARATG-------------VGLV-S--FEEAISTA 247 (595)
Q Consensus 203 IG~~vA~~l~~~G~~V~~~d~~~~~--------~~-----------a~~~g-------------~~~~-~--l~ell~~a 247 (595)
||..+|..+...|++|..||++... +. ..+.| ++.. + +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 6889999999999999999987621 10 11112 1122 2 55789999
Q ss_pred CEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc-CCeeEEEEecCC
Q 046427 248 DFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS-GIISQAALDVFT 310 (595)
Q Consensus 248 D~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~ 310 (595)
|+|+-|+|...+.+.-+-.+..+.++++++|... .+.+....|.+.++. .++ .++.-|.
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSn--tS~~~~~~la~~~~~p~r~--~g~Hf~~ 140 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIAST--TSTFLVTDLQRHVAHPERF--LNAHWLN 140 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEc--cccCCHHHHHhhcCCcccE--EEEecCC
Confidence 9999999999998888877777889999999443 444566677776642 344 4444443
No 278
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.28 E-value=0.0054 Score=55.31 Aligned_cols=85 Identities=20% Similarity=0.364 Sum_probs=51.6
Q ss_pred EEEEEe-CChHHHHHHHHHhc-CCCEEEE-ECCCC-c-HHHHHHc----CCc---ccC-HHHhccccCEEEEeCCCChhc
Q 046427 194 TLAVMG-FGKVGTEVARRAKG-LGMNVIA-HDPYA-Q-ADRARAT----GVG---LVS-FEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 194 tvGIIG-lG~IG~~vA~~l~~-~G~~V~~-~d~~~-~-~~~a~~~----g~~---~~~-l~ell~~aD~V~l~~Plt~~t 260 (595)
+|+||| .|.+|+.+.++|.. ..+++.. +++.. . ....... +.. ..+ -.+.+.++|+|++|+|. ..+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~-~~~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPH-GAS 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCH-HHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCch-hHH
Confidence 689999 99999999999985 4566554 33332 1 1111111 111 111 22445999999999994 323
Q ss_pred cccccHHHHhcCCCceEEEeccC
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ar 283 (595)
..+..+ + +++|+.+||.+.
T Consensus 80 ~~~~~~--~--~~~g~~ViD~s~ 98 (121)
T PF01118_consen 80 KELAPK--L--LKAGIKVIDLSG 98 (121)
T ss_dssp HHHHHH--H--HHTTSEEEESSS
T ss_pred HHHHHH--H--hhCCcEEEeCCH
Confidence 333322 1 578999999984
No 279
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.27 E-value=0.023 Score=63.02 Aligned_cols=108 Identities=21% Similarity=0.243 Sum_probs=70.3
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH------HHHHHcCCccc---CHHHhccccCEEEEeCCCChhc
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA------DRARATGVGLV---SFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t 260 (595)
+.+++++|+|+|..|.++|+.|+..|++|.++|..... ....+.|+... ...+.+.++|+|+.. |--+.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~ 90 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID 90 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence 66899999999999999999999999999999976421 22445576543 234556889999886 543322
Q ss_pred ccc-----------ccHH-HH-hcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 261 SKM-----------FNDE-AF-FKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 261 ~~l-----------i~~~-~l-~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.-. +++- .+ ...+.-.+-|--+.|+.-..+-+...|+.
T Consensus 91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 222 2221 12 22232355555557887666666666654
No 280
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.24 E-value=0.018 Score=59.29 Aligned_cols=102 Identities=23% Similarity=0.289 Sum_probs=60.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcC-CCEEEE-ECCCCcHHH-HHHc--CCcc-cCHHHhccccCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL-GMNVIA-HDPYAQADR-ARAT--GVGL-VSFEEAISTADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~-a~~~--g~~~-~~l~ell~~aD~V~l~~Plt~~t~~li~~ 266 (595)
.+|||||+|.||+.+++.+... ++++.+ +++...... .... ++.. .+++++-.+.|+|+.|.|... ...+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~-~~e~--- 77 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAA-LKEH--- 77 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHH-HHHH---
Confidence 4799999999999999999865 566543 343322221 1112 3333 378888556999999998432 2222
Q ss_pred HHHhcCCCceEEEeccCCchhcH---HHHHHHHhcC
Q 046427 267 EAFFKMKKGVRIVNVARGGVVDE---EALVRALDSG 299 (595)
Q Consensus 267 ~~l~~mk~gailiN~arg~~vd~---~aL~~aL~~g 299 (595)
....++.|.-++-.+-|.+.|. +.|.++.+++
T Consensus 78 -~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~ 112 (265)
T PRK13303 78 -VVPILKAGIDCAVISVGALADEALRERLEQAAEAG 112 (265)
T ss_pred -HHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHC
Confidence 2223455555554444544443 4466665554
No 281
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.22 E-value=0.0052 Score=50.86 Aligned_cols=59 Identities=17% Similarity=0.306 Sum_probs=39.4
Q ss_pred EEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCcHHHHHHHhc
Q 046427 525 LCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGE 583 (595)
Q Consensus 525 iv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~~e~l~~L~~ 583 (595)
-+.-+|+||+++.|++.|.++|.||.+++..+....=..++.++.+..-.+++.+.|++
T Consensus 6 tv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~ 64 (76)
T PF13740_consen 6 TVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEE 64 (76)
T ss_dssp EEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHH
T ss_pred EEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHH
Confidence 34579999999999999999999999999987654444455566663322244444443
No 282
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.22 E-value=0.016 Score=60.37 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=50.3
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHcC-----Ccc---cCHHHhccccCEEEEeCCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARATG-----VGL---VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g-----~~~---~~l~ell~~aD~V~l~~Pl 256 (595)
.+.+|++.|+|.|..|++++..|...|. +|..+|++... ..+...+ ... .++.+.++++|+|+.|+|.
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~ 202 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPT 202 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcC
Confidence 3567999999999999999999999997 79999997532 2222211 111 1345577889999999885
No 283
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.22 E-value=0.022 Score=62.30 Aligned_cols=89 Identities=24% Similarity=0.316 Sum_probs=64.2
Q ss_pred eecCCEEEEEeC----------ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCCh
Q 046427 189 SLVGKTLAVMGF----------GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 189 ~l~gktvGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~ 258 (595)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||..........+ ...++++.+++||.|+++++ .+
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~-~~~~~~~~~~~ad~~v~~t~-~~ 387 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLP-LIDDLEEALKGADALVILTD-HD 387 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcc-cCCCHHHHHhCCCEEEEecC-CH
Confidence 589999999998 3467789999999999999999987543322222 13478899999999999998 44
Q ss_pred hccccccHHHHh-cCCCceEEEec
Q 046427 259 ATSKMFNDEAFF-KMKKGVRIVNV 281 (595)
Q Consensus 259 ~t~~li~~~~l~-~mk~gailiN~ 281 (595)
+-+. ++-+.+. .|+ ..+++|+
T Consensus 388 ~~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 388 EFKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HHhc-cCHHHHHHhcC-CCEEEeC
Confidence 4443 3444444 354 4578874
No 284
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.14 E-value=0.095 Score=55.15 Aligned_cols=98 Identities=24% Similarity=0.245 Sum_probs=66.0
Q ss_pred HHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC-ChHHHHHHHHHhc
Q 046427 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF-GKVGTEVARRAKG 213 (595)
Q Consensus 135 a~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l~~ 213 (595)
+...+++|.|.-+....++ .+++=++.+.++ .| .+.|++|+++|= +++.++++..+..
T Consensus 116 a~~~~vPVINag~~~~HPt--QaL~Dl~Ti~e~------------------~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~ 174 (304)
T PRK00779 116 AEYSTVPVINGLTDLSHPC--QILADLLTIYEH------------------RG-SLKGLKVAWVGDGNNVANSLLLAAAL 174 (304)
T ss_pred HHhCCCCEEeCCCCCCChH--HHHHHHHHHHHH------------------hC-CcCCcEEEEEeCCCccHHHHHHHHHH
Confidence 4456789999865433332 222222333221 12 377899999998 7899999999999
Q ss_pred CCCEEEEECCCC--c-HHH----HHHcCCc---ccCHHHhccccCEEEEe
Q 046427 214 LGMNVIAHDPYA--Q-ADR----ARATGVG---LVSFEEAISTADFISLH 253 (595)
Q Consensus 214 ~G~~V~~~d~~~--~-~~~----a~~~g~~---~~~l~ell~~aD~V~l~ 253 (595)
+|++|....|.. . .+. +++.|.. ..++++++++||+|..-
T Consensus 175 ~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 224 (304)
T PRK00779 175 LGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTD 224 (304)
T ss_pred cCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 999999988753 1 121 3445642 24899999999999874
No 285
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.13 E-value=0.021 Score=61.06 Aligned_cols=88 Identities=25% Similarity=0.294 Sum_probs=60.7
Q ss_pred CCEEEEEeCChHHHHHHHHHh-cCCC-EEEEECCCCcH--HHH---HHcCCc--c-cCHHHhccccCEEEEeCCCChhcc
Q 046427 192 GKTLAVMGFGKVGTEVARRAK-GLGM-NVIAHDPYAQA--DRA---RATGVG--L-VSFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a---~~~g~~--~-~~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
-++++|||.|..++.-++.+. -+.. +|.+|+++... ..+ .+.++. . .++++++++||+|+.++|.+. ..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CC
Confidence 368999999999998887665 4444 79999988632 111 222432 2 379999999999999998432 22
Q ss_pred ccccHHHHhcCCCceEEEeccC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~ar 283 (595)
-++..+ .+|+|+.|.-++.
T Consensus 208 Pvl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred ceecHH---HcCCCcEEEecCC
Confidence 455554 3588987666653
No 286
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=96.05 E-value=0.12 Score=54.27 Aligned_cols=64 Identities=25% Similarity=0.348 Sum_probs=50.7
Q ss_pred eecCCEEEEEeCC---hHHHHHHHHHhcCCCEEEEECCCC---cH---HHHHHcCCc---ccCHHHhccccCEEEE
Q 046427 189 SLVGKTLAVMGFG---KVGTEVARRAKGLGMNVIAHDPYA---QA---DRARATGVG---LVSFEEAISTADFISL 252 (595)
Q Consensus 189 ~l~gktvGIIGlG---~IG~~vA~~l~~~G~~V~~~d~~~---~~---~~a~~~g~~---~~~l~ell~~aD~V~l 252 (595)
.+.|++|+++|-| ++.++++..+..||++|....|.. +. +.+++.|.. ..++++.++.||+|..
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt 222 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYV 222 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEE
Confidence 3789999999995 999999999999999999987743 21 223344653 2489999999999987
No 287
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.99 E-value=0.034 Score=61.99 Aligned_cols=101 Identities=23% Similarity=0.290 Sum_probs=70.7
Q ss_pred eecCCEEEEEeC----------ChHHHHHHHHHhcCCCEEEEECCCCcHHHHH-Hc----------------------CC
Q 046427 189 SLVGKTLAVMGF----------GKVGTEVARRAKGLGMNVIAHDPYAQADRAR-AT----------------------GV 235 (595)
Q Consensus 189 ~l~gktvGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~-~~----------------------g~ 235 (595)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||........ .. ++
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 589999999998 4467789999999999999999986443221 11 11
Q ss_pred ccc-CHHHhccccCEEEEeCCCChhccccccHHH-HhcCCCceEEEeccCCchhcHHHHH
Q 046427 236 GLV-SFEEAISTADFISLHMPLTPATSKMFNDEA-FFKMKKGVRIVNVARGGVVDEEALV 293 (595)
Q Consensus 236 ~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~-l~~mk~gailiN~arg~~vd~~aL~ 293 (595)
+.+ ++.+.+++||+|+++++ .++.+.+ +-+. ...|++..+|+|+ |+ ++|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~-~~ef~~l-~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTE-WDEFKTL-DYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCC-ChHhccc-CHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 222 56789999999999998 4445443 4333 4557766688995 53 44665543
No 288
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=95.99 E-value=0.11 Score=55.23 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=64.9
Q ss_pred eecCCEEEEEeCC--hHHHHHHHHHhcCCCEEEEECCCC--cHH--------HHHHcCCc---ccCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGFG--KVGTEVARRAKGLGMNVIAHDPYA--QAD--------RARATGVG---LVSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~--~~~--------~a~~~g~~---~~~l~ell~~aD~V~l~ 253 (595)
.+.|++|++||=+ ++.++++..+..+|++|....|.. ..+ .+.+.|.. ..++++.+++||+|..-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999986 678888999999999999988753 111 12334542 24899999999999873
Q ss_pred C----CCChh---------ccccccHHHHhcC-CCceEEEecc
Q 046427 254 M----PLTPA---------TSKMFNDEAFFKM-KKGVRIVNVA 282 (595)
Q Consensus 254 ~----Plt~~---------t~~li~~~~l~~m-k~gailiN~a 282 (595)
+ ....+ ....++.+.++.. |++++|.-|.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 2 10000 1233566777765 6788888775
No 289
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.98 E-value=0.016 Score=57.16 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=33.2
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|.+++|.|||+|.+|+.+|+.|...|. ++..+|+.
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 5899999999999999999999999997 78888875
No 290
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.97 E-value=0.015 Score=62.20 Aligned_cols=96 Identities=16% Similarity=0.268 Sum_probs=61.0
Q ss_pred CEEEEEeC-ChHHHHHHHHHhcC-CCEEEE-ECCCCc--HHHHHHc----C-----CcccCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMGF-GKVGTEVARRAKGL-GMNVIA-HDPYAQ--ADRARAT----G-----VGLVSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~~--~~~a~~~----g-----~~~~~l~ell~~aD~V~l~~Plt~ 258 (595)
++|+|+|. |.+|+.+++.+..+ +.++.. +++... ....... + +...+.++++.++|+|++|+|. .
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~-~ 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPH-G 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCc-h
Confidence 47999998 99999999999977 678774 464331 1111111 1 1122556777789999999994 3
Q ss_pred hccccccHHHHhcCCCceEEEeccCCchhcHHHHH
Q 046427 259 ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALV 293 (595)
Q Consensus 259 ~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~ 293 (595)
....+..+ ..+.|+.+||.|..--.+..+++
T Consensus 80 ~s~~~~~~----~~~~G~~VIDlS~~fR~~~~~~y 110 (346)
T TIGR01850 80 VSAELAPE----LLAAGVKVIDLSADFRLKDPEVY 110 (346)
T ss_pred HHHHHHHH----HHhCCCEEEeCChhhhcCChhhh
Confidence 34433322 13578999999854444533333
No 291
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.013 Score=58.90 Aligned_cols=64 Identities=30% Similarity=0.360 Sum_probs=46.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHH--cCCccc--------CHHHh-ccccCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARA--TGVGLV--------SFEEA-ISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~--~g~~~~--------~l~el-l~~aD~V~l~~Pl 256 (595)
+++.|+|+|++|+.+|+.|...|++|+..|.+... ....+ .++..+ .|.++ +.++|+++.++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence 57999999999999999999999999999987632 22112 332211 25555 6778888877764
No 292
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.94 E-value=0.02 Score=58.77 Aligned_cols=112 Identities=21% Similarity=0.227 Sum_probs=70.2
Q ss_pred EEEEeC-ChHHHHHHHHHhcCC----CEEEEECCCCcH--HHHH-------Hc-C--Ccc-cCHHHhccccCEEEEeCCC
Q 046427 195 LAVMGF-GKVGTEVARRAKGLG----MNVIAHDPYAQA--DRAR-------AT-G--VGL-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 195 vGIIGl-G~IG~~vA~~l~~~G----~~V~~~d~~~~~--~~a~-------~~-g--~~~-~~l~ell~~aD~V~l~~Pl 256 (595)
|+|||. |.+|..+|..+...| .++..||.+... .... .. . +.. .++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999988777 789999976521 1111 11 1 111 2567999999999996521
Q ss_pred C--h---------hcccccc--HHHHhcCCCceEEEeccCCchhc--HHHHHHH--HhcCCeeEEE-Eec
Q 046427 257 T--P---------ATSKMFN--DEAFFKMKKGVRIVNVARGGVVD--EEALVRA--LDSGIISQAA-LDV 308 (595)
Q Consensus 257 t--~---------~t~~li~--~~~l~~mk~gailiN~arg~~vd--~~aL~~a--L~~g~i~ga~-lDv 308 (595)
. + .+..++. .+.+....|.++++|++ ..+| ...+.+. +...++.|.+ +|.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~ 148 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDP 148 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence 1 0 1111111 12344456899999995 4444 3344444 4666788887 775
No 293
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.92 E-value=0.028 Score=51.08 Aligned_cols=100 Identities=22% Similarity=0.291 Sum_probs=57.6
Q ss_pred EEEEEeC-ChHHHHHHHHHhc-CCCEEEE-ECCCCcH----HHHH-----HcCCcc-cCHHHhccccCEEEEeCCCChhc
Q 046427 194 TLAVMGF-GKVGTEVARRAKG-LGMNVIA-HDPYAQA----DRAR-----ATGVGL-VSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 194 tvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~~~----~~a~-----~~g~~~-~~l~ell~~aD~V~l~~Plt~~t 260 (595)
+|+|+|+ |+||+.+++.+.. -++++.+ +|+..+. +... ..++.. .++++++.++|+++-.. +|+.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~~ 79 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPDA 79 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChHH
Confidence 7999999 9999999999996 7888665 5665411 1111 223332 37999999999998877 4433
Q ss_pred cccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
..-.-+.. ++.|.-+|-...|---.+.+.++.+.+
T Consensus 80 ~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 80 VYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred hHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 22211222 344666666556654333344444433
No 294
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.91 E-value=0.0076 Score=51.21 Aligned_cols=49 Identities=27% Similarity=0.234 Sum_probs=38.3
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE 572 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~ 572 (595)
+.+.+..+|+||+++.|++.|+++|+||.+++... .++.-.+.+.++-+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~--~~~~f~~~~~v~~~ 50 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTI--MDGYFTMIMIVDIS 50 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh--hCCccEEEEEEEeC
Confidence 35667789999999999999999999999998864 34555655555543
No 295
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.90 E-value=0.062 Score=57.77 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=88.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcC---------------------Ccc-cCHHHhccccCEE
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG---------------------VGL-VSFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g---------------------~~~-~~l~ell~~aD~V 250 (595)
++|.|+|.|-+|...+..+..+|++|+.+|.....-.....| ... .+.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 479999999999999999999999999998654221111111 111 2678899999999
Q ss_pred EEeCCCChhccccccH--------HHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEe-cCCCCCCCCCcccc
Q 046427 251 SLHMPLTPATSKMFND--------EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALD-VFTEEPPAKDSKLV 321 (595)
Q Consensus 251 ~l~~Plt~~t~~li~~--------~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lD-v~~~EP~~~~~~L~ 321 (595)
++|+|..+.-.+-++. +....++..+++|+=|+-.+=..+.+.+-+....-.. -.+ +|.+|=+-..+-+.
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~ 159 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY 159 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh
Confidence 9999955443444432 3445677779999998866655555555444332211 222 25556554333333
Q ss_pred c---CCcEEEcCCCCCCcHH
Q 046427 322 L---HENVTVTPHLGASTTE 338 (595)
Q Consensus 322 ~---~~nvilTPHi~~~t~e 338 (595)
+ -++++ +|..+++
T Consensus 160 D~~~PdRIV----iG~~~~~ 175 (414)
T COG1004 160 DFLYPDRIV----IGVRSER 175 (414)
T ss_pred hccCCCeEE----EccCChh
Confidence 3 34554 4555554
No 296
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.86 E-value=0.054 Score=59.58 Aligned_cols=108 Identities=21% Similarity=0.218 Sum_probs=67.0
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEE-ECCC-------C-cHHHH------HH-------------cCCccc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA-HDPY-------A-QADRA------RA-------------TGVGLV 238 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~-------~-~~~~a------~~-------------~g~~~~ 238 (595)
+.+|.|||+.|=|+|++|+..|+.|..+|.+|++ .|.+ - +.+.. ++ .+.+++
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 4579999999999999999999999999999994 3433 1 11111 00 022333
Q ss_pred CHHHhc-cccCEEEEeCCCChhccccccHHHHhcC-CCceEEEecc-CCchhcHHHHHHHHhcCCe
Q 046427 239 SFEEAI-STADFISLHMPLTPATSKMFNDEAFFKM-KKGVRIVNVA-RGGVVDEEALVRALDSGII 301 (595)
Q Consensus 239 ~l~ell-~~aD~V~l~~Plt~~t~~li~~~~l~~m-k~gailiN~a-rg~~vd~~aL~~aL~~g~i 301 (595)
+-++++ -.||+.+-|. +.+.|+.+....+ +.++.+|--+ -+.+ ..+| .+.|.+..|
T Consensus 312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~eA-~~~L~~~GI 370 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT-TIEA-THLFKKNGV 370 (454)
T ss_pred CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC-CHHH-HHHHHHCCc
Confidence 333444 3688887775 5677777766655 4455555444 4444 4443 344554444
No 297
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.85 E-value=0.034 Score=58.43 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=57.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcHHH--HHHc-------CC--cc-cCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQADR--ARAT-------GV--GL-VSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~--a~~~-------g~--~~-~~l~ell~~aD~V~l~~Plt~ 258 (595)
++|+|||.|.+|+.+|..+...| .++..+|++..... +.++ +. .. ..-.+.+++||+|+++.....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 47999999999999999999888 48999998763221 1111 11 11 122345789999999987532
Q ss_pred h---cc-ccc--c-------HHHHhcCCCceEEEecc
Q 046427 259 A---TS-KMF--N-------DEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 259 ~---t~-~li--~-------~~~l~~mk~gailiN~a 282 (595)
. ++ +++ | ...+....|.+++++++
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 1 11 111 0 11244456677888876
No 298
>PLN02527 aspartate carbamoyltransferase
Probab=95.83 E-value=0.19 Score=52.88 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=49.0
Q ss_pred eecCCEEEEEeCC---hHHHHHHHHHhcC-CCEEEEECCCC---cHH---HHHHcCCcc---cCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGFG---KVGTEVARRAKGL-GMNVIAHDPYA---QAD---RARATGVGL---VSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGlG---~IG~~vA~~l~~~-G~~V~~~d~~~---~~~---~a~~~g~~~---~~l~ell~~aD~V~l~ 253 (595)
.+.|++|++||-+ ++..+++..+..+ |++|....|.. +.+ .+++.|... .++++.+++||+|..-
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 225 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQT 225 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEEC
Confidence 3789999999975 6899999998887 99998877643 211 233345432 4899999999999884
No 299
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.82 E-value=0.02 Score=64.12 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=69.2
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc---CHHHhccccCEEEEeCCCChhcc----
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV---SFEEAISTADFISLHMPLTPATS---- 261 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~---- 261 (595)
+.|+++.|+|+|.+|.+.++.|+..|.+|+++|.... ...+++.|+... ...+.++++|+|+.+-...+...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 4689999999999999999999999999999996542 223455676543 23456778998888654333211
Q ss_pred ------ccccHHHHh-cC-C------C-ceEEEeccCCchhcHHHHHHHHhc
Q 046427 262 ------KMFNDEAFF-KM-K------K-GVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 262 ------~li~~~~l~-~m-k------~-gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.++++-++. .+ + + ..+-|--+-|+.-...-+.+.|+.
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 122222232 11 0 2 234444457887666666666654
No 300
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.81 E-value=0.018 Score=63.21 Aligned_cols=67 Identities=22% Similarity=0.221 Sum_probs=46.6
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHH-HHcCCc-ccCHHHhccccCEEEEeCCCCh
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA-RATGVG-LVSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a-~~~g~~-~~~l~ell~~aD~V~l~~Plt~ 258 (595)
.++|.|||+|.+|.++|+.++..|++|.++|++...... ....-. ....+.+..++|+|+.+.+..+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~ 71 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKK 71 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCC
Confidence 468999999999999999999999999999976532110 000001 1123345578999988876553
No 301
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=95.81 E-value=0.096 Score=49.72 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=65.9
Q ss_pred cCCEEEEEeC--ChHHHHHHHHHhcCCCEEEEECCCC---cH--H-------HHHHcCC--cc-cCHHHhccccCEEEEe
Q 046427 191 VGKTLAVMGF--GKVGTEVARRAKGLGMNVIAHDPYA---QA--D-------RARATGV--GL-VSFEEAISTADFISLH 253 (595)
Q Consensus 191 ~gktvGIIGl--G~IG~~vA~~l~~~G~~V~~~d~~~---~~--~-------~a~~~g~--~~-~~l~ell~~aD~V~l~ 253 (595)
.|++|++||= +++..+++..+..||+++....|.. .. + .+.+.|. .. .++++.++++|+|..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 4889999993 8999999999999999999988754 12 1 1122343 22 3899999999999876
Q ss_pred CCC----Chh-------ccccccHHHHhcCCCceEEEecc
Q 046427 254 MPL----TPA-------TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 254 ~Pl----t~~-------t~~li~~~~l~~mk~gailiN~a 282 (595)
.-- .+. ....++++.++.+|++++|.-|.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 543 110 11456888888888899998887
No 302
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.80 E-value=0.05 Score=57.04 Aligned_cols=62 Identities=21% Similarity=0.357 Sum_probs=43.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHHHHH-----c----CC--c--c-cCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADRARA-----T----GV--G--L-VSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~-----~----g~--~--~-~~l~ell~~aD~V~l~~P 255 (595)
++|+|||.|.+|..+|..+...|. +|..||.......... . +. + . .+. +.+++||+|++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 589999999999999999987654 9999998653221111 1 11 1 1 235 45899999999863
No 303
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.80 E-value=0.031 Score=60.39 Aligned_cols=88 Identities=22% Similarity=0.188 Sum_probs=62.4
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC-CEEEEECCCC-cHHHHHHcC---Ccc--------cCHHHhccccCEEEEeCCCChh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG-MNVIAHDPYA-QADRARATG---VGL--------VSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~-~~~~a~~~g---~~~--------~~l~ell~~aD~V~l~~Plt~~ 259 (595)
+++.|||.|.||+.+|..|.+.| .+|++.|+.. ...++.... ++. ..+.+++++.|+|+.|+|..-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~- 80 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV- 80 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh-
Confidence 57999999999999999999888 8999999985 333333332 221 147789999999999999543
Q ss_pred ccccccHHHHhcCCCceEEEeccCCc
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~arg~ 285 (595)
+..++ -+.++.|.-.+|++=..
T Consensus 81 ~~~i~----ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 81 DLTIL----KACIKTGVDYVDTSYYE 102 (389)
T ss_pred hHHHH----HHHHHhCCCEEEcccCC
Confidence 22221 13357777788877444
No 304
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=95.78 E-value=0.19 Score=52.92 Aligned_cols=93 Identities=24% Similarity=0.252 Sum_probs=62.6
Q ss_pred ecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC--c-HHH-------HHHcCCc---ccCHHHhccccCEEEEeC-
Q 046427 190 LVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA--Q-ADR-------ARATGVG---LVSFEEAISTADFISLHM- 254 (595)
Q Consensus 190 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~--~-~~~-------a~~~g~~---~~~l~ell~~aD~V~l~~- 254 (595)
+.|.+|+++|- +++-++++..+..||++|....|.. . ... +.+.|.. ..++++.+++||+|..-.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 78899999997 7899999999999999999987643 1 111 2334532 248999999999998842
Q ss_pred -CCCh----------hccccccHHHHhcCCCceEEEecc
Q 046427 255 -PLTP----------ATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 255 -Plt~----------~t~~li~~~~l~~mk~gailiN~a 282 (595)
.... -....++++.++.+|+++++.-|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL 264 (304)
T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence 1000 012245556666666666666554
No 305
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.74 E-value=0.02 Score=60.78 Aligned_cols=61 Identities=33% Similarity=0.445 Sum_probs=46.7
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHH-HHcC-C--ccc---CHHHhccccCEEEE
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA-RATG-V--GLV---SFEEAISTADFISL 252 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a-~~~g-~--~~~---~l~ell~~aD~V~l 252 (595)
++||||||-|..|+.++..++.+|++|++.||....... .... + .+. .+.++.+.||+|+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 479999999999999999999999999999987632111 1111 1 111 48899999999976
No 306
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.72 E-value=0.053 Score=57.46 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=45.8
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHHHHH---------cC----Ccc-cCHHHhccccCEEEEeC
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADRARA---------TG----VGL-VSFEEAISTADFISLHM 254 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~---------~g----~~~-~~l~ell~~aD~V~l~~ 254 (595)
++.++|+|||.|.+|..+|..+...|. +|..+|.+.....+.. .+ +.. .+. +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 445799999999999999999887774 8999998664221111 11 111 245 5679999999977
No 307
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=95.70 E-value=0.25 Score=52.77 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=49.1
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC---cHHH-------HHHcCC--c-ccCHHHhccccCEEEE
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA---QADR-------ARATGV--G-LVSFEEAISTADFISL 252 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~---~~~~-------a~~~g~--~-~~~l~ell~~aD~V~l 252 (595)
.+.|++|++||= .++..+++..+..+|++|..+.|.. +... +...|. . ..++++.+++||+|..
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~ 228 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYT 228 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEE
Confidence 488999999997 6888999999999999999988753 2111 112353 2 2489999999999988
No 308
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.62 E-value=0.042 Score=48.59 Aligned_cols=84 Identities=21% Similarity=0.439 Sum_probs=56.6
Q ss_pred EEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc-----C---HHH-hccccCEEEEeCCCChhccccc
Q 046427 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV-----S---FEE-AISTADFISLHMPLTPATSKMF 264 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-----~---l~e-ll~~aD~V~l~~Plt~~t~~li 264 (595)
+.|+|+|.+|+.+++.|+..+.+|++.|.+. ..+.+.+.|+... + |.+ -+++||.|+++++... .++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~--~n~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDE--ENLL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHH--HHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHH--HHHH
Confidence 5699999999999999999777999999876 3455666676432 2 332 3688999999998543 3333
Q ss_pred cHHHHhcCCCceEEEe
Q 046427 265 NDEAFFKMKKGVRIVN 280 (595)
Q Consensus 265 ~~~~l~~mk~gailiN 280 (595)
-...++.+-+...++-
T Consensus 79 ~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 79 IALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHCCCCeEEE
Confidence 3334444555555553
No 309
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.62 E-value=0.13 Score=54.04 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=47.9
Q ss_pred ecCCEEEEEeC---ChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCc-ccCHHHhccccCEEEEe
Q 046427 190 LVGKTLAVMGF---GKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVG-LVSFEEAISTADFISLH 253 (595)
Q Consensus 190 l~gktvGIIGl---G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~-~~~l~ell~~aD~V~l~ 253 (595)
+.|++|++||- +++..+++..+..||+++....|.. ..... ..+. ..++++.+++||+|..-
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~--~~~~~~~d~~ea~~~aDvvyt~ 220 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGM--PEYGVHTDLDEVIEDADVVMML 220 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccc--cceEEECCHHHHhCCCCEEEEC
Confidence 78999999988 5899999999999999999988754 11110 0112 34799999999999874
No 310
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=95.60 E-value=0.033 Score=49.59 Aligned_cols=106 Identities=16% Similarity=0.224 Sum_probs=70.0
Q ss_pred ccccccHHHHHhhCCceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEEEEeCCeeEEEEEcceEEEe
Q 046427 438 FVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDV 517 (595)
Q Consensus 438 ~vn~~nA~~iA~e~GI~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~GSvgGG~i~I~~Idgf~v~~ 517 (595)
.-|+.++....+|.||+++--+.-..+ .|.-+-++-.+.+ +. -+..+=-||-|..
T Consensus 14 ~GRL~~~~~~L~eagINiRA~tiAdt~---dFGIiRmvV~~~d-----------~A-----------~~~Lee~gF~Vr~ 68 (142)
T COG4747 14 PGRLASVANKLKEAGINIRAFTIADTG---DFGIIRMVVDRPD-----------EA-----------HSVLEEAGFTVRE 68 (142)
T ss_pred cchHHHHHHHHHHcCCceEEEEecccc---CcceEEEEcCChH-----------HH-----------HHHHHHCCcEEEe
Confidence 357888999999999999754332221 3332322221100 00 0011112344433
Q ss_pred ecCccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC
Q 046427 518 SLEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE 572 (595)
Q Consensus 518 ~~~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~ 572 (595)
+ ..|-+.-.|+||-+.+|...|++++||+-++.-+-.++ +.|+.++.+++-
T Consensus 69 ~---dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~ed~ 119 (142)
T COG4747 69 T---DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRVEDI 119 (142)
T ss_pred e---eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEEhhHH
Confidence 2 45677889999999999999999999999998886666 789999998764
No 311
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.60 E-value=0.046 Score=56.07 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=45.7
Q ss_pred CEEEEEeC-ChHHHHHHHHHhc-CCCEEEE-ECCCCcHH-HHHHcCCc-ccCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGF-GKVGTEVARRAKG-LGMNVIA-HDPYAQAD-RARATGVG-LVSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~~~~-~a~~~g~~-~~~l~ell~~aD~V~l~~P 255 (595)
.+|+|+|+ |+||+.+++.+.. -++++.+ +|+..... .....++. ..+++++++.+|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 37999998 9999999999885 4788776 77654211 11233442 3478999989999998875
No 312
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.59 E-value=0.043 Score=45.62 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=44.9
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecC-CCcEEEEEEcCCCC-cH---HHHHHHhcCCCcceEEE
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAP-QKQAVMTIGVDEEP-SR---EVLKKIGETPAIEEFVF 592 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~-g~~al~vi~~d~~~-~~---e~l~~L~~~~~v~~v~~ 592 (595)
.+.+..+|+||.++.+.+.+++++|||..+....... .......++++... .+ ++++.|++. ..++++
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~--~~~~~~ 75 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRL--TEFVKV 75 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh--CCeEEE
Confidence 4566778999999999999999999999997543322 22334446666542 22 456666552 334544
No 313
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.58 E-value=0.032 Score=58.22 Aligned_cols=46 Identities=24% Similarity=0.464 Sum_probs=37.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cH-HHHHHcCCc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QA-DRARATGVG 236 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~-~~a~~~g~~ 236 (595)
-|+.+||+|+|-+|.--.+.+++|||+|+++|... .. +..+.+|.+
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd 228 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGAD 228 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcc
Confidence 79999999999999988888999999999999875 33 333446653
No 314
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.49 E-value=0.051 Score=55.28 Aligned_cols=113 Identities=21% Similarity=0.228 Sum_probs=73.8
Q ss_pred HHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCC-cH--H----HHHHc
Q 046427 162 TAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYA-QA--D----RARAT 233 (595)
Q Consensus 162 l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~--~----~a~~~ 233 (595)
.+.+|++-++.++ .|.+|+..|++|+|+ |.||..+|+.+.+.+.+....-+.. .. + .-.++
T Consensus 148 yaa~r~Vl~~~~~-----------lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~ 216 (351)
T COG5322 148 YAACRQVLKHFAQ-----------LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEEL 216 (351)
T ss_pred HHHHHHHHHHHHH-----------hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhccccc
Confidence 4566777665532 488999999999998 9999999999998877655443221 11 1 11223
Q ss_pred CCc-ccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhcHH
Q 046427 234 GVG-LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEE 290 (595)
Q Consensus 234 g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd~~ 290 (595)
|-. ..+++..+.+.|+++-... ++ +-..|+.. .+|||+.++|-++-.=+|+.
T Consensus 217 ~~~~i~s~d~~~~~e~i~v~vAs-~~-~g~~I~pq---~lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 217 GRGKIMSLDYALPQEDILVWVAS-MP-KGVEIFPQ---HLKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred CCCeeeeccccccccceEEEEee-cC-CCceechh---hccCCeEEEcCCcCcccccc
Confidence 332 3467766666666655443 22 34455554 47999999999987765543
No 315
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.43 E-value=0.066 Score=43.74 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=45.0
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC----CC-cHHHHHHHhc
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE----EP-SREVLKKIGE 583 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~----~~-~~e~l~~L~~ 583 (595)
..+.+..+|+||.+..++..|..+++||...++... .++.++-++.+.. ++ +++.++++++
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~-~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~ 67 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVLDPDGEPIGERERLARIRE 67 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe-CCCeEEEEEEEECCCCCCCChHHHHHHHHH
Confidence 356788899999999999999999999999998754 3456766666522 23 4555565543
No 316
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=95.40 E-value=0.0091 Score=59.20 Aligned_cols=132 Identities=23% Similarity=0.230 Sum_probs=81.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHH-----------cC-C-------c-----------ccC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARA-----------TG-V-------G-----------LVS 239 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~-----------~g-~-------~-----------~~~ 239 (595)
.=+.|+|||.|.||+.+|+.+...|+.|+.+|.+.. ..++.+ .+ . + ..+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 346799999999999999999999999999998752 121110 00 0 0 114
Q ss_pred HHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEE-eccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCc
Q 046427 240 FEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIV-NVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDS 318 (595)
Q Consensus 240 l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gaili-N~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~ 318 (595)
+.++++++|+|+=++-.+.+.+.-+-++.=...|+.++++ |+++ +...++..+++...- .+||..|.+-|..
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvPvM--- 162 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVPVM--- 162 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCchhH---
Confidence 5667777888776654333222222222223367777664 6654 345566777666532 4888888876542
Q ss_pred ccccCCcEEEcCCC
Q 046427 319 KLVLHENVTVTPHL 332 (595)
Q Consensus 319 ~L~~~~nvilTPHi 332 (595)
.|. .||=|+..
T Consensus 163 KLv---EVir~~~T 173 (298)
T KOG2304|consen 163 KLV---EVIRTDDT 173 (298)
T ss_pred HHh---hhhcCCCC
Confidence 344 46677754
No 317
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=95.37 E-value=0.16 Score=54.13 Aligned_cols=65 Identities=28% Similarity=0.315 Sum_probs=49.7
Q ss_pred eecCCEEEEEeCC--hHHHHHHHHHhcCCCEEEEECCCC--c-H-------HHHHHcCC--cc-cCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGFG--KVGTEVARRAKGLGMNVIAHDPYA--Q-A-------DRARATGV--GL-VSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~--~-~-------~~a~~~g~--~~-~~l~ell~~aD~V~l~ 253 (595)
.+.|++|++||-+ ++..+++..+..+|+++....|.. . . +.+++.|. .. .++++.+++||+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 4788999999976 689999999999999999987743 1 1 11233453 22 4899999999999884
No 318
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=95.36 E-value=0.042 Score=51.82 Aligned_cols=69 Identities=9% Similarity=0.214 Sum_probs=59.9
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC-CcHHHHHHHhcCCCcceEEE
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE-PSREVLKKIGETPAIEEFVF 592 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~-~~~e~l~~L~~~~~v~~v~~ 592 (595)
|-+...++||++..++.+++++|.||.+.|.+-.+.|+.++..+++..- -.++++++++..+.|.+++.
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~d~e~l~~~lks~d~v~ev~i 74 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGIDDFEKLLERLKSFDYVIEVEI 74 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCCCHHHHHHHhhccceEEEeee
Confidence 3456678999999999999999999999999988888899999999885 45689999999998887754
No 319
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.35 E-value=0.043 Score=58.64 Aligned_cols=62 Identities=21% Similarity=0.366 Sum_probs=40.0
Q ss_pred EEEEEeCChHHHHHHHHHhc-CCCEEEEE-CCCCcHH--HHHHcCC------------------cc-cCHHHhccccCEE
Q 046427 194 TLAVMGFGKVGTEVARRAKG-LGMNVIAH-DPYAQAD--RARATGV------------------GL-VSFEEAISTADFI 250 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~~~~~~--~a~~~g~------------------~~-~~l~ell~~aD~V 250 (595)
+|||+|+|+||+.+++.+.. -++++.+. |+..... .+...|+ .. .++++++.++|+|
T Consensus 3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVV 82 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIV 82 (341)
T ss_pred EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEE
Confidence 79999999999999998875 46888774 5332111 1222221 11 1456666777777
Q ss_pred EEeCC
Q 046427 251 SLHMP 255 (595)
Q Consensus 251 ~l~~P 255 (595)
+.|+|
T Consensus 83 IdaT~ 87 (341)
T PRK04207 83 VDATP 87 (341)
T ss_pred EECCC
Confidence 77776
No 320
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=95.32 E-value=0.085 Score=58.12 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=64.4
Q ss_pred eeeecCCEEEEEeC----------ChHHHHHHHHHhcCCCEEEEECCCCcHHHH-HHcCCcccCHHH-hccccCEEEEeC
Q 046427 187 GVSLVGKTLAVMGF----------GKVGTEVARRAKGLGMNVIAHDPYAQADRA-RATGVGLVSFEE-AISTADFISLHM 254 (595)
Q Consensus 187 g~~l~gktvGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a-~~~g~~~~~l~e-ll~~aD~V~l~~ 254 (595)
+..+.|++|+|+|+ ..-+..+++.|...|.+|.+|||+...+.. ...+.. .+++ .++.||.|++++
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~--~~~~~~~~~ad~vvi~t 386 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGII--PVSEVKSSHYDAIIVAV 386 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcc--cchhhhhcCCCEEEEcc
Confidence 44689999999999 346788999999999999999998543322 223322 1222 467899999999
Q ss_pred CCChhccccccHHHHh-cCCCceEEEeccCCch
Q 046427 255 PLTPATSKMFNDEAFF-KMKKGVRIVNVARGGV 286 (595)
Q Consensus 255 Plt~~t~~li~~~~l~-~mk~gailiN~arg~~ 286 (595)
. .++-+. ++-+.+. .||...+|+|+ |+-+
T Consensus 387 ~-h~~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 387 G-HQQFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred C-CHHhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 8 444443 4444443 45544688884 5544
No 321
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.31 E-value=0.042 Score=58.66 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=32.9
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|++++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5899999999999999999999999997 78888875
No 322
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.30 E-value=0.058 Score=59.21 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=61.4
Q ss_pred eeeecCCEEEEEeC----------ChHHHHHHHHHhcCC-CEEEEECCCCcHHHH-HHcCCcccCHHHhccccCEEEEeC
Q 046427 187 GVSLVGKTLAVMGF----------GKVGTEVARRAKGLG-MNVIAHDPYAQADRA-RATGVGLVSFEEAISTADFISLHM 254 (595)
Q Consensus 187 g~~l~gktvGIIGl----------G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a-~~~g~~~~~l~ell~~aD~V~l~~ 254 (595)
+.++.|++|+|+|+ ..-...+++.|+..| .+|.+|||....... ....+...++++.++.||+|++++
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 45689999999998 346778999999986 999999998643211 111233458999999999999999
Q ss_pred CCChhccccccHHHHhcCCCceEEEe
Q 046427 255 PLTPATSKMFNDEAFFKMKKGVRIVN 280 (595)
Q Consensus 255 Plt~~t~~li~~~~l~~mk~gailiN 280 (595)
+ .++-+. ++-+. |+. .+++|
T Consensus 395 ~-~~~~~~-~~~~~---~~~-~~v~D 414 (415)
T PRK11064 395 D-HSQFKA-INGDN---VHQ-QWVVD 414 (415)
T ss_pred C-CHHhcc-CCHHH---hCC-CEEEe
Confidence 8 443433 34333 333 36666
No 323
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=95.28 E-value=0.19 Score=53.50 Aligned_cols=64 Identities=31% Similarity=0.383 Sum_probs=49.5
Q ss_pred ecCCEEEEEeCC--hHHHHHHHHHhcCCCEEEEECCCC---cHH-------HHHHcCCc---ccCHHHhccccCEEEEe
Q 046427 190 LVGKTLAVMGFG--KVGTEVARRAKGLGMNVIAHDPYA---QAD-------RARATGVG---LVSFEEAISTADFISLH 253 (595)
Q Consensus 190 l~gktvGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~---~~~-------~a~~~g~~---~~~l~ell~~aD~V~l~ 253 (595)
+.|++|++||-+ ++.++++..+..||++|....|.. ..+ .++..|.. ..++++++++||+|..-
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 789999999997 789999999999999999887643 111 12234543 24799999999999884
No 324
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.28 E-value=0.035 Score=61.18 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=50.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHH-cCCcc--------cCHHHh-ccccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARA-TGVGL--------VSFEEA-ISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~-~g~~~--------~~l~el-l~~aD~V~l~~Plt~ 258 (595)
+++.|+|+|.+|+.+|+.|...|.+|+++|++.. .+...+ .++.. ..++++ +.++|.|+++++...
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 4789999999999999999999999999998663 233333 44422 135566 889999999998544
No 325
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.25 E-value=0.024 Score=57.00 Aligned_cols=90 Identities=23% Similarity=0.232 Sum_probs=58.5
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-c-----HHH---HHHcC-----------------Cc-----
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-Q-----ADR---ARATG-----------------VG----- 236 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~-----~~~---a~~~g-----------------~~----- 236 (595)
.|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.. . ... ....| ++
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 5889999999999999999999999997 677777542 0 000 00111 11
Q ss_pred -cc---CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 237 -LV---SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 237 -~~---~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.. +++++++++|+|+.|+. +.+++.++++...+ .+.-+|+++
T Consensus 98 ~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g 143 (228)
T cd00757 98 ERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA 143 (228)
T ss_pred ceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 01 24467778888888776 55667666655443 344566654
No 326
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.23 E-value=0.46 Score=48.57 Aligned_cols=160 Identities=14% Similarity=0.072 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCC-----------EEEEE
Q 046427 153 AAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM-----------NVIAH 221 (595)
Q Consensus 153 vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-----------~V~~~ 221 (595)
+|--+++-+++.+| ..|..|...++.|+|.|.-|-.+|+.+...+. +++.+
T Consensus 4 TaaV~lAgllnAlk------------------~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~v 65 (254)
T cd00762 4 TASVAVAGLLAALK------------------VTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXV 65 (254)
T ss_pred hHHHHHHHHHHHHH------------------HhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEE
Confidence 45566777777777 23456888999999999999999999987654 68888
Q ss_pred CCCC---------cH--HH---HHHcCCcccCHHHhcc--ccCEEEEeCCCChhccccccHHHHhcCC---CceEEEecc
Q 046427 222 DPYA---------QA--DR---ARATGVGLVSFEEAIS--TADFISLHMPLTPATSKMFNDEAFFKMK---KGVRIVNVA 282 (595)
Q Consensus 222 d~~~---------~~--~~---a~~~g~~~~~l~ell~--~aD~V~l~~Plt~~t~~li~~~~l~~mk---~gailiN~a 282 (595)
|+.- .. .. .....-...+|.|+++ +.|+++=.. ..-+++.++.++.|. +..+|.=.|
T Consensus 66 D~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLS 141 (254)
T cd00762 66 DRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFALS 141 (254)
T ss_pred CCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEECC
Confidence 8641 11 01 1111112348999999 999997643 235799999999998 888999888
Q ss_pred CCch---hcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCC
Q 046427 283 RGGV---VDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGA 334 (595)
Q Consensus 283 rg~~---vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~ 334 (595)
.-.. +..++.+++=+...|.+.|.-.+.++--......=+.-|+++-|-++-
T Consensus 142 NPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGigl 196 (254)
T cd00762 142 NPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVAL 196 (254)
T ss_pred CcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhh
Confidence 6443 245555666555567666653333331111111124568888887763
No 327
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.21 E-value=0.065 Score=48.14 Aligned_cols=99 Identities=22% Similarity=0.319 Sum_probs=64.9
Q ss_pred CEEEEEe----CChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCc-ccCHHHhccccCEEEEeCCCChhccccccHH
Q 046427 193 KTLAVMG----FGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG-LVSFEEAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 193 ktvGIIG----lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
|+++||| -+..|..+.+.++..|++|+..+|.... -.|.. +.+++|.-...|++++++| .+.+..++.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~----i~G~~~y~sl~e~p~~iDlavv~~~-~~~~~~~v~~- 74 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE----ILGIKCYPSLAEIPEPIDLAVVCVP-PDKVPEIVDE- 74 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE----ETTEE-BSSGGGCSST-SEEEE-S--HHHHHHHHHH-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE----ECcEEeeccccCCCCCCCEEEEEcC-HHHHHHHHHH-
Confidence 6899999 7899999999999999999999986521 12443 3478884488999999999 4445555543
Q ss_pred HHhcCCCceEEEeccCCchhcHHHHHHHHhcCCee
Q 046427 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGIIS 302 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ 302 (595)
+..+....+++..+ ...+++.+.+++..+.
T Consensus 75 -~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 75 -AAALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred -HHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 23346678888876 4566677777776553
No 328
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.19 E-value=0.29 Score=53.80 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=49.7
Q ss_pred eecCCEEEEEeC---ChHHHHHHHHHhcC-CCEEEEECCCC---cHH---HHHHcCC--c-ccCHHHhccccCEEEEeC
Q 046427 189 SLVGKTLAVMGF---GKVGTEVARRAKGL-GMNVIAHDPYA---QAD---RARATGV--G-LVSFEEAISTADFISLHM 254 (595)
Q Consensus 189 ~l~gktvGIIGl---G~IG~~vA~~l~~~-G~~V~~~d~~~---~~~---~a~~~g~--~-~~~l~ell~~aD~V~l~~ 254 (595)
.+.|++|++||- +++..+++..+..+ ||+|....|.. +.+ .+.+.|. + ..++++.+++||+|....
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR 316 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 378999999999 48999999988876 99999887743 111 2233353 2 248999999999999843
No 329
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.19 E-value=0.3 Score=51.61 Aligned_cols=148 Identities=19% Similarity=0.227 Sum_probs=102.2
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HH--H-HHcCCc---ccCHHHhc---cccCEEEEeCCCChhcccc
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DR--A-RATGVG---LVSFEEAI---STADFISLHMPLTPATSKM 263 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~--a-~~~g~~---~~~l~ell---~~aD~V~l~~Plt~~t~~l 263 (595)
.+|.|||+.||+.++..+...|+.|.+|++..+. +. + ++.|.. ..++++++ +.--.|++.+---.-...+
T Consensus 8 digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~~ 87 (487)
T KOG2653|consen 8 DIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQF 87 (487)
T ss_pred chhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHHH
Confidence 5899999999999999999999999999997632 11 1 122322 23777774 5566777766443333334
Q ss_pred ccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHHHHH
Q 046427 264 FNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGV 343 (595)
Q Consensus 264 i~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~~~~ 343 (595)
| ++....|.+|-+|||-+-..--|+..=.+.|....|-..|.-|.+.|--... -|-+ +-+.+.+++.++
T Consensus 88 I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~-----GPSl-----MpGg~~~Awp~i 156 (487)
T KOG2653|consen 88 I-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARY-----GPSL-----MPGGSKEAWPHI 156 (487)
T ss_pred H-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccccccc-----CCcc-----CCCCChHHHHHH
Confidence 4 4566779999999999988888888878888777777899999988843222 2322 335567777665
Q ss_pred HHHHHHHHHH
Q 046427 344 AIEIAEAVIG 353 (595)
Q Consensus 344 ~~~~~~~l~~ 353 (595)
..+.+.|..
T Consensus 157 -k~ifq~iaa 165 (487)
T KOG2653|consen 157 -KDIFQKIAA 165 (487)
T ss_pred -HHHHHHHHH
Confidence 445555533
No 330
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.18 E-value=0.74 Score=47.72 Aligned_cols=184 Identities=17% Similarity=0.148 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcC----CC-------EEEEE
Q 046427 153 AAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGL----GM-------NVIAH 221 (595)
Q Consensus 153 vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~----G~-------~V~~~ 221 (595)
+|--+++-+++.+|- .|..|...+|.|+|.|.-|-.+|+.+... |+ +++.+
T Consensus 4 Ta~V~lAgllnAlk~------------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~v 65 (279)
T cd05312 4 TAAVALAGLLAALRI------------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLV 65 (279)
T ss_pred HHHHHHHHHHHHHHH------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEE
Confidence 455667777777762 35568889999999999999999998866 76 78888
Q ss_pred CCCC-------c--H---HHHHHcC-CcccCHHHhcc--ccCEEEEeCCCChhccccccHHHHhcCC---CceEEEeccC
Q 046427 222 DPYA-------Q--A---DRARATG-VGLVSFEEAIS--TADFISLHMPLTPATSKMFNDEAFFKMK---KGVRIVNVAR 283 (595)
Q Consensus 222 d~~~-------~--~---~~a~~~g-~~~~~l~ell~--~aD~V~l~~Plt~~t~~li~~~~l~~mk---~gailiN~ar 283 (595)
|++- . . ..++... -...+|.|+++ ++|+++=+- ..-+++.++.++.|. +..+|.=.|.
T Consensus 66 D~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSN 141 (279)
T cd05312 66 DSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFALSN 141 (279)
T ss_pred cCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence 8652 1 1 1122211 02348999999 889997643 124789999999998 8899998886
Q ss_pred Cch---hcHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcH-----HHHHHHHHHHHHHHHHHH
Q 046427 284 GGV---VDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTT-----EAQEGVAIEIAEAVIGAL 355 (595)
Q Consensus 284 g~~---vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~-----ea~~~~~~~~~~~l~~~l 355 (595)
-.. +..++.+++-+...|.+.|+-.-..+.-.....-=+.-|+++-|-++-... .--..|-..+++.|.++.
T Consensus 142 Pt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~ 221 (279)
T cd05312 142 PTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLV 221 (279)
T ss_pred cCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhC
Confidence 543 134444555444447666642211111001111123468888887763221 111445555666666655
Q ss_pred cCC
Q 046427 356 KGE 358 (595)
Q Consensus 356 ~g~ 358 (595)
...
T Consensus 222 ~~~ 224 (279)
T cd05312 222 TDE 224 (279)
T ss_pred Ccc
Confidence 433
No 331
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.18 E-value=0.047 Score=54.33 Aligned_cols=90 Identities=20% Similarity=0.192 Sum_probs=65.3
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH---HHHcCCcc----cCHHHhccccCEEEEeCCCChh
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR---ARATGVGL----VSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~---a~~~g~~~----~~l~ell~~aD~V~l~~Plt~~ 259 (595)
..+|.||++.|||-|.+|..=|+.+...|.+|+++.+....+. ..+.++.. .+.++ +..+++|+.+++..+
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~- 84 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEE- 84 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHH-
Confidence 3579999999999999999999999999999999998773322 12222222 13334 344999999987544
Q ss_pred ccccccHHHHhcCCCceEEEecc
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~a 282 (595)
+|+..+..+++-.+++|+.
T Consensus 85 ----ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 85 ----LNERIAKAARERRILVNVV 103 (210)
T ss_pred ----HHHHHHHHHHHhCCceecc
Confidence 4566666667767888874
No 332
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.17 E-value=0.067 Score=42.78 Aligned_cols=59 Identities=15% Similarity=0.304 Sum_probs=42.6
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEc----CCCCcHHHHHHHhc
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGV----DEEPSREVLKKIGE 583 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~----d~~~~~e~l~~L~~ 583 (595)
.+.+...|+||+++.|+..|.++++||..+++.... +..+..+.+ .++.+.+.+++|++
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~--~~~~~~f~i~~~~~~~~~~~~~~~i~~ 64 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLG--ERAEDVFYVTDADGQPLDPERQEALRA 64 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecC--CEEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 356788999999999999999999999999986443 345554443 22345566666653
No 333
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.17 E-value=0.13 Score=56.61 Aligned_cols=110 Identities=22% Similarity=0.311 Sum_probs=70.2
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH------HHHHHcCCccc---CHHHhccccCEEEEeCCCChh
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA------DRARATGVGLV---SFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~ 259 (595)
.+.+|++.|+|.|.+|.++|+.|...|++|.++|+.... +...+.|+... ..++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 367999999999999999999999999999999986422 11223355432 234667789999987654443
Q ss_pred ccccc----------cH-HHHhc-CCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 260 TSKMF----------ND-EAFFK-MKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 260 t~~li----------~~-~~l~~-mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
...+. .. +.+.. .+.-.+-|--+.|+.-..+-|...|+.
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 32221 11 11221 232234444457888666666677754
No 334
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=95.16 E-value=0.028 Score=58.44 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=42.1
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE 572 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~ 572 (595)
.|.+..+|+||+|++|++.|+++|+||.+++-.....++.=.|++++|-+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~ 51 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE 51 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC
Confidence 46677899999999999999999999999998876666677777777743
No 335
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=95.14 E-value=0.072 Score=42.27 Aligned_cols=59 Identities=17% Similarity=0.338 Sum_probs=43.2
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC----CcHHHHHHHhc
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE----PSREVLKKIGE 583 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~----~~~e~l~~L~~ 583 (595)
.|.+...|+||.++.++..|.++++||..+....... ....++.++.+ .+++..++|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~l~~ 64 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE--RALDVFYVTDSDGRPLDPERIARLEE 64 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC--EEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 4567789999999999999999999999999865432 55556665432 34456665543
No 336
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.14 E-value=0.049 Score=62.63 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=64.4
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-----C---HHHh-ccccCEEEEeCCCChhcc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-----S---FEEA-ISTADFISLHMPLTPATS 261 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----~---l~el-l~~aD~V~l~~Plt~~t~ 261 (595)
...+.|+|+|++|+.+++.++..|.++++.|.++. .+.+++.|.... + |+++ +++||.++++++..+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 35699999999999999999999999999998773 455566675421 2 3222 679999999999766554
Q ss_pred ccccHHHHhcCCCceEEEeccC
Q 046427 262 KMFNDEAFFKMKKGVRIVNVAR 283 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~ar 283 (595)
.++. ..+.+.|...++--+|
T Consensus 480 ~i~~--~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIVE--LCQQHFPHLHILARAR 499 (601)
T ss_pred HHHH--HHHHHCCCCeEEEEeC
Confidence 4432 3444566666665555
No 337
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.13 E-value=0.065 Score=57.60 Aligned_cols=87 Identities=31% Similarity=0.368 Sum_probs=60.7
Q ss_pred ecCCEEEEEeCCh----------HHHHHHHHHhcCCCEEEEECCCCcHHHHHHc-CCccc-CHHHhccccCEEEEeCCCC
Q 046427 190 LVGKTLAVMGFGK----------VGTEVARRAKGLGMNVIAHDPYAQADRARAT-GVGLV-SFEEAISTADFISLHMPLT 257 (595)
Q Consensus 190 l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~-g~~~~-~l~ell~~aD~V~l~~Plt 257 (595)
|.||||||+||-- -...++++|+..|.+|.+|||.......... ++.+. ++++++++||++++++- .
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H
Confidence 8999999999853 4567899999999999999997643322222 24444 79999999999999875 3
Q ss_pred hhccccccHHHHhcCCCceEEEe
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVN 280 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN 280 (595)
++-+.+= -+.+ .||. ..+++
T Consensus 387 ~ef~~~d-~~~~-~m~~-~~v~D 406 (414)
T COG1004 387 DEFRDLD-FEKL-LMKT-PVVID 406 (414)
T ss_pred HHHhccC-hhhh-hccC-CEEEe
Confidence 4444432 2223 5654 44444
No 338
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.13 E-value=0.042 Score=57.15 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=49.1
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHcC----Cccc----CHHHhccccCEEEEeCCCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARATG----VGLV----SFEEAISTADFISLHMPLT 257 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g----~~~~----~l~ell~~aD~V~l~~Plt 257 (595)
.+.|+++.|||.|-+|++++..|...|+ +|..++|.... ..+...+ +... ++.+.+.++|+|+.|+|..
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 3678999999999999999999999997 69999987532 1222221 1111 2335567889998888863
No 339
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.11 E-value=0.039 Score=62.84 Aligned_cols=85 Identities=15% Similarity=0.361 Sum_probs=58.6
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-----C---HHH-hccccCEEEEeCCCChhccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-----S---FEE-AISTADFISLHMPLTPATSK 262 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----~---l~e-ll~~aD~V~l~~Plt~~t~~ 262 (595)
..+-|+|+|++|+.+|+.++..|.+|++.|.+.. .+.+++.|+..+ + +++ -+++||.++++++..+++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 4588999999999999999999999999998763 355566665422 2 222 25689999999987665544
Q ss_pred cccHHHHhcCCCceEEE
Q 046427 263 MFNDEAFFKMKKGVRIV 279 (595)
Q Consensus 263 li~~~~l~~mk~gaili 279 (595)
++-. ...+.+...++
T Consensus 498 iv~~--~~~~~~~~~ii 512 (558)
T PRK10669 498 IVAS--AREKRPDIEII 512 (558)
T ss_pred HHHH--HHHHCCCCeEE
Confidence 4432 12234454444
No 340
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.09 E-value=0.2 Score=52.88 Aligned_cols=63 Identities=11% Similarity=0.220 Sum_probs=47.9
Q ss_pred ecCCEEEEEeC---ChHHHHHHHHHhcCCC-EEEEECCCCc-HHHHHHcCCcc-cCHHHhccccCEEEE
Q 046427 190 LVGKTLAVMGF---GKVGTEVARRAKGLGM-NVIAHDPYAQ-ADRARATGVGL-VSFEEAISTADFISL 252 (595)
Q Consensus 190 l~gktvGIIGl---G~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~~~g~~~-~~l~ell~~aD~V~l 252 (595)
+.|.+|++||= +++..+++..+..+|+ +|....|..- +.......+.. .++++.+++||+|..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 67899999998 5999999999999999 9998877531 11111112333 479999999999987
No 341
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=95.08 E-value=0.43 Score=51.31 Aligned_cols=64 Identities=25% Similarity=0.274 Sum_probs=47.4
Q ss_pred ecCCEEEEEeCC--------hHHHHHHHHHhcCCCEEEEECCCC---cHH---H----HHHcCCc---ccCHHHhccccC
Q 046427 190 LVGKTLAVMGFG--------KVGTEVARRAKGLGMNVIAHDPYA---QAD---R----ARATGVG---LVSFEEAISTAD 248 (595)
Q Consensus 190 l~gktvGIIGlG--------~IG~~vA~~l~~~G~~V~~~d~~~---~~~---~----a~~~g~~---~~~l~ell~~aD 248 (595)
|+|++|+|+|.| ++.++++..+..||++|....|.. ..+ . +++.|.. ..++++.++++|
T Consensus 168 l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~aD 247 (357)
T TIGR03316 168 LKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDAD 247 (357)
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCC
Confidence 789999999853 455778888999999999988752 221 1 2244543 248999999999
Q ss_pred EEEEe
Q 046427 249 FISLH 253 (595)
Q Consensus 249 ~V~l~ 253 (595)
+|..-
T Consensus 248 vvyt~ 252 (357)
T TIGR03316 248 IVYPK 252 (357)
T ss_pred EEEEC
Confidence 99885
No 342
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.06 E-value=0.04 Score=57.51 Aligned_cols=49 Identities=12% Similarity=0.189 Sum_probs=40.5
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcC
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVD 570 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d 570 (595)
+.|.+..+|+||+|++|++.|+++|+||.+++-......+.-.|.++++
T Consensus 10 ~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~ 58 (289)
T PRK13010 10 YVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH 58 (289)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE
Confidence 4677788999999999999999999999999886445556667776666
No 343
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.06 E-value=0.042 Score=57.84 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=46.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcHH--HHHHcC-Cc---------ccCHHHhccccCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQAD--RARATG-VG---------LVSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~--~a~~~g-~~---------~~~l~ell~~aD~V~l~~Plt 257 (595)
++|+|||.|.+|..+|..+...| .+|..||++.... .+.++. .. ..+. +.+++||+|+++++..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 36999999999999999998888 5899999875321 111111 10 0134 5689999999999853
No 344
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.05 E-value=0.11 Score=57.71 Aligned_cols=109 Identities=26% Similarity=0.351 Sum_probs=68.9
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCcccCH-HHhccccCEEEEeC--CCC-h----h-
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLVSF-EEAISTADFISLHM--PLT-P----A- 259 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~~l-~ell~~aD~V~l~~--Plt-~----~- 259 (595)
+.|++|.|+|+|..|.++|+.|+..|++|.++|.... .....+.|++.... .+-+.++|+|+..- |.+ + .
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~v 86 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWVV 86 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHHH
Confidence 6789999999999999999999999999999997642 22233456654321 23356899887632 211 1 1
Q ss_pred --ccc----cccHHH-Hhc-C-----CCceEEEeccCCchhcHHHHHHHHhc
Q 046427 260 --TSK----MFNDEA-FFK-M-----KKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 260 --t~~----li~~~~-l~~-m-----k~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
++. ++.+.. +.. + +...+-|.-+.|+.-..+-+...|+.
T Consensus 87 ~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~ 138 (460)
T PRK01390 87 DLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE 138 (460)
T ss_pred HHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 111 133222 222 2 33455666668998777766777764
No 345
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=95.05 E-value=0.23 Score=52.89 Aligned_cols=94 Identities=17% Similarity=0.159 Sum_probs=63.5
Q ss_pred eecCCEEEEEeCC--hHHHHHHHHHhcCCCEEEEECCCC---cHH-------HHHHcCCc---ccCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGFG--KVGTEVARRAKGLGMNVIAHDPYA---QAD-------RARATGVG---LVSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~---~~~-------~a~~~g~~---~~~l~ell~~aD~V~l~ 253 (595)
.+.|++|++||-+ ++.++.+..+..+|++|....|.. +.. .+...|.. ..++++.+++||+|..-
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence 3778999999975 889999999999999999987742 111 12234532 24899999999999884
Q ss_pred CCC--Ch------h-----ccccccHHHHhcCC-CceEEEecc
Q 046427 254 MPL--TP------A-----TSKMFNDEAFFKMK-KGVRIVNVA 282 (595)
Q Consensus 254 ~Pl--t~------~-----t~~li~~~~l~~mk-~gailiN~a 282 (595)
.=. .. + -...++++.++.+| ++++|.-|.
T Consensus 232 ~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 232 VWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred CcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence 210 00 0 12335666666665 477777665
No 346
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.02 E-value=0.086 Score=43.32 Aligned_cols=58 Identities=22% Similarity=0.202 Sum_probs=43.9
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC-----CC-cHHHHHHHhc
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE-----EP-SREVLKKIGE 583 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~-----~~-~~e~l~~L~~ 583 (595)
+-+..+|+||.++.|+..|.++++||..-++... ++..+.++.+.. +. +++-+++|++
T Consensus 3 ~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~ 66 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVRDEETGAPIDDPIRLASIED 66 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEEcCcCCCCCCCHHHHHHHHH
Confidence 4466789999999999999999999999999854 677777776532 22 4455566543
No 347
>PLN02342 ornithine carbamoyltransferase
Probab=95.02 E-value=0.4 Score=51.34 Aligned_cols=129 Identities=17% Similarity=0.160 Sum_probs=79.0
Q ss_pred hhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeC-ChHHHHHHHHH
Q 046427 133 SAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF-GKVGTEVARRA 211 (595)
Q Consensus 133 ~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l 211 (595)
+.+...+|+|.|.-+....++ .+++=++.+.++ .| .+.|++|++||= .++-++++..+
T Consensus 156 ~la~~~~vPVINA~~~~~HPt--QaLaDl~Ti~e~------------------~G-~l~glkva~vGD~~nva~Sli~~~ 214 (348)
T PLN02342 156 DLAEYSSVPVINGLTDYNHPC--QIMADALTIIEH------------------IG-RLEGTKVVYVGDGNNIVHSWLLLA 214 (348)
T ss_pred HHHHhCCCCEEECCCCCCChH--HHHHHHHHHHHH------------------hC-CcCCCEEEEECCCchhHHHHHHHH
Confidence 344556899999855432222 222222333221 12 378999999997 46888888888
Q ss_pred hcCCCEEEEECCCC---cHH---HHHHcC---Ccc-cCHHHhccccCEEEEeC----CCChh--------ccccccHHHH
Q 046427 212 KGLGMNVIAHDPYA---QAD---RARATG---VGL-VSFEEAISTADFISLHM----PLTPA--------TSKMFNDEAF 269 (595)
Q Consensus 212 ~~~G~~V~~~d~~~---~~~---~a~~~g---~~~-~~l~ell~~aD~V~l~~----Plt~~--------t~~li~~~~l 269 (595)
..||++|....|.. ..+ .+.+.| +.. .++++.+++||+|..-. -..++ ....++++.+
T Consensus 215 ~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell 294 (348)
T PLN02342 215 AVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALM 294 (348)
T ss_pred HHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHHH
Confidence 89999999887743 111 123334 232 47999999999999853 11010 1244566666
Q ss_pred hcCCCceEEEecc
Q 046427 270 FKMKKGVRIVNVA 282 (595)
Q Consensus 270 ~~mk~gailiN~a 282 (595)
+.+|++++|.-|.
T Consensus 295 ~~ak~~aivMHpL 307 (348)
T PLN02342 295 KLAGPQAYFMHCL 307 (348)
T ss_pred hccCCCcEEeCCC
Confidence 6667776666664
No 348
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.95 E-value=0.055 Score=57.23 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=45.5
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcHHHHHHc----------CCcc-cCHHHhccccCEEEEeCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQADRARAT----------GVGL-VSFEEAISTADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~----------g~~~-~~l~ell~~aD~V~l~~P 255 (595)
.+++|+|||.|.+|..+|..+...|. ++..||.+........+ .+.. .+-.+.+++||+|+++.-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 46799999999999999999987776 89999986532211111 1111 122355899999999764
No 349
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.93 E-value=0.082 Score=56.53 Aligned_cols=108 Identities=22% Similarity=0.276 Sum_probs=64.5
Q ss_pred EEEEEeCChHHHHHHHHHhcC----------CCEEEE-ECCCC--------cHHH----HHHcCC-c-------ccCHHH
Q 046427 194 TLAVMGFGKVGTEVARRAKGL----------GMNVIA-HDPYA--------QADR----ARATGV-G-------LVSFEE 242 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~----------G~~V~~-~d~~~--------~~~~----a~~~g~-~-------~~~l~e 242 (595)
+|||+|+|.||+.+++.+... +++|.+ +|+.. ..+. ....+. . ..++++
T Consensus 4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~e 83 (341)
T PRK06270 4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGLE 83 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHHH
Confidence 799999999999999998744 567665 45321 1211 111221 0 127888
Q ss_pred hcc--ccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchh-cHHHHHHHHhcCCe
Q 046427 243 AIS--TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV-DEEALVRALDSGII 301 (595)
Q Consensus 243 ll~--~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~v-d~~aL~~aL~~g~i 301 (595)
++. +.|+|+.|+|....+.+.--.-....|+.|.-+|-...+.+. ..++|.++.++...
T Consensus 84 ll~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 84 VIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred HhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 884 689999999964433222112223446677777665444443 35677776665543
No 350
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.90 E-value=0.13 Score=53.97 Aligned_cols=87 Identities=29% Similarity=0.275 Sum_probs=64.3
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeCCCChhccc-------
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSK------- 262 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~------- 262 (595)
.|++++|||=-.--..++++|.+.|++|..+.-. . +.....|++.. +.++++++||+|++-+|.+.+...
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~-~-~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFD-Q-LDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecc-c-cccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence 4789999999999999999999999998875321 1 11123477665 578899999999999887543211
Q ss_pred ---cccHHHHhcCCCceEEE
Q 046427 263 ---MFNDEAFFKMKKGVRIV 279 (595)
Q Consensus 263 ---li~~~~l~~mk~gaili 279 (595)
-++.+.++.|++++.++
T Consensus 79 ~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 79 EKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred cCCcchHHHHHhcCCCCEEE
Confidence 13567899999998444
No 351
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=94.89 E-value=1.3 Score=52.12 Aligned_cols=178 Identities=20% Similarity=0.150 Sum_probs=115.4
Q ss_pred hCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCC
Q 046427 137 EHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM 216 (595)
Q Consensus 137 ~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~ 216 (595)
+..|.|.|+- -..+|=-+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 151 ~~~ip~f~DD---~~GTa~v~lA~l~na~~------------------~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~ 209 (752)
T PRK07232 151 RMDIPVFHDD---QHGTAIISAAALLNALE------------------LVGKKIEDVKIVVSGAGAAAIACLNLLVALGA 209 (752)
T ss_pred hcCCCeeccc---cchHHHHHHHHHHHHHH------------------HhCCChhhcEEEEECccHHHHHHHHHHHHcCC
Confidence 3479999983 33456667777887777 23456888899999999999999999998888
Q ss_pred ---EEEEECCCC--c------HHHHHH---cCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 217 ---NVIAHDPYA--Q------ADRARA---TGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 217 ---~V~~~d~~~--~------~~~a~~---~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
+++.+|.+- . ....+. ..-...+|.|+++.+|+++=. . +-+.+.++.++.|.+..+|.=.|
T Consensus 210 ~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifals 284 (752)
T PRK07232 210 KKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFALA 284 (752)
T ss_pred CcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEecC
Confidence 788888642 0 011111 111234899999999988653 2 25899999999999999999998
Q ss_pred CCchh-cHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCC---------CcHHHHHHHHHHHHHHH
Q 046427 283 RGGVV-DEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGA---------STTEAQEGVAIEIAEAV 351 (595)
Q Consensus 283 rg~~v-d~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~---------~t~ea~~~~~~~~~~~l 351 (595)
.-... ..++.+++ ..|.|.+.|- ...|- +.-|+++-|-++- -|++.....+..+++.+
T Consensus 285 NP~~E~~p~~a~~~-~~~~i~atGr---s~~pn-------Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 352 (752)
T PRK07232 285 NPDPEITPEEAKAV-RPDAIIATGR---SDYPN-------QVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELA 352 (752)
T ss_pred CCCccCCHHHHHHh-cCCEEEEECC---cCCCC-------cccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhc
Confidence 65542 23333333 2245655551 11121 2346777776542 34555555544444433
No 352
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.89 E-value=0.048 Score=60.04 Aligned_cols=122 Identities=21% Similarity=0.363 Sum_probs=75.0
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-----HHHHHcCCccc---CHHHhccccCEEEEeCCCChhcc
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-----DRARATGVGLV---SFEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-----~~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~ 261 (595)
..+|+|.|+|+|.-|.++|+.|+..|.+|+++|..... ......+++.. ...+.+.++|+|++.=- -+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPG-i~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPG-IPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCC-CCCCC
Confidence 44999999999999999999999999999999966532 11123454432 12267889999988532 22222
Q ss_pred ccc-----------cHH-HHhcC-CCc-eEEEeccCCchhcHHHHHHHHh--------cCCeeEEEEecCCCC
Q 046427 262 KMF-----------NDE-AFFKM-KKG-VRIVNVARGGVVDEEALVRALD--------SGIISQAALDVFTEE 312 (595)
Q Consensus 262 ~li-----------~~~-~l~~m-k~g-ailiN~arg~~vd~~aL~~aL~--------~g~i~ga~lDv~~~E 312 (595)
-++ .+- .+... ++. .+-|--+-|+.-.+.-+...|+ .|.|...++|+..++
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~ 156 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA 156 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence 222 222 22222 122 3444444677655554555544 345656788888764
No 353
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.87 E-value=0.22 Score=54.82 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=69.2
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-----HHHHHcCCccc---CHHHhccc-cCEEEEeCCCChh
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-----DRARATGVGLV---SFEEAIST-ADFISLHMPLTPA 259 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-----~~a~~~g~~~~---~l~ell~~-aD~V~l~~Plt~~ 259 (595)
++.||++.|+|.|.+|.++|+.|++.|++|.++|..... ....+.|+... ...+++.. +|+|+...-..+.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 367899999999999999999999999999999975411 22334465432 23344554 8988875522111
Q ss_pred c----------cccccHHHH-hcC-CCceEEEeccCCchhcHHHHHHHHhc
Q 046427 260 T----------SKMFNDEAF-FKM-KKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 260 t----------~~li~~~~l-~~m-k~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
. ..++.+.++ ..+ +...+-|--+.|+.-...-+...|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 1 122333333 223 33345555558888666666666754
No 354
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.86 E-value=0.071 Score=38.82 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=41.9
Q ss_pred EEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC-CcHHHHHHH
Q 046427 525 LCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE-PSREVLKKI 581 (595)
Q Consensus 525 iv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~-~~~e~l~~L 581 (595)
.+...|+||.+.++.+.|.++++||..+...........-+.+.++.. ..+.++++|
T Consensus 2 ~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 59 (60)
T cd02116 2 TVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEAL 59 (60)
T ss_pred EEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechHHHHHHHHHh
Confidence 356678999999999999999999999998765434455556666665 334555544
No 355
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.84 E-value=0.058 Score=60.56 Aligned_cols=64 Identities=23% Similarity=0.359 Sum_probs=47.8
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH---HHHHHc--CCccc--C-HHHhccccCEEEEe
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA---DRARAT--GVGLV--S-FEEAISTADFISLH 253 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~--g~~~~--~-l~ell~~aD~V~l~ 253 (595)
+.+++|.|+|+|..|.++|+.|+..|.+|.++|..... ....+. |++.. + ..+.+..+|+|+..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 56889999999999999999999999999999975421 222333 44322 1 24556789999986
No 356
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.83 E-value=0.12 Score=54.26 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=72.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHH-cCCcc------------cCHHHhccccCEEEEeCCCCh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARA-TGVGL------------VSFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~-~g~~~------------~~l~ell~~aD~V~l~~Plt~ 258 (595)
++|+|+|.|.||+-+|-.|...|.+|..+++.. ..+...+ .|+.. ..-.+....+|+|++|+-..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 479999999999999999999999999998864 3332222 23311 01122346789999998633
Q ss_pred hccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeEEEE
Q 046427 259 ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAAL 306 (595)
Q Consensus 259 ~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~ga~l 306 (595)
++...+ +.....+.+++.++-+-- ++-.++.+.+.+...++.++..
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQN-Gv~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQN-GLGSQDAVAARVPHARCIFASS 127 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeC-CCCCHHHHHHhCCCCcEEEEEe
Confidence 244333 233445677777666533 4446677788887777765443
No 357
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.82 E-value=0.16 Score=51.84 Aligned_cols=85 Identities=18% Similarity=0.179 Sum_probs=58.2
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKM 272 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~m 272 (595)
-++-|+|-|.+++.+|+.++.+|++|.++|++.... . ...+..++.+....| .+.+..+
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~--~---------~~~~~~~~~~~~~~~----------~~~~~~~ 159 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEF--P---------EDLPDGVATLVTDEP----------EAEVAEA 159 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccc--c---------ccCCCCceEEecCCH----------HHHHhcC
Confidence 379999999999999999999999999999864211 0 011123443322222 1222335
Q ss_pred CCceEEEeccCCchhcHHHHHHHHhc
Q 046427 273 KKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 273 k~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.+...+|=+.++.-.|.+.|..+|+.
T Consensus 160 ~~~t~vvi~th~h~~D~~~L~~aL~~ 185 (246)
T TIGR02964 160 PPGSYFLVLTHDHALDLELCHAALRR 185 (246)
T ss_pred CCCcEEEEEeCChHHHHHHHHHHHhC
Confidence 56777777888888899999999843
No 358
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=94.81 E-value=0.053 Score=56.75 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=42.0
Q ss_pred EEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcHHHHHHc---------CC----cc-cCHHHhccccCEEEEeCC
Q 046427 195 LAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQADRARAT---------GV----GL-VSFEEAISTADFISLHMP 255 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g~----~~-~~l~ell~~aD~V~l~~P 255 (595)
|+|||.|.+|..+|..+...|. +|+.+|.+.....+... +. .. .+. +.+++||+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999999886554 99999987532211111 11 11 244 45899999999874
No 359
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.79 E-value=0.065 Score=59.49 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=70.5
Q ss_pred ecCCEEEEEeCChHHHH-HHHHHhcCCCEEEEECCCCcH--HHHHHcCCccc--CHHHhccccCEEEEeCCCChh---c-
Q 046427 190 LVGKTLAVMGFGKVGTE-VARRAKGLGMNVIAHDPYAQA--DRARATGVGLV--SFEEAISTADFISLHMPLTPA---T- 260 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~--~l~ell~~aD~V~l~~Plt~~---t- 260 (595)
..+|++.|+|+|..|.+ +|+.|+..|++|.++|..... +...+.|+... .-.+.+.++|+|++.--..+. .
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 46789999999999999 799999999999999976532 22344566542 123456789998875422221 1
Q ss_pred ------cccccHHHH-hc-CCC-ceEEEeccCCchhcHHHHHHHHhcC
Q 046427 261 ------SKMFNDEAF-FK-MKK-GVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 261 ------~~li~~~~l-~~-mk~-gailiN~arg~~vd~~aL~~aL~~g 299 (595)
..+++..++ .. +++ -.+-|--+-|+.-...-+.+.|+..
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~ 132 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEA 132 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence 123444333 22 332 3455555578886666666667644
No 360
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.78 E-value=0.11 Score=54.52 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=58.1
Q ss_pred CEEEEEeCChHHHHHHHHHhc-CCCEEEE-ECCCCc---HHHHHHcCCcc--cCHHHhcc-----ccCEEEEeCCCChhc
Q 046427 193 KTLAVMGFGKVGTEVARRAKG-LGMNVIA-HDPYAQ---ADRARATGVGL--VSFEEAIS-----TADFISLHMPLTPAT 260 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~-~G~~V~~-~d~~~~---~~~a~~~g~~~--~~l~ell~-----~aD~V~l~~Plt~~t 260 (595)
.++||||.|+||...+..+.. -++++.+ +|++.. ...+++.|+.. .+++++++ +.|+|+.++|... .
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~-H 83 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGA-H 83 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHH-H
Confidence 579999999999997777664 4577664 565542 24567788764 37888884 5899999998421 1
Q ss_pred cccccHHHHhcCCCceEEEecc
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~a 282 (595)
. +-.....+.|+.+|+-+
T Consensus 84 ~----e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 84 V----RHAAKLREAGIRAIDLT 101 (302)
T ss_pred H----HHHHHHHHcCCeEEECC
Confidence 1 11222357788888876
No 361
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.76 E-value=0.066 Score=59.76 Aligned_cols=110 Identities=16% Similarity=0.200 Sum_probs=69.3
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHH--HHHHcCCccc---CHHHhccccCEEEEeC--CC-Chhc
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD--RARATGVGLV---SFEEAISTADFISLHM--PL-TPAT 260 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~g~~~~---~l~ell~~aD~V~l~~--Pl-t~~t 260 (595)
++.+|++.|+|+|..|+++|+.|...|.+|.++|+..... ...+.|+... ...+.+.++|+|+..- |. .++.
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 5788999999999999999999999999999999764321 1234576543 1234567899988753 22 2211
Q ss_pred -------cccccHHHHhc-------C-CC-ceEEEeccCCchhcHHHHHHHHhc
Q 046427 261 -------SKMFNDEAFFK-------M-KK-GVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 261 -------~~li~~~~l~~-------m-k~-gailiN~arg~~vd~~aL~~aL~~ 298 (595)
..++.+-.+.. + ++ ..+-|--+-|+.-...-+.+.|+.
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~ 145 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQE 145 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 12223323321 1 12 244444447887666666666764
No 362
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.69 E-value=0.067 Score=57.22 Aligned_cols=92 Identities=14% Similarity=0.266 Sum_probs=56.8
Q ss_pred CEEEEEeC-ChHHHHHHHHHhcC-CCEEEE-ECCCCcHH-HHHHcC-C------cccCHHH-hccccCEEEEeCCCChhc
Q 046427 193 KTLAVMGF-GKVGTEVARRAKGL-GMNVIA-HDPYAQAD-RARATG-V------GLVSFEE-AISTADFISLHMPLTPAT 260 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~~~~-~a~~~g-~------~~~~l~e-ll~~aD~V~l~~Plt~~t 260 (595)
++|+|+|. |.+|+.+++.+... ++++.+ +++....+ .....+ + .+.++++ .+.++|+|++|+|. ...
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~-~~~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPH-GVS 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCc-HHH
Confidence 58999997 99999999999876 677655 55332111 111111 1 1223332 45789999999995 333
Q ss_pred cccccHHHHhcCCCceEEEeccCCchhcH
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVARGGVVDE 289 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~arg~~vd~ 289 (595)
..++. ..++.|+.+||.+-.=-.+.
T Consensus 82 ~~~v~----~a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 82 MDLAP----QLLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred HHHHH----HHHhCCCEEEECCcccCCCC
Confidence 33322 22467899999985444443
No 363
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.68 E-value=0.12 Score=58.53 Aligned_cols=39 Identities=33% Similarity=0.476 Sum_probs=35.1
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
+..+.+|++.|+|.|-+|++++..|...|++|+.++++.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~ 412 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY 412 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 345789999999999999999999999999999999864
No 364
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.68 E-value=0.12 Score=54.14 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=56.1
Q ss_pred EEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcHHHHHHcCC----------cc--cCHHHhccccCEEEEeCCCChhc
Q 046427 195 LAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQADRARATGV----------GL--VSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~g~----------~~--~~l~ell~~aD~V~l~~Plt~~t 260 (595)
|+|||.|.+|..+|..+...| .++..+|.+........... .. .+-.+.+++||+|+++... +..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~-p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGA-PRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCC-CCC
Confidence 589999999999999998777 58999998764322211110 11 1114689999999999874 222
Q ss_pred ccc------------cc--HHHHhcCCCceEEEecc
Q 046427 261 SKM------------FN--DEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 261 ~~l------------i~--~~~l~~mk~gailiN~a 282 (595)
.++ +. ...+....|.+++++++
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 221 10 11233445788899887
No 365
>PRK11579 putative oxidoreductase; Provisional
Probab=94.67 E-value=0.079 Score=56.52 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=43.7
Q ss_pred EEEEEeCChHHHH-HHHHHhc-CCCEEEE-ECCCCcHHHHHHc-CCc-ccCHHHhcc--ccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTE-VARRAKG-LGMNVIA-HDPYAQADRARAT-GVG-LVSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~-vA~~l~~-~G~~V~~-~d~~~~~~~a~~~-g~~-~~~l~ell~--~aD~V~l~~Pl 256 (595)
++||||+|.||+. .+..++. -++++.+ +|++.... .... +.. +.+++++++ +.|+|++|+|.
T Consensus 6 rvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~ 74 (346)
T PRK11579 6 RVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKV-KADWPTVTVVSEPQHLFNDPNIDLIVIPTPN 74 (346)
T ss_pred eEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHH-HhhCCCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence 7999999999984 5666654 4688775 67764322 2222 332 358999996 57999999994
No 366
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=94.66 E-value=0.56 Score=49.51 Aligned_cols=65 Identities=25% Similarity=0.424 Sum_probs=50.1
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCc-HH-------HHHHcC-Cc-ccCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQ-AD-------RARATG-VG-LVSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~-~~-------~a~~~g-~~-~~~l~ell~~aD~V~l~ 253 (595)
.+.|++|++||- +++..+++..+..+|++|....|... .+ .+++.| +. ..++++.+++||+|..-
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d 225 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD 225 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence 478999999998 79999999999999999999887541 11 122233 23 24899999999999883
No 367
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.64 E-value=0.085 Score=43.16 Aligned_cols=60 Identities=12% Similarity=0.274 Sum_probs=43.3
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecC--CCcEEEEEEcCCCCc----HHHHHHHhcC
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAP--QKQAVMTIGVDEEPS----REVLKKIGET 584 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~--g~~al~vi~~d~~~~----~e~l~~L~~~ 584 (595)
+++.-+|+||.++.|.+.++++++||..++ +|... .++....++++.... +++++.|++.
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~-Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIE-SRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRV 67 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEE-eeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 455667899999999999999999999995 45333 344566677776422 2567777663
No 368
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=94.55 E-value=0.069 Score=57.68 Aligned_cols=61 Identities=28% Similarity=0.386 Sum_probs=45.0
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHH--HHcCC--ccc---CHHHhccccCEEEE
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA--RATGV--GLV---SFEEAISTADFISL 252 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~g~--~~~---~l~ell~~aD~V~l 252 (595)
.++|||||-|..|+.++..++.+|++|+++|++...... ...-+ .+. .+.++++.||+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 378999999999999999999999999999987532111 11101 122 36778899999864
No 369
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=94.53 E-value=0.62 Score=49.66 Aligned_cols=94 Identities=20% Similarity=0.248 Sum_probs=63.7
Q ss_pred eecCCEEEEEeCC--hHHHHHHHHHhcCCCEEEEECCCC--c-HH-------HHHHcCCc--c-cCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGFG--KVGTEVARRAKGLGMNVIAHDPYA--Q-AD-------RARATGVG--L-VSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~--~-~~-------~a~~~g~~--~-~~l~ell~~aD~V~l~ 253 (595)
.+.|++|++||=+ ++.++++..+..+|++|....|.. . .+ .+...|.. . .++++.++++|+|..-
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 232 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD 232 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999976 789999999999999999887643 1 11 12233532 2 4899999999999885
Q ss_pred C------CCC--hh-----ccccccHHHHhcC-CCceEEEecc
Q 046427 254 M------PLT--PA-----TSKMFNDEAFFKM-KKGVRIVNVA 282 (595)
Q Consensus 254 ~------Plt--~~-----t~~li~~~~l~~m-k~gailiN~a 282 (595)
. ... ++ -...++.+.++.. |++++|.-|.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence 3 100 00 1233566666664 6777777775
No 370
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.51 E-value=0.12 Score=53.90 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=33.3
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCE-EEEECCCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMN-VIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~ 225 (595)
.+.||++.|+|.|-+|++++..+...|.+ |..++++.
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46789999999999999999999999985 99999864
No 371
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.50 E-value=0.053 Score=50.44 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=45.0
Q ss_pred CEEEEEeC-ChHHHHHHHHHh--cCCCEEEEECCCCcHHH--HHHc-------CC--c-ccCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGF-GKVGTEVARRAK--GLGMNVIAHDPYAQADR--ARAT-------GV--G-LVSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~--~~G~~V~~~d~~~~~~~--a~~~-------g~--~-~~~l~ell~~aD~V~l~~P 255 (595)
.+|+|||. |.+|+.+|..+. .++-++..||....... +.++ .. . .....+.+++||+|+++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 37999999 999999999987 45568999998742211 1111 01 1 1256788999999999883
No 372
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=94.49 E-value=0.16 Score=52.85 Aligned_cols=84 Identities=17% Similarity=0.263 Sum_probs=56.1
Q ss_pred EEEEEeCChHHHHHHHHHhc-CCCEEEE-ECCCCc---HHHHHHcCCcc--cCHHHhcc--ccCEEEEeCCCChhccccc
Q 046427 194 TLAVMGFGKVGTEVARRAKG-LGMNVIA-HDPYAQ---ADRARATGVGL--VSFEEAIS--TADFISLHMPLTPATSKMF 264 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~-~G~~V~~-~d~~~~---~~~a~~~g~~~--~~l~ell~--~aD~V~l~~Plt~~t~~li 264 (595)
++||||.|+||+..+..+.. -++++.+ +|++.. ...+++.|+.. .+.+++++ +.|+|++++|... -.
T Consensus 3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~-H~--- 78 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKA-HA--- 78 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHH-HH---
Confidence 79999999999988776664 4577665 566552 24567778753 36888885 5788999998432 11
Q ss_pred cHHHHhcCCCceEEEecc
Q 046427 265 NDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 265 ~~~~l~~mk~gailiN~a 282 (595)
+-....++.|..+++-.
T Consensus 79 -e~a~~al~aGk~VIdek 95 (285)
T TIGR03215 79 -RHARLLAELGKIVIDLT 95 (285)
T ss_pred -HHHHHHHHcCCEEEECC
Confidence 11223356677776654
No 373
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=94.45 E-value=1.6 Score=47.52 Aligned_cols=183 Identities=19% Similarity=0.152 Sum_probs=116.1
Q ss_pred hCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCC
Q 046427 137 EHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM 216 (595)
Q Consensus 137 ~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~ 216 (595)
+..|.|.|+- -..+|=.+++-+++.+| ..|..|+..+|.+.|.|.-|-.+++.+++.|+
T Consensus 165 ~~~IPvFhDD---qqGTaiv~lA~llnalk------------------~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~ 223 (432)
T COG0281 165 RMNIPVFHDD---QQGTAIVTLAALLNALK------------------LTGKKLKDQKIVINGAGAAGIAIADLLVAAGV 223 (432)
T ss_pred cCCCCccccc---ccHHHHHHHHHHHHHHH------------------HhCCCccceEEEEeCCcHHHHHHHHHHHHhCC
Confidence 4568887764 23456677888887777 35778999999999999999999999999998
Q ss_pred ---EEEEECCCC--cHH------------HHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEE
Q 046427 217 ---NVIAHDPYA--QAD------------RARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIV 279 (595)
Q Consensus 217 ---~V~~~d~~~--~~~------------~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gaili 279 (595)
+|+.+|+.- ... .+.+..-.+.+ ++.+..+|+++=+- ..+.+.++.++.|.+..++.
T Consensus 224 ~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~~Ma~~PiIf 297 (432)
T COG0281 224 KEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVKEMAKHPIIF 297 (432)
T ss_pred CcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHHHhccCCEEe
Confidence 588888652 100 01000001111 55888999986653 23899999999999999999
Q ss_pred eccCCchh-cHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCCCcHHHH-----HHHHHHHHHHHHH
Q 046427 280 NVARGGVV-DEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQ-----EGVAIEIAEAVIG 353 (595)
Q Consensus 280 N~arg~~v-d~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t~ea~-----~~~~~~~~~~l~~ 353 (595)
=.|--..- ..++..++=....|.+.|. | +.|- +.-|+++-|.++-....++ +.|-..+++.|.+
T Consensus 298 alaNP~pEi~Pe~a~~~~~~aaivaTGr------s---d~Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~ 367 (432)
T COG0281 298 ALANPTPEITPEDAKEWGDGAAIVATGR------S---DYPN-QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIAD 367 (432)
T ss_pred ecCCCCccCCHHHHhhcCCCCEEEEeCC------C---CCcc-cccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHh
Confidence 88854432 2333333322225544432 1 2222 5678999998864222111 3344555666666
Q ss_pred HHc
Q 046427 354 ALK 356 (595)
Q Consensus 354 ~l~ 356 (595)
+.+
T Consensus 368 ~~~ 370 (432)
T COG0281 368 LAR 370 (432)
T ss_pred hcc
Confidence 654
No 374
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.42 E-value=0.096 Score=55.98 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=33.0
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5899999999999999999999999998 88888875
No 375
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.38 E-value=0.18 Score=53.24 Aligned_cols=109 Identities=14% Similarity=0.165 Sum_probs=64.1
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcHHH--HH----Hc---C---Ccc-cCHHHhccccCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQADR--AR----AT---G---VGL-VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~--a~----~~---g---~~~-~~l~ell~~aD~V~l~~Plt 257 (595)
.+|+|||.|.+|..+|..+...| -++..||.+..... +. .. . +.. .+.++ +++||+|+++.-..
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 48999999999999999887555 48999997653211 11 11 0 111 24554 89999999965432
Q ss_pred h---hccc-cc--cH-------HHHhcCCCceEEEeccCCchhcH--HHHHHH--HhcCCeeEE
Q 046427 258 P---ATSK-MF--ND-------EAFFKMKKGVRIVNVARGGVVDE--EALVRA--LDSGIISQA 304 (595)
Q Consensus 258 ~---~t~~-li--~~-------~~l~~mk~gailiN~arg~~vd~--~aL~~a--L~~g~i~ga 304 (595)
. +++. ++ |. +.+....+.+++++++ ..+|. ..+.+. +...++.|.
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t~~~~k~sg~p~~~viG~ 144 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDIMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHHHHHHHHHHhCCCHHHEEec
Confidence 1 2331 11 11 2344457788999987 33342 223333 444455554
No 376
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.35 E-value=0.077 Score=57.59 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=61.6
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcC-CCEEEEECCCCcH-HHHHHcC-------Cc-ccCHH-HhccccCEEEEeCCCCh
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGL-GMNVIAHDPYAQA-DRARATG-------VG-LVSFE-EAISTADFISLHMPLTP 258 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~-G~~V~~~d~~~~~-~~a~~~g-------~~-~~~l~-ell~~aD~V~l~~Plt~ 258 (595)
.-++|+|+|. |.+|+.+.+.|... ++++..+...... ....... .. ..+++ +.++++|+|++|+|. .
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~-~ 115 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH-G 115 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH-H
Confidence 4458999998 99999999999977 6788876543211 1101101 11 11222 225889999999994 3
Q ss_pred hccccccHHHHhcCCCceEEEeccCCchhcHHHHHH
Q 046427 259 ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVR 294 (595)
Q Consensus 259 ~t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~ 294 (595)
....++ ..|+.|+.+||.+..-..+.++.++
T Consensus 116 ~s~~i~-----~~~~~g~~VIDlSs~fRl~~~~~y~ 146 (381)
T PLN02968 116 TTQEII-----KALPKDLKIVDLSADFRLRDIAEYE 146 (381)
T ss_pred HHHHHH-----HHHhCCCEEEEcCchhccCCcccch
Confidence 344443 3356789999998665555444333
No 377
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.35 E-value=0.19 Score=53.31 Aligned_cols=46 Identities=28% Similarity=0.447 Sum_probs=38.0
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVG 236 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~ 236 (595)
.|++|.|+|.|.+|...++.++..|. +|++.|... ..+.++++|+.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 58899999999999999999999998 688888765 44566677753
No 378
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=94.33 E-value=0.045 Score=53.59 Aligned_cols=45 Identities=13% Similarity=0.274 Sum_probs=36.3
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecC--CCcEEEE
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAP--QKQAVMT 566 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~--g~~al~v 566 (595)
+.+.+.-.|+||++..|+..|++++|||.+++...... .+..++.
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~ 142 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLH 142 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEE
Confidence 56667889999999999999999999999999965442 4444444
No 379
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=94.28 E-value=0.98 Score=50.93 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=46.6
Q ss_pred eecCCEEEEEeC---ChHHHHHHHHHhcCC-CEEEEECCCC---cH---HHHHHcCCc---ccCHHHhccccCE
Q 046427 189 SLVGKTLAVMGF---GKVGTEVARRAKGLG-MNVIAHDPYA---QA---DRARATGVG---LVSFEEAISTADF 249 (595)
Q Consensus 189 ~l~gktvGIIGl---G~IG~~vA~~l~~~G-~~V~~~d~~~---~~---~~a~~~g~~---~~~l~ell~~aD~ 249 (595)
.+.|++|++||= +++..+++..+..|| |+|....|.. +. +.+++.|.. ..++++.+++||+
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~ 244 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDV 244 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCc
Confidence 477999999998 689999999999998 9999887643 22 223344542 2489999999995
No 380
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=94.28 E-value=0.066 Score=49.59 Aligned_cols=80 Identities=30% Similarity=0.427 Sum_probs=49.0
Q ss_pred EEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCC
Q 046427 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKK 274 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~ 274 (595)
+-|+|-|.+++++++.++.+|++|.++|++.. .++.++-+ .+.+. ++.. +.+ .+.+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e----------------~~~~~~~~-~~~~~-~~~~-----~~~-~~~~ 56 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE----------------RFPEADEV-ICIPP-DDIL-----EDL-EIDP 56 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC----------------C-TTSSEE-ECSHH-HHHH-----HHC--S-T
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc----------------ccCCCCcc-EecCh-HHHH-----hcc-CCCC
Confidence 46899999999999999999999999998742 11234442 22321 1111 112 3566
Q ss_pred ceEEEeccCCchhcHHHHHHHHhcC
Q 046427 275 GVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 275 gailiN~arg~~vd~~aL~~aL~~g 299 (595)
+..+| +.++.-.|.+.|.++|+..
T Consensus 57 ~t~Vv-~th~h~~D~~~L~~~l~~~ 80 (136)
T PF13478_consen 57 NTAVV-MTHDHELDAEALEAALASP 80 (136)
T ss_dssp T-EEE---S-CCCHHHHHHHHTTSS
T ss_pred CeEEE-EcCCchhHHHHHHHHHcCC
Confidence 66666 7888888999888888774
No 381
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=94.22 E-value=0.035 Score=47.99 Aligned_cols=73 Identities=15% Similarity=0.268 Sum_probs=44.7
Q ss_pred CEEEEEeCChHHHHHHHHHh-cCCCEE-EEECCCCcHHHHHHcCCccc-CHHHhccc--cCEEEEeCCCChhccccccH
Q 046427 193 KTLAVMGFGKVGTEVARRAK-GLGMNV-IAHDPYAQADRARATGVGLV-SFEEAIST--ADFISLHMPLTPATSKMFND 266 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~-~~G~~V-~~~d~~~~~~~a~~~g~~~~-~l~ell~~--aD~V~l~~Plt~~t~~li~~ 266 (595)
.++.|+|+|+.|++++.... ..|+++ .++|.++..--..-.|+... +++++.+. .|+-++++| .+.....+.+
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP-~~~a~~~~~~ 81 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVP-AEAAQEVADE 81 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES--HHHHHHHHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcC-HHHHHHHHHH
Confidence 47999999999999985544 455543 33444332111112255544 77777776 999999999 3444544433
No 382
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.21 E-value=0.09 Score=53.54 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=31.9
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|.+++|+|||+|.+|..+|+.|...|. ++..+|..
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5899999999999999999999998886 67777754
No 383
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=94.16 E-value=0.17 Score=55.78 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=44.1
Q ss_pred EEEEEeCChHHHHHHH---HH---hcCCCEEEEECCCCcH-HHH--------HHcCC----c-ccCHHHhccccCEEEEe
Q 046427 194 TLAVMGFGKVGTEVAR---RA---KGLGMNVIAHDPYAQA-DRA--------RATGV----G-LVSFEEAISTADFISLH 253 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~---~l---~~~G~~V~~~d~~~~~-~~a--------~~~g~----~-~~~l~ell~~aD~V~l~ 253 (595)
+|+|||.|.+|.+.+. .+ ...|.+|..||++... +.. ...+. . ..++.+.++.||+|+.+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a 81 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT 81 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe
Confidence 6999999999998655 22 3346799999987532 111 11121 1 23688999999999999
Q ss_pred CCC
Q 046427 254 MPL 256 (595)
Q Consensus 254 ~Pl 256 (595)
+|.
T Consensus 82 i~~ 84 (423)
T cd05297 82 IQV 84 (423)
T ss_pred eEe
Confidence 994
No 384
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.13 E-value=0.11 Score=57.99 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=70.8
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc------HHHHHHcCCccc--CHHHhccccCEEEEeCCCCh
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ------ADRARATGVGLV--SFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~------~~~a~~~g~~~~--~l~ell~~aD~V~l~~Plt~ 258 (595)
+..+.++++.|||.|.+|.++|+.|+..|++|.++|.... ....++.|++.. .-.+....+|+|+++.-..+
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP 90 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence 3457899999999999999999999999999999986531 122345576543 11124567999998874433
Q ss_pred hccc----------cccHHHH--hcCCC----ceEEEeccCCchhcHHHHHHHHhc
Q 046427 259 ATSK----------MFNDEAF--FKMKK----GVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 259 ~t~~----------li~~~~l--~~mk~----gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.+.. +++..++ ..+.+ ..+-|--+-|+.-...-+...|+.
T Consensus 91 ~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 91 DAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred CCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 2221 2333222 23322 245555557887666666666654
No 385
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.11 E-value=0.31 Score=52.14 Aligned_cols=106 Identities=13% Similarity=0.079 Sum_probs=65.9
Q ss_pred CEEEEEeCChHHHHHHHHHhcC--CCEEEE-ECCCCc--HHHHHHcCCc-ccCHHHhccccCEEEEeCCCC-hhcccccc
Q 046427 193 KTLAVMGFGKVGTEVARRAKGL--GMNVIA-HDPYAQ--ADRARATGVG-LVSFEEAISTADFISLHMPLT-PATSKMFN 265 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~-~d~~~~--~~~a~~~g~~-~~~l~ell~~aD~V~l~~Plt-~~t~~li~ 265 (595)
.+|||||. .+|+..++.++.. +.++.+ +|+... .+.+++.|+. +.++++++++.|++++++|.+ +...|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~-- 80 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS-- 80 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH--
Confidence 58999999 6799999888765 477766 687653 3456667875 458999999999999999842 211221
Q ss_pred HHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 266 ~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
+-..+.|+.|.-++-=--=..-+.++|+++.++..+
T Consensus 81 e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~ 116 (343)
T TIGR01761 81 ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGR 116 (343)
T ss_pred HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCC
Confidence 122333555533332111113345566666655443
No 386
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=94.10 E-value=0.17 Score=52.25 Aligned_cols=62 Identities=23% Similarity=0.363 Sum_probs=43.2
Q ss_pred EEEEEe-CChHHHHHHHHHhc-CCCEEEE-ECCCCc-H---HHHHH-----cCCcc-cCHHHhccccCEEEEeCC
Q 046427 194 TLAVMG-FGKVGTEVARRAKG-LGMNVIA-HDPYAQ-A---DRARA-----TGVGL-VSFEEAISTADFISLHMP 255 (595)
Q Consensus 194 tvGIIG-lG~IG~~vA~~l~~-~G~~V~~-~d~~~~-~---~~a~~-----~g~~~-~~l~ell~~aD~V~l~~P 255 (595)
+|+|+| +|+||+.+++.+.. -++++.+ +|+..+ . ..... .|+.. .+++++...+|+|+.++|
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~ 77 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT 77 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence 799999 69999999999884 6888776 674321 1 11111 23433 478888667899999986
No 387
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=94.08 E-value=1.1 Score=47.71 Aligned_cols=65 Identities=22% Similarity=0.142 Sum_probs=47.5
Q ss_pred e-cCCEEEEEeCC-------hHHHHHHHHHhcCCCEEEEECC-C---CcHHH-------HHHcCC--c-ccCHHHhcccc
Q 046427 190 L-VGKTLAVMGFG-------KVGTEVARRAKGLGMNVIAHDP-Y---AQADR-------ARATGV--G-LVSFEEAISTA 247 (595)
Q Consensus 190 l-~gktvGIIGlG-------~IG~~vA~~l~~~G~~V~~~d~-~---~~~~~-------a~~~g~--~-~~~l~ell~~a 247 (595)
+ .|++|+|++.| ++.++++..+..||++|....| . ...+. +.+.|. . ..++++.+++|
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a 245 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA 245 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 5 68999877643 7888999999999999999988 2 22221 223453 2 24799999999
Q ss_pred CEEEEeC
Q 046427 248 DFISLHM 254 (595)
Q Consensus 248 D~V~l~~ 254 (595)
|+|..-.
T Consensus 246 Dvvy~~~ 252 (335)
T PRK04523 246 DVVYAKS 252 (335)
T ss_pred CEEEece
Confidence 9998743
No 388
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.03 E-value=0.19 Score=41.70 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=45.2
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC---CC-cHHHHHHHhc
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE---EP-SREVLKKIGE 583 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~---~~-~~e~l~~L~~ 583 (595)
+=+...||||.+..|+..|.+.|++|.+.+++-...|+.+.-++-++. ++ +++.+++|++
T Consensus 3 lev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~ 66 (75)
T cd04896 3 LQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCA 66 (75)
T ss_pred EEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHH
Confidence 446789999999999999999999999999975567777765555533 33 4455666543
No 389
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.98 E-value=0.17 Score=53.88 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=37.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCC---C-cHHHHHHcCCc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY---A-QADRARATGVG 236 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~---~-~~~~a~~~g~~ 236 (595)
.|+++.|+|.|.+|...++.++..|.+|++.++. . ..+.+++.|+.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~ 221 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT 221 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Confidence 5789999999999999999999999999999873 2 33445666654
No 390
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.93 E-value=0.33 Score=50.73 Aligned_cols=46 Identities=37% Similarity=0.532 Sum_probs=40.8
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCCc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGVG 236 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~ 236 (595)
.|.|++|+|||.+|.+++.-++++|. ++++.|-+. ..+.+++.|++
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaT 239 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGAT 239 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcc
Confidence 58899999999999999999999996 899999887 45778888874
No 391
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.92 E-value=0.22 Score=49.62 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=32.2
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4889999999999999999999998887 58888765
No 392
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.92 E-value=0.018 Score=62.15 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=39.4
Q ss_pred HHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 170 QADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 170 ~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.+.++++-..|... .-..|.+++|.|||+|-+|..+|+.|...|. ++..+|..
T Consensus 21 ry~Rqi~l~~~g~~--~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 21 RTARQLALPGFGIE--QQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HhhcccchhhhCHH--HHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 34444444445432 1135899999999999999999999999996 78888764
No 393
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=93.90 E-value=0.072 Score=55.55 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=40.7
Q ss_pred ccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC
Q 046427 521 GSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE 571 (595)
Q Consensus 521 ~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~ 571 (595)
...+.+.-+|+||+++.|++.|+++|+||.+++..+...++.-.|.+.++-
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~ 56 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG 56 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe
Confidence 345667789999999999999999999999999987445555566555554
No 394
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.87 E-value=0.14 Score=59.19 Aligned_cols=89 Identities=17% Similarity=0.250 Sum_probs=62.0
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc-----CH---H-HhccccCEEEEeCCCChhcc
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV-----SF---E-EAISTADFISLHMPLTPATS 261 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----~l---~-ell~~aD~V~l~~Plt~~t~ 261 (595)
.+++-|+|+|++|+.+|+.+++.|.++++.|.+.. .+.+++.|+... +. + .-+++||.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 46799999999999999999999999999998763 455566676422 22 2 23568999999998665554
Q ss_pred ccccHHHHhcCCCceEEEecc
Q 046427 262 KMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~a 282 (595)
.++ ...+.+.|+..++--+
T Consensus 480 ~i~--~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIARA 498 (621)
T ss_pred HHH--HHHHHhCCCCeEEEEE
Confidence 443 2333455665554433
No 395
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=93.86 E-value=0.11 Score=54.22 Aligned_cols=85 Identities=21% Similarity=0.248 Sum_probs=57.1
Q ss_pred EEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC------------cHHH--------------HHHc--CCcc-------
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA------------QADR--------------ARAT--GVGL------- 237 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~------------~~~~--------------a~~~--g~~~------- 237 (595)
+|.|+|+|-+|..+|+.|...|. ++..+|... ..+. .++. +++.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 58999999999999999999986 577766321 0000 0111 1110
Q ss_pred ----------------c---CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 238 ----------------V---SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 238 ----------------~---~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
. .++++++++|+|+.++- +-+++.+++..-... +..+||.+
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tD-n~esR~L~~~~~~~~---~k~~I~aa 140 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTD-SRESRWLPTLLSAAK---NKLVINAA 140 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCC-CHHHHHHHHHHHHHh---CCcEEEEE
Confidence 0 15688999999999995 677888887655442 33777765
No 396
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.82 E-value=0.15 Score=53.74 Aligned_cols=64 Identities=17% Similarity=0.319 Sum_probs=47.8
Q ss_pred CEEEEEeCChHHH-HHHHHHhcCC--CEEE-EECCCCc--HHHHHHcCCc--ccCHHHhccc--cCEEEEeCCC
Q 046427 193 KTLAVMGFGKVGT-EVARRAKGLG--MNVI-AHDPYAQ--ADRARATGVG--LVSFEEAIST--ADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGlG~IG~-~vA~~l~~~G--~~V~-~~d~~~~--~~~a~~~g~~--~~~l~ell~~--aD~V~l~~Pl 256 (595)
.++||||+|.+++ ..+..++..+ +++. .+|++.. ...+.+.|+. +.+++++++. .|+|++|+|.
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~ 77 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPN 77 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCC
Confidence 4799999997775 4777787765 4544 4688763 3456677874 4589999986 5999999994
No 397
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.78 E-value=0.14 Score=53.53 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=33.0
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA 225 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 225 (595)
.+.||++.|+|.|-.+++++..+...|. +|.+++|+.
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 5788999999999999999999988886 799999874
No 398
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.78 E-value=0.19 Score=54.50 Aligned_cols=75 Identities=15% Similarity=0.141 Sum_probs=49.5
Q ss_pred hhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHh
Q 046427 133 SAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAK 212 (595)
Q Consensus 133 ~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~ 212 (595)
.+..+.|-.+...+......... ..|++ .-+.|... .-..|.+++|.|+|+|-+|+.+|+.|.
T Consensus 93 ~~W~~~g~p~~~~~~~s~~~~~~--------y~r~i-------~l~~~g~~--~q~~l~~~~VlvvG~GG~Gs~ia~~La 155 (376)
T PRK08762 93 SAWKDAGLPLERPRLLTDEQDER--------YSRHL-------RLPEVGEE--GQRRLLEARVLLIGAGGLGSPAALYLA 155 (376)
T ss_pred HHHHhcCCccccccCCCHHHHHH--------HHHhc-------chhhcCHH--HHHHHhcCcEEEECCCHHHHHHHHHHH
Confidence 45556677666665555443321 22332 22334321 113589999999999999999999999
Q ss_pred cCCC-EEEEECCC
Q 046427 213 GLGM-NVIAHDPY 224 (595)
Q Consensus 213 ~~G~-~V~~~d~~ 224 (595)
..|. ++..+|+.
T Consensus 156 ~~Gvg~i~lvD~d 168 (376)
T PRK08762 156 AAGVGTLGIVDHD 168 (376)
T ss_pred HcCCCeEEEEeCC
Confidence 9997 68888875
No 399
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=93.74 E-value=0.14 Score=53.43 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=37.8
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcC
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVD 570 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d 570 (595)
..+.+..+|+||+|+.|++.|.++++||.+++..-...++.=.|.++++
T Consensus 8 ~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~ 56 (286)
T PRK13011 8 FVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFH 56 (286)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEe
Confidence 4566778999999999999999999999999986223333444555654
No 400
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=93.74 E-value=0.15 Score=58.20 Aligned_cols=127 Identities=16% Similarity=0.201 Sum_probs=81.1
Q ss_pred CceEEeCC-CCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccce-eeecCCEEEEEeCChHHHHHHHHHhcCCC
Q 046427 139 GCLVVNAP-TANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVG-VSLVGKTLAVMGFGKVGTEVARRAKGLGM 216 (595)
Q Consensus 139 gI~V~n~p-~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~gktvGIIGlG~IG~~vA~~l~~~G~ 216 (595)
|-+++|-. -.+....||-++-|=|-+.| |.--.-.+ ..|++.+|.|||+|-+|..+|+.|.+.|.
T Consensus 296 ~pr~~dL~~~mdP~~la~~avdlnlkLmk-------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GV 362 (664)
T TIGR01381 296 QPISVDLSKEFDPKRLAERSVDLNLKLMK-------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGV 362 (664)
T ss_pred CceEechhhhcCHHHHHHHHHHHHHHHHh-------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCC
Confidence 34445433 35666778887776665554 64321112 35889999999999999999999999997
Q ss_pred -EEEEECCCC------------cHH-----------HH----HHc--CCc------c-------c-------------CH
Q 046427 217 -NVIAHDPYA------------QAD-----------RA----RAT--GVG------L-------V-------------SF 240 (595)
Q Consensus 217 -~V~~~d~~~------------~~~-----------~a----~~~--g~~------~-------~-------------~l 240 (595)
+++.+|... ..+ .+ ++. +++ . + .+
T Consensus 363 g~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l 442 (664)
T TIGR01381 363 RHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARL 442 (664)
T ss_pred CeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHH
Confidence 566666310 000 00 011 110 0 1 24
Q ss_pred HHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 241 EEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 241 ~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.++++++|+|+.|+- +-+++.+++..-.. .+..+|+.+
T Consensus 443 ~~Li~~~DvV~d~tD-n~esR~L~n~~c~~---~~kplI~aA 480 (664)
T TIGR01381 443 EQLIKDHDVVFLLLD-SREARWLPTVLCSR---HKKIAISAA 480 (664)
T ss_pred HHHHhhCCEEEECCC-CHHHHHHHHHHHHH---hCCCEEEEE
Confidence 578999999999987 66789888765543 345667665
No 401
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.70 E-value=0.23 Score=60.10 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=46.1
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcC-CCE-------------EEEECCCCcHH--HHHHc-CC---cc--cCHHH---hcc
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGL-GMN-------------VIAHDPYAQAD--RARAT-GV---GL--VSFEE---AIS 245 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~-G~~-------------V~~~d~~~~~~--~a~~~-g~---~~--~~l~e---ll~ 245 (595)
+.|+|+|||.|.||+.+|+.+... +.+ |.+.|++.... .+... ++ .. .+.++ +++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 467999999999999999999753 333 88889876322 22222 42 22 24444 446
Q ss_pred ccCEEEEeCCC
Q 046427 246 TADFISLHMPL 256 (595)
Q Consensus 246 ~aD~V~l~~Pl 256 (595)
++|+|+.|+|.
T Consensus 648 ~~DaVIsalP~ 658 (1042)
T PLN02819 648 QVDVVISLLPA 658 (1042)
T ss_pred CCCEEEECCCc
Confidence 89999999995
No 402
>PRK12862 malic enzyme; Reviewed
Probab=93.69 E-value=2.2 Score=50.51 Aligned_cols=174 Identities=20% Similarity=0.101 Sum_probs=115.5
Q ss_pred CCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCC-
Q 046427 138 HGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM- 216 (595)
Q Consensus 138 ~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~- 216 (595)
.+|.|.|+- -..+|=-+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 160 ~~ip~f~DD---~~GTa~v~la~l~~a~~------------------~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 218 (763)
T PRK12862 160 MKIPVFHDD---QHGTAIIVAAALLNGLK------------------LVGKDIEDVKLVASGAGAAALACLDLLVSLGVK 218 (763)
T ss_pred CCCceEecC---cccHHHHHHHHHHHHHH------------------HhCCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence 369999983 23455567777887777 23567888999999999999999999998898
Q ss_pred --EEEEECCCC----------cH---HHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEec
Q 046427 217 --NVIAHDPYA----------QA---DRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 217 --~V~~~d~~~----------~~---~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~ 281 (595)
+++.+|+.- .. ..++.. ...+|.|+++.+|+++=.- +-+.+.++.++.|.+..+|.=.
T Consensus 219 ~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~--~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifal 291 (763)
T PRK12862 219 RENIWVTDIKGVVYEGRTELMDPWKARYAQKT--DARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPLIFAL 291 (763)
T ss_pred cccEEEEcCCCeeeCCCCccccHHHHHHhhhc--ccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEeC
Confidence 788888531 11 122222 2348999999999987533 2589999999999999999999
Q ss_pred cCCchh-cHHHHHHHHhcCCeeEEEEecCCCCCCCCCcccccCCcEEEcCCCCC---------CcHHHHHHHHHHHHHH
Q 046427 282 ARGGVV-DEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGA---------STTEAQEGVAIEIAEA 350 (595)
Q Consensus 282 arg~~v-d~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPHi~~---------~t~ea~~~~~~~~~~~ 350 (595)
|.-... ..++.+++=. |.|.+.|-. ..| =+.-|+++-|-++- -|++.....++.+++.
T Consensus 292 sNP~~E~~p~~a~~~~~-~~i~atGrs---~~p-------~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~ 359 (763)
T PRK12862 292 ANPTPEILPEEARAVRP-DAIIATGRS---DYP-------NQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAEL 359 (763)
T ss_pred CCCcccCCHHHHHHhcC-CEEEEECCc---CCC-------CcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhc
Confidence 865532 2333344422 456555511 111 12347777776652 3455555444444443
No 403
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.68 E-value=0.15 Score=56.63 Aligned_cols=90 Identities=16% Similarity=0.035 Sum_probs=64.3
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHH--HHHc-CCccc--C-HHHhccccCEEEEeCCCChhcc
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR--ARAT-GVGLV--S-FEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~-g~~~~--~-l~ell~~aD~V~l~~Plt~~t~ 261 (595)
.+|.||+|.|||-|.++..=++.+..+|.+|.++.|....+. ..+. .+++. + ..+.++.+++|+.|+...+
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~--- 84 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA--- 84 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH---
Confidence 579999999999999999988899999999999998765432 1122 23222 1 2456788999988876443
Q ss_pred ccccHHHHhcCCCceEEEecc
Q 046427 262 KMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~a 282 (595)
+|+......+...+++|++
T Consensus 85 --~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 85 --VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred --HhHHHHHHHHHcCcEEEEC
Confidence 4555555555556788875
No 404
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.66 E-value=0.087 Score=53.53 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=31.6
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|++++|.|+|+|-+|+.+|+.|...|. ++..+|+.
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5889999999999999999999998886 67777754
No 405
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.55 E-value=0.27 Score=40.44 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=44.1
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEc---C-CCC-cHHHHHHHhc
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGV---D-EEP-SREVLKKIGE 583 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~---d-~~~-~~e~l~~L~~ 583 (595)
.+=+...|+||.+..|++.|.++|++|..-.++ ..|+.+.-++-+ + .++ +++.+++|++
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~ 66 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEK 66 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 455778999999999999999999999998885 455666555444 3 233 4577777764
No 406
>PRK04148 hypothetical protein; Provisional
Probab=93.53 E-value=0.17 Score=46.76 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=48.9
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCccc--C----HHHhccccCEEEEeCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVGLV--S----FEEAISTADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~--~----l~ell~~aD~V~l~~P 255 (595)
+++++..||+| -|..+|..|+..|.+|++.|.+.. .+.+++.++..+ + --++.+.+|+|--+=|
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56789999999 899999999999999999998763 344555555322 2 2366778888877766
No 407
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.53 E-value=0.28 Score=39.88 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=39.8
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE 571 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~ 571 (595)
+.+++..+|+||+.+.+++.|..+++||...++.... .|.++-.+.+..
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~-dG~~LDtF~V~d 50 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTD-DGLALDIFVVTG 50 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcC-CCeEEEEEEEec
Confidence 4678888999999999999999999999999997654 445666555444
No 408
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=93.51 E-value=0.34 Score=53.27 Aligned_cols=105 Identities=21% Similarity=0.283 Sum_probs=66.6
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc--HH----HHH-HcCCccc---CHHHhccccCEEEEeCCCChhcc--
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ--AD----RAR-ATGVGLV---SFEEAISTADFISLHMPLTPATS-- 261 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~----~a~-~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~-- 261 (595)
++.|||+|.+|.++|+.|+..|++|.++|.... .. ... ..|+... + .+.+.++|+|+..--..+...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 378999999999999999999999999997542 11 111 2466542 3 455688998877542222111
Q ss_pred --------ccccHHHH--hcCCCceEEEeccCCchhcHHHHHHHHhcC
Q 046427 262 --------KMFNDEAF--FKMKKGVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 262 --------~li~~~~l--~~mk~gailiN~arg~~vd~~aL~~aL~~g 299 (595)
.++.+.++ ..++.-.+-|--+.|+.-...-+...|+..
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~ 127 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAA 127 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 12333322 234444566666689987676666777653
No 409
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.43 E-value=0.17 Score=55.90 Aligned_cols=107 Identities=21% Similarity=0.174 Sum_probs=66.0
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH---HHHHH--cCCccc---CHHHhccccCEEEEeCCCChhcc--
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA---DRARA--TGVGLV---SFEEAISTADFISLHMPLTPATS-- 261 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~--~g~~~~---~l~ell~~aD~V~l~~Plt~~t~-- 261 (595)
+-+++|+|+|.+|.++|+.|+..|++|.++|..... +...+ .|+... .-.+.+.++|+|+..--..+...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~ 85 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL 85 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence 458999999999999999999999999999975422 11222 365442 12345678998877432221111
Q ss_pred --------ccccHHH-H-hcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 262 --------KMFNDEA-F-FKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 262 --------~li~~~~-l-~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.++.+.+ + ..++.-.+-|--+.|+.-...-+...|+.
T Consensus 86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 1233322 2 22343345555557888666666666664
No 410
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.43 E-value=0.18 Score=55.71 Aligned_cols=109 Identities=14% Similarity=0.140 Sum_probs=68.4
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH---HHHHH--cCCccc--C-HHHhccccCEEEEeCCCChhcc
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA---DRARA--TGVGLV--S-FEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~--~g~~~~--~-l~ell~~aD~V~l~~Plt~~t~ 261 (595)
+.+|++.|+|.|.+|.++|+.|...|++|.++|..... ....+ .|+... . -++.+.++|+|+..--..+...
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 56899999999999999999999999999999976532 12222 365432 1 2345578999988544333221
Q ss_pred c----------cccHH-HHh-cCC---CceEEEeccCCchhcHHHHHHHHhc
Q 046427 262 K----------MFNDE-AFF-KMK---KGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 262 ~----------li~~~-~l~-~mk---~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
. ++.+. .+. .++ ...+-|-=+-|+.-...-+...|+.
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~ 134 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK 134 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 1 22222 222 232 2345555557887666666666654
No 411
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.41 E-value=0.15 Score=56.84 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=67.5
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc--HH---HHHHcCCccc---CHHHhccccCEEEEeCCCChhc-
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ--AD---RARATGVGLV---SFEEAISTADFISLHMPLTPAT- 260 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~---~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t- 260 (595)
+.||+++|+|+|.-|.+.|+.|+..|.+|+++|.... .. ...+ +.... .-.+.+.++|+|+..--..+..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p 84 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALAD-AALLVETEASAQRLAAFDVVVKSPGISPYRP 84 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCChHHccCCCEEEECCCCCCCCH
Confidence 4689999999999999999999999999999996431 11 1112 32221 1235678899998754222211
Q ss_pred ---------cccccHHHH--hc-CC-----CceEEEeccCCchhcHHHHHHHHhc
Q 046427 261 ---------SKMFNDEAF--FK-MK-----KGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 261 ---------~~li~~~~l--~~-mk-----~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
..++++-++ .. ++ ...+-|--+-|+.-...-+.+.|+.
T Consensus 85 ~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 85 EALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred HHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 123444443 22 32 1345555557888666666666654
No 412
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=93.36 E-value=0.097 Score=46.66 Aligned_cols=96 Identities=22% Similarity=0.299 Sum_probs=58.7
Q ss_pred eCChHHHHHHHHHhcC----CCEEEE-ECCC--CcHHH-HH-HcCCcccCHHHhcc--ccCEEEEeCCCChhccccccHH
Q 046427 199 GFGKVGTEVARRAKGL----GMNVIA-HDPY--AQADR-AR-ATGVGLVSFEEAIS--TADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 199 GlG~IG~~vA~~l~~~----G~~V~~-~d~~--~~~~~-a~-~~g~~~~~l~ell~--~aD~V~l~~Plt~~t~~li~~~ 267 (595)
|+|.||+.+++.+... ++++.+ +|+. ..... .. .......++++++. ..|+|+=|.+..+ .. .-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~-~~----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEA-VA----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHH-HH----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchH-HH----HH
Confidence 8999999999999854 677665 5665 11111 11 12223458999998 9999999976432 22 22
Q ss_pred HHhcCCCceEEEeccCCchhc---HHHHHHHHhcC
Q 046427 268 AFFKMKKGVRIVNVARGGVVD---EEALVRALDSG 299 (595)
Q Consensus 268 ~l~~mk~gailiN~arg~~vd---~~aL~~aL~~g 299 (595)
....|+.|.-+|-++.+.+.| .+.|.++.+++
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~ 110 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKN 110 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHc
Confidence 334477888999988888872 44555554443
No 413
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=93.33 E-value=0.23 Score=52.28 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=54.0
Q ss_pred EEEEEeC-ChHHHHHHHHHhcCC-CEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhc
Q 046427 194 TLAVMGF-GKVGTEVARRAKGLG-MNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFK 271 (595)
Q Consensus 194 tvGIIGl-G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~ 271 (595)
+|+|+|- |-.|.++.++|.... +++........ +...+.+++++++|++++|+|. .....+... +
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~--------~~~~~~~~~~~~~D~vFlalp~-~~s~~~~~~--~-- 69 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------KDAAERAKLLNAADVAILCLPD-DAAREAVSL--V-- 69 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc--------cCcCCHhHhhcCCCEEEECCCH-HHHHHHHHH--H--
Confidence 7999997 999999999999764 56666533221 2223567888899999999994 344444422 2
Q ss_pred CCCceEEEecc
Q 046427 272 MKKGVRIVNVA 282 (595)
Q Consensus 272 mk~gailiN~a 282 (595)
.+.|+.+||.|
T Consensus 70 ~~~g~~VIDlS 80 (310)
T TIGR01851 70 DNPNTCIIDAS 80 (310)
T ss_pred HhCCCEEEECC
Confidence 35689999987
No 414
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=93.33 E-value=0.16 Score=52.84 Aligned_cols=95 Identities=24% Similarity=0.307 Sum_probs=70.0
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HHHHHHcCCc---------------cc----------CH
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-ADRARATGVG---------------LV----------SF 240 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~---------------~~----------~l 240 (595)
+-...+.++-++|+|-+|-..+-..+..|+-|..+|-... .+.-++.|.+ .. -+
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~ 238 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV 238 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence 3456777889999999999999999999999999986542 2222222221 11 14
Q ss_pred HHhccccCEEEEe--CCCChhccccccHHHHhcCCCceEEEecc
Q 046427 241 EEAISTADFISLH--MPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 241 ~ell~~aD~V~l~--~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
.+..++.|+|+.. +|-.| .-.++.++..+.||||+++||.+
T Consensus 239 a~~~~~~DivITTAlIPGrp-AP~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 239 AEQAKEVDIVITTALIPGRP-APKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHHhcCCCEEEEecccCCCC-CchhhHHHHHHhcCCCcEEEEeh
Confidence 5678899999874 45544 45678899999999999999987
No 415
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.29 E-value=0.2 Score=58.58 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=54.4
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEE--EEcCCCCc-HHHHHHHhcCCCcceEEE
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMT--IGVDEEPS-REVLKKIGETPAIEEFVF 592 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~v--i~~d~~~~-~e~l~~L~~~~~v~~v~~ 592 (595)
.|.+...|++|+++.|++++++.++||.++++....+++.+.+. |++.+.-. ..++.+|+++++|.+|+-
T Consensus 668 ~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R 740 (743)
T PRK10872 668 VVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR 740 (743)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEe
Confidence 35577899999999999999999999999998544435555555 44444322 289999999999999864
No 416
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=93.29 E-value=1.4 Score=47.09 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=47.6
Q ss_pred eecCCEEEEEeC---ChHHHHHHHHHh-cCCCEEEEECCCC---cHH---HHHHcCCc--c-cCHHHhccccCEEEEe
Q 046427 189 SLVGKTLAVMGF---GKVGTEVARRAK-GLGMNVIAHDPYA---QAD---RARATGVG--L-VSFEEAISTADFISLH 253 (595)
Q Consensus 189 ~l~gktvGIIGl---G~IG~~vA~~l~-~~G~~V~~~d~~~---~~~---~a~~~g~~--~-~~l~ell~~aD~V~l~ 253 (595)
.+.|++|++||= +++..+.+..+. -+|++|....|.. +.+ .+.+.|.. . .++++.+++||+|..-
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 588999999998 588888888766 4599998887643 222 22334532 2 4799999999999883
No 417
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=93.26 E-value=0.15 Score=48.54 Aligned_cols=63 Identities=25% Similarity=0.304 Sum_probs=47.9
Q ss_pred EEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-----c---CHHHhccccCEEEEeCCCCh
Q 046427 195 LAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL-----V---SFEEAISTADFISLHMPLTP 258 (595)
Q Consensus 195 vGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-----~---~l~ell~~aD~V~l~~Plt~ 258 (595)
|.|+|- |.+|+.+++.|...|.+|.+..|+...... ..+++. . ++.+.++.+|.|+.+++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 578895 999999999999999999999887643221 344432 1 35678889999999997544
No 418
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=93.25 E-value=0.13 Score=52.31 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=47.4
Q ss_pred CccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCCCc
Q 046427 520 EGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPS 574 (595)
Q Consensus 520 ~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~~~ 574 (595)
+...|.+..+|+||++++|++.|.++|.||..-.-.....++.=+|.++++..-.
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~ 60 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGG 60 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCC
Confidence 4567888999999999999999999999999888876666778889988877654
No 419
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.17 E-value=0.23 Score=49.86 Aligned_cols=90 Identities=11% Similarity=0.032 Sum_probs=58.9
Q ss_pred eeeecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHH--HHc-CCccc--C-HHHhccccCEEEEeCCCChhc
Q 046427 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA--RAT-GVGLV--S-FEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 187 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~-g~~~~--~-l~ell~~aD~V~l~~Plt~~t 260 (595)
-.++.|++|.|||-|.++..=++.|..+|.+|.++.|....+.. ... .+++. + -.+-+..+++|+.|+...+
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~-- 97 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEK-- 97 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHH--
Confidence 34677999999999999999888899999999999998754421 111 23221 1 1234578888888876333
Q ss_pred cccccHHHHhcCCCceEEEec
Q 046427 261 SKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~ 281 (595)
+|+......+.-.+++|+
T Consensus 98 ---vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 98 ---LNNKIRKHCDRLYKLYID 115 (223)
T ss_pred ---HHHHHHHHHHHcCCeEEE
Confidence 334333334443455664
No 420
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.13 E-value=0.37 Score=39.86 Aligned_cols=58 Identities=10% Similarity=0.148 Sum_probs=41.5
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC---C-CcHHHHHHHh
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE---E-PSREVLKKIG 582 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~---~-~~~e~l~~L~ 582 (595)
|=+..+|+||..+.++..|.++|+||...++... .++.++-++.+.+ . .+++.+++++
T Consensus 3 ~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt-~~~~v~D~F~V~d~~~~~~~~~~~~~l~ 64 (76)
T cd04927 3 LKLFCSDRKGLLHDVTEVLYELELTIERVKVSTT-PDGRVLDLFFITDARELLHTKKRREETY 64 (76)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEEC-CCCEEEEEEEEeCCCCCCCCHHHHHHHH
Confidence 3356789999999999999999999999999753 4456766555422 2 2445555443
No 421
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=93.07 E-value=1.6 Score=47.55 Aligned_cols=65 Identities=29% Similarity=0.375 Sum_probs=48.9
Q ss_pred eecCCEEEEEeC-----C---hHHHHHHHHHhcCCCEEEEECCCC---cHH---H----HHHcCC--c-ccCHHHhcccc
Q 046427 189 SLVGKTLAVMGF-----G---KVGTEVARRAKGLGMNVIAHDPYA---QAD---R----ARATGV--G-LVSFEEAISTA 247 (595)
Q Consensus 189 ~l~gktvGIIGl-----G---~IG~~vA~~l~~~G~~V~~~d~~~---~~~---~----a~~~g~--~-~~~l~ell~~a 247 (595)
.+.|++|+|+|- | ++.++++..+..+|++|....|.. ..+ . +++.|. + ..++++.+++|
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 378999999985 5 567899999999999999988752 122 1 233453 2 24899999999
Q ss_pred CEEEEe
Q 046427 248 DFISLH 253 (595)
Q Consensus 248 D~V~l~ 253 (595)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999885
No 422
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=93.05 E-value=0.3 Score=46.37 Aligned_cols=71 Identities=17% Similarity=0.307 Sum_probs=53.9
Q ss_pred CccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCC--CCcHHHHHHHhcCCCcceE
Q 046427 520 EGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE--EPSREVLKKIGETPAIEEF 590 (595)
Q Consensus 520 ~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~--~~~~e~l~~L~~~~~v~~v 590 (595)
..++|.+.-.|+||++.++..++++.|.||..+.++..+..+.+-|.+-+.. ..-+++.++|.++-.|..|
T Consensus 3 m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV 75 (163)
T COG0440 3 MRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKV 75 (163)
T ss_pred ceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeE
Confidence 3467777788999999999999999999999999998776667766665555 3445666666665555544
No 423
>PRK12861 malic enzyme; Reviewed
Probab=93.05 E-value=2.4 Score=49.97 Aligned_cols=120 Identities=18% Similarity=0.137 Sum_probs=90.8
Q ss_pred CceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEEEeCChHHHHHHHHHhcCCC--
Q 046427 139 GCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGM-- 216 (595)
Q Consensus 139 gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-- 216 (595)
.|.|.|+- -..+|=-+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 157 ~ipvf~DD---~qGTa~v~lA~llnal~------------------~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~ 215 (764)
T PRK12861 157 KIPVFHDD---QHGTAITVSAAFINGLK------------------VVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPV 215 (764)
T ss_pred CCCeeccc---cchHHHHHHHHHHHHHH------------------HhCCChhHcEEEEECHhHHHHHHHHHHHHcCCCh
Confidence 79999983 33456677788887777 23557888999999999999999999999998
Q ss_pred -EEEEECCCC----------cH---HHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEecc
Q 046427 217 -NVIAHDPYA----------QA---DRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 217 -~V~~~d~~~----------~~---~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~a 282 (595)
+++.+|+.- .. ..++.. ...+|.|+++.+|+++= +. .-+.+.++.++.|.+..+|.=.|
T Consensus 216 ~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~--~~~~L~eai~~advliG-~S----~~g~ft~e~v~~Ma~~PIIFaLs 288 (764)
T PRK12861 216 ENIWVTDIEGVVYRGRTTLMDPDKERFAQET--DARTLAEVIGGADVFLG-LS----AGGVLKAEMLKAMAARPLILALA 288 (764)
T ss_pred hhEEEEcCCCeeeCCCcccCCHHHHHHHhhc--CCCCHHHHHhcCCEEEE-cC----CCCCCCHHHHHHhccCCEEEECC
Confidence 788888431 11 122221 23489999999998754 33 25899999999999999999988
Q ss_pred CCch
Q 046427 283 RGGV 286 (595)
Q Consensus 283 rg~~ 286 (595)
.-..
T Consensus 289 NPtp 292 (764)
T PRK12861 289 NPTP 292 (764)
T ss_pred CCCc
Confidence 6543
No 424
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=93.05 E-value=0.3 Score=50.84 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=60.8
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHcC---C--cccCHHHh--ccccCEEEEeCCCC
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARATG---V--GLVSFEEA--ISTADFISLHMPLT 257 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g---~--~~~~l~el--l~~aD~V~l~~Plt 257 (595)
....|+++.|+|.|-.+++++..|+..|. +|.+++|.... +.+...+ . ....+.++ +.++|+|+-++|.-
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 35678999999999999999999999995 79999997632 2222222 1 12222222 22689999999864
Q ss_pred hhcc---ccccHHHHhcCCCceEEEeccCCc
Q 046427 258 PATS---KMFNDEAFFKMKKGVRIVNVARGG 285 (595)
Q Consensus 258 ~~t~---~li~~~~l~~mk~gailiN~arg~ 285 (595)
-.-. ..++ ...++++.++.|+-=.+
T Consensus 202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P 229 (283)
T COG0169 202 MAGPEGDSPVP---AELLPKGAIVYDVVYNP 229 (283)
T ss_pred CCCCCCCCCCc---HHhcCcCCEEEEeccCC
Confidence 3221 1222 33456666766665433
No 425
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=93.04 E-value=0.18 Score=49.57 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=33.5
Q ss_pred eeecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC
Q 046427 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA 225 (595)
Q Consensus 188 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 225 (595)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 35899999999999999999999999997 588888653
No 426
>PRK05086 malate dehydrogenase; Provisional
Probab=93.00 E-value=0.47 Score=50.12 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=43.9
Q ss_pred CEEEEEeC-ChHHHHHHHHHh---cCCCEEEEECCCCcHH----HHHHcC--C--c---ccCHHHhccccCEEEEeCCC
Q 046427 193 KTLAVMGF-GKVGTEVARRAK---GLGMNVIAHDPYAQAD----RARATG--V--G---LVSFEEAISTADFISLHMPL 256 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~---~~G~~V~~~d~~~~~~----~a~~~g--~--~---~~~l~ell~~aD~V~l~~Pl 256 (595)
++|+|||. |.||+++|..+. ..+.++..+|+..... ...+.+ . . ..++.+.+++||+|++|+-.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 58999999 999999998774 3456888998754210 011111 1 1 12566888999999998864
No 427
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=92.93 E-value=0.25 Score=56.62 Aligned_cols=69 Identities=19% Similarity=0.345 Sum_probs=50.1
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc-HH-HHHHcCC--cccC---HHHhccccCEEEEeCCCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ-AD-RARATGV--GLVS---FEEAISTADFISLHMPLT 257 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~-~a~~~g~--~~~~---l~ell~~aD~V~l~~Plt 257 (595)
....|+|||||-|..|+.+++.++.+|++|+.+|+... .. ......+ .+.+ +.++++++|+|+.+....
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v 94 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHV 94 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCC
Confidence 37789999999999999999999999999999998653 11 1111111 1223 566788899998765543
No 428
>PRK08223 hypothetical protein; Validated
Probab=92.89 E-value=0.18 Score=52.56 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=31.4
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|++++|.|||+|-+|..+|+.|...|. ++..+|..
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4899999999999999999999998886 67777654
No 429
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.87 E-value=0.36 Score=53.11 Aligned_cols=108 Identities=16% Similarity=0.168 Sum_probs=66.2
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHH--HHHHcCCccc---CHHHhccccCEEEEeCCCChhccc--
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD--RARATGVGLV---SFEEAISTADFISLHMPLTPATSK-- 262 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~g~~~~---~l~ell~~aD~V~l~~Plt~~t~~-- 262 (595)
+.+|++.|+|+|..|.+.++.|+..|.+|.++|...... ...+.|+... .-.+.++..|+|+. .|-.+....
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~-spgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVA-SPGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEE-CCCCCCCCHHH
Confidence 568899999999999999999999999999999754321 1122365432 12345677897655 443332211
Q ss_pred ---------cccH-HHHhc-CCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 263 ---------MFND-EAFFK-MKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 263 ---------li~~-~~l~~-mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
++.. +.+.. ++.-.+-|--+.|+.-...-|.+.|+.
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2222 22222 332344455557887666666667764
No 430
>PRK07877 hypothetical protein; Provisional
Probab=92.85 E-value=0.15 Score=59.62 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=63.0
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC--EEEEECCCC------cHH-------------HH----HHc--CCc-----
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYA------QAD-------------RA----RAT--GVG----- 236 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~------~~~-------------~a----~~~--g~~----- 236 (595)
.|++++|+|+|+| +|+.+|..|...|. ++..+|... ... .+ .+. .++
T Consensus 104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 4899999999999 89999999998773 677766421 000 01 111 111
Q ss_pred -c---cCHHHhccccCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchhc
Q 046427 237 -L---VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVD 288 (595)
Q Consensus 237 -~---~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~vd 288 (595)
. .++++++.++|+|+-|+- +-+++.++++...+.-+| +|.-.+-++.+|
T Consensus 183 ~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~iP--~i~~~~~~g~~~ 235 (722)
T PRK07877 183 DGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRIP--VLMATSDRGLLD 235 (722)
T ss_pred ccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCCC--EEEEcCCCCCcC
Confidence 1 147888999999999887 567899998776654332 444444334444
No 431
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.83 E-value=0.29 Score=53.91 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=48.1
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHc--CCccc-----C---H-HHhccccCEEEEeCCCC
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARAT--GVGLV-----S---F-EEAISTADFISLHMPLT 257 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--g~~~~-----~---l-~ell~~aD~V~l~~Plt 257 (595)
+..+++.|+|+|.+|+.+++.|...|.+|+++|.+... +...+. ++..+ + | +.-+.++|.|+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 44688999999999999999999999999999877632 222222 33211 2 2 22356888888877743
No 432
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.81 E-value=0.24 Score=52.20 Aligned_cols=140 Identities=13% Similarity=0.148 Sum_probs=81.7
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcc-------------cCHHHhccccCEEEEeCCCChh
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGL-------------VSFEEAISTADFISLHMPLTPA 259 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-------------~~l~ell~~aD~V~l~~Plt~~ 259 (595)
++|.|+|.|.||+-++-+|...|..|...-+....+..++.|... ..-.+.+..+|+|++++-. -+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa-~q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKA-YQ 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecc-cc
Confidence 479999999999999999999997777766554444455555421 1234667799999998863 34
Q ss_pred ccccccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCeeE-EEEecCCCCCCCCCcccccCCcEEEcCCCCCCc
Q 046427 260 TSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQ-AALDVFTEEPPAKDSKLVLHENVTVTPHLGAST 336 (595)
Q Consensus 260 t~~li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i~g-a~lDv~~~EP~~~~~~L~~~~nvilTPHi~~~t 336 (595)
+...+ +......++.+.|+-.-- ++=.++.+...+...++.+ ...-....+. +..-.......+.+.+.-+...
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqN-G~g~~e~l~~~~~~~~il~G~~~~~a~~~~-~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQN-GLGHEEELRKILPKETVLGGVTTHGAVREG-PGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeC-CCcHHHHHHHhCCcceEEEEEeeeeeEecC-CceEEEecCCcEEEccCCCCch
Confidence 55554 334455777766653322 3334555566665554422 2211111121 1111233345677777666553
No 433
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=92.76 E-value=0.077 Score=45.22 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=27.7
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEee
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVG 555 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~ 555 (595)
+-+.-+|+||+++.|++.|+++|+||-++.-.
T Consensus 6 ITV~GkDr~GIva~is~vLAe~~vNIldisQt 37 (90)
T COG3830 6 ITVIGKDRVGIVAAVSRVLAEHGVNILDISQT 37 (90)
T ss_pred EEEEcCCCCchhHHHHHHHHHcCCcEEEHHHH
Confidence 34567999999999999999999999988653
No 434
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=92.61 E-value=0.19 Score=54.46 Aligned_cols=63 Identities=24% Similarity=0.307 Sum_probs=43.7
Q ss_pred EEEEeCChHHHHHHHHHhcCC-C-EEEEECCCCcH-HHHHH--c--CCcc--------cCHHHhccccCEEEEeCCCC
Q 046427 195 LAVMGFGKVGTEVARRAKGLG-M-NVIAHDPYAQA-DRARA--T--GVGL--------VSFEEAISTADFISLHMPLT 257 (595)
Q Consensus 195 vGIIGlG~IG~~vA~~l~~~G-~-~V~~~d~~~~~-~~a~~--~--g~~~--------~~l~ell~~aD~V~l~~Plt 257 (595)
|+|+|.|.+|+.+++.|...+ + +|++.|++... +...+ . .++. .+|+++++++|+|+.|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 689999999999999999765 5 89999998643 22211 1 2211 13788999999999999743
No 435
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.55 E-value=0.39 Score=50.71 Aligned_cols=87 Identities=21% Similarity=0.164 Sum_probs=55.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCCccc-CHH-HhccccCEEEEeCCCChhccccccHH
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLV-SFE-EAISTADFISLHMPLTPATSKMFNDE 267 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-~l~-ell~~aD~V~l~~Plt~~t~~li~~~ 267 (595)
.|.++.|.|.|.+|...++.++..|.+|++.++.. ..+.++++|+..+ +.. +.-+..|+++.+.... . . -..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~-~~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---L-VPP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---H-HHH
Confidence 37899999999999999999999999999988765 4566778886432 211 1112245555444321 1 1 123
Q ss_pred HHhcCCCceEEEecc
Q 046427 268 AFFKMKKGVRIVNVA 282 (595)
Q Consensus 268 ~l~~mk~gailiN~a 282 (595)
.++.++++..++.++
T Consensus 240 ~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 240 ALEALDRGGVLAVAG 254 (329)
T ss_pred HHHhhCCCcEEEEEe
Confidence 445566666665554
No 436
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.45 E-value=0.34 Score=49.82 Aligned_cols=45 Identities=31% Similarity=0.473 Sum_probs=36.4
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCE-EEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMN-VIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~g~ 235 (595)
.|+++.|+|.|.+|...++.++.+|.+ |++.|+.. ..+.+++.|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 166 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA 166 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 578999999999999999999999986 88887654 3345556664
No 437
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.39 E-value=0.33 Score=53.93 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=63.4
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHc-CCccc--CHHHhccccCEEEEeCCCChhc------
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARAT-GVGLV--SFEEAISTADFISLHMPLTPAT------ 260 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~-g~~~~--~l~ell~~aD~V~l~~Plt~~t------ 260 (595)
.||+++|+|+|.-|.+.|+.|+. |.+|+++|..... ....+. ..... .-.+.+.++|+|+..--..+..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 47899999999999999999996 9999999954321 111111 11111 1234567899987754222211
Q ss_pred ----cccccHHHH--hcCCC-ceEEEeccCCchhcHHHHHHHHhc
Q 046427 261 ----SKMFNDEAF--FKMKK-GVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 261 ----~~li~~~~l--~~mk~-gailiN~arg~~vd~~aL~~aL~~ 298 (595)
..++++-++ ..+++ ..+=|--+-|+.-...-+...|+.
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 123333333 23332 234444447888666666667765
No 438
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.34 E-value=0.33 Score=52.20 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=31.8
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|++++|.|||+|-+|..+|+.|...|. ++..+|..
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5899999999999999999999998886 67777754
No 439
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.34 E-value=0.72 Score=50.44 Aligned_cols=102 Identities=15% Similarity=0.205 Sum_probs=62.3
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhc--cccCEEEEeC--CCC-hhc---ccccc
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAI--STADFISLHM--PLT-PAT---SKMFN 265 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell--~~aD~V~l~~--Plt-~~t---~~li~ 265 (595)
++.|+|+|..|.++|+.|+ .|.+|.++|.........+.|+...+ ++.+ +++|+|+..- |.+ |+. +.++.
T Consensus 2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~i~~ 79 (401)
T PRK03815 2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLLP-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKNLIS 79 (401)
T ss_pred eEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEec-HHHcCcCCCCEEEECCCCCCCCHHHHHHHHHhh
Confidence 5899999999999999999 99999999954322212334665432 2334 4689887652 221 211 22333
Q ss_pred HHHH-h-cCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 266 DEAF-F-KMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 266 ~~~l-~-~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
+..+ . .++ ..+-|--+-|+.-..+-+...|+.
T Consensus 80 ~~e~~~~~~~-~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401)
T PRK03815 80 EYDYFYDVMP-FSIWISGTNGKTTTTQMTTHLLED 113 (401)
T ss_pred HHHHHHHhcC-CEEEEECCCcHHHHHHHHHHHHHH
Confidence 3222 2 243 355555567888666666666764
No 440
>PRK10206 putative oxidoreductase; Provisional
Probab=92.33 E-value=0.3 Score=52.18 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=42.5
Q ss_pred EEEEEeCChHHHH-HHHHHh-c-CCCEEEE-ECCCCcH-HHHHHcC-Ccc-cCHHHhcc--ccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTE-VARRAK-G-LGMNVIA-HDPYAQA-DRARATG-VGL-VSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~-vA~~l~-~-~G~~V~~-~d~~~~~-~~a~~~g-~~~-~~l~ell~--~aD~V~l~~Pl 256 (595)
++||||+|.|++. .+..+. . -++++.+ +|++... +.+.+.+ +.. .+++++++ +.|+|++|+|.
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~ 74 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHA 74 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence 7999999998863 344443 2 3578765 7876532 2233444 333 47999996 57999999994
No 441
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.30 E-value=0.54 Score=50.39 Aligned_cols=85 Identities=28% Similarity=0.350 Sum_probs=56.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHH-cCCccc-C---------HHHhcc--ccCEEEEeCCCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARA-TGVGLV-S---------FEEAIS--TADFISLHMPLT 257 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~-~g~~~~-~---------l~ell~--~aD~V~l~~Plt 257 (595)
.++.|+|.|.||.-.+..++.+|. +|++.|+.. +.+.+++ .+...+ + ..++.. .+|+++-|+. .
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-~ 248 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-S 248 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-C
Confidence 399999999999999999999995 688888876 4566666 444322 1 112222 3788888776 2
Q ss_pred hhccccccHHHHhcCCCceEEEecc
Q 046427 258 PATSKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 258 ~~t~~li~~~~l~~mk~gailiN~a 282 (595)
+.+ -...++..+++..++.++
T Consensus 249 ~~~----~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 249 PPA----LDQALEALRPGGTVVVVG 269 (350)
T ss_pred HHH----HHHHHHHhcCCCEEEEEe
Confidence 221 133455567776666665
No 442
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=92.28 E-value=0.52 Score=48.76 Aligned_cols=111 Identities=16% Similarity=0.258 Sum_probs=74.9
Q ss_pred cccHHHHHhhCCceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEEEEeCCeeEEEEEcceEEEeecC
Q 046427 441 LVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLE 520 (595)
Q Consensus 441 ~~nA~~iA~e~GI~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~GSvgGG~i~I~~Idgf~v~~~~~ 520 (595)
-+-+..-|+.-|+++-..... +.+.|+.+++.+..+. ....+ -.+.
T Consensus 148 AIas~~aA~~YgL~il~~~I~--D~~~N~TRF~vl~r~~---------~~~~~-----------------------~~~~ 193 (279)
T COG0077 148 AIASELAAELYGLDILAENIE--DEPNNRTRFLVLSRRK---------PPSVS-----------------------DGPE 193 (279)
T ss_pred EEcCHHHHHHcCcHhHhhccc--CCCCCeEEEEEEeccC---------CCCcC-----------------------CCCc
Confidence 334455577778877665322 2345888888876310 00000 0224
Q ss_pred ccEEEEEecCCCCchhHHHhhhhcCCccccceEeeeec--CCCcEEEEEEcCCCCcH----HHHHHHhcCCC
Q 046427 521 GSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIA--PQKQAVMTIGVDEEPSR----EVLKKIGETPA 586 (595)
Q Consensus 521 ~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~--~g~~al~vi~~d~~~~~----e~l~~L~~~~~ 586 (595)
-..|++.-+|+||.+-++...|+.+|||...+.- |.. .-++.+..|+++....+ ++|++|++...
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIES-RP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~ 264 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIES-RPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITE 264 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEee-cccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhhee
Confidence 5677888889999999999999999999998876 322 33466778999887766 78888877654
No 443
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=92.28 E-value=0.19 Score=49.21 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=34.5
Q ss_pred EEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEc
Q 046427 525 LCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGV 569 (595)
Q Consensus 525 iv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~ 569 (595)
-+.-+||||+++.|++.|.++|+||.+.+..+-...-..+|+++.
T Consensus 12 TviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~ 56 (190)
T PRK11589 12 TALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG 56 (190)
T ss_pred EEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC
Confidence 345799999999999999999999999988764433334445533
No 444
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.26 E-value=1.2 Score=44.44 Aligned_cols=35 Identities=40% Similarity=0.496 Sum_probs=31.9
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
.|+++.|.|.|.+|+.+++.++..|.+|++.++..
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 57899999999999999999999999999998764
No 445
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.24 E-value=0.29 Score=51.91 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=46.3
Q ss_pred eecCCEEEEEeC-ChHHHHHHHHHhc--CCCEEEEECCCCcHHHHHH---c--CCccc---C---HHHhccccCEEEEeC
Q 046427 189 SLVGKTLAVMGF-GKVGTEVARRAKG--LGMNVIAHDPYAQADRARA---T--GVGLV---S---FEEAISTADFISLHM 254 (595)
Q Consensus 189 ~l~gktvGIIGl-G~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~---~--g~~~~---~---l~ell~~aD~V~l~~ 254 (595)
-++.++|+|+|. |.||+.+|..+.. ...++..+|.......+.+ . ..... + ..+.++.||+|++++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 356779999999 9999999999884 4468999997432211111 0 11111 1 267899999999877
Q ss_pred CC
Q 046427 255 PL 256 (595)
Q Consensus 255 Pl 256 (595)
-.
T Consensus 85 G~ 86 (321)
T PTZ00325 85 GV 86 (321)
T ss_pred CC
Confidence 53
No 446
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=92.09 E-value=0.54 Score=47.80 Aligned_cols=83 Identities=24% Similarity=0.305 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCCEEEEECCCCc---H---HHHHHcCCccc-CHHHhccccCEEEEeCCCChhccccccHHHHhcCCCce
Q 046427 204 GTEVARRAKGLGMNVIAHDPYAQ---A---DRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGV 276 (595)
Q Consensus 204 G~~vA~~l~~~G~~V~~~d~~~~---~---~~a~~~g~~~~-~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~~mk~ga 276 (595)
|..+|-.+...|..|+..||+.. . +...+.|++.+ +=.+..+.+.+.+|.+|.-..|-++. ++.+..++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 67788888899999999999763 2 23456788876 45688999999999999988787766 66888999999
Q ss_pred EEEeccCCchh
Q 046427 277 RIVNVARGGVV 287 (595)
Q Consensus 277 iliN~arg~~v 287 (595)
+|.|+..-+.+
T Consensus 112 VicnTCT~sp~ 122 (340)
T COG4007 112 VICNTCTVSPV 122 (340)
T ss_pred EecccccCchh
Confidence 99999875554
No 447
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.09 E-value=0.79 Score=48.55 Aligned_cols=104 Identities=19% Similarity=0.300 Sum_probs=68.2
Q ss_pred EEEEEeCChHHHHHHHHHhcC---CCEEEE-ECCCCc--HHHHHHcCC--c--ccCHHHhcccc--CEEEEeCCCChhcc
Q 046427 194 TLAVMGFGKVGTEVARRAKGL---GMNVIA-HDPYAQ--ADRARATGV--G--LVSFEEAISTA--DFISLHMPLTPATS 261 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~---G~~V~~-~d~~~~--~~~a~~~g~--~--~~~l~ell~~a--D~V~l~~Plt~~t~ 261 (595)
++||+|+|+|++..++.+... ++.|++ +||... .+.|...++ . +-+.++|++.. |+|.+..| +++-+
T Consensus 8 r~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~-~~qH~ 86 (351)
T KOG2741|consen 8 RWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTP-NPQHY 86 (351)
T ss_pred EEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCC-CccHH
Confidence 689999999999999998843 677665 577652 355666777 2 23899999876 99999998 44333
Q ss_pred ccccHHHHhcCCCceEEEeccCCchh-cHHHHHHHHhcCCe
Q 046427 262 KMFNDEAFFKMKKGVRIVNVARGGVV-DEEALVRALDSGII 301 (595)
Q Consensus 262 ~li~~~~l~~mk~gailiN~arg~~v-d~~aL~~aL~~g~i 301 (595)
.+. ...+. +.-.+|+.---.--+ +.+.+++|.+...+
T Consensus 87 evv-~l~l~--~~K~VL~EKPla~n~~e~~~iveaA~~rgv 124 (351)
T KOG2741|consen 87 EVV-MLALN--KGKHVLCEKPLAMNVAEAEEIVEAAEARGV 124 (351)
T ss_pred HHH-HHHHH--cCCcEEecccccCCHHHHHHHHHHHHHcCc
Confidence 333 22222 333466654332222 35567777777655
No 448
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.07 E-value=0.52 Score=45.43 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=27.7
Q ss_pred EEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA 225 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 225 (595)
+|+|||+|.+|..+|+.+...|. ++..+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999998887 588887653
No 449
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.04 E-value=0.28 Score=48.79 Aligned_cols=63 Identities=25% Similarity=0.301 Sum_probs=49.1
Q ss_pred EEEEeC-ChHHHHHHHHHhcCCCEEEEECCCCcH---HHHHHcCCccc--------CHHHhccccCEEEEeCCCC
Q 046427 195 LAVMGF-GKVGTEVARRAKGLGMNVIAHDPYAQA---DRARATGVGLV--------SFEEAISTADFISLHMPLT 257 (595)
Q Consensus 195 vGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~g~~~~--------~l~ell~~aD~V~l~~Plt 257 (595)
|.|+|. |.+|+.+++.|...+++|.+.-+..+. ......|++.+ +|.++++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 578886 999999999999999999988776532 23345676532 3778899999999999954
No 450
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=91.99 E-value=0.4 Score=50.54 Aligned_cols=63 Identities=13% Similarity=0.280 Sum_probs=43.5
Q ss_pred CEEEEEeC-ChHHHHHHHHHhcCCC--EEEEECCCCcHHHH--------H---HcCC--cc--c-CHHHhccccCEEEEe
Q 046427 193 KTLAVMGF-GKVGTEVARRAKGLGM--NVIAHDPYAQADRA--------R---ATGV--GL--V-SFEEAISTADFISLH 253 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a--------~---~~g~--~~--~-~l~ell~~aD~V~l~ 253 (595)
++|+|+|. |.+|..+|..+...|. +|+.+|+....+.+ . ..+. .. . +. +.+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 47999998 9999999999987775 69999984311111 0 1111 11 1 33 459999999999
Q ss_pred CCC
Q 046427 254 MPL 256 (595)
Q Consensus 254 ~Pl 256 (595)
...
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 863
No 451
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=91.96 E-value=0.34 Score=51.74 Aligned_cols=60 Identities=27% Similarity=0.431 Sum_probs=43.7
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH-H-HHHHcCC--cccC---HHHhccccCEEEEe
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-D-RARATGV--GLVS---FEEAISTADFISLH 253 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~-~a~~~g~--~~~~---l~ell~~aD~V~l~ 253 (595)
||||||-|..|+.+++.++.+|++|+++|++... . ...+..+ .+.+ +.++++.||+|+..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e 67 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE 67 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence 5899999999999999999999999999987521 1 1111111 1223 67788899998553
No 452
>PLN02602 lactate dehydrogenase
Probab=91.89 E-value=0.41 Score=51.39 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=43.0
Q ss_pred CEEEEEeCChHHHHHHHHHhcCC--CEEEEECCCCcHHHHHHc---------C-Ccc---cCHHHhccccCEEEEeCC
Q 046427 193 KTLAVMGFGKVGTEVARRAKGLG--MNVIAHDPYAQADRARAT---------G-VGL---VSFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~---------g-~~~---~~l~ell~~aD~V~l~~P 255 (595)
++|+|||.|.+|..+|-.+...+ -++..+|.+........+ + ... .+. +.+++||+|+++.-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCC
Confidence 69999999999999999988655 479999976532111111 1 111 133 44899999999854
No 453
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=91.88 E-value=1.5 Score=40.29 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=28.6
Q ss_pred EEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA 225 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 225 (595)
+|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999997 789998763
No 454
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.86 E-value=0.79 Score=47.74 Aligned_cols=68 Identities=24% Similarity=0.229 Sum_probs=46.8
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCCcH--HHHHHc----CC---cccC---HHHhccccCEEEEeCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYAQA--DRARAT----GV---GLVS---FEEAISTADFISLHMP 255 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~----g~---~~~~---l~ell~~aD~V~l~~P 255 (595)
.+.||++.|+|.|-.|++++-.|...|+ +|.++||+... ..+... +. ...+ +++.+..+|+|+-++|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence 3568999999999999999999999997 78899987532 111111 11 1112 2345667888888877
Q ss_pred C
Q 046427 256 L 256 (595)
Q Consensus 256 l 256 (595)
.
T Consensus 204 ~ 204 (283)
T PRK14027 204 M 204 (283)
T ss_pred C
Confidence 4
No 455
>PRK06392 homoserine dehydrogenase; Provisional
Probab=91.76 E-value=0.86 Score=48.48 Aligned_cols=105 Identities=18% Similarity=0.365 Sum_probs=62.4
Q ss_pred EEEEEeCChHHHHHHHHHhc--------CCCEEEE-ECCCC--------cHHHH---HHcC----C--cccCHHHhc-cc
Q 046427 194 TLAVMGFGKVGTEVARRAKG--------LGMNVIA-HDPYA--------QADRA---RATG----V--GLVSFEEAI-ST 246 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~--------~G~~V~~-~d~~~--------~~~~a---~~~g----~--~~~~l~ell-~~ 246 (595)
+|+|+|+|.+|+.+++.+.. ++.+|.+ +|+.. ..+.. .+.| . ...++++++ .+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 79999999999999999875 5677665 34331 11111 1111 1 112456654 46
Q ss_pred cCEEEEeCCCChhccccccHHHHhcCCCceEEEeccCCchh-cHHHHHHHHhcC
Q 046427 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV-DEEALVRALDSG 299 (595)
Q Consensus 247 aD~V~l~~Plt~~t~~li~~~~l~~mk~gailiN~arg~~v-d~~aL~~aL~~g 299 (595)
+|+|+=|+|... +-.-.-.-....|+.|.-+|-+..|.+. ..+.|.++.+++
T Consensus 82 ~DVvVE~t~~~~-~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~ 134 (326)
T PRK06392 82 PDVIVDVTPASK-DGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKN 134 (326)
T ss_pred CCEEEECCCCCC-cCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHc
Confidence 899999998432 1100111123446788888888887776 356666665554
No 456
>PRK11899 prephenate dehydratase; Provisional
Probab=91.67 E-value=0.84 Score=47.45 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=71.1
Q ss_pred ccHHHHHhhCCceEEEEEeecCCCCCCCceEEEEEeeeccccccccccCCceEEEEEEEeCCeeEEEEEcceEEEeecCc
Q 046427 442 VNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLEG 521 (595)
Q Consensus 442 ~nA~~iA~e~GI~v~f~~~~~~~~hpnt~~~~~~~~~~~~~~~g~sig~~~~~~v~GSvgGG~i~I~~Idgf~v~~~~~~ 521 (595)
+-+...|+..|+++-..... +...|+.+++.+..+... .. . + -..+-
T Consensus 148 Ias~~aa~~YgL~il~~~Iq--D~~~N~TRF~vi~~~~~~------~~-~----------~--------------~~~~k 194 (279)
T PRK11899 148 LASRLAAELYGLDILAENIE--DADHNTTRFVVLSREADW------AA-R----------G--------------DGPIV 194 (279)
T ss_pred eCCHHHHHHcCCcchhhccc--CCcccceeEEEEecCCCC------CC-C----------C--------------CCCce
Confidence 33445677778888664332 234588888887643100 00 0 0 00123
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeee-cCCCcEEEEEEcCCCCc-H---HHHHHHhcCC
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRI-APQKQAVMTIGVDEEPS-R---EVLKKIGETP 585 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~-~~g~~al~vi~~d~~~~-~---e~l~~L~~~~ 585 (595)
..+++..+|+||.+.++.+.++++|||+..++--.. ..-++.+..|+++.... + ++|++|++..
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~ 263 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFS 263 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhc
Confidence 567777789999999999999999999999886322 23345677788888643 3 4666776643
No 457
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.58 E-value=0.41 Score=50.20 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=45.7
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCCCEEEEECCCCcH-HHHHHcCCccc--------CHHHhccccCEEEEeCC
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGLV--------SFEEAISTADFISLHMP 255 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~--------~l~ell~~aD~V~l~~P 255 (595)
++|.|.| .|.||+.+++.|...|++|.+.++.... ......+++.+ ++.++++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 3788998 5999999999999999999999876422 11123354321 36778899999876543
No 458
>PRK07411 hypothetical protein; Validated
Probab=91.58 E-value=0.23 Score=54.16 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=31.7
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|+..+|.|||+|-+|..+|+.|...|. ++..+|..
T Consensus 35 ~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 35 RLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5899999999999999999999998886 67777754
No 459
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=91.54 E-value=0.44 Score=55.65 Aligned_cols=69 Identities=9% Similarity=0.174 Sum_probs=53.4
Q ss_pred EEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEE--EEcCCCCcH-HHHHHHhcCCCcceEEEE
Q 046427 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMT--IGVDEEPSR-EVLKKIGETPAIEEFVFL 593 (595)
Q Consensus 524 Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~v--i~~d~~~~~-e~l~~L~~~~~v~~v~~i 593 (595)
|.+...|++|+++.|++.+++.++||.+++... .+++.+.+. |++.+.-.- .++.+|+++++|.+|+-+
T Consensus 629 i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 629 IKVEMFNHQGALANLTAAINTTGSNIQSLNTEE-KDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN 700 (702)
T ss_pred EEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEE-cCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceEEEc
Confidence 456789999999999999999999999999743 334455444 555554222 899999999999998643
No 460
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.52 E-value=0.62 Score=49.87 Aligned_cols=45 Identities=24% Similarity=0.443 Sum_probs=35.2
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc--HHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ--ADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~g~ 235 (595)
.|++|.|.|.|.+|...++.++.+|.+|++.+.... .+.+++.|+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga 229 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA 229 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC
Confidence 578999999999999999999999999988765442 223345554
No 461
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=91.48 E-value=0.53 Score=38.63 Aligned_cols=61 Identities=7% Similarity=0.174 Sum_probs=42.9
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeee-cCCCcEEEEEEcCCCCcH--HHHHHHhc
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRI-APQKQAVMTIGVDEEPSR--EVLKKIGE 583 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~-~~g~~al~vi~~d~~~~~--e~l~~L~~ 583 (595)
.+++.-+|+||.+..+.+.++++|||+..++--.. ....+....|+++..... +++++|++
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 45666688999999999999999999999886322 223356666888863222 45555554
No 462
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=91.45 E-value=1 Score=49.93 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=71.6
Q ss_pred ecCCEEEEEeC----ChHHHHHHHHHhcCCC--EEEEECCCCcHHHHHHcCCcc-cCHHHhccccCEEEEeCCCChhccc
Q 046427 190 LVGKTLAVMGF----GKVGTEVARRAKGLGM--NVIAHDPYAQADRARATGVGL-VSFEEAISTADFISLHMPLTPATSK 262 (595)
Q Consensus 190 l~gktvGIIGl----G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aD~V~l~~Plt~~t~~ 262 (595)
++=++|.|||. |++|..+.+.++..|+ +|+..+|... .-.|+.. .+++++-...|++++++| .+.+..
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~----~i~G~~~~~sl~~lp~~~Dlavi~vp-~~~~~~ 79 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG----EILGVKAYPSVLEIPDPVDLAVIVVP-AKYVPQ 79 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC----ccCCccccCCHHHCCCCCCEEEEecC-HHHHHH
Confidence 55689999999 8899999999998887 7888888643 2245554 379999888999999999 444555
Q ss_pred cccHHHHhcCCCceE-EEeccCC-----chhcHHHHHHHHhcCCee
Q 046427 263 MFNDEAFFKMKKGVR-IVNVARG-----GVVDEEALVRALDSGIIS 302 (595)
Q Consensus 263 li~~~~l~~mk~gai-liN~arg-----~~vd~~aL~~aL~~g~i~ 302 (595)
.+.+ ..+ .+-.++ ++.-+-+ +...++++.+..+.+.+.
T Consensus 80 ~l~e-~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 80 VVEE-CGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR 123 (447)
T ss_pred HHHH-HHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE
Confidence 5543 222 333344 4432211 223456777777766543
No 463
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=91.44 E-value=0.54 Score=49.96 Aligned_cols=30 Identities=33% Similarity=0.634 Sum_probs=24.6
Q ss_pred EEEEEeCChHHHHHHHHHhcC----CCEEEEECC
Q 046427 194 TLAVMGFGKVGTEVARRAKGL----GMNVIAHDP 223 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~----G~~V~~~d~ 223 (595)
+|||+|+|+||+.+.+.+... +++|...+.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 489999999999999998754 378887654
No 464
>PRK06382 threonine dehydratase; Provisional
Probab=91.04 E-value=0.34 Score=53.10 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=50.2
Q ss_pred eecCccEEEEEecCCCCchhHHHhhhhcCCccccceEeee---ecCCCcEEEEEEcCCC--C-cHHHHHHHhcC
Q 046427 517 VSLEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGR---IAPQKQAVMTIGVDEE--P-SREVLKKIGET 584 (595)
Q Consensus 517 ~~~~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r---~~~g~~al~vi~~d~~--~-~~e~l~~L~~~ 584 (595)
..+....+.+..+|+||.+.+++++++++++||..+...| ....+.+...+.++.. - ..+++++|++.
T Consensus 326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREM 399 (406)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 3455566777899999999999999999999999888764 2233456666666663 3 33788888764
No 465
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=90.86 E-value=0.35 Score=51.85 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=52.1
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCCC---EEEEE--CCCCcHHHHHHcCC--cc--cCHHHhccccCEEEEeCCCChhc
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLGM---NVIAH--DPYAQADRARATGV--GL--VSFEEAISTADFISLHMPLTPAT 260 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G~---~V~~~--d~~~~~~~a~~~g~--~~--~~l~ell~~aD~V~l~~Plt~~t 260 (595)
...+|+|+|. |.+|+.+.+.|...++ ++... .++.... ....+. .. .+. +.+.++|+|++|+|. ...
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~-~~~~~~~~~v~~~~~-~~~~~~D~vf~a~p~-~~s 82 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKK-VTFEGRDYTVEELTE-DSFDGVDIALFSAGG-SIS 82 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCe-eeecCceeEEEeCCH-HHHcCCCEEEECCCc-HHH
Confidence 3468999997 9999999999987543 34333 2222111 111121 11 233 445899999999994 334
Q ss_pred cccccHHHHhcCCCceEEEecc
Q 046427 261 SKMFNDEAFFKMKKGVRIVNVA 282 (595)
Q Consensus 261 ~~li~~~~l~~mk~gailiN~a 282 (595)
..+..+ ..+.|+.+||.|
T Consensus 83 ~~~~~~----~~~~g~~VIDlS 100 (344)
T PLN02383 83 KKFGPI----AVDKGAVVVDNS 100 (344)
T ss_pred HHHHHH----HHhCCCEEEECC
Confidence 444321 135799999998
No 466
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=90.84 E-value=0.75 Score=41.97 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=55.2
Q ss_pred cEEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEcCCC-Cc---HHHHHHHhcCCCcceEEEEe
Q 046427 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE-PS---REVLKKIGETPAIEEFVFLK 594 (595)
Q Consensus 522 ~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~d~~-~~---~e~l~~L~~~~~v~~v~~i~ 594 (595)
.+|.+.-.|+-|+++.+...+++.++||-.++-.-.-. |.|-..+.+|-. .+ ++++++|+++++|..|..+-
T Consensus 73 ~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~-g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivg 148 (150)
T COG4492 73 ITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQ-GRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVG 148 (150)
T ss_pred EEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccC-ceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEee
Confidence 56778889999999999999999999999988764333 345444444432 22 28899999999999998763
No 467
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.84 E-value=0.62 Score=49.46 Aligned_cols=45 Identities=29% Similarity=0.439 Sum_probs=36.1
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 235 (595)
.|.+|.|.|.|.+|...++.++..|.+|++.+... ..+.+++.|+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA 211 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence 47899999999999999999999999999988765 3344444443
No 468
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.65 E-value=1.1 Score=47.56 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=29.4
Q ss_pred cCCEEEEEeCChHHHHHHHHHhc-CC-CEEEEECCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKG-LG-MNVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~ 225 (595)
.|.+|.|+|.|.||...++.++. +| .+|++.|+..
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~ 199 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQ 199 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcH
Confidence 47899999999999998888875 54 6899998765
No 469
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.65 E-value=0.43 Score=50.69 Aligned_cols=63 Identities=16% Similarity=0.063 Sum_probs=43.5
Q ss_pred EEEEEeC-ChHHHHHHHHHhcCC-------CEEEEECCCCcHH--HHHHc-----------CCc-ccCHHHhccccCEEE
Q 046427 194 TLAVMGF-GKVGTEVARRAKGLG-------MNVIAHDPYAQAD--RARAT-----------GVG-LVSFEEAISTADFIS 251 (595)
Q Consensus 194 tvGIIGl-G~IG~~vA~~l~~~G-------~~V~~~d~~~~~~--~a~~~-----------g~~-~~~l~ell~~aD~V~ 251 (595)
+|+|+|. |.+|+.+|..|...+ .++..+|.....+ ..... .+. ..++.+.+++||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 6999999 999999999987644 4899999744211 11111 111 235678899999998
Q ss_pred EeCCC
Q 046427 252 LHMPL 256 (595)
Q Consensus 252 l~~Pl 256 (595)
.+.-.
T Consensus 84 ~tAG~ 88 (325)
T cd01336 84 LVGAM 88 (325)
T ss_pred EeCCc
Confidence 87654
No 470
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=90.64 E-value=0.61 Score=50.79 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=50.8
Q ss_pred ecCCEEEEEeCCh----------HHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCccc-CHHHhccccCEEEEeC
Q 046427 190 LVGKTLAVMGFGK----------VGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV-SFEEAISTADFISLHM 254 (595)
Q Consensus 190 l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aD~V~l~~ 254 (595)
..|++|+|+|+.- -...+++.|...|.+|.+|||...... ..++.+. ++.+++++||.|++..
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 367 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS--FFNSRLERDLATFKQQADVIISNR 367 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh--hcCCeeeCCHHHHHHhCCEEEEcC
Confidence 3689999999943 566899999999999999999864332 3466554 7999999999999865
No 471
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=90.58 E-value=4.2 Score=42.80 Aligned_cols=65 Identities=26% Similarity=0.227 Sum_probs=46.8
Q ss_pred eecCCEEEEEeCC-hHHHHHHHHHhcCCCEEEEECCCC--c-HH-------HHHHcCCcc---cCHHHhccccCEEEEeC
Q 046427 189 SLVGKTLAVMGFG-KVGTEVARRAKGLGMNVIAHDPYA--Q-AD-------RARATGVGL---VSFEEAISTADFISLHM 254 (595)
Q Consensus 189 ~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~--~-~~-------~a~~~g~~~---~~l~ell~~aD~V~l~~ 254 (595)
.+.|++|++||=+ ++.++.+..+..||++|....|.. . .+ .+++.|... .++ +.+++||+|..-.
T Consensus 144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~ 222 (302)
T PRK14805 144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT 222 (302)
T ss_pred CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence 3789999999984 577888888999999999987743 1 11 123345542 354 5789999998833
No 472
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.58 E-value=0.71 Score=53.70 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=32.7
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCC
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY 224 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 224 (595)
-.|++|.|||.|..|.+.|..|...|++|++||+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 46899999999999999999999999999999864
No 473
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.51 E-value=0.65 Score=39.15 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=41.3
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeec-CCCcEEEEEEcCC--CCcHHHHHHHhc
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIA-PQKQAVMTIGVDE--EPSREVLKKIGE 583 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~-~g~~al~vi~~d~--~~~~e~l~~L~~ 583 (595)
.+.+.-+|+||.+.++.+.|+ +.||..+.-.|.. ......+++++++ .--+++++.|++
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 355678999999999999999 4556566555533 3444566678877 334578888876
No 474
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=90.45 E-value=0.4 Score=52.39 Aligned_cols=35 Identities=34% Similarity=0.676 Sum_probs=29.2
Q ss_pred CEEEEEeCChHHHHHHHHHhc-CCCEEEE-ECCCCcH
Q 046427 193 KTLAVMGFGKVGTEVARRAKG-LGMNVIA-HDPYAQA 227 (595)
Q Consensus 193 ktvGIIGlG~IG~~vA~~l~~-~G~~V~~-~d~~~~~ 227 (595)
.+|||.|||+||+.++|.+.. ++++|++ +||....
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~ 122 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDA 122 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCH
Confidence 489999999999999999874 8999888 6665533
No 475
>PLN00106 malate dehydrogenase
Probab=90.39 E-value=0.55 Score=49.87 Aligned_cols=65 Identities=20% Similarity=0.165 Sum_probs=45.0
Q ss_pred cCCEEEEEeC-ChHHHHHHHHHhcCC--CEEEEECCCCcHHHHHHc-------CCc----ccCHHHhccccCEEEEeCC
Q 046427 191 VGKTLAVMGF-GKVGTEVARRAKGLG--MNVIAHDPYAQADRARAT-------GVG----LVSFEEAISTADFISLHMP 255 (595)
Q Consensus 191 ~gktvGIIGl-G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~-------g~~----~~~l~ell~~aD~V~l~~P 255 (595)
..++|+|+|. |++|+.+|..+...+ -++..+|.......+.++ .+. ..++.+.+++||+|+++.-
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 3469999999 999999999988444 489999976521111110 111 1135789999999999765
No 476
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=90.36 E-value=0.34 Score=52.78 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=31.5
Q ss_pred eecCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCC
Q 046427 189 SLVGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY 224 (595)
Q Consensus 189 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 224 (595)
.|.+++|.|||+|-+|..+|+.|...|. ++..+|..
T Consensus 39 ~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 39 RLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 4889999999999999999999998886 67777753
No 477
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.35 E-value=0.29 Score=44.83 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=29.7
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 225 (595)
+.++|.|+|+|.+|..+|+.|...|+ ++..+|+..
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 35799999999999999999998887 788888653
No 478
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.23 E-value=1.3 Score=46.31 Aligned_cols=103 Identities=20% Similarity=0.184 Sum_probs=67.5
Q ss_pred CCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccC-HHHhccccCEEEEeCCCChhccc--------
Q 046427 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVS-FEEAISTADFISLHMPLTPATSK-------- 262 (595)
Q Consensus 192 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~-l~ell~~aD~V~l~~Plt~~t~~-------- 262 (595)
|++++|||--.--..+++.|...|++|..|.-...... -.|+...+ .++.++++|+|++-+|.+.+...
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDG--FTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccc--cccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence 68999999999999999999999999777643211010 11555444 44559999999999997664321
Q ss_pred --cccHHHHhcCCCceEEEeccCCchhcHHHHHHHHhcCCe
Q 046427 263 --MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301 (595)
Q Consensus 263 --li~~~~l~~mk~gailiN~arg~~vd~~aL~~aL~~g~i 301 (595)
-++++.++.|+++++ +-++. +..++-++.++..+
T Consensus 79 ~~~l~~~~l~~~~~~~~-~~~G~----~~~~l~~~a~~~gi 114 (287)
T TIGR02853 79 KVVLTPELLESTKGHCT-IYVGI----SNPYLEQLAADAGV 114 (287)
T ss_pred CccccHHHHHhcCCCCE-EEEec----CCHHHHHHHHHCCC
Confidence 145778888887654 33333 33334435555555
No 479
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=90.18 E-value=1.3 Score=46.69 Aligned_cols=45 Identities=31% Similarity=0.460 Sum_probs=35.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 235 (595)
.|.++.|.|.|.+|+.+++.++.+|.+|++.++.. ..+.+.+.|+
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~ 214 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGA 214 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCC
Confidence 46789999999999999999999999999988764 3333444443
No 480
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.17 E-value=0.92 Score=47.66 Aligned_cols=45 Identities=36% Similarity=0.477 Sum_probs=36.0
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCE-EEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMN-VIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~g~ 235 (595)
.|.++.|+|.|.+|...++.++.+|.+ |++.++.. ..+.+++.|+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga 209 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA 209 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 388999999999999999999999998 99988754 2334445553
No 481
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.16 E-value=1.7 Score=51.85 Aligned_cols=107 Identities=13% Similarity=0.219 Sum_probs=68.6
Q ss_pred CEEEEEeCChHHHHH-HHHHhcCCCEEEEECCCCcH--HHHHHcCCccc--CHHHhccccCEEEEeCCCChhcc------
Q 046427 193 KTLAVMGFGKVGTEV-ARRAKGLGMNVIAHDPYAQA--DRARATGVGLV--SFEEAISTADFISLHMPLTPATS------ 261 (595)
Q Consensus 193 ktvGIIGlG~IG~~v-A~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~--~l~ell~~aD~V~l~~Plt~~t~------ 261 (595)
+++.|+|+|..|.+. |+.|+..|++|.++|..... ....+.|+... .-.+.+..+|+|+..--..+.+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~ 84 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK 84 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence 368999999999998 99999999999999975432 22345576542 23466778999987543332222
Q ss_pred ----ccccHHHH-hc-CCC-ceEEEeccCCchhcHHHHHHHHhcC
Q 046427 262 ----KMFNDEAF-FK-MKK-GVRIVNVARGGVVDEEALVRALDSG 299 (595)
Q Consensus 262 ----~li~~~~l-~~-mk~-gailiN~arg~~vd~~aL~~aL~~g 299 (595)
.++.+.++ .. ++. ..+-|--+.|+.-...-+...|+..
T Consensus 85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~ 129 (809)
T PRK14573 85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA 129 (809)
T ss_pred HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 22333333 22 332 3455555578886666666677653
No 482
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.13 E-value=0.39 Score=50.95 Aligned_cols=64 Identities=19% Similarity=0.105 Sum_probs=43.9
Q ss_pred CEEEEEeC-ChHHHHHHHHHhcCCC-------EEEEECCCCcHH--H--HHH--c-------CCcc-cCHHHhccccCEE
Q 046427 193 KTLAVMGF-GKVGTEVARRAKGLGM-------NVIAHDPYAQAD--R--ARA--T-------GVGL-VSFEEAISTADFI 250 (595)
Q Consensus 193 ktvGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~~--~--a~~--~-------g~~~-~~l~ell~~aD~V 250 (595)
++|+|||. |.+|..+|..+...|. ++..+|.....+ . +.+ . .+.. .+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 48999999 9999999998886554 789999743211 1 110 0 1111 2456889999999
Q ss_pred EEeCCC
Q 046427 251 SLHMPL 256 (595)
Q Consensus 251 ~l~~Pl 256 (595)
+++.-.
T Consensus 83 vitaG~ 88 (322)
T cd01338 83 LLVGAK 88 (322)
T ss_pred EEeCCC
Confidence 998753
No 483
>PRK13529 malate dehydrogenase; Provisional
Probab=90.12 E-value=12 Score=42.43 Aligned_cols=213 Identities=15% Similarity=0.170 Sum_probs=125.3
Q ss_pred EEEEccccccc-cChhhHHhCCceEEeCCCCCchHHHHHHHHHHHHHHHchHHHHHHHHcCcccccccceeeecCCEEEE
Q 046427 119 VVGRAGVGIDN-VDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAV 197 (595)
Q Consensus 119 ~I~~~g~G~d~-iD~~aa~~~gI~V~n~p~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGI 197 (595)
+|+.-=.+..| +.+..--+..|.+.|+- -..+|--++|-+|+..| ..|..|...++.|
T Consensus 242 ~I~~EDf~~~~af~iL~ryr~~i~~FnDD---iQGTaaV~LAgll~A~r------------------~~g~~l~d~riv~ 300 (563)
T PRK13529 242 LLQFEDFAQKNARRILERYRDEICTFNDD---IQGTGAVTLAGLLAALK------------------ITGEPLSDQRIVF 300 (563)
T ss_pred EEehhhcCCchHHHHHHHhccCCCeeccc---cchHHHHHHHHHHHHHH------------------HhCCChhhcEEEE
Confidence 44444333333 44444455678888874 33456677888888877 2355788899999
Q ss_pred EeCChHHHHHHHHHhc----CCC-------EEEEECCCC----c---H-----HHHHHcC-C-------cccCHHHhccc
Q 046427 198 MGFGKVGTEVARRAKG----LGM-------NVIAHDPYA----Q---A-----DRARATG-V-------GLVSFEEAIST 246 (595)
Q Consensus 198 IGlG~IG~~vA~~l~~----~G~-------~V~~~d~~~----~---~-----~~a~~~g-~-------~~~~l~ell~~ 246 (595)
+|.|.-|-.+|+.+.. .|+ +++.+|..- . . ..++... . ...+|.|+++.
T Consensus 301 ~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~ 380 (563)
T PRK13529 301 LGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRN 380 (563)
T ss_pred ECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhc
Confidence 9999999999999875 577 788888642 0 0 1122111 0 11479999999
Q ss_pred c--CEEEEeCCCChhccccccHHHHhcCCC---ceEEEeccCCch---hcHHHHHHHHhcCCeeEEEEecCCCCCCCCCc
Q 046427 247 A--DFISLHMPLTPATSKMFNDEAFFKMKK---GVRIVNVARGGV---VDEEALVRALDSGIISQAALDVFTEEPPAKDS 318 (595)
Q Consensus 247 a--D~V~l~~Plt~~t~~li~~~~l~~mk~---gailiN~arg~~---vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~ 318 (595)
+ |+++=+- ..-+.+.++.++.|.+ ..+|.=.|.-.. +..++.+++-+...|.+.|.-.-..+--....
T Consensus 381 ~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~ 456 (563)
T PRK13529 381 VKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTY 456 (563)
T ss_pred cCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEe
Confidence 8 9887643 2347899999999987 789888886443 13444455544445655554211000000001
Q ss_pred ccccCCcEEEcCCCCCCcHH-----HHHHHHHHHHHHHHHHHc
Q 046427 319 KLVLHENVTVTPHLGASTTE-----AQEGVAIEIAEAVIGALK 356 (595)
Q Consensus 319 ~L~~~~nvilTPHi~~~t~e-----a~~~~~~~~~~~l~~~l~ 356 (595)
.-=+.-|+++-|-++-.... --+.|-..+|+.|.++..
T Consensus 457 ~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~ 499 (563)
T PRK13529 457 PIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVP 499 (563)
T ss_pred ccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCc
Confidence 11134578888876632111 113344445555555543
No 484
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.11 E-value=1.2 Score=36.96 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=42.9
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEEEEc---CC-CC-cHHHHHHHhc
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGV---DE-EP-SREVLKKIGE 583 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~vi~~---d~-~~-~~e~l~~L~~ 583 (595)
.+=+..+|+||.+..|+..|.+.+++|..-+++ ..|+.+.=++-+ +. ++ +++.+++|++
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~FyV~d~~g~kl~~~~~~~~l~~ 66 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQEYYIRHKDGRTLSTEGERQRVIK 66 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEEEEEEcCCCCccCCHHHHHHHHH
Confidence 455778999999999999999999999988885 456666555444 32 34 3455566643
No 485
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.11 E-value=2 Score=47.32 Aligned_cols=109 Identities=18% Similarity=0.206 Sum_probs=64.8
Q ss_pred ecC-CEEEEEeCChHHHHHHHHHhcC--CCEEEEECCCCcHH--HHHHcCCccc-C--HHHhccccCEEEEeCCCChhcc
Q 046427 190 LVG-KTLAVMGFGKVGTEVARRAKGL--GMNVIAHDPYAQAD--RARATGVGLV-S--FEEAISTADFISLHMPLTPATS 261 (595)
Q Consensus 190 l~g-ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~--~a~~~g~~~~-~--l~ell~~aD~V~l~~Plt~~t~ 261 (595)
+.+ |++.|+|+|..|.+.++.+... |++|.++|...... ...+.|++.. . -.+.+.++|+|+..--..+...
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p 83 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPGIALATP 83 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCCCCCCCH
Confidence 345 7899999999999999999866 58999999654211 1112266542 1 2244578998877542222111
Q ss_pred ----------ccccHHHH--hcCCCceEEEeccCCchhcHHHHHHHHhc
Q 046427 262 ----------KMFNDEAF--FKMKKGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 262 ----------~li~~~~l--~~mk~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.++.+.++ ..++.-.+-|--+-|+.-...-+...|+.
T Consensus 84 ~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 84 EIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 12332222 23443445555557887666666666654
No 486
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.03 E-value=1.9 Score=47.75 Aligned_cols=105 Identities=16% Similarity=0.243 Sum_probs=65.7
Q ss_pred EEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcH------HHHHHcCCccc---CHH-----HhccccCEEEEeCCCChh
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA------DRARATGVGLV---SFE-----EAISTADFISLHMPLTPA 259 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~g~~~~---~l~-----ell~~aD~V~l~~Plt~~ 259 (595)
+|.|||+|..|.+.|+.|...|.+|.++|..... ....+.|++.. ..+ +.+.+.|.|+......+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 5899999999999999999999999999975422 11234566441 122 467889998884443332
Q ss_pred ccc----------cccHHHH--hcCCC-ceEEEeccCCchhcHHHHHHHHhc
Q 046427 260 TSK----------MFNDEAF--FKMKK-GVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 260 t~~----------li~~~~l--~~mk~-gailiN~arg~~vd~~aL~~aL~~ 298 (595)
... ++....+ ..+++ ..+-|--+.|+.-...-+.+.|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 111 2232222 23333 345555557887666666666654
No 487
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=90.01 E-value=0.87 Score=49.17 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=35.6
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCc--HHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ--ADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~g~ 235 (595)
.|++|.|.|.|.+|...++.++.+|.+|++.+.... .+.++++|+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa 224 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGA 224 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCC
Confidence 578999999999999999999999999999876532 233444453
No 488
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.97 E-value=0.83 Score=53.04 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=33.0
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCC
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 225 (595)
..||+|.|||-|..|...|..|+..|++|++|++..
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 469999999999999999999999999999998654
No 489
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.95 E-value=0.57 Score=49.38 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=42.7
Q ss_pred EEEEEeCChHHHHHHHHHhcCCC--EEEEECCCCcHHH--HHHc----C------Ccc-cCHHHhccccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTEVARRAKGLGM--NVIAHDPYAQADR--ARAT----G------VGL-VSFEEAISTADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~~~----g------~~~-~~l~ell~~aD~V~l~~Pl 256 (595)
+|+|||.|.+|..+|..+...+. ++..+|.+..... +.++ . +.. .+-.+.+++||+|+++.-.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 58999999999999998875553 7999998653221 1111 1 111 1234789999999997653
No 490
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=89.93 E-value=0.3 Score=45.83 Aligned_cols=84 Identities=15% Similarity=0.172 Sum_probs=51.5
Q ss_pred ecCCEEEEEeCChHHHHHHHHHhcCCCEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhcccccc---H
Q 046427 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFN---D 266 (595)
Q Consensus 190 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~---~ 266 (595)
..|++|++||+= +.++++++..+.++.++|.++........++.....++++++||+|++.-- -++| .
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs------TlvN~Ti~ 79 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS------TLVNGTID 79 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH------HCCTTTHH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee------eeecCCHH
Confidence 468999999961 137888888899999999876332111222233357899999999988431 1233 3
Q ss_pred HHHhcCCCceEEEecc
Q 046427 267 EAFFKMKKGVRIVNVA 282 (595)
Q Consensus 267 ~~l~~mk~gailiN~a 282 (595)
..++..+++..++=.|
T Consensus 80 ~iL~~~~~~~~vil~G 95 (147)
T PF04016_consen 80 DILELARNAREVILYG 95 (147)
T ss_dssp HHHHHTTTSSEEEEES
T ss_pred HHHHhCccCCeEEEEe
Confidence 3455566565555554
No 491
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=89.90 E-value=0.65 Score=49.08 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=51.6
Q ss_pred CEEEEEe-CChHHHHHHHHHhcCC-CEEEEECCCCcHHHHHHcCCcccCHHHhccccCEEEEeCCCChhccccccHHHHh
Q 046427 193 KTLAVMG-FGKVGTEVARRAKGLG-MNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFF 270 (595)
Q Consensus 193 ktvGIIG-lG~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aD~V~l~~Plt~~t~~li~~~~l~ 270 (595)
.+|+||| .|..|+.+.+.|.... +++.......... ..+.+++++++|++++|+|. .....+..+ +
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~--------~~~~~~~~~~~DvvFlalp~-~~s~~~~~~--~- 70 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD--------AAARRELLNAADVAILCLPD-DAAREAVAL--I- 70 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc--------ccCchhhhcCCCEEEECCCH-HHHHHHHHH--H-
Confidence 4799999 5999999999999765 4655543222110 12345677889999999994 334433322 2
Q ss_pred cCCCceEEEecc
Q 046427 271 KMKKGVRIVNVA 282 (595)
Q Consensus 271 ~mk~gailiN~a 282 (595)
.+.|+.+||.|
T Consensus 71 -~~~g~~VIDlS 81 (313)
T PRK11863 71 -DNPATRVIDAS 81 (313)
T ss_pred -HhCCCEEEECC
Confidence 35688999987
No 492
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=89.88 E-value=1.1 Score=46.65 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=29.3
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCCE-EEEECCCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGMN-VIAHDPYA 225 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~ 225 (595)
.|+++.|+|.|.||...++.++.+|.+ |++.|...
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~ 179 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNP 179 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 467899999999999999999999997 55566543
No 493
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.78 E-value=0.9 Score=37.51 Aligned_cols=61 Identities=11% Similarity=0.200 Sum_probs=43.3
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeee-cCCCcEEEEEEcCCCCcH--HHHHHHhc
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRI-APQKQAVMTIGVDEEPSR--EVLKKIGE 583 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~-~~g~~al~vi~~d~~~~~--e~l~~L~~ 583 (595)
.+++.-+|+||.+..+.+.+++++||+..++--.. ....+-...|+++..... .++++|++
T Consensus 2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 35666678999999999999999999999886321 222345666777765543 55566554
No 494
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=89.78 E-value=0.89 Score=48.73 Aligned_cols=45 Identities=33% Similarity=0.449 Sum_probs=36.8
Q ss_pred cCCEEEEEeCChHHHHHHHHHhcCCC-EEEEECCCC-cHHHHHHcCC
Q 046427 191 VGKTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPYA-QADRARATGV 235 (595)
Q Consensus 191 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~ 235 (595)
.|.+|.|.|.|.+|...++.++..|. +|++.|... ..+.++++|+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga 237 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA 237 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence 47899999999999999999999999 699988765 3445566665
No 495
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=89.64 E-value=0.4 Score=45.75 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=33.0
Q ss_pred cCccEEEEEecCCCCchhHHHhhhhcCCccccceEeee
Q 046427 519 LEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGR 556 (595)
Q Consensus 519 ~~~~~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r 556 (595)
+.-+.+.+...||||++.+++.+|.++||||.++..-+
T Consensus 90 ~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~ 127 (176)
T COG2716 90 PAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRT 127 (176)
T ss_pred CceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeee
Confidence 33456667789999999999999999999999999865
No 496
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=89.62 E-value=0.82 Score=53.42 Aligned_cols=68 Identities=15% Similarity=0.277 Sum_probs=52.5
Q ss_pred EEEEEecCCCCchhHHHhhhhcCCccccceEeeeecCCCcEEEE--EEcCCCCcH-HHHHHHhcCCCcceEE
Q 046427 523 IILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMT--IGVDEEPSR-EVLKKIGETPAIEEFV 591 (595)
Q Consensus 523 ~Liv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g~~al~v--i~~d~~~~~-e~l~~L~~~~~v~~v~ 591 (595)
.|.+...|++|+++.|++.|+++++||.+++.... .++.+.+. |++.+...- .++.+|+++++|.+|+
T Consensus 612 ~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~~~~L~~ii~~L~~i~~V~~v~ 682 (683)
T TIGR00691 612 DINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKNYKHLLKIMLKIKTKNDVIVVK 682 (683)
T ss_pred EEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECCHHHHHHHHHHHhCCCCceEEe
Confidence 35567899999999999999999999999998543 34455544 455543322 8999999999998875
No 497
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.59 E-value=0.78 Score=36.84 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=42.0
Q ss_pred EEEecCCCCchhHHHhhhhcCCccccceEeeeecCC-CcEEEEEEcCCC-CcHHHHHHHhc
Q 046427 525 LCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQ-KQAVMTIGVDEE-PSREVLKKIGE 583 (595)
Q Consensus 525 iv~~~D~pG~I~~I~~~L~~~~INIa~m~v~r~~~g-~~al~vi~~d~~-~~~e~l~~L~~ 583 (595)
-+.-+|+||.+.++.++|++ +.||..++-.|...+ ..-.+.+++.++ --++++++|++
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 35678999999999999999 999999988765422 223445677663 23377777765
No 498
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=89.50 E-value=0.48 Score=46.06 Aligned_cols=63 Identities=19% Similarity=0.363 Sum_probs=41.9
Q ss_pred EEEEEeCChHHHHHHHH--HhcCCCEEEE-ECCCCcHHHHHHcCCcc---cCHHHhcc--ccCEEEEeCCC
Q 046427 194 TLAVMGFGKVGTEVARR--AKGLGMNVIA-HDPYAQADRARATGVGL---VSFEEAIS--TADFISLHMPL 256 (595)
Q Consensus 194 tvGIIGlG~IG~~vA~~--l~~~G~~V~~-~d~~~~~~~a~~~g~~~---~~l~ell~--~aD~V~l~~Pl 256 (595)
++.|||.|++|++++.. .+..||++++ ||-.+..---+-.++.. .+|++.++ +.|+.++|+|.
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 58999999999999875 3467898665 77654311001112222 24667777 68899999994
No 499
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=89.44 E-value=0.75 Score=50.89 Aligned_cols=104 Identities=17% Similarity=0.261 Sum_probs=64.6
Q ss_pred EEEEeCChHHHH-HHHHHhcCCCEEEEECCCCcH--HHHHHcCCccc--CHHHhccccCEEEEeCCCChhcc--------
Q 046427 195 LAVMGFGKVGTE-VARRAKGLGMNVIAHDPYAQA--DRARATGVGLV--SFEEAISTADFISLHMPLTPATS-------- 261 (595)
Q Consensus 195 vGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~--~l~ell~~aD~V~l~~Plt~~t~-------- 261 (595)
+-|||+|.+|.+ +|+.|+..|.+|.++|..... +..++.|+... .-.+.+.++|+|+..--..+...
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~ 81 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER 81 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence 679999999998 999999999999999976532 22344566542 12345678999987532222111
Q ss_pred --ccccHHHH--hcCC-CceEEEeccCCchhcHHHHHHHHhc
Q 046427 262 --KMFNDEAF--FKMK-KGVRIVNVARGGVVDEEALVRALDS 298 (595)
Q Consensus 262 --~li~~~~l--~~mk-~gailiN~arg~~vd~~aL~~aL~~ 298 (595)
.++++..+ ..++ .-.+-|--+.|+.-...-+...|+.
T Consensus 82 ~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 123 (448)
T TIGR01082 82 GIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKE 123 (448)
T ss_pred CCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHH
Confidence 22333222 2233 2345555557888666666666764
No 500
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.43 E-value=1.5 Score=47.49 Aligned_cols=91 Identities=29% Similarity=0.402 Sum_probs=65.6
Q ss_pred eeeecCCEEEEEeC---ChH-------HHHHHHHHhcCCCEEEEECCCCcHHH--HHHcCCcccCHHHhccccCEEEEeC
Q 046427 187 GVSLVGKTLAVMGF---GKV-------GTEVARRAKGLGMNVIAHDPYAQADR--ARATGVGLVSFEEAISTADFISLHM 254 (595)
Q Consensus 187 g~~l~gktvGIIGl---G~I-------G~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~g~~~~~l~ell~~aD~V~l~~ 254 (595)
+..+.|.+|.++|+ |.+ ...+.+.+...|.+|.+|||+.+... ....++....+++.++.+|+|++.+
T Consensus 317 ~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~~~~~~~~~~~~~~e~al~~~D~vVi~t 396 (436)
T COG0677 317 GKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELPTREDGEGVTLAILEEALKDADAVVIAT 396 (436)
T ss_pred CCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcchhhhhccccchhhHHHHhccCCEEEEEe
Confidence 55688999999998 444 34688889999999999999985422 2233345567999999999999987
Q ss_pred CCChhccccccHHHHhcCCCceEEEec
Q 046427 255 PLTPATSKMFNDEAFFKMKKGVRIVNV 281 (595)
Q Consensus 255 Plt~~t~~li~~~~l~~mk~gailiN~ 281 (595)
- +++ ..-++.+.+..+ ..+++|+
T Consensus 397 D-H~~-fk~id~~~i~~~--~~vivDt 419 (436)
T COG0677 397 D-HSE-FKEIDYEAIGKE--AKVIVDT 419 (436)
T ss_pred c-cHH-hhcCCHHHhccC--CcEEEEC
Confidence 4 222 224677777644 5577775
Done!