RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 046427
(595 letters)
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 664 bits (1714), Expect = 0.0
Identities = 193/546 (35%), Positives = 281/546 (51%), Gaps = 22/546 (4%)
Query: 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFE 111
S P VL+A+KL + + L + V ++L + DAL+VRS T V EV
Sbjct: 3 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLA 62
Query: 112 SSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
+ A +LK+V RAGVG+DNVD+ AAT G LVVNAPT+N +AAEH +ALL A +R I A
Sbjct: 63 A-APKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAA 121
Query: 172 DASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRAR 231
DAS++ W+R+ + G + GKT+ V+G G++G VA+R G V+A+DPY RA
Sbjct: 122 DASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA 181
Query: 232 ATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEA 291
G+ L+S ++ ++ ADFIS+H+P TP T+ + + EA K K GV IVN ARGG+VDE A
Sbjct: 182 QLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAA 241
Query: 292 LVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAV 351
L A+ G + A LDVF EP DS L V VTPHLGAST EAQ+ ++AE+V
Sbjct: 242 LADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESV 300
Query: 352 IGALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASA 411
AL GE AVN E+AP++ L KLG LA L S+ V
Sbjct: 301 RLALAGEFVPDAVNVGGGVVN--EEVAPWLDLVRKLGVLAGVLS--DELPVSLSVQVRGE 356
Query: 412 RGPDDLDTRLLRAMITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLE 471
+ +LR +G+ + V VNA +A +RG+ + N
Sbjct: 357 LA--AEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVTAEICK---ASESPNHRS 411
Query: 472 FIQVQIANVESKFGSAISDIGDIRVEGRV--KDGKPHLTKVGSFGVDVSLEGSIILCRQV 529
+ V+ +D + V G + + ++ D+ +G ++ V
Sbjct: 412 VVDVRAVG---------ADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHYV 462
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEE 589
D+PG +GK+G+LLG VN+ + A A + + +D++ +V I +
Sbjct: 463 DRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYK 522
Query: 590 FVFLKL 595
+ L
Sbjct: 523 LEVVDL 528
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 482 bits (1243), Expect = e-169
Identities = 133/307 (43%), Positives = 190/307 (61%), Gaps = 2/307 (0%)
Query: 52 SKPTVLVAEKLGEAGLDVLKNFA-NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVF 110
+ VLVA L E + VLK+ V + L + +A+IVRS KVTR V
Sbjct: 2 KRMKVLVAAPLHEKAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVI 61
Query: 111 ESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQ 170
ES A +LKV+ RAGVG+DN+D+ AA E G VVNAP A++ + AE + L+ ++AR IA
Sbjct: 62 ES-APKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAF 120
Query: 171 ADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA 230
AD ++ G W + + +G+ L GKT+ ++GFG++G +VA+ A LGMN++ +DPY +RA
Sbjct: 121 ADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERA 180
Query: 231 RATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEE 290
+ V E + +D +++H+PL +T + N+E MKK ++N +RG VVD
Sbjct: 181 KEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTN 240
Query: 291 ALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEA 350
ALV+AL G I+ A LDVF EEP KD L +NV +TPH+GAST EAQE +E+AE
Sbjct: 241 ALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEK 300
Query: 351 VIGALKG 357
V+ LKG
Sbjct: 301 VVKILKG 307
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 480 bits (1239), Expect = e-168
Identities = 148/325 (45%), Positives = 200/325 (61%), Gaps = 3/325 (0%)
Query: 35 PRRRKTKRFAVLATFITSKPTVLVAEKLGEAGLDVLKNFA-NVDCSYNLSPEELCTKISL 93
+ + + VL+++ L +L++ V NLS EEL ++
Sbjct: 8 SSGVDLGTENLYFQSMANLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQD 67
Query: 94 CDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAA 153
C+ LIVRS TKVT +V + A +L+VVGRAG G+DNVDL AAT G LV+N P N+++A
Sbjct: 68 CEGLIVRSATKVTADVINA-AEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSA 126
Query: 154 AEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKG 213
AE ++ +AR I QA AS+K GKW+R K++G L GKTL ++G G++G EVA R +
Sbjct: 127 AELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQS 186
Query: 214 LGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMK 273
GM I +DP + + + GV + EE DFI++H PL P+T+ + ND F + K
Sbjct: 187 FGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCK 246
Query: 274 KGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLG 333
KGVR+VN ARGG+VDE AL+RAL SG + AALDVFTEEPP +D LV HENV PHLG
Sbjct: 247 KGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLG 305
Query: 334 ASTTEAQEGVAIEIAEAVIGALKGE 358
AST EAQ EIA + +KG+
Sbjct: 306 ASTKEAQSRCGEEIAVQFVDMVKGK 330
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 483 bits (1246), Expect = e-168
Identities = 115/369 (31%), Positives = 179/369 (48%), Gaps = 16/369 (4%)
Query: 33 GPPRRRKTKRFAVLATFITSKPTVLVAEKLGEAGLDVLKNFANVDCSY---NLSPEELCT 89
GP + + + VL+ E + + ++ K+ + ++ L +L
Sbjct: 1 GPGSMTERLSLS------RDRINVLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIK 54
Query: 90 KISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTAN 149
IS + +RS T++T E+F + A RL VG VG + V+L AA + G V NAP +N
Sbjct: 55 AISSAHIIGIRSRTQLTEEIFAA-ANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSN 113
Query: 150 TIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVAR 209
T + AE I + + R I S AG W++ + GKTL ++G+G +G++V
Sbjct: 114 TRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGN 173
Query: 210 RAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAF 269
A+ LGM V +D + S +E + T+D +SLH+P + +TSK+ +
Sbjct: 174 LAESLGMTVRYYDTSDKLQYGNVKPA--ASLDELLKTSDVVSLHVPSSKSTSKLITEAKL 231
Query: 270 FKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAK----DSKLVLHEN 325
KMKKG ++N ARG VD EAL + L G ++ AA+DVF EP + + L EN
Sbjct: 232 RKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLEN 291
Query: 326 VTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELAPFVTLAE 385
V +TPH+G ST EAQE + E+ ++ AVN P V F+ + E
Sbjct: 292 VILTPHIGGSTEEAQERIGTEVTRKLVEYSDVGSTVGAVNFPQVQLPPRPTGTRFMHVHE 351
Query: 386 KLGGLAVQL 394
G+ L
Sbjct: 352 NRPGILNSL 360
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 460 bits (1185), Expect = e-160
Identities = 100/331 (30%), Positives = 160/331 (48%), Gaps = 8/331 (2%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFES 112
+P V V K+ L+ LK +A+V+ S EEL I D +IV TK+TREV E+
Sbjct: 2 RPKVGVLLKMKREALEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLEN 61
Query: 113 SAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQAD 172
A RLKV+ G DN+DL AT+ G V + A AE + L+ + R I AD
Sbjct: 62 -AERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYAD 120
Query: 173 ASVKAGKWQRNKYVGVS------LVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ 226
++ G+W+ + + L GK + ++G G +G +ARR G+ + + +
Sbjct: 121 KFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRK 180
Query: 227 ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286
+ + + +E + +D + L +PLT T + N+E K++ G +VN+ RG +
Sbjct: 181 VNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGAL 239
Query: 287 VDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIE 346
VDE+A+ A+ G + A DVF +EP + +TPH EAQE V
Sbjct: 240 VDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFR 299
Query: 347 IAEAVIGALKGELAATAVNAPMVPAEVISEL 377
E ++ L+GE+ VN ++ I +
Sbjct: 300 AVENLLKVLRGEVPEDLVNKEVLEVRPIENV 330
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 451 bits (1162), Expect = e-157
Identities = 110/306 (35%), Positives = 169/306 (55%), Gaps = 6/306 (1%)
Query: 56 VLVAEKLGEAGLDVLKNFA-NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSA 114
L+ + + E + L+ VD +S EEL I D ++VRS TKVT++V E
Sbjct: 8 ALITDPIDEILIKTLREKGIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEK-G 66
Query: 115 GRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADAS 174
+LK++ RAG+G+DN+D A + VV AP A+T +A E I L+ A AR + + A
Sbjct: 67 KKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMAL 126
Query: 175 VKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATG 234
K+G + K G+ L GKT+ ++GFG++GT+V A +GM V+A+D ++A
Sbjct: 127 AKSGIF--KKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKIN 184
Query: 235 VGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVR 294
VS EE + +D ISLH+ ++ + + F MK V IVN +R V+ +AL+
Sbjct: 185 AKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLD 244
Query: 295 ALDSGIISQAALDVFTEEPPAKD--SKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVI 352
+ G + A DVF EPP ++ +L+ HE V VT H+GA T EAQ+ VA + ++
Sbjct: 245 YIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLL 304
Query: 353 GALKGE 358
A+K
Sbjct: 305 NAMKEL 310
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 446 bits (1150), Expect = e-153
Identities = 115/401 (28%), Positives = 184/401 (45%), Gaps = 26/401 (6%)
Query: 52 SKPTVLVAEKLGEAGLDVLKN--FANVDC-SYNLSPEELCTKISLCDALIVRSGTKVTRE 108
K L+ E + + L+ L+ + N++ L E+L I + +RS T +T +
Sbjct: 3 DKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTED 62
Query: 109 VFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNI 168
V + A +L +G +G + VDL AA + G V NAP +NT + AE I L + R +
Sbjct: 63 VINA-AEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 121
Query: 169 AQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD 228
+A+A G + GK L ++G+G +GT++ A+ LGM V +D
Sbjct: 122 PEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE--NK 179
Query: 229 RARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVD 288
+ + ++ +D +SLH+P P+T M + MK G ++N +RG VVD
Sbjct: 180 LPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD 239
Query: 289 EEALVRALDSGIISQAALDVFTEEPPAKD----SKLVLHENVTVTPHLGASTTEAQEGVA 344
AL AL S ++ AA+DVF EP S L +NV +TPH+G ST EAQE +
Sbjct: 240 IPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIG 299
Query: 345 IEIAEAVIGALKGELAATAVNAPMVPAE--------VISELAPFV------TLAEKLGGL 390
+E+A +I +AVN P V I E P V AE+ +
Sbjct: 300 LEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNI 359
Query: 391 AVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGII 431
A Q + + + V + + + + ++A+ G I
Sbjct: 360 AAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAI--PGTI 398
Score = 35.3 bits (82), Expect = 0.059
Identities = 11/64 (17%), Positives = 28/64 (43%)
Query: 524 ILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGE 583
++ ++PG++ + + + VN+ + A V+ I DE+ + + L+ +
Sbjct: 334 LMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKA 393
Query: 584 TPAI 587
P
Sbjct: 394 IPGT 397
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 440 bits (1133), Expect = e-152
Identities = 93/327 (28%), Positives = 153/327 (46%), Gaps = 12/327 (3%)
Query: 51 TSKPTVLVAEKL-GEAGLDVLKNFANVDCSYNLSPEELCTKI-SLCDALIVRSGTKVTRE 108
+ P V + + + +LK+ A V S +E+ K+ + ++ +TRE
Sbjct: 19 SHMPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTRE 78
Query: 109 VFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNI 168
E L+++ R G G DN+D+ +A + G V N P A+ A+ + + + R
Sbjct: 79 DLEK-FKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRA 137
Query: 169 AQADASVKAGKWQRN-------KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH 221
+++ G ++ + G+TL ++G G+VG VA RAK G NV+ +
Sbjct: 138 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 197
Query: 222 DPYAQADRARATGVGLVS-FEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280
DPY RA G+ VS ++ + +D ++LH L + ND +M++G +VN
Sbjct: 198 DPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 257
Query: 281 VARGGVVDEEALVRALDSGIISQAALDVFTEEPP-AKDSKLVLHENVTVTPHLGASTTEA 339
ARGG+VDE+AL +AL G I AALDV EP L N+ TPH + +A
Sbjct: 258 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQA 317
Query: 340 QEGVAIEIAEAVIGALKGELAATAVNA 366
+ E A + A+ G + + N
Sbjct: 318 SIEMREEAAREIRRAITGRIPDSLKNC 344
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 410 bits (1057), Expect = e-140
Identities = 81/340 (23%), Positives = 139/340 (40%), Gaps = 20/340 (5%)
Query: 51 TSKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRS--GTKVTRE 108
++ + +A L + G +++ L I D +I +T+E
Sbjct: 23 CTENKLGIANWLKDQGHELI-----TTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKE 77
Query: 109 VFESSAGRLKVVGRAGVGIDNVDLSAATEHGC--LVVNAPTANTIAAAEHGIALLTAMAR 166
+ A +LK+V AGVG D++DL + G V+ +N ++ AEH + + + R
Sbjct: 78 RIDK-AKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVR 136
Query: 167 NIAQADASVKAGKWQRNKYV--GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY 224
N A + W+ + GKT+A +G G++G V R + + Y
Sbjct: 137 NFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDY 196
Query: 225 AQ--ADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281
D G V + EE ++ AD ++++ PL T + N E K KKG +VN
Sbjct: 197 QALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNT 256
Query: 282 ARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVT-----VTPHLGAST 336
ARG + E + AL+SG + DV+ +P KD N +TPH +T
Sbjct: 257 ARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTT 316
Query: 337 TEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISE 376
+AQ A + G+ + ++ E ++
Sbjct: 317 LDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGEYGTK 356
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 406 bits (1045), Expect = e-139
Identities = 98/334 (29%), Positives = 147/334 (44%), Gaps = 11/334 (3%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFAN---VDCSYNLSPEELCTKISLCDALIVRSG--TKVTR 107
P L + D L++ + V EL I LI VT
Sbjct: 19 NPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTA 78
Query: 108 EVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARN 167
E + A LK++ AG+G D++DL AA G V +N ++ AE + + + RN
Sbjct: 79 ERIKK-AKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRN 137
Query: 168 IAQADASVKAGKWQRN--KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225
V G+W Y L GKT+ +G G++G + +R K G N++ HD
Sbjct: 138 FVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQ 197
Query: 226 -QADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVAR 283
+ + TG V E + D I ++MPLT T MFN E K+KKGV IVN AR
Sbjct: 198 MAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNAR 257
Query: 284 GGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGV 343
G +++ +A+V A++SG I + DV+ +P KD N +TPH +T +AQ
Sbjct: 258 GAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRY 317
Query: 344 AIEIAEAVIGALKGELAATAVNAPMVPAEVISEL 377
A + + KGE T + E+ +
Sbjct: 318 AAGTKDMLERYFKGEDFPTENY-IVKDGELAPQY 350
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 389 bits (1001), Expect = e-131
Identities = 83/339 (24%), Positives = 138/339 (40%), Gaps = 13/339 (3%)
Query: 50 ITSKPTVLVAEKLGEAGLDVL--KNFANVDCSYNLSP--EELCTKISLCDALIVRSG--T 103
I P L+ GE GL N + + + ++ D +I +
Sbjct: 42 IDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPA 101
Query: 104 KVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTA 163
+T E A LK+ AG+G D+VDL +A + V N+I+ AEH + ++ +
Sbjct: 102 YLTPERIAK-AKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILS 160
Query: 164 MARNIAQADASVKAGKWQRNKYV--GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH 221
+ RN + + G W V L + + G++G V RR +++
Sbjct: 161 LVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYT 220
Query: 222 DPY-AQADRARATGVGL-VSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIV 279
D + + + + E+ D ++L+ PL P T M NDE K+G IV
Sbjct: 221 DRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIV 280
Query: 280 NVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEA 339
N ARG + D +A+ RAL+SG ++ A DV+ +P KD +TPH+ +T A
Sbjct: 281 NTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTA 340
Query: 340 QEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELA 378
Q A E + +G +V ++
Sbjct: 341 QARYAAGTREILECFFEGRPIRDEYL--IVQGGALAGTG 377
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 388 bits (999), Expect = e-131
Identities = 82/342 (23%), Positives = 134/342 (39%), Gaps = 31/342 (9%)
Query: 57 LVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGR 116
++A++ + ++ ++ D L+VRS T+V+R
Sbjct: 3 ILADENIPVVDAFFADQGSIR--RLPGRAIDRAALAEVDVLLVRSVTEVSRAALA--GSP 58
Query: 117 LKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVK 176
++ VG +G D++DL E G +AP N ++ + L AMA
Sbjct: 59 VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE---------- 108
Query: 177 AGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG 236
G L +T V+G G+VG + +GLG V+ DP +AR
Sbjct: 109 --------VRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPR---QAREPDGE 157
Query: 237 LVSFEEAISTADFISLHMPLTP----ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEAL 292
VS E ++ AD ISLH PL T + ++ ++ G +VN +RG VVD +AL
Sbjct: 158 FVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQAL 217
Query: 293 VRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVI 352
R L+ G + ALDV+ EP + + TPH+ + E + +I +A
Sbjct: 218 RRLLEGGADLEVALDVWEGEPQ--ADPELAARCLIATPHIAGYSLEGKLRGTAQIYQAYC 275
Query: 353 GALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQL 394
+ + +L P A L L +
Sbjct: 276 AWRGIAERVSLQDVLPETWLAGLQLNPGCDPAWALATLCRAV 317
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 386 bits (993), Expect = e-131
Identities = 93/341 (27%), Positives = 153/341 (44%), Gaps = 20/341 (5%)
Query: 57 LVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALI-VRSGTKVTREVFESSAG 115
KL L V + +L +++ +AL+ +R T+VTR++ +
Sbjct: 13 DAVRKLDCFSLLQDHEV-KVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDR-LP 70
Query: 116 RLKVVGRAGV----GIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
+LK++ + G ++DL A T+ G +V+ + +A AE AL+ A R I Q
Sbjct: 71 KLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGK-GSPVAPAELTWALVMAAQRRIPQY 129
Query: 172 DASVKAGKWQRNKY----------VGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH 221
AS+K G WQ++ +G L G+TL + G+GK+G VA + GMNV+
Sbjct: 130 VASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVW 189
Query: 222 DPYAQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVN 280
+RARA G + S + +D +S+H+ L T + +MK VN
Sbjct: 190 GRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVN 249
Query: 281 VARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQ 340
+R +V+E +V AL+ G AA+DVF EP + L+ EN TPH+G E+
Sbjct: 250 TSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESY 309
Query: 341 EGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELAPFV 381
E + ++ L+G + N + +I
Sbjct: 310 EMYFGIAFQNILDILQGN-VDSVANPTALAPALIRAEGHHH 349
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 382 bits (983), Expect = e-130
Identities = 79/279 (28%), Positives = 130/279 (46%), Gaps = 15/279 (5%)
Query: 85 EELCTKISLCDALIVR----SGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGC 140
E T + D + +V ++ + R K++ G+D++D++ E+
Sbjct: 15 EIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVL-GKRTKMIQAISAGVDHIDVNGIPENVV 73
Query: 141 LVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGF 200
L NA A +I+ AEH ALL A A+NI + + +KAG ++++ L GK L ++G+
Sbjct: 74 LCSNAG-AYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--TTLLYGKALGILGY 130
Query: 201 GKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPAT 260
G +G VA AK GM VIA+ + V S + +DF+ + +PLT T
Sbjct: 131 GGIGRRVAHLAKAFGMRVIAYTRSSVDQNV---DVISESPADLFRQSDFVLIAIPLTDKT 187
Query: 261 SKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKL 320
M N +K + IVNVAR VV + ++ L DV+ EP ++ L
Sbjct: 188 RGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNL 247
Query: 321 VLHENVTVTPHLGASTTEAQEGVAIEIA-EAVIGALKGE 358
N ++PH+ + +AI++A E V +GE
Sbjct: 248 ---RNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGE 283
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 368 bits (948), Expect = e-123
Identities = 81/349 (23%), Positives = 137/349 (39%), Gaps = 34/349 (9%)
Query: 51 TSKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVF 110
++ +LV E + ++ V +++ DAL+VRS TKV +
Sbjct: 1 SNAMKILVDENM-PYARELFSRLGEVK--AVPGRPIPVEELNHADALMVRSVTKVNESLL 57
Query: 111 ESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQ 170
+ VG A G D+VD + + G AP N IA E+ + L +A
Sbjct: 58 S--GTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER--- 112
Query: 171 ADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA 230
G SL +T+ ++G G VG+ + R + LG+ + DP A
Sbjct: 113 ---------------DGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPR---AA 154
Query: 231 RATGVGLVSFEEAISTADFISLHMPLTP----ATSKMFNDEAFFKMKKGVRIVNVARGGV 286
R + +E + AD ++ H PL T + ++ ++K G ++N RG V
Sbjct: 155 RGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPV 214
Query: 287 VDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIE 346
VD AL+ L++G LDV+ EP + L+ ++ T H+ T E + +
Sbjct: 215 VDNAALLARLNAGQPLSVVLDVWEGEPD-LNVALLEAVDI-GTSHIAGYTLEGKARGTTQ 272
Query: 347 IAEAVIGALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLV 395
+ EA + E ++PA + L + LV
Sbjct: 273 VFEAYSAFIGREQRVALET--LLPAPEFGRITLHGPLDQPTLKRLAHLV 319
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 366 bits (942), Expect = e-123
Identities = 92/328 (28%), Positives = 154/328 (46%), Gaps = 14/328 (4%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDC---SYNLSPEELCTKISLCDALIVRSGTKVTREV 109
P +++ ++ E L +L + L+ EE+ + A++ +V +
Sbjct: 2 LPKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADF 61
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
++ L+V+G A G DN D+ A T G + P T+ AE I L + R++
Sbjct: 62 LQA-CPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 120
Query: 170 QADASVKAGKWQ--RNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ- 226
ADA V++GK++ + ++ G L T+ +G G +G +A R +G G + H+ A
Sbjct: 121 AADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALD 180
Query: 227 ADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286
+ G+ V+ E +++DFI L +PL T + N E ++ G +VN RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 287 VDEEALVRALDSGIISQAALDVFTEE-------PPAKDSKLVLHENVTVTPHLGASTTEA 339
VDE A++ AL+ G + A DVF E P D L+ H N TPH+G++
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 340 QEGVAIEIAEAVIGALKGELAATAVNAP 367
+ + A+ ++ AL GE AVN
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVNRL 328
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 352 bits (905), Expect = e-118
Identities = 111/329 (33%), Positives = 186/329 (56%), Gaps = 12/329 (3%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYN---LSPEELCTKISLCDALIVRSGTKVTREV 109
KP V + ++ E G+ +L++ V+ + + E L K+ DAL+ ++ +EV
Sbjct: 2 KPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEV 61
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
FE+ A +L++V VG DN+D+ AT+ G V N P T A A+ ALL A AR++
Sbjct: 62 FEN-APKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVV 120
Query: 170 QADASVKAGKWQRNK-------YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHD 222
+ D V++G+W++ ++G + GKT+ ++G G++G +A+RAKG M ++ +
Sbjct: 121 KGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYS 180
Query: 223 PYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282
+ + R E+ + +DF+ L +PLT T + N+E MKK ++N+A
Sbjct: 181 RTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA 240
Query: 283 RGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEG 342
RG VVD ALV+AL G I+ A LDVF EEP + +L +NV +TPH+G+++ A+EG
Sbjct: 241 RGKVVDTNALVKALKEGWIAGAGLDVFEEEPYY-NEELFKLDNVVLTPHIGSASFGAREG 299
Query: 343 VAIEIAEAVIGALKGELAATAVNAPMVPA 371
+A +A+ +I +GE+ T VN ++
Sbjct: 300 MAELVAKNLIAFKRGEIPPTLVNREVIKI 328
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 334 bits (858), Expect = e-111
Identities = 87/313 (27%), Positives = 145/313 (46%), Gaps = 18/313 (5%)
Query: 75 NVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSA 134
++ + ++ + + V K+T E+ RLK++ VG D++DL
Sbjct: 24 SLKIYTTDVSKVPENELKKAELISVFVYDKLTEELLSK-MPRLKLIHTRSVGFDHIDLDY 82
Query: 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNK-YVGVSLVGK 193
+ G LV + P + + AEH A++ + + + + + VK + ++ + L
Sbjct: 83 CKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARELNRL 142
Query: 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLH 253
TL V+G G++G+ VA GM V+ +D + + + G S +E + +D ISLH
Sbjct: 143 TLGVIGTGRIGSRVAMYGLAFGMKVLCYDVV-KREDLKEKGCVYTSLDELLKESDVISLH 201
Query: 254 MPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEP 313
+P T T M N+E MK GV ++N ARG VVD +AL RA G S LDVF +E
Sbjct: 202 VPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEE 261
Query: 314 P---------------AKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGE 358
K +L +NV +TPH+ T ++ E + E + V +KG+
Sbjct: 262 ILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGD 321
Query: 359 LAATAVNAPMVPA 371
L N + P+
Sbjct: 322 LEQIKGNFVVGPS 334
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 334 bits (858), Expect = e-111
Identities = 77/307 (25%), Positives = 133/307 (43%), Gaps = 17/307 (5%)
Query: 76 VDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFES-SAGRLKVVGRAGVGIDNVDLSA 134
++ E D + T VFE A +K + VG DN+D++A
Sbjct: 27 LEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTA 86
Query: 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRN-KYVGVSLVGK 193
++G + N P + A AE + + RN+ + A ++AG +++ ++G L +
Sbjct: 87 MKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQ 146
Query: 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLH 253
T+ VMG G +G + KG G VIA+DPY + VS E+ +D I LH
Sbjct: 147 TVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP--MKGDHPDFDYVSLEDLFKQSDVIDLH 204
Query: 254 MPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEP 313
+P + + N+ AF MK G ++N AR ++D +A++ L SG ++ +D + E
Sbjct: 205 VPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET 264
Query: 314 P-------------AKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELA 360
+L+ NV ++PH+ T A + + ++ L
Sbjct: 265 EDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGET 324
Query: 361 ATAVNAP 367
+T V P
Sbjct: 325 STEVTGP 331
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 331 bits (850), Expect = e-109
Identities = 85/304 (27%), Positives = 137/304 (45%), Gaps = 15/304 (4%)
Query: 76 VDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFES-SAGRLKVVGRAGVGIDNVDLSA 134
V+ + L E D ++V E ++ + + + VG+DN+D++
Sbjct: 29 VEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAK 88
Query: 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKT 194
A E G + N P + A AEH + R D V + +G + +
Sbjct: 89 AKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQV 148
Query: 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHM 254
+ V+G G +G + +G G VI +D + + G + S ++ AD ISLH+
Sbjct: 149 VGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE-LEKKGYYVDSLDDLYKQADVISLHV 207
Query: 255 PLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPP 314
P PA M NDE+ KMK+ V IVNV+RG +VD +A++R LDSG I A+DV+ E
Sbjct: 208 PDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVG 267
Query: 315 -------------AKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAA 361
A+ + L+ NV VTP TT A + ++ + + ++G+ A
Sbjct: 268 IFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAE 327
Query: 362 TAVN 365
T V
Sbjct: 328 TPVK 331
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 321 bits (824), Expect = e-106
Identities = 68/320 (21%), Positives = 125/320 (39%), Gaps = 21/320 (6%)
Query: 64 EAGLDVLKNFANVDCSY---NLSPEELCTKISLCDALIVRSGTKVTREVFES-SAGRLKV 119
+ D L+ +E + DA+I+R ++ + +K
Sbjct: 13 LPIFEACNKEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKY 72
Query: 120 VGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAGK 179
+ G D++D A E G + P + A AE + + R+ A +
Sbjct: 73 ILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKN 132
Query: 180 WQRNKY-VGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLV 238
++ + + + T+ V+G G++G A+ G+G VI D + + V
Sbjct: 133 FKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFE--IKGIEDYCTQV 190
Query: 239 SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDS 298
S +E + +D I++H P + + KMK G +VN ARG +VD EA++ A++S
Sbjct: 191 SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVES 250
Query: 299 GIISQAALDVFTEEP--------------PAKDSKLVLHENVTVTPHLGASTTEAQEGVA 344
G + DV E P + + L+ V +TPHLG+ T EA + +
Sbjct: 251 GKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMV 310
Query: 345 IEIAEAVIGALKGELAATAV 364
+ + + +
Sbjct: 311 EVSYQNLKDLAETGDCPNKI 330
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 315 bits (810), Expect = e-104
Identities = 91/320 (28%), Positives = 153/320 (47%), Gaps = 9/320 (2%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYN---LSPEELCTKISLCDALIVRSGTKVTREV 109
K +L+ L EA + + +V + ++ +E+ DAL++ K +EV
Sbjct: 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEV 60
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
+ +K + +G D++DL A G V NAP T+A AE + LL AR
Sbjct: 61 IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAG 120
Query: 170 QADASVKAGKWQR---NKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPY-- 224
+ + ++ W + VG L KTL + GFG +G +A+RA+G M++ D +
Sbjct: 121 EGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA 180
Query: 225 AQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARG 284
+ +D A S + +S + F SL+ P TP T FN + +G +VN ARG
Sbjct: 181 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240
Query: 285 GVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVA 344
+VD E +V AL++G ++ A DVF EP + N + PH+G++ T+A+E +A
Sbjct: 241 DLVDNELVVAALEAGRLAYAGFDVFAGEPNI-NEGYYDLPNTFLFPHIGSAATQAREDMA 299
Query: 345 IEIAEAVIGALKGELAATAV 364
+ + + G + A+
Sbjct: 300 HQANDLIDALFGGADMSYAL 319
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 314 bits (806), Expect = e-103
Identities = 108/315 (34%), Positives = 154/315 (48%), Gaps = 13/315 (4%)
Query: 56 VLVAEKLGEAGLDVLKNFANVDCSYN---LSPEELCTKISLCDALIVRSGTKVTREVFES 112
VLV L LD L+ + L EL ++ LI ++ EV +
Sbjct: 3 VLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDR 62
Query: 113 SAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQAD 172
A LKV+ VG+D+VDL AA E G V + P T A A+ +ALL A+AR + +
Sbjct: 63 -AKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGA 121
Query: 173 ASVKAGKWQRNK---YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR 229
A + G W+ +G+ L G TL ++G G++G VA+RA GM V+ H
Sbjct: 122 AYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHAR-----T 176
Query: 230 ARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289
+ +S EE + AD +SLH PLTP T ++ N E F MK+G ++N ARG +VD
Sbjct: 177 PKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDT 236
Query: 290 EALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAE 349
EALV AL G + A LDV EP L N +TPH+G++ +E +A E
Sbjct: 237 EALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVE 295
Query: 350 AVIGALKGELAATAV 364
++ L+G V
Sbjct: 296 NLLAVLEGREPPNPV 310
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 312 bits (801), Expect = e-102
Identities = 68/313 (21%), Positives = 113/313 (36%), Gaps = 22/313 (7%)
Query: 56 VLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAG 115
+ V +L + L+ + + + +A +V +++T E
Sbjct: 3 LYVNFELPPEAEEELRKYFKI---------VRGGDLGNVEAALV---SRITAEELAK-MP 49
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASV 175
RLK + G+D++ + H V +N A AE +ALL A + I Q +
Sbjct: 50 RLKFIQVVTAGLDHLPWESIPPHV-TVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKM 108
Query: 176 KAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGV 235
K G + R + G+ +AV+G G++GT V + LG V
Sbjct: 109 KRGDYGR-DVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT----PKEGPWR 163
Query: 236 GLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRA 295
S EEA+ A +PL T + + M + VNV R V+D + ++R
Sbjct: 164 FTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRI 223
Query: 296 LDSGIISQAALDVFT-EEPPAKDSKLVLHENVTVTPHLGAST--TEAQEGVAIEIAEAVI 352
L A DV+ AKD++ NV TP + + +E +I
Sbjct: 224 LKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLI 283
Query: 353 GALKGELAATAVN 365
G
Sbjct: 284 TYATGGRPRNIAK 296
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 304 bits (782), Expect = 2e-99
Identities = 87/324 (26%), Positives = 149/324 (45%), Gaps = 9/324 (2%)
Query: 51 TSKPTVLVAEKLGEAGLDVLKNFANVDCSYN-----LSPEELCTKISLCDALIVRSGTKV 105
V V ++ G L A+ + + +EL ++ L+ V
Sbjct: 6 VRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHV 65
Query: 106 TREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMA 165
+ + +++ LKV+ VGID++ L + G V P T AE ++LL
Sbjct: 66 DKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 125
Query: 166 RNIAQADASVKAGKWQRNK---YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA-H 221
R + +A VK G W K G L T+ ++G G++G +ARR K G+
Sbjct: 126 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 185
Query: 222 DPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281
+ + A VS E + +DFI + LTPAT + N + F KMK+ +N+
Sbjct: 186 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245
Query: 282 ARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQE 341
+RG VV+++ L +AL SG I+ A LDV + EP + L+ +N + PH+G++T +
Sbjct: 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 305
Query: 342 GVAIEIAEAVIGALKGELAATAVN 365
+++ A ++ L+GE + +
Sbjct: 306 TMSLLAANNLLAGLRGEPMPSELK 329
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 286 bits (734), Expect = 4e-92
Identities = 71/320 (22%), Positives = 149/320 (46%), Gaps = 7/320 (2%)
Query: 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSYN---LSPEELCTKISLCDALIVRSGTKVTRE 108
+ + A L+ +++ + L+P + ++ + L V + +T E
Sbjct: 27 PIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAE 86
Query: 109 VFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNI 168
V LK + VG D++D++AA G V++ P + A AE + L+ R
Sbjct: 87 VIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRG 146
Query: 169 AQADASVKAGKWQRNK---YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA 225
+AD V++G W +G+ L G+ L + G G++G +A RA+G G+ + H+
Sbjct: 147 YEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTR 206
Query: 226 QADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGG 285
+ + + + + +D + P P + + K+ +G ++N++RG
Sbjct: 207 LSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGD 266
Query: 286 VVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAI 345
+++++AL+ AL S + A LDVF EP D + +N+ +TPH+G++T E ++ +
Sbjct: 267 LINDDALIEALRSKHLFAAGLDVFANEPAI-DPRYRSLDNIFLTPHIGSATHETRDAMGW 325
Query: 346 EIAEAVIGALKGELAATAVN 365
+ + + + ++ ++
Sbjct: 326 LLIQGIEALNQSDVPDNLIS 345
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 284 bits (729), Expect = 1e-91
Identities = 79/311 (25%), Positives = 134/311 (43%), Gaps = 4/311 (1%)
Query: 56 VLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAG 115
VL+A+ L L+ D ++ + + + + + +
Sbjct: 4 VLMAQATKPEQLQQLQTTY-PDWTFKDAAAVTAADYDQIEVMYG-NHPLLKTILARP-TN 60
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASV 175
+LK V G+D + L A G +V N + A +E +A + ++ R A +
Sbjct: 61 QLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQ 120
Query: 176 KAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGV 235
+ + +L G+ L + G G++G +A +A LGM+VI + V
Sbjct: 121 RGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETV 180
Query: 236 GLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRA 295
+ +A++TA+FI +PLTP T +F+ E F + K+ ++N+ RG VD AL+ A
Sbjct: 181 AFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTA 240
Query: 296 LDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGAL 355
LD +S AALDV EP D L ++V +TPH+ + V A +
Sbjct: 241 LDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFV 300
Query: 356 K-GELAATAVN 365
K G L V+
Sbjct: 301 KDGTLVRNQVD 311
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 283 bits (727), Expect = 4e-91
Identities = 84/345 (24%), Positives = 142/345 (41%), Gaps = 26/345 (7%)
Query: 52 SKPTVLVA---EKLGEAGLDVLKNFANVDCSYNLSPEELCT-----KISLCDALIVRSGT 103
+P VL+ + + + V + + + + +A+I +
Sbjct: 2 PRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVE 61
Query: 104 KVT------REVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHG 157
T ++ LKV AG G D +DL A E G N+ A A ++
Sbjct: 62 NGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLA 121
Query: 158 IALLTAMARNIAQADASVKAGKWQR-------NKYVGVSLVGKTLAVMGFGKVGTEVARR 210
+ L+ ++ R + ++ + + G + + G L +G G + E+AR+
Sbjct: 122 LYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARK 181
Query: 211 A-KGLGMNVIAHDPY-AQADRARATGVGLV-SFEEAISTADFISLHMPLTPATSKMFNDE 267
A GLGM ++ +D A A+ +A G V S EE +D +S+ +P T + ++
Sbjct: 182 AVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEA 241
Query: 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVT 327
F MK G RIVN ARG V+ ++AL+ AL SG + A LDV EP +L+ ++VT
Sbjct: 242 FFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQV-SKELIEMKHVT 300
Query: 328 VTPHLGASTTEAQEGVAIEIAEAVIGALKGELAA-TAVNAPMVPA 371
+T H+G E + L T P+
Sbjct: 301 LTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPAGKVFAPS 345
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 257 bits (660), Expect = 3e-81
Identities = 94/333 (28%), Positives = 149/333 (44%), Gaps = 14/333 (4%)
Query: 39 KTKRFAVLATFITSKPTVLVAEKLGEAGLDVLKNFANVDCSYN-LSPEELCTKISLCDAL 97
+ F + F KP +L+ E + +D L+ +V Y L + A+
Sbjct: 16 ENLYFQSMLEFRNVKPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEAALPSIRAV 75
Query: 98 IVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHG 157
G ++ E E L ++ GVG D VDL+ A V P A+ G
Sbjct: 76 ATGGGAGLSNEWMEK-LPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLG 134
Query: 158 IALLTAMARNIAQADASVKAGKWQRNKY--VGVSLVGKTLAVMGFGKVGTEVARRAKGLG 215
IAL+ A+ R + D V+ G+W + +G S GK + V+G G++G +A RA+ G
Sbjct: 135 IALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFG 194
Query: 216 MNVIAHDPYAQADRARATGVG---LVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKM 272
M+V + R+ +GV S + +D +++ + + AT + + +
Sbjct: 195 MSVRYWN------RSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQAL 248
Query: 273 KKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHL 332
+VNVARG VVDE+AL+ AL SG I+ A LDVF EP S+ N + PH
Sbjct: 249 GPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAI-RSEFHTTPNTVLMPHQ 307
Query: 333 GASTTEAQEGVAIEIAEAVIGALKGELAATAVN 365
G++T E + + + + GE A VN
Sbjct: 308 GSATVETRMAMGKLVLANLAAHFAGEKAPNTVN 340
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 254 bits (650), Expect = 8e-80
Identities = 84/333 (25%), Positives = 135/333 (40%), Gaps = 8/333 (2%)
Query: 35 PRRRKTKRFAVLATFITSKPTVLVAEKLGEAGLDVLKNFANVDCSYN--LSPEELCTKIS 92
V VL+ + L + + + L +
Sbjct: 5 HHHHHHSSGLVPRGSHMEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAE 64
Query: 93 LCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIA 152
A++ S E+ ++ +L++V VG+D VDL E G V N P T
Sbjct: 65 SIRAVVGNSNAGADAELIDA-LPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDD 123
Query: 153 AAEHGIALLTAMARNIAQADASVKAGKWQRNKY-VGVSLVGKTLAVMGFGKVGTEVARRA 211
A+ I L+ A+ R I + D V+ G W+ + + GK + ++G G++G VA RA
Sbjct: 124 VADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERA 183
Query: 212 KGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFK 271
+ + + + S E S +D + + PLTP T+ + N E
Sbjct: 184 EAFDCPISYFSRSKKPNTNYTY---YGSVVELASNSDILVVACPLTPETTHIINREVIDA 240
Query: 272 MKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPH 331
+ ++N+ RG VDE LV AL G + A LDVF EP KL ENV + PH
Sbjct: 241 LGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEV-PEKLFGLENVVLLPH 299
Query: 332 LGASTTEAQEGVAIEIAEAVIGALKGELAATAV 364
+G+ T E ++ +A + + G+ T V
Sbjct: 300 VGSGTVETRKVMADLVVGNLEAHFSGKPLLTPV 332
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 197 bits (503), Expect = 2e-58
Identities = 70/308 (22%), Positives = 122/308 (39%), Gaps = 6/308 (1%)
Query: 51 TSKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVF 110
S+ T+L+ + +LK + + + + +A I+ + + +
Sbjct: 3 LSQRTLLLLSQDNAHYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAEPARAKPLL 62
Query: 111 ESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQ 170
A +L G+D + L A + N +E+ L ++ R +
Sbjct: 63 AK-ANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPL 120
Query: 171 ADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRA 230
K WQ + Y L G+TL ++G G +G +A K GM V+ +
Sbjct: 121 YREQQKQRLWQSHPYQ--GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAG 178
Query: 231 RATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEE 290
L + + ++ AD I +P T T +F F K G + NV RG ++E
Sbjct: 179 FDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEG 238
Query: 291 ALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEA 350
L+ AL +G + A LDVF +EP DS L N+ +TPH ++ + + I
Sbjct: 239 DLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHN-SAYSFPDDVAQI-FVRN 296
Query: 351 VIGALKGE 358
I + G+
Sbjct: 297 YIRFIDGQ 304
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 180 bits (458), Expect = 5e-52
Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 10/249 (4%)
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAA------AEHGIALLTAMARNIA 169
RLK V G G+D + L + P E+ ++ + R
Sbjct: 59 RLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFD 118
Query: 170 QADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADR 229
A W+ + ++ +MG G +G +VA + G + ++
Sbjct: 119 DYQALKNQALWKP--LPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWP 176
Query: 230 ARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDE 289
+ VG ++ + +P T T + N E ++ G ++N+ARG V E
Sbjct: 177 GVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQE 236
Query: 290 EALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAE 349
L+ ALDSG + A LDVF++EP ++S L H V +TPH+ A+ T E + I+
Sbjct: 237 ADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHI-AAVTRPAEAIDY-ISR 294
Query: 350 AVIGALKGE 358
+ KGE
Sbjct: 295 TITQLEKGE 303
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 79.6 bits (196), Expect = 2e-16
Identities = 37/259 (14%), Positives = 80/259 (30%), Gaps = 20/259 (7%)
Query: 58 VAEKLGEAGLDV-LKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGR 116
+ KL + L F +D + + ++ + T E AG+
Sbjct: 20 IIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNE-----AGK 74
Query: 117 LKVVGRAGVGIDNVDLSAATEHGCLVV--NAPTANTIAAAEHGIALLTAMARNIAQADAS 174
+ + + ++ T + C+V + T + L+ M R+ S
Sbjct: 75 VDTIFSNESIVLTEEMIEKTPNHCVVYSGISNTYLNQCMKKTNRTLVKLMERDDIAIYNS 134
Query: 175 VKAGKW---QRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHD-PYAQADRA 230
+ + ++ ++ G +AV+G G+VG VAR+ LG V R
Sbjct: 135 IPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARI 194
Query: 231 RATGVGLVSFE---EAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVV 287
G+ + + D +P + + +M ++++A
Sbjct: 195 AEMGMEPFHISKAAQELRDVDVCINTIP-----ALVVTANVLAEMPSHTFVIDLASKPGG 249
Query: 288 DEEALVRALDSGIISQAAL 306
+ + L
Sbjct: 250 TDFRYAEKRGIKALLVPGL 268
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 1e-10
Identities = 87/549 (15%), Positives = 154/549 (28%), Gaps = 179/549 (32%)
Query: 44 AVLATFITSKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSG- 102
A+ A + T LV K +++KN+ P + + +L A V G
Sbjct: 103 ALAAKLLQENDTTLVKTK------ELIKNYITA-RIMAKRPFDKKSNSALFRA--VGEGN 153
Query: 103 TKVT----------------REVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAP 146
++ R+++++ + D + SA T L+
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG---------DLIKFSAETLSE-LIRTTL 203
Query: 147 TANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMG-FGKVGT 205
A + G+ +L + D + +S + + +
Sbjct: 204 DAEKVF--TQGLNILEWLENPSNTPDKDYLL-------SIPISCPLIGVIQLAHY----- 249
Query: 206 EVARRAKGLGMNVIAHDPYAQADRAR-ATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264
V + G P + ATG + + TA I+ S
Sbjct: 250 VVTAKLLGF-------TPGELRSYLKGATGHS-----QGLVTAVAIAE------TDS--- 288
Query: 265 NDEAFFKMKKGVRIVNVARGGVVDEEALVRALD----SGIISQAALDVFTEEPPA-KDSK 319
E+FF ++ +A+ G+ A + P +DS
Sbjct: 289 -WESFF-------------------VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS- 327
Query: 320 LVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATA------VNAPMVPAEV 373
+ + +P L S + E + + L A VN V
Sbjct: 328 -LENNEGVPSPMLSIS------NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK--NLV 378
Query: 374 ISELAPFVTLAEKLGGLAVQL--VAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGII 431
+S P + L GL + L SG+ ++ + S R R L
Sbjct: 379 VS--GP----PQSLYGLNLTLRKAKAPSGLDQSRIPF-SERKLK-FSNRFL--------- 421
Query: 432 EPISSVF--------VNLVNADFIAKQRGLRVTEERI----VLDGSPENPLEFIQVQIAN 479
P++S F +L+N D + + +I DGS +
Sbjct: 422 -PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS-------------D 467
Query: 480 VESKFGSAISDIGDIRVEGRV---KDGKPHLTKVGSFGVDVSLEGSIILCRQVDQPGIIG 536
+ GS I D + V + T + FG PG
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG-----------------PGGAS 510
Query: 537 KVGSLLGDN 545
+G L N
Sbjct: 511 GLGVLTHRN 519
Score = 57.0 bits (137), Expect = 1e-08
Identities = 65/354 (18%), Positives = 109/354 (30%), Gaps = 136/354 (38%)
Query: 211 AKGLGMNVIAHDPYAQADRARATGVGLVSFEEA---------ISTADFISLHMPLTPATS 261
+G+GM D Y + A+ + A S D I ++ P +
Sbjct: 1628 EQGMGM-----DLYKTSKAAQDV------WNRADNHFKDTYGFSILD-IVINNP----VN 1671
Query: 262 KMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLV 321
F +KG RI R S +I + +D + ++ +
Sbjct: 1672 LTI----HFGGEKGKRI---------------RENYSAMIFETIVDGKLK------TEKI 1706
Query: 322 LHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISELAPFV 381
E + H + T +++G L+AT PA + E A F
Sbjct: 1707 FKE---INEHSTSYTFRSEKG---------------LLSATQ-FTQ--PALTLMEKAAFE 1745
Query: 382 TLAEKLGGLAVQ--LVAG---G--------SGVKSVK--VSYASARGPDDLDTRLLRAMI 426
L K GL AG G + V S++ V RG ++ +
Sbjct: 1746 DLKSK--GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRG------MTMQVAV 1797
Query: 427 TKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQ---------VQI 477
+ E S N IA + R+ S E ++ V+I
Sbjct: 1798 PRD--ELGRS------NYGMIA------INPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 478 AN--VESKFGS--AISDIGDIR-VE------GRVKDGKPHLTKVGSFGVDVSLE 520
N VE + GD+R ++ +K K + ++ +SLE
Sbjct: 1844 VNYNVE---NQQYVAA--GDLRALDTVTNVLNFIKLQKIDIIEL---QKSLSLE 1889
Score = 52.7 bits (126), Expect = 3e-07
Identities = 76/465 (16%), Positives = 130/465 (27%), Gaps = 176/465 (37%)
Query: 10 LMLAASPNKPRLSSTLVPPATIRGPPRRRKTKRFAV-------------LAT-FITSKPT 55
++A P + +S L + A+ L + T
Sbjct: 130 RIMAKRPFDKKSNSALFRAV------GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 56 V-----LVAEKLGE-------------AGLDV---LKN---------------------- 72
V AE L E GL++ L+N
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 73 --FAN--VDC-SYNLSPEELCTKIS--------LCDALIVRSGTKVTREVFESSAGR-LK 118
A+ V +P EL + + L A+ + + E F S + +
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD--SWESFFVSVRKAIT 301
Query: 119 V---VG-RAGVGIDNVDLSAATEHGCLVVNAPTANTIA-AAEHGIALLTAMA--RNI--A 169
V +G R + + + + + E+ + + M N+
Sbjct: 302 VLFFIGVRC--------------YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 170 QADASVKAGKWQRNKY------VGVSLV-GKTLAVMGFGKVGTEVARRAKGL-GMNVIAH 221
Q V + N + V +SLV G V V+ + L G+N+
Sbjct: 348 QVQDYVN----KTNSHLPAGKQVEISLVNGAKNLV---------VSGPPQSLYGLNLTLR 394
Query: 222 DPYAQA--DRARATGVGLVSFEE---AISTADF--ISL--HMP-LTPATSKMFND----E 267
A + D++R + F E S F ++ H L PA+ + D
Sbjct: 395 KAKAPSGLDQSR------IPFSERKLKFSNR-FLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 268 AFFKMKK-GVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLH-EN 325
F K + + + G D +R L I + D P + E
Sbjct: 448 VSFNAKDIQIPVYDTFDGS--D----LRVLSGSISERIV-DCIIRLP--------VKWET 492
Query: 326 VTVTP--H-----------LGASTTEAQEGVAIEIAEAVIGALKG 357
T H LG T ++G + + A G L
Sbjct: 493 TTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA--GTLDI 535
Score = 51.2 bits (122), Expect = 8e-07
Identities = 54/318 (16%), Positives = 90/318 (28%), Gaps = 123/318 (38%)
Query: 38 RKTKRFAVLATFITSKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDAL 97
+ T F++L + + P L GE G + +N++ + + + KI
Sbjct: 1654 KDTYGFSILD-IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI---FKE 1709
Query: 98 IVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANT---IAAA 154
I T T F S G L T T +
Sbjct: 1710 INEHSTSYT---FRSEKGLLSA---------------------------TQFTQPALTLM 1739
Query: 155 EHGIALLTAM-ARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKG 213
E A + ++ + ADA+ AG SL G E
Sbjct: 1740 E--KAAFEDLKSKGLIPADATF-AGH---------SL-G-------------E------- 1766
Query: 214 LGMNVIAHDPYAQADRARATGVGLVSFEEAIST----ADFISLHMP-------------L 256
YA A A+ ++S E + + + +P +
Sbjct: 1767 ----------YA----ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 257 TPAT-SKMFNDEAFFKM------KKG--VRIVN--------VARGGVVDEEALVRALDS- 298
P + F+ EA + + G V IVN VA G + + + L+
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFI 1872
Query: 299 GI--ISQAALDV-FTEEP 313
+ I L + E
Sbjct: 1873 KLQKIDIIELQKSLSLEE 1890
Score = 36.6 bits (84), Expect = 0.031
Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 66/232 (28%)
Query: 383 LAEKLGGLAVQLVA----------GGSGVKSVKVSYASARGPDDLDTRLLRAMITKGIIE 432
+ G + +V GG K ++ +Y++ +D +L I K I E
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 433 PISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPL---EFIQVQIANVESKFGSAIS 489
+S F S + L +F Q + +E A
Sbjct: 1713 HSTSY-------TF-----------------RSEKGLLSATQFTQPALTLMEK----AA- 1743
Query: 490 DIGDIRVEGRVKDGKP---H-------LTKVGSFGVDVSLEGSIILCRQVDQPGIIGKVG 539
D++ +G + H L + V +S+E + + V G+ +V
Sbjct: 1744 -FEDLKSKGLIPADATFAGHSLGEYAALASLA--DV-MSIESLVEV---VFYRGMTMQV- 1795
Query: 540 SLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGETPAIEEFV 591
++ D N+ + I P + + +E + V++++G+ V
Sbjct: 1796 AVPRDELGRSNY-GMIAINPGR---VAASFSQEALQYVVERVGK--RTGWLV 1841
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.6 bits (146), Expect = 1e-09
Identities = 81/619 (13%), Positives = 164/619 (26%), Gaps = 214/619 (34%)
Query: 10 LM--LAASPNKPRLSSTL-----------VPPATIRGPPRRRKTK--RFAVL----ATFI 50
LM + +P + + + R + R A+L A +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 51 T-------SKPTVLVAEKLGEAGLDVLKNFAN----VDCSYNLSPEE-------LCTKIS 92
K T + + V ++ SPE L +I
Sbjct: 154 LIDGVLGSGK-TWVALDVC--LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 93 LCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHG-CLVV--NAPTAN 149
+ + + S L+ L + + CL+V N A
Sbjct: 211 -PNWTSRSDHSSNIKLRIHSIQAELR------------RLLKSKPYENCLLVLLNVQNAK 257
Query: 150 TIAAAEHG--IALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEV 207
A I L T R D + A +SL + M EV
Sbjct: 258 AWNAFNLSCKILLTT---RFKQVTDF-LSAATTTH-----ISLDHHS---MTLTP--DEV 303
Query: 208 ARR-AKGLGMNVIAHD-PYAQADRARATGVGLVSFEEAISTADF-ISL------HMPLTP 258
K L D P E ++T +S+ T
Sbjct: 304 KSLLLKYLDCRP--QDLP-----------------REVLTTNPRRLSIIAESIRDGLATW 344
Query: 259 ATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQA--ALDVFTEEPPAK 316
K N + K+ + E+ + L+ + L VF P
Sbjct: 345 DNWKHVNCD---KLTTII-------------ESSLNVLEPAEYRKMFDRLSVF---P--P 383
Query: 317 DSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGALKGELAATAVNAPMVPAEVISE 376
+ I ++ + ++ V+++
Sbjct: 384 SAH---------------------------IPTILLSLIWFDV------IKSDVMVVVNK 410
Query: 377 LAPFVTLAEKLGGLAVQLVAGGSGVKSVKVS----YASARGPDDLDTRLLRAMITK---- 428
L + +L EK K +S Y + + + L R+++
Sbjct: 411 LHKY-SLVEK-------------QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 429 -------GIIEPISSVFVNLVNADFIA-----KQRGLRVTE-ERIVLDGSPENPLEFIQV 475
I + F + I + R+T + LD F++
Sbjct: 457 KTFDSDDLIPPYLDQYFYS-----HIGHHLKNIEHPERMTLFRMVFLD------FRFLEQ 505
Query: 476 QIANVESKF---GSAISDIGDIRV-EGRVKDGKPHLTK----VGSFGVDVSLEGSIILCR 527
+I + + + GS ++ + ++ + + D P + + F +E ++I +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF--LPKIEENLICSK 563
Query: 528 QVD--QPGIIGKVGSLLGD 544
D + ++ + ++ +
Sbjct: 564 YTDLLRIALMAEDEAIFEE 582
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 50.2 bits (120), Expect = 7e-07
Identities = 43/251 (17%), Positives = 77/251 (30%), Gaps = 32/251 (12%)
Query: 58 VAEKLGEAGLDVL------KNFANVDCSYNLSPEELCTKISLCDALIV-RSGTKVTREVF 110
+ KL E D+ + E + D++I+ S T V
Sbjct: 22 IIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQ---IDSIILPVSATTGEGVVS 78
Query: 111 ESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVV-NAPTANTIAAAEHGIALLTAMARN-- 167
+ V + L H + + AA+ L+ R+
Sbjct: 79 TVFSNEEVV-------LKQDHLDRTPAHCVIFSGISNAYLENIAAQAKRKLVKLFERDDI 131
Query: 168 -IAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNV--IAHDPY 224
I + +V+ ++ ++ G +AV+G G+ G +AR LG NV A
Sbjct: 132 AIYNSIPTVEGTIMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSA 191
Query: 225 --AQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282
A+ +E + D + S + N M I+++A
Sbjct: 192 HLARITEMGLVPFHTDELKEHVKDIDIC-----INTIPSMILNQTVLSSMTPKTLILDLA 246
Query: 283 --RGGVVDEEA 291
GG + A
Sbjct: 247 SRPGGTDFKYA 257
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 43.8 bits (104), Expect = 1e-04
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAIS 245
+ GK + V G+G+VG K +G V DP A +A G LV E I
Sbjct: 216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPIC-ALQACMDGFRLVKLNEVIR 274
Query: 246 TADFI 250
D +
Sbjct: 275 QVDIV 279
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 43.4 bits (103), Expect = 2e-04
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAIS 245
V + GKT V G+G VG A +G G V+ DP A +A G ++ E+ +
Sbjct: 207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPIN-ALQAAMEGYQVLLVEDVVE 265
Query: 246 TADFI 250
A
Sbjct: 266 EAHIF 270
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 42.4 bits (99), Expect = 3e-04
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 192 GKTLAVMG-FGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGLVSFEEAISTADF 249
KT+A++G GK+G + R+ ++ A + + DR + G+ L + I AD
Sbjct: 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADV 70
Query: 250 ISLHMP 255
+ L +P
Sbjct: 71 VVLALP 76
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 42.3 bits (100), Expect = 3e-04
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAIS 245
V + GK V G+G VG A+ G G V DP A +A G +V+ ++A S
Sbjct: 243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPIC-ALQAAMDGFEVVTLDDAAS 301
Query: 246 TAD-FISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV 281
TAD ++ T + + KMK + N+
Sbjct: 302 TADIVVT-----TTGNKDVITIDHMRKMKDMCIVGNI 333
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 42.2 bits (100), Expect = 4e-04
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGLVSFEEAIST 246
SL G T+ V G G VG +A A G ++ D + A A G V+ E+ +ST
Sbjct: 172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLST 230
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 41.7 bits (99), Expect = 5e-04
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 182 RNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFE 241
+ + SL G ++V G G V + ++ G ++ D A A G
Sbjct: 163 KEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEG----A 218
Query: 242 EAISTADFISL 252
+A++ +
Sbjct: 219 DAVAPNAIYGV 229
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 40.9 bits (97), Expect = 8e-04
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220
K G+ L G + V G G+VG VA A+ LGM V+A
Sbjct: 210 KRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVA 246
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 41.0 bits (97), Expect = 8e-04
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220
+ +G+ + G +A+ GFG VG AR G V+A
Sbjct: 227 EKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVA 263
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 40.9 bits (97), Expect = 0.001
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220
K + + GKT+A+ G G VG A + +G VIA
Sbjct: 202 KKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA 238
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 41.0 bits (97), Expect = 0.001
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220
K G+ L + + GFG G+ +A+ G VI
Sbjct: 213 KKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIG 249
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 40.6 bits (96), Expect = 0.001
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220
K G+ + +AV GFG VGT + + G V A
Sbjct: 204 KRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCA 240
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 40.5 bits (95), Expect = 0.001
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVI--AHDPYAQADRARATGVGLVSFEEAIS 245
V + GK V G+G VG A+ +GLG V DP A +A G +V+ E A
Sbjct: 273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPI-CALQAAMEGYRVVTMEYAAD 331
Query: 246 TADFI 250
AD
Sbjct: 332 KADIF 336
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 38.9 bits (91), Expect = 0.004
Identities = 11/46 (23%), Positives = 14/46 (30%)
Query: 175 VKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220
+ + + KT V GFG VG R G I
Sbjct: 227 INEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIT 272
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 38.6 bits (90), Expect = 0.005
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVI--AHDPYAQADRARATGVGLVSFEEAIS 245
+ GK + + G+G VG A KGLG V DP A +A G +V+ +E +
Sbjct: 253 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI-CAIQAVMEGFNVVTLDEIVD 311
Query: 246 TADFI 250
DF
Sbjct: 312 KGDFF 316
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 38.0 bits (89), Expect = 0.007
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220
K+ +LVGKT+A+ GFG V A++ LG +
Sbjct: 222 KHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT 258
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant,
oxidoreductase; 2.90A {Thermotoga maritima} SCOP:
c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Length = 415
Score = 37.5 bits (88), Expect = 0.011
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARR-AKGLGMNVIA 220
+G+ T+AV GFG VG A ++ LG V+A
Sbjct: 201 DVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVA 238
>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid
biosynthesis, knotted protein, oxidoreductase; 2.60A
{Escherichia coli}
Length = 491
Score = 37.3 bits (87), Expect = 0.014
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 20/81 (24%)
Query: 190 LVGKTLAVMGFGKVGTEVARRAKGL-----GMNVI-------AHDPYAQADRARATGVGL 237
L GK + ++G G G +GL G+++ + A +A G +
Sbjct: 35 LQGKKVVIVGCGAQG-----LNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV 89
Query: 238 VSFEEAISTADFISLHMPLTP 258
++EE I AD + + LTP
Sbjct: 90 GTYEELIPQADLV---INLTP 107
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 36.5 bits (85), Expect = 0.021
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220
K + + + +T V G G V ++ L + V+
Sbjct: 244 KSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLT 280
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 36.6 bits (85), Expect = 0.021
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDP-YAQADRARATGVGLV-----SFEEAIST 246
+ + ++G G +G + R +V ++ + A A G + + + A +
Sbjct: 9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAE 68
Query: 247 ADFISLHMPL 256
I L +P+
Sbjct: 69 DALIVLAVPM 78
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 36.0 bits (84), Expect = 0.031
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220
K + +L K V G G V + + G V+
Sbjct: 231 KDLNDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLT 267
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A
{Pseudomonas aeruginosa} PDB: 2xu2_A*
Length = 252
Score = 34.8 bits (81), Expect = 0.056
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 15/76 (19%)
Query: 156 HGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMG-FGKVGTEVARRAKGL 214
HG AL + + A + A + K L +M A
Sbjct: 117 HG-ALYNDLVGDDELLRAVLDA----------CAAYRKGLPLMVLALADNGRELELADEA 165
Query: 215 GMNVIAHDPYAQADRA 230
+ ++ A ADRA
Sbjct: 166 DVPLLFE---AFADRA 178
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization
protein, structural genomics; 1.70A {Pyrococcus
horikoshii} SCOP: c.6.2.5
Length = 255
Score = 34.8 bits (81), Expect = 0.059
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 16/75 (21%)
Query: 156 HGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLG 215
HG AL AM + A A ++ + K L ++ + VA A+ +G
Sbjct: 111 HG-ALYNAMVKEEDLARAVIEG----------ILDFDKDLILVTLS--NSRVADIAEEMG 157
Query: 216 MNVIAHDPYAQADRA 230
+ V ADRA
Sbjct: 158 LKVAHE---VFADRA 169
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics
consortium, structural genomics, protein structure
initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP:
c.6.2.5
Length = 252
Score = 34.4 bits (80), Expect = 0.071
Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 16/75 (21%)
Query: 156 HGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLG 215
HG L A+ ADA +A V L ++G G+E+ R K G
Sbjct: 106 HG-MLYNQAAKEAQLADAIARA----------VYACDPALILVGLA--GSELIRAGKQYG 152
Query: 216 MNVIAHDPYAQADRA 230
+ ADR
Sbjct: 153 LTTREE---VFADRG 164
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein,
structural genomics, NPPSFA; 1.90A {Thermus
thermophilus} SCOP: c.6.2.5
Length = 250
Score = 34.0 bits (79), Expect = 0.094
Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 16/75 (21%)
Query: 156 HGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLG 215
HG AL R+ A A A V L ++ GT A+ G
Sbjct: 111 HG-ALYLKACRDRETARAIALA----------VKAFDPGLPLVVLP--GTVYEEEARKAG 157
Query: 216 MNVIAHDPYAQADRA 230
+ V+ A +RA
Sbjct: 158 LRVVLE---AFPERA 169
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
{Escherichia coli} PDB: 3sbo_A 2yfg_E
Length = 447
Score = 34.2 bits (79), Expect = 0.11
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220
K G+ G ++V G G V +A G VI
Sbjct: 224 KRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVIT 260
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A
{Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A
1euz_A
Length = 419
Score = 33.6 bits (78), Expect = 0.17
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 189 SLVGKTLAVMGFGKVGTEVARR-AKGLGMNVIA 220
+L GKT+A+ G+G G +A+ ++ GM V+A
Sbjct: 209 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVA 241
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot,
C-terminal alpha-helical domain oxidoreductase; 2.00A
{Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Length = 338
Score = 33.4 bits (77), Expect = 0.18
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVI--AHDPYAQADRARATGVGLVSFEEAISTA 247
+ GK +A++G+G G A K G++V A +A A G+ + + A++ A
Sbjct: 14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAA 73
Query: 248 DFISLHMPLTP 258
D + M LTP
Sbjct: 74 DVV---MILTP 81
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 33.3 bits (77), Expect = 0.20
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHD-----PYAQADRARATGVGLV 238
K + V+G + G AR LG V +D A G+ +V
Sbjct: 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVV 60
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 32.9 bits (75), Expect = 0.26
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 193 KTLAVMGFGKVGTEVARRAKGLGMNVIA--HDPYAQADRARATGVGLVSF---EEAISTA 247
TL G G ++R G +I +P Q + RA+G + + E ++
Sbjct: 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP-DQMEAIRASGAEPLLWPGEEPSLDGV 64
Query: 248 DFISLHMP 255
+ +
Sbjct: 65 THLLISTA 72
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 31.9 bits (72), Expect = 0.34
Identities = 13/59 (22%), Positives = 23/59 (38%)
Query: 194 TLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISL 252
+ + G G G + + G +V+ Q G ++ + EA S +D I L
Sbjct: 21 VVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVL 79
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain,
protein NADP complex, structural genomics, PSI; HET:
NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
a.100.1.8 c.2.1.6
Length = 264
Score = 32.2 bits (73), Expect = 0.38
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDP-YAQADRARATGVGLV-SFEEAISTADFI 250
+ +GFG+V +A R + G+ V+ + + RA VG+ + EE + + +
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVV 60
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 31.2 bits (70), Expect = 0.75
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 180 WQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVI--AHDPYAQADRARATGVGL 237
N Y G +AV+G G VG +A LG V DP A RA +G
Sbjct: 11 HHENLYF----QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGA 66
Query: 238 VSFEEAISTADFISLH 253
F + + + L
Sbjct: 67 PPFSQWLPEHPHVHLA 82
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 30.7 bits (69), Expect = 0.97
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 194 TLAVMGFGKVGTEVARRAKGLGMNVIAH--DPYAQADRARATGVGLVSFEEAISTADFIS 251
+ ++G G +A R G G V+ +P + R + + EEA+S+ + I
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKVVVGSRNP-KRTARLFPSAAQVTFQEEAVSSPEVIF 88
Query: 252 L 252
+
Sbjct: 89 V 89
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 31.0 bits (71), Expect = 1.1
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
Query: 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHD--PYAQADRARATGVGLVS---FEEAIST 246
GK + ++G G G G+ D V + +E +
Sbjct: 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMA 64
Query: 247 ADFI 250
AD I
Sbjct: 65 ADLI 68
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure
INIT midwest center for structural genomics, MCSG,
unknown funct; 1.90A {Streptococcus pneumoniae} SCOP:
d.58.18.7
Length = 91
Score = 28.9 bits (65), Expect = 1.2
Identities = 9/51 (17%), Positives = 22/51 (43%)
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKK 580
D+ GI+ V + + +N++ +S + + + DE+ L+
Sbjct: 14 DKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRN 64
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 29.6 bits (67), Expect = 1.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHD 222
K AV+G G+ G + + +G V+A D
Sbjct: 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVD 36
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis,
amino acid kinase domain GCN5-related acetyltransferase,
GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB:
3zzi_A*
Length = 464
Score = 30.8 bits (70), Expect = 1.5
Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 28/105 (26%)
Query: 360 AATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDL-- 417
T E +L VT E+LG A + + V A D
Sbjct: 113 EHTMAVVRKCFLEQNLKL---VTALEQLGVRARPI----TS----GVFTADYLDKDKYKL 161
Query: 418 -------DTRLLRAMITKGIIEPISSV-------FVNLVNADFIA 448
+ A I G + ++S+ +N VNAD A
Sbjct: 162 VGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLN-VNADVAA 205
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S;
HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1
PDB: 1mvn_A* 1e20_A*
Length = 209
Score = 29.9 bits (68), Expect = 1.7
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 13/69 (18%)
Query: 101 SGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAP-TANTIAAAEHGIA 159
+ + S + G + +++L + ++V AP +ANT+ G+
Sbjct: 69 VTLYTDEDEWSSWN-------KIGDPVLHIELRRWAD---VLVIAPLSANTLGKIAGGLC 118
Query: 160 --LLTAMAR 166
LLT + R
Sbjct: 119 DNLLTCIIR 127
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 30.3 bits (69), Expect = 1.7
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA 227
+ + ++G G++G E+A A+ LG+ V+A D YA A
Sbjct: 19 AQKILLLGSGELGKEIAIEAQRLGVEVVAVDRYANA 54
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 30.1 bits (68), Expect = 1.9
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 193 KTLAVMGFGKVGTEVARRAKGLGMNVIA 220
+ + G G +G E+ARR G V
Sbjct: 4 SKILIAGCGDLGLELARRLTAQGHEVTG 31
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 29.8 bits (68), Expect = 2.3
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA 227
+ ++G G++G EVA + LG+ VIA D YA A
Sbjct: 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas
campestris PV}
Length = 467
Score = 30.0 bits (68), Expect = 2.6
Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 28/105 (26%)
Query: 360 AATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDL-- 417
V +L V ++ G A + +G V A D
Sbjct: 126 PHALAIVRKVFQASNLKL---VEALQQNGARATSI----TG----GVFEAEYLNRDTYGL 174
Query: 418 -------DTRLLRAMITKGIIEPISSV-------FVNLVNADFIA 448
+ + A + G I I+S+ +N VNADF A
Sbjct: 175 VGEVKAVNLAPIEASLQAGSIPVITSLGETPSGQILN-VNADFAA 218
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN;
2.91A {Homo sapiens} SCOP: c.34.1.1
Length = 206
Score = 29.1 bits (66), Expect = 2.8
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 141 LVVNAP-TANTIAAAEHGIA--LLTAMAR 166
L++ AP ANT+ GI LLT + R
Sbjct: 99 LLLVAPLDANTLGKVASGICDNLLTCVMR 127
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Length = 413
Score = 29.7 bits (66), Expect = 2.9
Identities = 10/86 (11%), Positives = 24/86 (27%), Gaps = 5/86 (5%)
Query: 70 LKNFANVDCSYNLSPEELCTKISLCDALIVRSGTK-VTREVFESSAGRLKVVGRAGVGID 128
L +++ L+ E+ + I + + E + L+V+ D
Sbjct: 291 LGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRVITNKYENKD 350
Query: 129 NVDLSAATEHGCLVVNAPTANTIAAA 154
+ + + IA
Sbjct: 351 LSN----WHSNIVSLEQLNPENIAET 372
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase,
structural genomics, PSI-2, protein structure
initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Length = 88
Score = 27.6 bits (62), Expect = 3.5
Identities = 7/72 (9%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 510 VGSFGVDVSLEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGV 569
+ F + + G D+ G+ ++ ++ + N+ ++ A + +
Sbjct: 1 MTDFLAGIRIVG-------EDKNGMTNQITGVISKFDTNIR--TIVLNAKDGIFTCNLMI 51
Query: 570 DEEPSREVLKKI 581
+ + L +
Sbjct: 52 -FVKNTDKLTTL 62
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 28.1 bits (62), Expect = 3.5
Identities = 10/60 (16%), Positives = 27/60 (45%)
Query: 426 ITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFG 485
++ + I ++VN V +A ++GL+ +E + ++ + L ++ + G
Sbjct: 35 LSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLG 94
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 29.1 bits (66), Expect = 3.5
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDP-YAQADRARATGV--GLVSFEEAISTADFIS 251
+ V+G G +G +A + G +I + ++A + + TA I
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIF 62
Query: 252 LHMPL 256
L P+
Sbjct: 63 LCTPI 67
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 27.6 bits (61), Expect = 3.9
Identities = 10/60 (16%), Positives = 27/60 (45%)
Query: 426 ITKGIIEPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFG 485
++ + I ++VN V +A ++GL+ +E + ++ + L ++ + G
Sbjct: 26 LSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLG 85
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase,
transferase; HET: COA; 2.67A {Maricaulis maris} PDB:
3s7y_A 3s6h_A*
Length = 460
Score = 29.3 bits (66), Expect = 3.9
Identities = 16/105 (15%), Positives = 24/105 (22%), Gaps = 28/105 (26%)
Query: 360 AATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDL-- 417
+ L V GG A + V A D L
Sbjct: 123 DEAMPIIRDTLTQANLAL---VDAIRDAGGRAAAV----PR----GVFEADIVDADKLGR 171
Query: 418 -------DTRLLRAMITKGIIEPISSV-------FVNLVNADFIA 448
L+ + G ++ + VN +NAD
Sbjct: 172 VGEPRHIHLDLVGSAARAGQAAILACLGETPDGTLVN-INADVAV 215
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary
protein KEFF; potassium channel regulation, domains,
antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli}
PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 29.4 bits (66), Expect = 3.9
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 197 VMGFGKVGTEVAR--RAKGLGMNVIAHDPYAQADRARATGV 235
+ GFG+ G R + G+ M V+ HDP + R G+
Sbjct: 9 IAGFGRFGQITGRLLLSSGVKMVVLDHDP-DHIETLRKFGM 48
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 29.2 bits (66), Expect = 4.1
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 13/74 (17%)
Query: 187 GVSLVGKTLAVMGFG-KVGT---------EVARRAKGLGMNVIAHDPYAQADRARATGVG 236
G + G +A++G+ + G +V+ HDPY
Sbjct: 348 GKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDN 407
Query: 237 LVSFEEAISTADFI 250
L EE + AD I
Sbjct: 408 L---EEVVRNADAI 418
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 29.1 bits (65), Expect = 4.3
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 193 KTLAVMGFGKVGTEVARRAKGLGM-NVIAHDPY--------AQADRARATGVGLVSFEEA 243
T+A +GFG+ +A G + A+D A RA GV +
Sbjct: 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAG 84
Query: 244 ISTADFI 250
I+ AD +
Sbjct: 85 IACADVV 91
>2f06_A Conserved hypothetical protein; structural genomics hypothetical
protein, PSI, protein struc initiative; HET: MSE HIS;
2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11
d.58.18.11
Length = 144
Score = 28.0 bits (62), Expect = 5.0
Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE-EPSREVLKKIGETPAIE 588
++ G + +V +L N+N++ + + A ++ V + + + + LK I
Sbjct: 15 NKSGRLTEVTEVLAKENINLSALCIAENAD--FGILRGIVSDPDKAYKALKDNHFAVNIT 72
Query: 589 EFVFLKL 595
+ V +
Sbjct: 73 DVVGISC 79
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi
conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 29.1 bits (66), Expect = 5.1
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
Query: 211 AKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFI 250
+ + V A+DP+ + D A+ A +
Sbjct: 345 NQEPDIEVCAYDPHVELDFV------EHDMSHAVKDASLV 378
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural
genomics, midwest cente structural genomics; 2.15A
{Thiobacillus denitrificans}
Length = 444
Score = 28.7 bits (65), Expect = 5.8
Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 529 VDQPGIIGKVGSLLGDNNVNVNFMS-VGRIAPQKQA---VMTIGVDEEPSREVLKKIGET 584
D+PG++ + +L D++++++ M ++Q ++T E+ + KI
Sbjct: 367 FDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEAL 426
Query: 585 PAIEE 589
A+
Sbjct: 427 DAVAG 431
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein,
structural genomics, NPPSFA; 1.98A {Homo sapiens}
Length = 143
Score = 27.5 bits (62), Expect = 6.2
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 14/47 (29%)
Query: 141 LVVNAPTANTI----------AAAEHGIALLTAMARNIAQADASVKA 177
LV+N P NT A + GI LLT N +A
Sbjct: 99 LVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT----NFQVTKLFAEA 141
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like
fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus
epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Length = 181
Score = 27.9 bits (63), Expect = 6.4
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 141 LVVNAP-TANTIAAAEHGIA--LLTA--MARN 167
++ P +ANTI +GI LLT +
Sbjct: 76 YILVLPASANTINKIANGICDNLLTTVCLTGY 107
>1u8s_A Glycine cleavage system transcriptional repressor, putative;
structural genomics, protein structure initiative (PSI),
domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5
d.58.18.5
Length = 192
Score = 28.1 bits (62), Expect = 6.5
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQK--------QAVMTIGVDEEPSREVLKK 580
D+ G+ K + + +S I+ K ++ VD + L++
Sbjct: 102 DKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQE 160
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family;
structural genomics, oxidoreductase, PSI-2; HET: UGA;
1.70A {Porphyromonas gingivalis}
Length = 450
Score = 28.6 bits (65), Expect = 6.6
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 17/80 (21%)
Query: 184 KYVGVSLVGKTLAVMG--FGKVGT---------EVARRAKGLGMNVIAHDPYAQADRARA 232
Y ++ G+ +A+ G F K GT + + +G V +DP A A+
Sbjct: 310 TYYKGNVQGRCVAIWGLSF-KPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAM-KEAQK 367
Query: 233 TGVGLVSF----EEAISTAD 248
V + +A+ A+
Sbjct: 368 RLGDKVEYTTDMYDAVRGAE 387
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 27.6 bits (62), Expect = 6.8
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 196 AVMGFGKVGTEVARRAKGLGMNVIAHD 222
V+G G + R G V+A D
Sbjct: 10 IVIGSEAAGVGLVRELTAAGKKVLAVD 36
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family,
oxdidative decarboxylation, cystein, lantibiotics,
mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP:
c.34.1.1
Length = 194
Score = 27.9 bits (63), Expect = 6.9
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 141 LVVNAP-TANTIAAAEHGIA--LLTA--MARN 167
+ P TAN + +G+A L+ +A
Sbjct: 84 IYCIIPATANILGQTANGVAMNLVATTVLAHP 115
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center
for structural genomics of infec diseases, csgid,
oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus}
Length = 175
Score = 27.9 bits (63), Expect = 7.0
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 141 LVVNAP-TANTIAAAEHGIA--LLTA--MARN 167
++ P T+NTI +GI LL
Sbjct: 79 KIIILPATSNTINKIANGICDNLLLTICHTAF 110
>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium
smegmatis} PDB: 2we7_A
Length = 386
Score = 28.3 bits (63), Expect = 7.2
Identities = 19/111 (17%), Positives = 27/111 (24%), Gaps = 29/111 (26%)
Query: 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDPY-AQADRARATGVGLVSFEEAISTADFISLH 253
+ V G VA++ LG V D A AR TAD + +
Sbjct: 207 MLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFATTAR------------FPTADEVVVD 254
Query: 254 MPLTPATSKMFNDEAFFKMKKGVR------IVNVARGGVVDEEALVRALDS 298
P + + + D L AL
Sbjct: 255 WP----------HRYLAAQAEAGAIDARTVVCVLTHDPKFDVPLLEVALRL 295
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped
dimer, enzyme complex with COFA product, oxidoreductase;
HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP:
a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Length = 436
Score = 28.3 bits (64), Expect = 7.4
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 25/84 (29%)
Query: 189 SLVGKTLAVMG--FGKVGT---------EVARRAKGLGMNVIAHDPYAQADRARATGVGL 237
S + + ++G F K GT E+A G G + D + R
Sbjct: 310 SHDTRKVGLLGLSF-KAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEY 368
Query: 238 V-------------SFEEAISTAD 248
+ +E ++++D
Sbjct: 369 IESKIPHVSSLLVSDLDEVVASSD 392
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer,
leukemia, transferase, ATP-binding, proto- oncogene,
phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Length = 312
Score = 28.0 bits (63), Expect = 7.8
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 8/47 (17%)
Query: 170 QADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKV--------GTEVA 208
+ G R + +G L GFG V +VA
Sbjct: 14 PGTPTPPPGGKDREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVA 60
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 28.3 bits (62), Expect = 7.8
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 240 FEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIV 279
+ E I+ I ++ E F MK+G RIV
Sbjct: 246 WRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIV 285
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE AMP;
1.79A {Escherichia coli k-12}
Length = 140
Score = 27.5 bits (62), Expect = 7.9
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 199 GFGKVGTEVARRAKGLGMNVIA--HDPYAQADRARATGV 235
G+G+VG+ + + + ++ + D R GV
Sbjct: 14 GYGRVGSLLGEKLLASDIPLVVIETSR-TRVDELRERGV 51
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET:
ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A
3zzf_A*
Length = 307
Score = 28.3 bits (64), Expect = 8.0
Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 26/96 (27%)
Query: 368 MVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDL---------D 418
E +L VT E+LG A + + V A D
Sbjct: 121 KCFLEQNLKL---VTALEQLGVRARPI--------TSGVFTADYLDKDKYKLVGNIKSVT 169
Query: 419 TRLLRAMITKGIIEPISSVFVNL------VNADFIA 448
+ A I G + ++S+ VNAD A
Sbjct: 170 KEPIEASIKAGALPILTSLAETASGQMLNVNADVAA 205
>2nyi_A Unknown protein; protein structure initiative, PSI, center for
eukaryotic structural genomics, CESG, structural
genomics; 1.80A {Galdieria sulphuraria}
Length = 195
Score = 27.8 bits (61), Expect = 9.3
Identities = 22/165 (13%), Positives = 47/165 (28%), Gaps = 30/165 (18%)
Query: 429 GIIEPISSVF----VNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKF 484
GI+ S N+ ++ + L IVL + IQ + + F
Sbjct: 17 GIVHDFSWALKNISANVESS----RMACLGGDFAMIVLVSLNAKDGKLIQSALESALPGF 72
Query: 485 GSAISDIGDIRVEGRVKDGKPHLTKVGSFGVDVSLEGSIILCRQVDQPGIIGKVGSLLGD 544
+ + D + + + +EG D GI+ V ++L
Sbjct: 73 QISTRRASSVAERHVSPDTREYE---------LYVEGP-------DSEGIVEAVTAVLAK 116
Query: 545 NNVNVNFMSVGRI------APQKQAVMTIGVDEEPSREVLKKIGE 583
N+ + + + + +EV+ +
Sbjct: 117 KGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLYQEVVTALSR 161
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 28.4 bits (64), Expect = 9.5
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 8/63 (12%)
Query: 348 AEAVIGALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVS 407
+ + L+ AVN P + V+S L + A G V+ + V
Sbjct: 674 VRERLRPWQDRLSVAAVNGPR--SVVVS------GEPGALRAFSEDCAAEGIRVRDIDVD 725
Query: 408 YAS 410
YAS
Sbjct: 726 YAS 728
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 28.4 bits (64), Expect = 9.8
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 348 AEAVIGALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVS 407
A IG G L+ +VN P + V++ + L L + A + + V
Sbjct: 690 AAERIGRFAGALSIASVNGPR--SVVVA------GESGPLDELIAECEAEAHKARRIPVD 741
Query: 408 YAS 410
YAS
Sbjct: 742 YAS 744
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine
biosynthesis, amino-acid biosynthesis, diaminopimelate
biosynthesis; HET: KPI CME; 2.10A {Mycobacterium
tuberculosis} PDB: 1xxx_A
Length = 304
Score = 27.7 bits (62), Expect = 9.9
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 28/79 (35%)
Query: 94 CDALIVRSGT-------------KVTREVFESSAGRLKVVGRAGVGIDN----VDLSAAT 136
CD L+V SGT ++ R V E+ R +V+ AG G + + L+ A
Sbjct: 50 CDGLVV-SGTTGESPTTTDGEKIELLRAVLEAVGDRARVI--AGAGTYDTAHSIRLAKAC 106
Query: 137 E----HGCLVV----NAPT 147
HG LVV + P
Sbjct: 107 AAEGAHGLLVVTPYYSKPP 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.365
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,078,418
Number of extensions: 613637
Number of successful extensions: 1969
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1816
Number of HSP's successfully gapped: 184
Length of query: 595
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 496
Effective length of database: 3,937,614
Effective search space: 1953056544
Effective search space used: 1953056544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)