RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 046427
(595 letters)
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 155 bits (392), Expect = 6e-45
Identities = 86/185 (46%), Positives = 116/185 (62%), Gaps = 1/185 (0%)
Query: 149 NTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVA 208
N +AAEH +ALL A +R I ADAS++ W+R+ + G + GKT+ V+G G++G VA
Sbjct: 1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVA 60
Query: 209 RRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEA 268
+R G V+A+DPY RA G+ L+S ++ ++ ADFIS+H+P TP T+ + + EA
Sbjct: 61 QRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEA 120
Query: 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTV 328
K K GV IVN ARGG+VDE AL A+ G + A LDVF EP DS L V V
Sbjct: 121 LAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVV 179
Query: 329 TPHLG 333
TPHLG
Sbjct: 180 TPHLG 184
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 152 bits (384), Expect = 1e-43
Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 6/191 (3%)
Query: 150 TIAAAEHGIALLTAMARNIAQADASVKAGKWQ---RNKYVGVSLVGKTLAVMGFGKVGTE 206
T+A AE + LL AR + + ++ W + VG L KTL + GFG +G
Sbjct: 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQA 61
Query: 207 VARRAKGLGMNVIAHDPY--AQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMF 264
+A+RA+G M++ D + + +D A S + +S + F SL+ P TP T F
Sbjct: 62 LAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 121
Query: 265 NDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHE 324
N + +G +VN ARG +VD E +V AL++G ++ A DVF EP +
Sbjct: 122 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPN-INEGYYDLP 180
Query: 325 NVTVTPHLGAS 335
N + PH+G++
Sbjct: 181 NTFLFPHIGSA 191
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp.,
strain 101 [TaxId: 306]}
Length = 188
Score = 144 bits (364), Expect = 6e-41
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 4/187 (2%)
Query: 151 IAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYV--GVSLVGKTLAVMGFGKVGTEVA 208
I+ AEH + ++ ++ RN + + G W V L + + G++G V
Sbjct: 1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVL 60
Query: 209 RRAKGLGMNVIAHDPYAQADRARATG--VGLVSFEEAISTADFISLHMPLTPATSKMFND 266
RR +++ D + + + E+ D ++L+ PL P T M ND
Sbjct: 61 RRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND 120
Query: 267 EAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKDSKLVLHENV 326
E K+G IVN ARG + D +A+ RAL+SG ++ A DV+ +P KD
Sbjct: 121 ETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYN 180
Query: 327 TVTPHLG 333
+TPH+
Sbjct: 181 GMTPHIS 187
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 138 bits (349), Expect = 8e-39
Identities = 63/189 (33%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
Query: 149 NTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVA 208
NT + AE I L + R + +A+A G + GK L ++G+G +GT++
Sbjct: 1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLG 60
Query: 209 RRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEA 268
A+ LGM V +D + AT V + ++ +D +SLH+P P+T M +
Sbjct: 61 ILAESLGMYVYFYDIENKLPLGNATQV--QHLSDLLNMSDVVSLHVPENPSTKNMMGAKE 118
Query: 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKD----SKLVLHE 324
MK G ++N +RG VVD AL AL S ++ AA+DVF EP S L +
Sbjct: 119 ISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFD 178
Query: 325 NVTVTPHLG 333
NV +TPH+G
Sbjct: 179 NVLLTPHIG 187
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
(Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 193
Score = 127 bits (320), Expect = 1e-34
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 9/187 (4%)
Query: 154 AEHGIALLTAMARNIAQADASVKAGKWQRNK-------YVGVSLVGKTLAVMGFGKVGTE 206
A+ + + + R +++ G ++ + G+TL ++G G+VG
Sbjct: 4 ADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQA 63
Query: 207 VARRAKGLGMNVIAHDPYAQADRARATG-VGLVSFEEAISTADFISLHMPLTPATSKMFN 265
VA RAK G NV+ +DPY RA G + + ++ + +D ++LH L + N
Sbjct: 64 VALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN 123
Query: 266 DEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEP-PAKDSKLVLHE 324
D +M++G +VN ARGG+VDE+AL +AL G I AALDV EP L
Sbjct: 124 DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAP 183
Query: 325 NVTVTPH 331
N+ TPH
Sbjct: 184 NLICTPH 190
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus
helveticus [TaxId: 1587]}
Length = 197
Score = 112 bits (280), Expect = 3e-29
Identities = 62/193 (32%), Positives = 90/193 (46%), Gaps = 14/193 (7%)
Query: 152 AAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRA 211
A AEH + R D V + +G + + + V+G G +G +
Sbjct: 3 AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIM 62
Query: 212 KGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFK 271
+G G VI +D + G + S ++ AD ISLH+P PA M NDE+ K
Sbjct: 63 EGFGAKVITYDIFRN-PELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAK 121
Query: 272 MKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPP-------------AKDS 318
MK+ V IVNV+RG +VD +A++R LDSG I A+DV+ E A+ +
Sbjct: 122 MKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLA 181
Query: 319 KLVLHENVTVTPH 331
L+ NV VTP
Sbjct: 182 DLIARPNVLVTPK 194
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 130
Score = 100 bits (249), Expect = 1e-25
Identities = 50/129 (38%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFE 111
S P VL+A+KL + + L + V ++L + DAL+VRS T V EV
Sbjct: 1 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLA 60
Query: 112 SSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
+ A +LK+V RAGVG+DNVD+ AAT G LVVNAPT+ + A A+ A + +A A
Sbjct: 61 A-APKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALA 119
Query: 172 DASVKAGKW 180
V
Sbjct: 120 GEFVPDAVN 128
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 181
Score = 100 bits (250), Expect = 3e-25
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 8/187 (4%)
Query: 148 ANTIAAAEHGIALLTAMARNIAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEV 207
A+ +A E +ALL A + I Q +K G + R+ + + G+ +AV+G G++GT V
Sbjct: 1 ADAVA--EFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLI-QGEKVAVLGLGEIGTRV 57
Query: 208 ARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDE 267
+ LG V + R T S EEA+ A +PL T + +
Sbjct: 58 GKILAALGAQVRGFSRTPKEGPWRFT----NSLEEALREARAAVCALPLNKHTRGLVKYQ 113
Query: 268 AFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFT-EEPPAKDSKLVLHENV 326
M + VNV R V+D + ++R L A DV+ AKD++ NV
Sbjct: 114 HLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNV 173
Query: 327 TVTPHLG 333
TP +
Sbjct: 174 VATPWVA 180
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
{Lactobacillus casei [TaxId: 1582]}
Length = 199
Score = 96.1 bits (237), Expect = 2e-23
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 16/198 (8%)
Query: 150 TIAAAEHGIALLTAMARNIAQADASVKAGKWQR-NKYVGVSLVGKTLAVMGFGKVGTEVA 208
A AE + + RN+ + A ++AG +++ ++G L +T+ VMG G +G
Sbjct: 2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAI 61
Query: 209 RRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEA 268
+ KG G VIA+DPY VS E+ +D I LH+P + + N+ A
Sbjct: 62 KLFKGFGAKVIAYDPYPMKGDHPDFDY--VSLEDLFKQSDVIDLHVPGIEQNTHIINEAA 119
Query: 269 FFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEPPAKD----------- 317
F MK G ++N AR ++D +A++ L SG ++ +D + E
Sbjct: 120 FNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDP 179
Query: 318 --SKLVLHENVTVTPHLG 333
+L+ NV ++PH+
Sbjct: 180 LWDELLGMPNVVLSPHIA 197
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 129
Score = 92.0 bits (228), Expect = 9e-23
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 3/125 (2%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYN---LSPEELCTKISLCDALIVRSGTKVTREV 109
K +L+ L EA + + +V + ++ +E+ DAL++ K +EV
Sbjct: 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEV 60
Query: 110 FESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
+ +K + +G D++DL A G V NAP T A + +
Sbjct: 61 IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALFG 120
Query: 170 QADAS 174
AD S
Sbjct: 121 GADMS 125
>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor
CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 133
Score = 87.3 bits (216), Expect = 3e-21
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 4/130 (3%)
Query: 54 PTVLVAEKL-GEAGLDVLKNFANVDCSYNLSPEELCTKI-SLCDALIVRSGTKVTREVFE 111
P V + + + +LK+ A V S +E+ K+ + ++ +TRE E
Sbjct: 2 PLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLE 61
Query: 112 SSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQA 171
L+++ R G G DN+D+ +A + G V N P A+ + + I + AR I +A
Sbjct: 62 K-FKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRA 119
Query: 172 DASVKAGKWQ 181
+
Sbjct: 120 ITGRIPDSLK 129
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 132
Score = 85.5 bits (211), Expect = 2e-20
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Query: 52 SKPTVLVAEKLGEAGLDVLKNFANVDCSY---NLSPEELCTKISLCDALIVRSGTKVTRE 108
K L+ E + + L+ L+ + + L E+L I + +RS T +T +
Sbjct: 3 DKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTED 62
Query: 109 VFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNI 168
V ++ +L +G +G + VDL AA + G V NAP ++T A E+ + + I
Sbjct: 63 VINAA-EKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEV--AGKLI 119
Query: 169 AQADASVKAGKW 180
+D
Sbjct: 120 KYSDNGSTLSAV 131
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate
dehydrogenase {Lactobacillus casei [TaxId: 1582]}
Length = 131
Score = 84.7 bits (209), Expect = 3e-20
Identities = 23/129 (17%), Positives = 38/129 (29%), Gaps = 3/129 (2%)
Query: 53 KPTVLVAEKLGEAGLDVLKNFANVDCSYN--LSPEELCTKISLCDALIVRSGTKVTREVF 110
K A Y+ E D + T VF
Sbjct: 2 KIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVF 61
Query: 111 ES-SAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIA 169
E A +K + VG DN+D++A ++G + N P A L + +
Sbjct: 62 EKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLT 121
Query: 170 QADASVKAG 178
+ + S +
Sbjct: 122 KGETSTEVT 130
>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase
{Lactobacillus helveticus [TaxId: 1587]}
Length = 134
Score = 81.1 bits (200), Expect = 6e-19
Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 9/122 (7%)
Query: 60 EKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAG-RLK 118
++ +A DV V+ + L E D ++V E ++ A +
Sbjct: 17 KEWEDAHKDV-----EVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGIT 71
Query: 119 VVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASVKAG 178
+ VG+DN+D++ A E G + N P + H + + A + K
Sbjct: 72 KMSLRNVGVDNIDMAKAKELGFQITNVPVYSY---TTHAVRNMVVKAFDNNLELVEGKEA 128
Query: 179 KW 180
+
Sbjct: 129 ET 130
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
{Pseudomonas sp., strain 101 [TaxId: 306]}
Length = 186
Score = 79.2 bits (195), Expect = 9e-18
Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 11/115 (9%)
Query: 76 VDCSYNLSPEELCTKISLCDALIVRS--GTKVTREVFESSAGRLKVVGRAGVGIDNVDLS 133
V + ++ D +I + +T E + LK+ AG+G D+VDL
Sbjct: 72 VTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAK-NLKLALTAGIGSDHVDLQ 130
Query: 134 AATEHGCLVVNAPTANTIAAAEH--------GIALLTAMARNIAQADASVKAGKW 180
+A + V N+ I R I V+ G
Sbjct: 131 SAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL 185
>d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase
SerA {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 77.6 bits (191), Expect = 1e-17
Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 18/148 (12%)
Query: 372 EVISELAPFVTLAEKLGGLAVQLVAGGSGVKSVKVSYASARGPDDLDTRLLRAMITKGII 431
V E+AP++ L KLG LA L S+ V + +LR +G+
Sbjct: 3 VVNEEVAPWLDLVRKLGVLAGVLS--DELPVSLSVQVRGEL--AAEEVEVLRLSALRGLF 58
Query: 432 EPISSVFVNLVNADFIAKQRGLRVTEERIVLDGSPENPLEFIQVQIANVESKFGSAISDI 491
+ V VNA +A +RG+ + + + ++ V +D
Sbjct: 59 SAVIEDAVTFVNAPALAAERGVTAEICKASESPNHRSVVDVRAVG------------ADG 106
Query: 492 GDIRVEGRV--KDGKPHLTKVGSFGVDV 517
+ V G + + ++ D+
Sbjct: 107 SVVTVSGTLYGPQLSQKIVQINGRHFDL 134
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 121
Score = 65.4 bits (159), Expect = 1e-13
Identities = 21/160 (13%), Positives = 42/160 (26%), Gaps = 41/160 (25%)
Query: 56 VLVAEKLGEAGLDVLKNFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAG 115
+ V +L + L+ + + +L E +++T E
Sbjct: 3 LYVNFELPPEAEEELRKYFKIVRGGDLGNVEAAL------------VSRITAEELAK-MP 49
Query: 116 RLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQADASV 175
RLK + G+D++ + H V +N ++ R
Sbjct: 50 RLKFIQVVTAGLDHLPWESIPPHV-TVAGNAGSNGYGNERVWRQMVMEAVR--------- 99
Query: 176 KAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLG 215
L G +A+R +G
Sbjct: 100 ------------------NLITYATGGRPRNIAKREDYIG 121
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase,
regulatory (C-terminal) domain {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 78
Score = 62.1 bits (151), Expect = 7e-13
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 520 EGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLK 579
+G ++ VD+PG +GK+G+LLG VN+ + A A + + +D++ +V
Sbjct: 2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRT 61
Query: 580 KIGETPAIEEFVFLKL 595
I + + L
Sbjct: 62 AIAAAVDAYKLEVVDL 77
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase,
regulatory (C-terminal) domain {Escherichia coli [TaxId:
562]}
Length = 84
Score = 59.3 bits (144), Expect = 8e-12
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 516 DVSLE---GSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEE 572
+VSL G ++ ++PG++ + + + VN+ + A V+ I DE+
Sbjct: 3 EVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADED 62
Query: 573 PSREVLKKIGETPAI 587
+ + L+ + P
Sbjct: 63 VAEKALQAMKAIPGT 77
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 61.5 bits (149), Expect = 9e-12
Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 4/127 (3%)
Query: 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEAIST 246
V + GK V G+G VG A+ +G G VI + A V+ +
Sbjct: 19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT---TMDE 75
Query: 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNV-ARGGVVDEEALVRALDSGIISQAA 305
A T + F +MK + N+ +D + L + +
Sbjct: 76 ACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQ 135
Query: 306 LDVFTEE 312
+D + +
Sbjct: 136 VDRYRLK 142
>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 163
Score = 53.3 bits (128), Expect = 5e-09
Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 7/151 (4%)
Query: 187 GVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAIS 245
+ GK + + G+G VG A KGLG V + A +A G +V+ +E +
Sbjct: 18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVD 77
Query: 246 TADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAA 305
DF + E KMK + N+ + + I
Sbjct: 78 KGDFFITCTGNVD----VIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK 133
Query: 306 LDVFTEEPPAKDSKLVLHENVTVTPHLGAST 336
V P + +VL + +LG +T
Sbjct: 134 PQVDRITLPNGNKIIVLARGRLL--NLGCAT 162
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 230
Score = 40.8 bits (95), Expect = 2e-04
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 5/113 (4%)
Query: 180 WQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGLV 238
+ + SL G ++V G G V + ++ G ++ D A A A
Sbjct: 27 AAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADA 86
Query: 239 SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEA 291
AI + P A + ND ++K V I A + D
Sbjct: 87 VAPNAIYGVT-CDIFAPC--ALGAVLNDFTIPQLKAKV-IAGSADNQLKDPRH 135
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 293
Score = 41.2 bits (96), Expect = 2e-04
Identities = 12/52 (23%), Positives = 18/52 (34%)
Query: 171 ADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHD 222
+ ++ + + KT AV GFG VG R G +A
Sbjct: 15 IENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVG 66
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1
{Salmonella typhimurium [TaxId: 90371]}
Length = 113
Score = 38.5 bits (89), Expect = 3e-04
Identities = 14/96 (14%), Positives = 22/96 (22%), Gaps = 1/96 (1%)
Query: 188 VSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQAD-RARATGVGLVSFEEAIST 246
L + ++G G V AR G + + A L E
Sbjct: 8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDE 67
Query: 247 ADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA 282
S + + N + NV
Sbjct: 68 TLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVV 103
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 242
Score = 39.4 bits (91), Expect = 7e-04
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 1/118 (0%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVGLVSFEEA 243
K + + GKT+A+ G G VG A + +G VIA + + +
Sbjct: 23 KKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNK 82
Query: 244 ISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGII 301
T + + N +A FK+ + + A V+ + ++
Sbjct: 83 GLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPA-AIENVIRGDNAGLVKARLVV 139
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase
{Rhodococcus sp., M4 [TaxId: 1831]}
Length = 201
Score = 37.4 bits (86), Expect = 0.002
Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 189 SLVGKTLAVMGFGKVGTEVARRAKGLGMNVI-AHDPYAQADRARATGVGLVSFEEAISTA 247
SL G T+ V G G VG +A A G ++ A + A A G V+ E+ +ST
Sbjct: 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTP 83
Query: 248 DFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEA 291
+ P + + A + DE A
Sbjct: 84 CDVF-----APCAMGGVITTEVARTLDCSVVAGAANNVIADEAA 122
>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium
lapideum [TaxId: 32060]}
Length = 168
Score = 35.3 bits (81), Expect = 0.009
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 196 AVMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARATGVG---------LVSFEEAIST 246
++G G VGTE A+ A GLG V D + T G E A++
Sbjct: 36 VILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAE 95
Query: 247 ADFI--SLHMPLTPATSKMFNDEAFFKMKKGVRIVNVA--RGGVV 287
AD + ++ +P A + +M+ G IV+VA +GG V
Sbjct: 96 ADLLIGAVLVPGRRAP-ILVPASLVEQMRTGSVIVDVAVDQGGCV 139
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 255
Score = 35.5 bits (81), Expect = 0.013
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMNVIA 220
K+ +LVGKT+A+ GFG V A++ LG +
Sbjct: 28 KHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT 64
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 234
Score = 34.0 bits (77), Expect = 0.030
Identities = 26/135 (19%), Positives = 43/135 (31%), Gaps = 19/135 (14%)
Query: 184 KYVGVSLVGKTLAVMGFGKVGTEVARR-AKGLGMNVIAHDPYAQA--------------D 228
+G+ T+AV GFG VG A ++ LG V+A
Sbjct: 23 DVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRY 82
Query: 229 RARATGVGLVSFEEAISTADFISLH--MPLTPATSKMFNDEAFFKMKKGVRIVNVARGGV 286
+ V E I+ + + L + + A + ++K + V G
Sbjct: 83 KKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIHAGNAERIKA--KAVVEGANGP 140
Query: 287 VDEEALVRALDSGII 301
EA GI+
Sbjct: 141 TTPEADEILSRRGIL 155
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 32.6 bits (73), Expect = 0.047
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQ 226
K AV+G G+ G + + +G V+A D +
Sbjct: 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE 34
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 32.8 bits (73), Expect = 0.051
Identities = 17/162 (10%), Positives = 45/162 (27%), Gaps = 7/162 (4%)
Query: 195 LAVMGFGKVGTEVARRAKGLGMNVIAHDPYA-QADRARATGVGLVSFEEAISTADFISLH 253
+ V+G G +G +A + G +I ++A + + ++ +
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIF 62
Query: 254 MPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFTEEP 313
+ ++ + + +VA E + I +
Sbjct: 63 LCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGI 122
Query: 314 PAKDSKLVLHENVTVTPHLGASTTEAQEGVAIEIAEAVIGAL 355
+ L ++ +TP + +V+ L
Sbjct: 123 DGAEENLFVNAPYVLTPTEYTDPE------QLACLRSVLEPL 158
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide
synthetase PurK (AIRC), N-domain {Escherichia coli
[TaxId: 562]}
Length = 78
Score = 30.9 bits (70), Expect = 0.072
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA-DRARATGVGLVSFEEAISTA 247
K + V+G G++G + + + LG+ V A+ V E TA
Sbjct: 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETA 57
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate
ligase MurD {Escherichia coli [TaxId: 562]}
Length = 93
Score = 31.2 bits (70), Expect = 0.081
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHD 222
GK + ++G G G G+ D
Sbjct: 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMD 35
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 83
Score = 30.5 bits (69), Expect = 0.092
Identities = 9/51 (17%), Positives = 22/51 (43%)
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKK 580
D+ GI+ V + + +N++ +S + + + DE+ L+
Sbjct: 11 DKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRN 61
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 70
Score = 29.6 bits (67), Expect = 0.16
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIGET 584
++ G + +V +L N+N++ + + A + D + + + LK
Sbjct: 12 NKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV-SDPDKAYKALKDNHFA 65
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor
VC2159 {Vibrio cholerae [TaxId: 666]}
Length = 86
Score = 29.4 bits (66), Expect = 0.23
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPS---REVLKKIGE 583
D+PGI +V L+ N+ + + +M I L +G+
Sbjct: 14 DRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLLGQ 70
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 71
Score = 28.9 bits (65), Expect = 0.25
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDE-EPSREVLKKIG 582
+ PG + KV L V + +M A A + I + EVLK+
Sbjct: 8 NVPGALAKVLGFLSAEGVFIEYMYS--FANNNVANVVIRPSNMDKCIEVLKEKK 59
>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 29.2 bits (65), Expect = 0.25
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 81 NLSPEELCTKISLCD 95
++ P+E+C + CD
Sbjct: 64 HMQPKEICALVGFCD 78
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 29.8 bits (66), Expect = 0.52
Identities = 6/36 (16%), Positives = 10/36 (27%)
Query: 197 VMGFGKVGTEVARRAKGLGMNVIAHDPYAQADRARA 232
V G + + G NV + D +
Sbjct: 8 VCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQL 43
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide
transformylase PurT, N-domain {Escherichia coli [TaxId:
562]}
Length = 111
Score = 29.1 bits (65), Expect = 0.57
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 192 GKTLAVMGFGKVGTEVARRAKGLGMNVIAHDPYAQA 227
+ ++G G++G EVA + LG+ VIA D YA A
Sbjct: 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor
VC2159 {Vibrio cholerae [TaxId: 666]}
Length = 93
Score = 28.4 bits (63), Expect = 0.66
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 515 VDVSLEGSIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQ 560
V+V +E D+ G+ K + + +S I+
Sbjct: 7 VEVYVESD-------DKLGLTEKFTQFFAQRQIGMASLSAQTISKD 45
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 29.4 bits (65), Expect = 0.70
Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 4/132 (3%)
Query: 195 LAVMGFGKVGTEVARRAKGLGMNVIAHD--PYAQADRARATGVGLVSFEEAISTADFISL 252
+ +G G +G +++ G +++ D P A AD A + + D I
Sbjct: 3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 62
Query: 253 HMPLTPATSKMF--NDEAFFKMKKGVRIVNVARGGVVDEEALVRALDSGIISQAALDVFT 310
+P +P ++ + K G +++++ + + AL + + V
Sbjct: 63 MLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSG 122
Query: 311 EEPPAKDSKLVL 322
EP A D L +
Sbjct: 123 GEPKAIDGTLSV 134
>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide
transhydrogenase dI component {Rhodospirillum rubrum
[TaxId: 1085]}
Length = 183
Score = 29.2 bits (65), Expect = 0.87
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 197 VMGFGKVGTEVARRAKGLGMNVIAHD 222
V G G G + AK LG V+A D
Sbjct: 34 VFGVGVAGLQAIATAKRLGAVVMATD 59
>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 195
Score = 29.3 bits (64), Expect = 0.92
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 60 EKLGEAGLDVLKNFAN 75
EK G+AGL L
Sbjct: 178 EKSGKAGLAFLALARR 193
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin
reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 29.3 bits (64), Expect = 1.3
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 195 LAVMGFGKVGTEVARRAKGLGMNVI 219
L ++G G G A+ A V+
Sbjct: 6 LIIIGGGSGGLAAAKEAAKFDKKVM 30
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter sp.,
py2 [TaxId: 35809]}
Length = 261
Score = 29.2 bits (64), Expect = 1.3
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 195 LAVMGFGKVGTEVARRAKGLGMNV 218
+G G G + + +G
Sbjct: 45 AIFIGGGAAGRFGSAYLRAMGGRQ 68
>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 220
Score = 29.2 bits (64), Expect = 1.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 195 LAVMGFGKVGTEVARRAKGLGMNVI 219
L ++G G G A RA LG+ +
Sbjct: 8 LLIIGGGPGGYVAAIRAGQLGIPTV 32
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit,
IlvH {Nitrosomonas europaea [TaxId: 915]}
Length = 77
Score = 27.3 bits (61), Expect = 1.3
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKI 581
++ G + +V L N+ +SV + MT+ + E++++I
Sbjct: 11 NEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPD--EIVEQI 60
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 132
Score = 28.3 bits (62), Expect = 1.4
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 197 VMGFGKVGTEVARRAKGLGMNVIAHDP 223
+ G G+VG +A+ G +++ D
Sbjct: 5 IAGIGRVGYTLAKSLSEKGHDIVLIDI 31
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 221
Score = 28.7 bits (63), Expect = 1.5
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 195 LAVMGFGKVGTEVARRAKGLGMNV 218
V+G G G ARRA LG
Sbjct: 6 YLVIGGGSGGLASARRAAELGARA 29
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit,
IlvH {Escherichia coli [TaxId: 562]}
Length = 76
Score = 26.9 bits (60), Expect = 1.5
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGV--DEEPSREVLKKI 581
++ G + +V L N+ ++V + MTI DE+ ++ K++
Sbjct: 10 NESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQL 63
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide
dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Length = 229
Score = 28.7 bits (63), Expect = 1.6
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 195 LAVMGFGKVGTEVARRAKGLGMNVI 219
+ V+G G G A A G+ V
Sbjct: 9 VVVLGGGPGGYSAAFAAADEGLKVA 33
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 28.7 bits (63), Expect = 1.6
Identities = 6/24 (25%), Positives = 7/24 (29%)
Query: 195 LAVMGFGKVGTEVARRAKGLGMNV 218
+G G G RA G
Sbjct: 5 YIAIGGGSGGIASINRAAMYGQKC 28
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 239
Score = 29.0 bits (64), Expect = 1.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 189 SLVGKTLAVMGFGKVGTEVARR 210
+L GKT+A+ G+G G +A+
Sbjct: 29 TLKGKTIAIQGYGNAGYYLAKI 50
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase
(KARI) {Pseudomonas aeruginosa [TaxId: 287]}
Length = 182
Score = 28.3 bits (63), Expect = 2.0
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 190 LVGKTLAVMGFGKVGTEVARRAKGLGMNVIA--HDPYAQADRARATGVGLVSFEEAISTA 247
+ GK +A++G+G G A K G++V A +A A G+ + + A++ A
Sbjct: 14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAA 73
Query: 248 DFISLHMPLTPATSKMFNDEAFFKMKKG 275
D + + P +++ +E +KKG
Sbjct: 74 DVVMILTP-DEFQGRLYKEEIEPNLKKG 100
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 223
Score = 28.3 bits (62), Expect = 2.1
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 195 LAVMGFGKVGTEVARRAKGLGMNVI 219
V+G G G A RA LG V
Sbjct: 6 TLVVGAGPGGYVAAIRAAQLGQKVT 30
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal
domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 77
Score = 26.6 bits (59), Expect = 2.3
Identities = 7/64 (10%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSR----EVLKKIGETP 585
++ G++ + +++ + N+ F + + + E ++L+++
Sbjct: 10 NKIGVLRDLTTIIAEEGGNITFAQT-FLIKHGEHEGKALIYFEIEGGDFEKILERVKTFD 68
Query: 586 AIEE 589
I E
Sbjct: 69 YIIE 72
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 26.5 bits (58), Expect = 2.6
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 81 NLSPEELCTKISLC 94
+SPE +C+ + LC
Sbjct: 64 EVSPELVCSMLHLC 77
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 28.1 bits (61), Expect = 3.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 195 LAVMGFGKVGTEVARRAKGLGMNVI 219
+ V+G G G A ++ LG+
Sbjct: 6 VIVIGAGPGGYVAAIKSAQLGLKTA 30
>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
{Plasmodium falciparum [TaxId: 5833]}
Length = 259
Score = 28.1 bits (61), Expect = 3.0
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 195 LAVMGFGKVGTEVARRAKGLGMNV 218
L V+G G G ARRA V
Sbjct: 4 LIVIGGGSGGMAAARRAARHNAKV 27
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II
subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 106
Score = 26.5 bits (58), Expect = 3.3
Identities = 13/95 (13%), Positives = 23/95 (24%), Gaps = 16/95 (16%)
Query: 491 IGDIRVEGRVKDGKPHLTKVGSFGVDVSLEGSIILCRQV---DQPGIIGKVGSLLGDNNV 547
+ ++ +EG V V FG V L L D +
Sbjct: 3 MYEL-IEGEV-------VDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKET 54
Query: 548 NVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKIG 582
+ + + + R+ KI
Sbjct: 55 GKVLEIGDYVR-----ARIVAISLKAERKRGSKIA 84
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 28.1 bits (62), Expect = 3.6
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 239 SFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIV 279
E I D I ++ L ++ K G +I+
Sbjct: 290 RVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKII 330
>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 238
Score = 27.7 bits (60), Expect = 3.6
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 195 LAVMGFGKVGTEVARRAKGLGMNVIA 220
L V+G G G E A A L +A
Sbjct: 6 LVVIGAGSGGLEAAWNAATLYKKRVA 31
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 27.2 bits (59), Expect = 4.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 193 KTLAVMGFGKVGTEVARRAKGLGMNVIAHD 222
KT AV+G G G A G +V+A D
Sbjct: 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWD 31
>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 232
Score = 27.6 bits (60), Expect = 4.3
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 60 EKLGEAGLDVLKNF 73
EK G+AGL+V++NF
Sbjct: 198 EKSGKAGLNVIENF 211
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 221
Score = 27.5 bits (60), Expect = 4.3
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 195 LAVMGFGKVGTEVARRAKGLGMNVI 219
+ ++G G G A +A LG
Sbjct: 6 VVIIGGGPGGYVAAIKAAQLGFKTT 30
>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 27.2 bits (59), Expect = 5.8
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 195 LAVMGFGKVGTEVARRAKGLGMNVI 219
+ ++G G G A +A LG N
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGFNTA 32
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
{Human (Homo sapiens), non-muscle isoform [TaxId: 9606]}
Length = 166
Score = 26.6 bits (58), Expect = 6.6
Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 18/168 (10%)
Query: 232 ATGVGLVSFEEAISTADFISLHMPLTPATSKMFNDEAFFKMKKGVRIVNVARGGVVDEEA 291
A+GV VS + I + + + TP K F + + + + +++E
Sbjct: 2 ASGVA-VS-DGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNI------ILEEGK 53
Query: 292 LVRALDSGIISQAALDVFTEEPPAKDSKLVLHENVTVTPHLGAST----TEAQEGVAIE- 346
+ D G F + P KD + L++ T A E ++
Sbjct: 54 EILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKS 113
Query: 347 --IAEAVIGALKGELAATAVNAPMVPAEVISELAPFVTLAEKLGGLAV 392
I + A+K +L + A E+ TLAEKLGG AV
Sbjct: 114 KMIYASSKDAIKKKLTGIKHE---LQANCYEEVKDRCTLAEKLGGSAV 158
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit,
IlvH {Thermotoga maritima [TaxId: 2336]}
Length = 78
Score = 25.3 bits (56), Expect = 6.7
Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 530 DQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKI 581
++PG++ KV +L N++ ++VG + + I V + + +++I
Sbjct: 12 NKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD--KTIEQI 61
>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus
jannaschii [TaxId: 2190]}
Length = 100
Score = 25.5 bits (56), Expect = 7.6
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 522 SIILCRQVDQPGIIGKVGSLLGDNNVNVNFMSVGRIAPQKQAVMTIGVDEEPSREVLKKI 581
+I V G ++ LG+ VNV +S G + +++ V EE + LK +
Sbjct: 19 NIFGAGMVGVSGTAARIFKALGEEEVNVILISQG----SSETNISLVVSEEDVDKALKAL 74
>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 129
Score = 26.0 bits (56), Expect = 8.0
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 197 VMGFGKVGTEVARRAKGLGMNVIAHDP 223
+ G+ + E R +G + V+A D
Sbjct: 5 ICGWSESTLECLRELRGSEVFVLAEDE 31
>d1vk3a1 d.79.4.1 (A:2-166) Phosphoribosylformylglycinamidine
synthase II, domains 1 and 3 {Thermotoga maritima
[TaxId: 2336]}
Length = 165
Score = 26.2 bits (57), Expect = 8.6
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 263 MFNDEAFFKMKKGVRIVNVARGGVVDEEALVRA 295
+ + + +VNV GVV + LV +
Sbjct: 133 VGGELRISSLYAHNPLVNVLAAGVVRNDMLVDS 165
>d1wo8a1 c.24.1.2 (A:1-126) Methylglyoxal synthase, MgsA {Thermus
thermophilus [TaxId: 274]}
Length = 126
Score = 25.7 bits (56), Expect = 9.2
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 135 ATEHGCLVVNAPTANTIAAAEHGIALLTAMARNIAQ 170
A C V P A + AAE AL+ + + Q
Sbjct: 94 ALMRVCNVHGVPLATNLVAAE---ALIAWIRKGTPQ 126
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.365
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,046,859
Number of extensions: 97099
Number of successful extensions: 394
Number of sequences better than 10.0: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 84
Length of query: 595
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 505
Effective length of database: 1,171,896
Effective search space: 591807480
Effective search space used: 591807480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)