Query 046428
Match_columns 94
No_of_seqs 100 out of 114
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 21:08:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k2d_P MBP peptide, myelin bas 57.7 2.8 9.4E-05 22.2 0.4 11 78-88 10-20 (26)
2 4frf_A Inositol polyphosphate 30.1 13 0.00045 27.8 0.4 15 13-27 226-240 (275)
3 3arc_M Photosystem II reaction 29.1 4.7 0.00016 22.9 -1.7 14 67-80 6-19 (36)
4 1q4k_B Serine/threonine-protei 23.4 17 0.00058 27.5 -0.0 14 80-93 74-87 (259)
5 2l0z_A Glycoprotein G2; zinc-b 22.4 17 0.00058 21.2 -0.2 11 78-88 1-11 (42)
6 2iew_A Inositol polyphosphate 17.4 31 0.001 27.1 0.3 15 15-29 317-331 (363)
7 3qoq_A Alginate and motility r 17.0 1E+02 0.0034 19.1 2.6 28 5-32 10-37 (69)
8 2a98_A Inositol 1,4,5-trisphos 17.0 32 0.0011 26.0 0.3 14 15-28 206-219 (259)
9 2p92_A Hypothetical protein; u 16.0 2.3E+02 0.0079 19.0 4.4 55 14-68 42-111 (126)
10 2keg_A PLNK; protein, peptide, 15.4 35 0.0012 18.5 0.1 9 80-88 3-11 (32)
No 1
>1k2d_P MBP peptide, myelin basic protein peptide with 8 residue linke; MHC class II, I-AU, H-2U, autoimmune disease; HET: NDG NAG; 2.20A {Mus musculus}
Probab=57.69 E-value=2.8 Score=22.19 Aligned_cols=11 Identities=45% Similarity=0.739 Sum_probs=8.9
Q ss_pred cCCCCcccccC
Q 046428 78 FPTRRHGIGYL 88 (94)
Q Consensus 78 FPt~RhGIGyp 88 (94)
-|+.|||-|--
T Consensus 10 rpsqrhg~gsg 20 (26)
T 1k2d_P 10 RPSQRHGTGSG 20 (26)
T ss_pred CccccccCCCC
Confidence 48999998854
No 2
>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol phosphate kinase, transferase; 2.90A {Arabidopsis thaliana}
Probab=30.11 E-value=13 Score=27.82 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=12.4
Q ss_pred ccccceeeecchhhH
Q 046428 13 DLRKYRIRFIDGVHA 27 (94)
Q Consensus 13 ~~s~YrLr~~DfvHA 27 (94)
+.++.++|.|||.|+
T Consensus 226 ~~~~~~vrmIDFAh~ 240 (275)
T 4frf_A 226 DDARPQVKLVDFAHV 240 (275)
T ss_dssp -CCCCEEEEECCTTC
T ss_pred CCCcccEEEEECCCC
Confidence 456789999999996
No 3
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=29.09 E-value=4.7 Score=22.88 Aligned_cols=14 Identities=50% Similarity=1.061 Sum_probs=11.5
Q ss_pred HHHhhhheeeecCC
Q 046428 67 IGLICSLLFVIFPT 80 (94)
Q Consensus 67 vG~~~S~vF~iFPt 80 (94)
.|++++.+|...||
T Consensus 6 l~fiAt~Lfi~iPt 19 (36)
T 3arc_M 6 LGLIATALFVLVPS 19 (36)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 38888999988886
No 4
>1q4k_B Serine/threonine-protein kinase PLK; six-stranded anti-parallel beta sheet with one alpha helix, transferase; HET: TPO; 2.30A {Homo sapiens} SCOP: d.223.1.2 d.223.1.2
Probab=23.38 E-value=17 Score=27.47 Aligned_cols=14 Identities=21% Similarity=0.619 Sum_probs=11.8
Q ss_pred CCCcccccCCCCCC
Q 046428 80 TRRHGIGYLITPGK 93 (94)
Q Consensus 80 t~RhGIGyp~~~~~ 93 (94)
|+++|+||..+.|+
T Consensus 74 SnKYG~GYqLsdgs 87 (259)
T 1q4k_B 74 SDKYGLGYQLCDNS 87 (259)
T ss_dssp TTTTEEEEEETTSC
T ss_pred ccccceeEEecCCc
Confidence 67999999888765
No 5
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=22.38 E-value=17 Score=21.20 Aligned_cols=11 Identities=45% Similarity=0.531 Sum_probs=7.9
Q ss_pred cCCCCcccccC
Q 046428 78 FPTRRHGIGYL 88 (94)
Q Consensus 78 FPt~RhGIGyp 88 (94)
|||.||=+|=+
T Consensus 1 iPTHRHI~Ge~ 11 (42)
T 2l0z_A 1 XPTHRHIRGEA 11 (42)
T ss_dssp -CCEEECSSSS
T ss_pred CCccccccCCC
Confidence 79999977743
No 6
>2iew_A Inositol polyphosphate multikinase; ATP-grAsp fold related, transferase; 2.00A {Saccharomyces cerevisiae} PDB: 2if8_A*
Probab=17.36 E-value=31 Score=27.05 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=12.7
Q ss_pred ccceeeecchhhHHH
Q 046428 15 RKYRIRFIDGVHAVL 29 (94)
Q Consensus 15 s~YrLr~~DfvHA~l 29 (94)
...++|.|||.|+..
T Consensus 317 ~~~~vrmIDFAH~~~ 331 (363)
T 2iew_A 317 SLSSMSLIDFAHSEI 331 (363)
T ss_dssp CCEEEEEECCTTEEE
T ss_pred CcceEEEEeCCCccc
Confidence 368999999999963
No 7
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=17.04 E-value=1e+02 Score=19.05 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=21.3
Q ss_pred eccCCCccccccceeeecchhhHHHHHH
Q 046428 5 AHPRGEILDLRKYRIRFIDGVHAVLSVI 32 (94)
Q Consensus 5 ~~~~~~~~~~s~YrLr~~DfvHA~lS~~ 32 (94)
+||........+|.||+-+-+|.-+...
T Consensus 10 ~~~~~~sr~~~kf~LRlP~eL~~~L~~~ 37 (69)
T 3qoq_A 10 ATPTYSSRTADKFVVRLPEGMREQIAEV 37 (69)
T ss_dssp ---CCCTTTSEEEEEECCTTHHHHHHHH
T ss_pred cCCCcccccCCceEEECCHHHHHHHHHH
Confidence 5677777888899999999999987654
No 8
>2a98_A Inositol 1,4,5-trisphosphate 3-kinase C; structural genomics, structural genomics consortium, SGC, transferase; HET: I3P; 2.60A {Homo sapiens}
Probab=16.98 E-value=32 Score=25.95 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=12.6
Q ss_pred ccceeeecchhhHH
Q 046428 15 RKYRIRFIDGVHAV 28 (94)
Q Consensus 15 s~YrLr~~DfvHA~ 28 (94)
++.++|.+||.|+.
T Consensus 206 ~~~~v~lIDFAh~~ 219 (259)
T 2a98_A 206 GLAKVWMIDFGKTV 219 (259)
T ss_dssp SCEEEEEECCTTEE
T ss_pred CcCcEEEEECCcee
Confidence 58999999999986
No 9
>2p92_A Hypothetical protein; unknown function; HET: MSE; 1.73A {Staphylococcus aureus} SCOP: d.64.2.1
Probab=15.96 E-value=2.3e+02 Score=18.98 Aligned_cols=55 Identities=16% Similarity=0.034 Sum_probs=33.0
Q ss_pred cccceeeecchhhHHHHHHHHHHhHhc--------------cCCccceeCCCC-CccHHHHHHhhhhHHH
Q 046428 14 LRKYRIRFIDGVHAVLSVIVFAAAALR--------------DKNVLSCFFPTP-KHETQEVLDIVPVGIG 68 (94)
Q Consensus 14 ~s~YrLr~~DfvHA~lS~~VF~avAl~--------------D~nvv~Cf~P~~-~~~~~~ll~~lPl~vG 68 (94)
-+.|-=...|.|=|..|++++.++--. +.+-..|-+|.. +++.+-+|+++=++.=
T Consensus 42 HAg~ae~G~DIVCAAVSaL~~~~vn~Le~~~~~~~~~~~~~~~G~l~~~l~~~~~~~~q~Ll~tm~lgL~ 111 (126)
T 2p92_A 42 HADHGEYGHDIVCAGASAVLFGSVNAIIGLTSERPDINYDDNGGHFHIRSVDTNNDEAQLILQTMLVSLQ 111 (126)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHSSCCCEEEEEGGGTEEEEECSCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcEEEehHHHHHHHHHHHHHHHhCCCceEEEecCCcEEEEEEcCCCcHHHHHHHHHHHHHHH
Confidence 344555678999999999999887543 235578999875 4556677887766543
No 10
>2keg_A PLNK; protein, peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2keh_A
Probab=15.40 E-value=35 Score=18.55 Aligned_cols=9 Identities=56% Similarity=1.254 Sum_probs=6.7
Q ss_pred CCCcccccC
Q 046428 80 TRRHGIGYL 88 (94)
Q Consensus 80 t~RhGIGyp 88 (94)
++..||||.
T Consensus 3 srkngigya 11 (32)
T 2keg_A 3 SRKNGIGYA 11 (32)
T ss_dssp SSSSSSHHH
T ss_pred ccccCccee
Confidence 567899883
Done!