Query 046428
Match_columns 94
No_of_seqs 100 out of 114
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 21:08:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046428.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046428hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ogqa1 d.223.1.2 (A:371-494) 42.1 2.5 0.00018 27.5 -0.0 14 80-93 48-61 (124)
2 d2axtm1 f.23.35.1 (M:1-36) Pho 40.6 1.1 8.1E-05 24.2 -1.7 14 67-80 6-19 (36)
3 d1s12a_ d.64.2.1 (A:) Hypothet 35.2 20 0.0014 21.8 3.5 48 21-68 18-75 (94)
4 d2pspa1 g.16.1.1 (A:1-53) Panc 24.6 16 0.0012 20.3 1.5 13 41-53 40-52 (53)
5 d2pspa2 g.16.1.1 (A:54-106) Pa 19.9 22 0.0016 19.6 1.5 15 41-55 36-50 (53)
6 d1e9ta_ g.16.1.1 (A:) Intestin 16.9 26 0.0019 19.6 1.3 14 41-54 42-55 (59)
7 d1w2fa_ d.143.1.3 (A:) Inosito 15.2 17 0.0012 24.9 0.2 16 13-28 221-236 (276)
8 d1ryba_ c.56.3.1 (A:) Chloropl 10.3 25 0.0018 23.7 -0.3 10 78-87 16-25 (191)
9 d1d1da1 a.28.3.1 (A:151-230) R 9.0 41 0.003 19.8 0.5 23 45-67 40-62 (80)
10 d1d6ga_ g.33.1.1 (A:) Cholecys 8.6 99 0.0072 16.8 2.0 23 41-63 23-46 (47)
No 1
>d2ogqa1 d.223.1.2 (A:371-494) Serine/threonine-protein kinase plk C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.05 E-value=2.5 Score=27.45 Aligned_cols=14 Identities=21% Similarity=0.619 Sum_probs=11.7
Q ss_pred CCCcccccCCCCCC
Q 046428 80 TRRHGIGYLITPGK 93 (94)
Q Consensus 80 t~RhGIGyp~~~~~ 93 (94)
|++|||||..+.|.
T Consensus 48 S~KyGlgY~LSdgt 61 (124)
T d2ogqa1 48 SDKYGLGYQLCDNS 61 (124)
T ss_dssp TTTTEEEEEETTSC
T ss_pred CCCceEEEEEcCCc
Confidence 78999999887764
No 2
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=40.59 E-value=1.1 Score=24.17 Aligned_cols=14 Identities=50% Similarity=1.061 Sum_probs=12.3
Q ss_pred HHHhhhheeeecCC
Q 046428 67 IGLICSLLFVIFPT 80 (94)
Q Consensus 67 vG~~~S~vF~iFPt 80 (94)
.|++++.+|++.||
T Consensus 6 Lg~iAt~LFilvPt 19 (36)
T d2axtm1 6 LGLIATALFVLVPS 19 (36)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 48999999999886
No 3
>d1s12a_ d.64.2.1 (A:) Hypothetical protein TM1457 {Thermotoga maritima [TaxId: 2336]}
Probab=35.22 E-value=20 Score=21.79 Aligned_cols=48 Identities=15% Similarity=0.078 Sum_probs=37.6
Q ss_pred ecchhhHHHHHHHHHHhHhcc----------CCccceeCCCCCccHHHHHHhhhhHHH
Q 046428 21 FIDGVHAVLSVIVFAAAALRD----------KNVLSCFFPTPKHETQEVLDIVPVGIG 68 (94)
Q Consensus 21 ~~DfvHA~lS~~VF~avAl~D----------~nvv~Cf~P~~~~~~~~ll~~lPl~vG 68 (94)
..|.|=|..|++++.++--.+ .+-..|-+|..+++.+.+|+++=++.-
T Consensus 18 G~DIVCAaVS~l~~~~vN~l~~~~~~~~~~~~G~l~~~~~~~~~~~q~ll~~m~~gL~ 75 (94)
T d1s12a_ 18 PDKTLCASVSLLTQHVANFLKAEKKAKIKKESGYLKVKFEELENCEVKVLAAMVRSLK 75 (94)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSCCHHHHHHHHHHHHHHH
T ss_pred CCceeehhhHHHHHHHHHHHHHHhCCcEEeeCCEEEEEECCCCHHHHHHHHHHHHHHH
Confidence 469999999999999886443 234788889988888888888766653
No 4
>d2pspa1 g.16.1.1 (A:1-53) Pancreatic spasmolytic polypeptide {Pig (Sus scrofa) [TaxId: 9823]}
Probab=24.65 E-value=16 Score=20.28 Aligned_cols=13 Identities=38% Similarity=0.600 Sum_probs=10.0
Q ss_pred cCCccceeCCCCC
Q 046428 41 DKNVLSCFFPTPK 53 (94)
Q Consensus 41 D~nvv~Cf~P~~~ 53 (94)
+.|+--||||..+
T Consensus 40 ~~~~PwCfyP~~~ 52 (53)
T d2pspa1 40 VPGVPWCFKPLPA 52 (53)
T ss_dssp STTSCSEECCCCC
T ss_pred CCCCCcCcccCCC
Confidence 4577789999865
No 5
>d2pspa2 g.16.1.1 (A:54-106) Pancreatic spasmolytic polypeptide {Pig (Sus scrofa) [TaxId: 9823]}
Probab=19.93 E-value=22 Score=19.60 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=10.9
Q ss_pred cCCccceeCCCCCcc
Q 046428 41 DKNVLSCFFPTPKHE 55 (94)
Q Consensus 41 D~nvv~Cf~P~~~~~ 55 (94)
+.|+--||||....+
T Consensus 36 ~~~~PwCfyp~~~~e 50 (53)
T d2pspa2 36 IPEVPWCFFPMSVED 50 (53)
T ss_dssp STTSCSEECCCCGGG
T ss_pred CCCCCcCccCCCccc
Confidence 567778999986543
No 6
>d1e9ta_ g.16.1.1 (A:) Intestinal trefoil factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.95 E-value=26 Score=19.62 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=9.9
Q ss_pred cCCccceeCCCCCc
Q 046428 41 DKNVLSCFFPTPKH 54 (94)
Q Consensus 41 D~nvv~Cf~P~~~~ 54 (94)
+.|+-.||||..+.
T Consensus 42 ~~~~PwCfyp~~~~ 55 (59)
T d1e9ta_ 42 IPGVPWCFKPLQEA 55 (59)
T ss_dssp CTTSCSSBCCCCCC
T ss_pred CCCCccccccCCcc
Confidence 45667799997654
No 7
>d1w2fa_ d.143.1.3 (A:) Inositol 1,4,5-trisphosphate 3-kinase A, IP3K A {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.23 E-value=17 Score=24.92 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=13.1
Q ss_pred ccccceeeecchhhHH
Q 046428 13 DLRKYRIRFIDGVHAV 28 (94)
Q Consensus 13 ~~s~YrLr~~DfvHA~ 28 (94)
+.++.++|.+||.|+.
T Consensus 221 g~~~~~v~lIDFAh~~ 236 (276)
T d1w2fa_ 221 HCHRAGVWLIDFGKTT 236 (276)
T ss_dssp TTCCEEEEEECCTEEE
T ss_pred CCCcCcEEEEecccce
Confidence 4568999999999954
No 8
>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]}
Probab=10.31 E-value=25 Score=23.65 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=8.0
Q ss_pred cCCCCccccc
Q 046428 78 FPTRRHGIGY 87 (94)
Q Consensus 78 FPt~RhGIGy 87 (94)
+..|||-|||
T Consensus 16 Y~~TRHNiG~ 25 (191)
T d1ryba_ 16 YYGTRHNVGF 25 (191)
T ss_dssp GTTBGGGHHH
T ss_pred ccCCccHHHH
Confidence 3578999997
No 9
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=8.97 E-value=41 Score=19.77 Aligned_cols=23 Identities=17% Similarity=0.547 Sum_probs=19.6
Q ss_pred cceeCCCCCccHHHHHHhhhhHH
Q 046428 45 LSCFFPTPKHETQEVLDIVPVGI 67 (94)
Q Consensus 45 v~Cf~P~~~~~~~~ll~~lPl~v 67 (94)
-.|.+.+..++-|++|+++|-+.
T Consensus 40 ~~L~~qNANpdCk~iLral~~~~ 62 (80)
T d1d1da1 40 IDCFRQKSQPDIQQLIRAAPSTL 62 (80)
T ss_dssp HHHHTTSSCHHHHHHHHTSCTTC
T ss_pred HHHHHHhcCHHHHHHHHhCCCCC
Confidence 46899999999999999998543
No 10
>d1d6ga_ g.33.1.1 (A:) Cholecystokinin A receptor, N-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.60 E-value=99 Score=16.81 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=16.4
Q ss_pred cCCccceeC-CCCCccHHHHHHhh
Q 046428 41 DKNVLSCFF-PTPKHETQEVLDIV 63 (94)
Q Consensus 41 D~nvv~Cf~-P~~~~~~~~ll~~l 63 (94)
+..+.-|+= |.+++++++.++.|
T Consensus 23 eNeT~~Cld~P~psKewq~avqIL 46 (47)
T d1d6ga_ 23 ENETLFCLDQPRPSKEWQPAQVIL 46 (47)
T ss_dssp SSSCCBSCCCCSSCSSHHHHHHSC
T ss_pred ccceEEEcCCCCCchHHhHHHHHh
Confidence 445566765 88888999887753
Done!