BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046429
         (137 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
           From The Malaria Parasite Plasmodium Falciparum
 pdb|3S5I|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
           From The Malaria Parasite Plasmodium Falciparum
 pdb|3S5K|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
           From The Malaria Parasite Plasmodium Falciparum
 pdb|3S5M|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
           From The Malaria Parasite Plasmodium Falciparum
          Length = 1193

 Score = 28.5 bits (62), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 17  KQLRERIDKLNRM-KEQAMKSIKPNSSNNIMDETNNICSNFPVVELKDL 64
           ++L++RI+  N   KEQ +K+ +  S     +E+    + FP++ + DL
Sbjct: 600 QELKKRIENFNEQEKEQVIKNFEELSKYKNAEESPEHLNKFPIISISDL 648


>pdb|2CV6|A Chain A, Crystal Structure Of 8salpha Globulin, The Major Seed
           Storage Protein Of Mungbean
          Length = 424

 Score = 26.2 bits (56), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 77  QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAK 117
           QRNF+  E  +++ E   +V+  +F   G+K+   ++ Q++
Sbjct: 358 QRNFLAGEKDNVISEIPTEVLDVTFPASGEKVQKLIKKQSE 398


>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
           Llpr10.1a From Yellow Lupine
          Length = 155

 Score = 25.8 bits (55), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 13/80 (16%)

Query: 46  MDETNNICSNFPVVELKDLGSSIEVVLISGMQRNFMLYEVISILEEEGAQV--VSASFST 103
           +DE N +  N+ ++  + L  S+E +           YE   +   +G  +  ++  F T
Sbjct: 73  IDEAN-LTYNYSIIGGEGLDESLEKIS----------YESKILPGPDGGSIGKINVKFHT 121

Query: 104 IGDKIFHTVRAQAKISRLGV 123
            GD +  TVR QAK   LG+
Sbjct: 122 KGDVLSETVRDQAKFKGLGL 141


>pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococcus Aureus Fema
          Length = 426

 Score = 25.8 bits (55), Expect = 7.3,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 15  YIKQLRERIDKLNRMKEQAMKSIKPNSSN 43
           YIK+L E  D LN+   +A+K I+    N
Sbjct: 248 YIKELNEERDILNKDLNKALKDIEKRPEN 276


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,258,626
Number of Sequences: 62578
Number of extensions: 108061
Number of successful extensions: 303
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 6
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)