BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046429
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STJ6|BH126_ARATH Transcription factor bHLH126 OS=Arabidopsis thaliana GN=BHLH126
PE=2 SV=1
Length = 221
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 16 IKQLRERIDKLNRMKEQAMKSIKPNSSNNIMDETNNICSNFP-VVELKDLGSSIEVVLIS 74
IK+L R D+L+R Q KS P+ D + + P V ++ S +EVV+ S
Sbjct: 98 IKELSARRDELSRETGQGYKS-NPDPGKTGSD----VGKSEPATVMVQPHVSGLEVVVSS 152
Query: 75 GM--QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLG 122
L +V+ ++E+G +V+S+ + + D++ HT+ Q +++ G
Sbjct: 153 NSSGPEALPLSKVLETIQEKGLEVMSSFTTRVNDRLMHTI--QVEVNSFG 200
>sp|Q9M1K1|ORG2_ARATH Transcription factor ORG2 OS=Arabidopsis thaliana GN=ORG2 PE=1 SV=1
Length = 253
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 15 YIKQLRERIDKLNRMKEQAMKSIKPNSSNNIMD--ETNNICSNFPVVELKDLGSSIEVVL 72
YI +L++++ +L + KE+ + + + D + + S V LG + +V
Sbjct: 119 YIPELQQQVKRLIQKKEEILVRVSGQRDFELYDKQQPKAVASYLSTVSATRLGDNEVMVQ 178
Query: 73 ISGMQ-RNFMLYEVISILEEEGAQVVSASFS-TIGDKIFHTVRAQAK 117
+S + NF + V+ +EE+G +V S S + G+++F+T+ Q +
Sbjct: 179 VSSSKIHNFSISNVLGGIEEDGFVLVDVSSSRSQGERLFYTLHLQVE 225
>sp|Q9STJ7|BH118_ARATH Transcription factor bHLH118 OS=Arabidopsis thaliana GN=BHLH118
PE=2 SV=1
Length = 163
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 4 SQEDRLDLACCYIKQLRERIDKLNRMKEQ-AMKSIKPNSSNNIMDETNNICSNFPVVELK 62
S D++ A YI L+ I +N ++ + S + S+N ++ N SN V+
Sbjct: 38 STSDQVKGAVNYIDYLQRNIKDINSKRDDLVLLSGRSFRSSN--EQEWNEISNHVVIRPC 95
Query: 63 DLGSSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQA 116
+G IE+VL S +Q F V+ +L E G V+ S++ D++ HT++A+
Sbjct: 96 LVG--IEIVL-SILQTPFS--SVLQVLREHGLYVLGYICSSVNDRLIHTLQAEV 144
>sp|Q8U9L9|GLMM_AGRT5 Phosphoglucosamine mutase OS=Agrobacterium tumefaciens (strain C58
/ ATCC 33970) GN=glmM PE=3 SV=2
Length = 450
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 91 EEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRL 132
E+ +V + + T GD + ++ AK+ R G+ S C++
Sbjct: 328 EQSGHIVLSDYGTTGDGLVAALQVLAKVKRSGLTVSEVCRKF 369
>sp|Q11DI7|GLMM_MESSB Phosphoglucosamine mutase OS=Mesorhizobium sp. (strain BNC1)
GN=glmM PE=3 SV=2
Length = 451
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 86 ISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRL 132
++I E+ VV + FST GD + ++ A I RL S C++
Sbjct: 323 LNIGGEQSGHVVLSDFSTSGDGLVTALQVLAHIKRLNKPASEVCRKF 369
>sp|A6TLU4|DNLJ_ALKMQ DNA ligase OS=Alkaliphilus metalliredigens (strain QYMF) GN=ligA
PE=3 SV=1
Length = 660
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 57 PVVELKDLGSSI---EVVLISGMQRNFMLYEVISILEEEGAQVVSA-----SFSTIGDKI 108
P ++K+ SI + V+++G N+ E+ ++LEE+GA+V + F GD
Sbjct: 570 PQHKMKNRQESIFSGKTVVVTGTLENYGRKEIQTLLEEQGAKVSGSISKNTDFVIAGDNA 629
Query: 109 FHTVRAQAKISRLGVETS 126
++ +I GVET+
Sbjct: 630 GSKLKKAQEILESGVETN 647
>sp|B3Q6Y9|GLMM_RHOPT Phosphoglucosamine mutase OS=Rhodopseudomonas palustris (strain
TIE-1) GN=glmM PE=3 SV=1
Length = 450
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 81 MLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135
ML + ++ E ++ + F+T GD ++ A + +LG S C+R L
Sbjct: 317 MLKDGYNVGGESSGHIILSDFNTTGDGFVAALQVLAMVQKLGRPVSEVCRRFDPL 371
>sp|B2IGB3|GLMM_BEII9 Phosphoglucosamine mutase OS=Beijerinckia indica subsp. indica
(strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=glmM PE=3
SV=1
Length = 451
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 91 EEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRL 132
E+ ++ + + T GD + ++ A + RLG S+ C+R
Sbjct: 327 EQSGHIILSDYCTTGDGLVAALQVLALVKRLGKPVSQVCRRF 368
>sp|Q6N1T6|GLMM_RHOPA Phosphoglucosamine mutase OS=Rhodopseudomonas palustris (strain
ATCC BAA-98 / CGA009) GN=glmM PE=3 SV=1
Length = 450
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 81 MLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135
ML + ++ E ++ + F+T GD ++ A + +LG S C R L
Sbjct: 317 MLKDGYNVGGESSGHIILSDFNTTGDGFVAALQVLAMVQKLGRPVSEVCHRFDPL 371
>sp|A7IIG5|GLMM_XANP2 Phosphoglucosamine mutase OS=Xanthobacter autotrophicus (strain
ATCC BAA-1158 / Py2) GN=glmM PE=3 SV=2
Length = 447
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 91 EEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135
E+ ++ + +ST GD + ++ A ++R G S C R L
Sbjct: 327 EQSGHIILSDYSTTGDGLVAALQVLAVVARRGKPVSEVCHRFDPL 371
>sp|Q97E92|GLMU_CLOAB Bifunctional protein GlmU OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=glmU PE=3 SV=1
Length = 456
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 60 ELKDLGSSIEVVLISGMQRNFMLYEVISILEEEGAQV--VSASFSTI 104
++K L S++ + + +Q + L +VI ILEEEGA++ +S F I
Sbjct: 177 DIKSLLESLDKLNNNNVQGEYYLTDVIGILEEEGAKIGAISVPFEEI 223
>sp|A7MBC2|PDXD1_BOVIN Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Bos taurus GN=PDXDC1 PE=2 SV=1
Length = 787
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 20 RERIDKLNRMKEQAMKSIKPNSSNNIMD-ETNNICSNF-PVVELKDLGSSIEVV--LISG 75
R D LNR + +K + P S +MD E C F P++ LG+ E V L++
Sbjct: 423 RHSCDALNRWLGEQLKQLVPMSGLTVMDLEVEGTCVRFSPLMTAAVLGTRGEDVDQLVAC 482
Query: 76 MQRNFMLYEVISILEEEGAQVVSAS 100
+Q + L EE Q V A+
Sbjct: 483 VQSKLPVLTCTLQLREEFKQEVEAT 507
>sp|Q7VRW4|NUON_BLOFL NADH-quinone oxidoreductase subunit N OS=Blochmannia floridanus
GN=nuoN PE=3 SV=1
Length = 504
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 51 NICS--NFPVVELKDLGSSIEVVLISGMQRNFMLYEVISILEEEGA 94
+IC ++PV K + SI+ +++SG+ +F+L+ ++ I + G+
Sbjct: 143 SICGLISYPVFSKKSIELSIKYIILSGVSSSFLLFGIVFIYCKTGS 188
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,897,546
Number of Sequences: 539616
Number of extensions: 1528718
Number of successful extensions: 6273
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 6248
Number of HSP's gapped (non-prelim): 46
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)