Query 046429
Match_columns 137
No_of_seqs 103 out of 139
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 12:01:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04895 ACT_ACR_1 ACT domain-c 97.7 0.00052 1.1E-08 45.7 8.8 63 71-134 4-66 (72)
2 cd04897 ACT_ACR_3 ACT domain-c 97.5 0.0013 2.8E-08 44.1 8.8 66 70-136 3-72 (75)
3 cd04900 ACT_UUR-like_1 ACT dom 97.5 0.0026 5.6E-08 41.4 9.4 64 69-134 3-67 (73)
4 cd04899 ACT_ACR-UUR-like_2 C-t 97.4 0.0029 6.3E-08 40.1 8.9 62 73-135 5-69 (70)
5 cd04925 ACT_ACR_2 ACT domain-c 97.3 0.0041 8.8E-08 40.8 9.3 63 73-136 5-72 (74)
6 cd04927 ACT_ACR-like_2 Second 97.2 0.0055 1.2E-07 40.5 9.0 44 73-116 5-49 (76)
7 cd04896 ACT_ACR-like_3 ACT dom 97.1 0.0067 1.5E-07 40.6 8.5 63 72-136 4-72 (75)
8 cd04926 ACT_ACR_4 C-terminal 97.1 0.01 2.3E-07 38.6 9.0 65 68-135 2-66 (72)
9 cd04893 ACT_GcvR_1 ACT domains 97.0 0.011 2.3E-07 39.1 8.6 61 71-135 4-64 (77)
10 cd04928 ACT_TyrKc Uncharacteri 96.9 0.02 4.3E-07 37.7 9.0 65 69-137 3-68 (68)
11 PF13740 ACT_6: ACT domain; PD 96.8 0.014 3.1E-07 38.3 7.9 59 73-135 7-65 (76)
12 cd04870 ACT_PSP_1 CT domains f 96.7 0.015 3.3E-07 37.9 7.9 61 72-135 3-63 (75)
13 cd04869 ACT_GcvR_2 ACT domains 96.4 0.045 9.9E-07 35.6 8.3 63 72-135 3-69 (81)
14 PRK00194 hypothetical protein; 96.3 0.024 5.1E-07 38.0 6.9 64 70-135 5-68 (90)
15 cd04872 ACT_1ZPV ACT domain pr 96.2 0.027 5.8E-07 37.8 6.7 63 71-135 4-66 (88)
16 PF01842 ACT: ACT domain; Int 96.2 0.06 1.3E-06 33.1 7.9 59 75-136 7-65 (66)
17 cd04873 ACT_UUR-ACR-like ACT d 96.2 0.1 2.2E-06 32.4 9.0 46 73-118 5-50 (70)
18 cd04875 ACT_F4HF-DF N-terminal 96.1 0.066 1.4E-06 34.6 8.0 64 71-135 2-66 (74)
19 PRK03059 PII uridylyl-transfer 96.1 0.059 1.3E-06 50.4 10.5 82 55-136 772-854 (856)
20 PF13291 ACT_4: ACT domain; PD 96.0 0.085 1.8E-06 34.4 8.0 66 67-135 4-72 (80)
21 PRK00275 glnD PII uridylyl-tra 95.9 0.096 2.1E-06 49.2 11.1 82 54-136 799-885 (895)
22 PRK03381 PII uridylyl-transfer 95.9 0.12 2.6E-06 47.8 11.2 80 55-136 586-666 (774)
23 PRK05092 PII uridylyl-transfer 95.7 0.13 2.8E-06 48.5 11.0 82 54-136 828-914 (931)
24 PRK04374 PII uridylyl-transfer 95.7 0.13 2.8E-06 48.2 11.0 82 54-136 781-866 (869)
25 PRK05007 PII uridylyl-transfer 95.6 0.1 2.2E-06 49.0 9.6 80 55-135 794-877 (884)
26 smart00353 HLH helix loop heli 94.9 0.026 5.6E-07 34.2 2.4 22 3-24 31-52 (53)
27 PRK03381 PII uridylyl-transfer 94.7 0.36 7.9E-06 44.7 10.5 78 55-135 693-771 (774)
28 COG2844 GlnD UTP:GlnB (protein 94.2 0.25 5.4E-06 46.2 8.2 79 53-133 775-854 (867)
29 TIGR01693 UTase_glnD [Protein- 94.2 0.57 1.2E-05 43.6 10.8 80 55-136 654-740 (850)
30 cd04887 ACT_MalLac-Enz ACT_Mal 94.2 0.74 1.6E-05 29.1 8.3 59 74-135 5-64 (74)
31 PRK01759 glnD PII uridylyl-tra 94.0 0.39 8.4E-06 45.0 9.3 80 55-135 769-852 (854)
32 TIGR01693 UTase_glnD [Protein- 93.9 0.53 1.2E-05 43.8 10.0 81 55-136 765-849 (850)
33 PRK01759 glnD PII uridylyl-tra 93.9 0.9 1.9E-05 42.6 11.4 80 55-136 663-748 (854)
34 PRK05007 PII uridylyl-transfer 93.8 0.94 2E-05 42.6 11.3 80 55-136 687-772 (884)
35 PRK05092 PII uridylyl-transfer 93.5 1 2.3E-05 42.4 11.2 80 55-135 718-803 (931)
36 cd04888 ACT_PheB-BS C-terminal 93.5 0.67 1.4E-05 29.3 7.1 60 74-135 6-66 (76)
37 cd04886 ACT_ThrD-II-like C-ter 93.2 1.1 2.4E-05 27.3 7.8 56 76-134 6-66 (73)
38 PRK04374 PII uridylyl-transfer 93.2 1.1 2.4E-05 42.2 10.7 80 56-136 676-759 (869)
39 cd00083 HLH Helix-loop-helix d 92.2 0.13 2.7E-06 31.7 2.2 22 3-24 39-60 (60)
40 PF00010 HLH: Helix-loop-helix 92.2 0.14 3E-06 31.4 2.4 18 3-20 38-55 (55)
41 cd04880 ACT_AAAH-PDT-like ACT 92.1 2.1 4.5E-05 27.4 8.3 59 76-134 7-66 (75)
42 PRK00275 glnD PII uridylyl-tra 92.0 2.2 4.8E-05 40.3 11.1 79 56-135 688-776 (895)
43 cd04901 ACT_3PGDH C-terminal A 91.7 0.24 5.1E-06 30.9 3.1 58 72-135 3-60 (69)
44 cd04902 ACT_3PGDH-xct C-termin 91.4 1.1 2.4E-05 27.9 6.1 57 73-135 4-62 (73)
45 cd04876 ACT_RelA-SpoT ACT dom 91.4 1.8 3.9E-05 25.2 7.1 58 75-135 5-63 (71)
46 cd04879 ACT_3PGDH-like ACT_3PG 91.4 1.9 4E-05 26.1 7.0 57 75-135 6-62 (71)
47 cd04882 ACT_Bt0572_2 C-termina 91.1 1.4 3E-05 26.8 6.2 51 76-134 7-59 (65)
48 TIGR00655 PurU formyltetrahydr 91.1 2 4.3E-05 35.3 8.7 63 70-134 2-66 (280)
49 PRK13011 formyltetrahydrofolat 91.1 1.8 3.8E-05 35.6 8.4 61 73-135 12-73 (286)
50 cd02116 ACT ACT domains are co 91.0 1.6 3.5E-05 24.0 6.9 54 76-132 6-59 (60)
51 PRK03059 PII uridylyl-transfer 90.9 3.2 6.9E-05 39.1 10.9 62 56-118 665-729 (856)
52 PRK06027 purU formyltetrahydro 90.7 2.2 4.7E-05 35.1 8.7 61 73-135 11-73 (286)
53 cd04877 ACT_TyrR N-terminal AC 90.7 1.2 2.6E-05 28.6 5.8 56 74-135 6-61 (74)
54 PRK08577 hypothetical protein; 90.7 2.4 5.2E-05 30.7 8.1 59 75-135 63-123 (136)
55 cd04903 ACT_LSD C-terminal ACT 90.4 2.7 5.8E-05 25.5 7.4 55 75-135 6-62 (71)
56 PLN03217 transcription factor 90.1 0.77 1.7E-05 31.8 4.6 33 4-36 46-78 (93)
57 cd04874 ACT_Af1403 N-terminal 89.3 3.4 7.3E-05 25.1 8.0 57 74-134 6-62 (72)
58 PRK04435 hypothetical protein; 88.8 3.7 8E-05 30.4 7.9 73 61-135 61-135 (147)
59 PRK13010 purU formyltetrahydro 87.3 3.8 8.3E-05 33.8 7.8 65 70-135 11-77 (289)
60 PRK11589 gcvR glycine cleavage 87.2 3.9 8.4E-05 31.8 7.5 63 72-135 99-165 (190)
61 cd04905 ACT_CM-PDT C-terminal 85.5 7.7 0.00017 25.1 8.3 43 76-118 9-52 (80)
62 cd04908 ACT_Bt0572_1 N-termina 85.4 6.2 0.00013 24.6 6.5 51 76-134 9-59 (66)
63 PRK07334 threonine dehydratase 85.1 6.8 0.00015 33.3 8.5 67 66-135 323-395 (403)
64 cd04878 ACT_AHAS N-terminal AC 84.2 7 0.00015 23.5 7.3 57 75-135 7-65 (72)
65 cd04884 ACT_CBS C-terminal ACT 83.9 8.4 0.00018 24.3 6.8 28 77-104 8-35 (72)
66 PRK11589 gcvR glycine cleavage 83.9 3.2 6.8E-05 32.3 5.5 59 73-135 13-71 (190)
67 cd04881 ACT_HSDH-Hom ACT_HSDH_ 82.8 7.5 0.00016 23.8 6.1 58 75-135 7-66 (79)
68 PF13710 ACT_5: ACT domain; PD 82.6 6 0.00013 25.1 5.6 58 78-137 2-59 (63)
69 COG3830 ACT domain-containing 80.5 2.9 6.3E-05 29.0 3.7 64 70-135 5-68 (90)
70 cd04889 ACT_PDH-BS-like C-term 79.3 8.9 0.00019 22.8 5.3 41 76-116 6-47 (56)
71 PF08946 Osmo_CC: Osmosensory 77.3 4.3 9.4E-05 24.7 3.3 21 16-36 21-41 (46)
72 COG2844 GlnD UTP:GlnB (protein 76.6 15 0.00033 34.8 8.1 75 59-135 676-751 (867)
73 PRK11092 bifunctional (p)ppGpp 75.4 27 0.00059 32.4 9.5 75 58-135 612-691 (702)
74 COG3074 Uncharacterized protei 74.6 6.3 0.00014 26.3 3.8 29 7-35 11-39 (79)
75 PF05088 Bac_GDH: Bacterial NA 74.3 24 0.00052 35.6 9.3 78 57-136 475-561 (1528)
76 PRK10872 relA (p)ppGpp synthet 74.1 30 0.00064 32.5 9.4 75 58-135 652-732 (743)
77 COG4492 PheB ACT domain-contai 73.5 26 0.00057 26.3 7.3 73 61-135 64-138 (150)
78 PF06005 DUF904: Protein of un 73.3 9.3 0.0002 25.3 4.5 28 6-33 10-37 (72)
79 PF14992 TMCO5: TMCO5 family 70.9 6.8 0.00015 32.5 4.1 25 9-33 146-170 (280)
80 cd04883 ACT_AcuB C-terminal AC 69.7 23 0.0005 21.8 7.8 52 77-134 10-63 (72)
81 PRK09731 putative general secr 69.6 47 0.001 25.7 8.3 96 5-105 60-163 (178)
82 PRK15422 septal ring assembly 68.9 11 0.00023 25.6 4.0 29 7-35 11-39 (79)
83 cd04931 ACT_PAH ACT domain of 68.7 34 0.00074 23.3 7.3 43 76-118 22-65 (90)
84 COG0317 SpoT Guanosine polypho 67.3 26 0.00057 32.6 7.5 76 58-135 613-692 (701)
85 PRK11895 ilvH acetolactate syn 67.0 24 0.00053 26.7 6.1 58 76-137 10-69 (161)
86 PRK00227 glnD PII uridylyl-tra 66.8 43 0.00094 31.1 8.8 69 66-136 545-613 (693)
87 TIGR00119 acolac_sm acetolacta 66.7 25 0.00055 26.5 6.2 58 76-137 9-68 (157)
88 cd04904 ACT_AAAH ACT domain of 66.5 31 0.00068 22.1 6.7 43 76-118 8-51 (74)
89 TIGR00691 spoT_relA (p)ppGpp s 66.4 62 0.0014 29.9 9.7 74 58-134 596-674 (683)
90 KOG3896 Dynactin, subunit p62 65.6 6.6 0.00014 33.7 3.1 28 7-34 139-166 (449)
91 cd04894 ACT_ACR-like_1 ACT dom 65.2 37 0.00079 22.3 7.2 62 74-135 6-67 (69)
92 PRK11152 ilvM acetolactate syn 64.8 36 0.00078 22.6 6.0 58 77-137 12-69 (76)
93 cd04909 ACT_PDH-BS C-terminal 63.2 32 0.0007 21.1 6.3 54 76-134 9-64 (69)
94 PF00170 bZIP_1: bZIP transcri 60.2 17 0.00037 22.8 3.6 23 13-35 25-47 (64)
95 PF08644 SPT16: FACT complex s 60.1 15 0.00033 27.7 3.9 28 6-33 77-104 (152)
96 KOG3856 Uncharacterized conser 59.5 6.9 0.00015 28.9 1.9 28 7-34 3-30 (135)
97 PF13840 ACT_7: ACT domain ; P 57.9 15 0.00032 23.1 3.1 35 77-118 19-53 (65)
98 PF07485 DUF1529: Domain of Un 56.8 45 0.00097 24.2 5.8 53 80-137 68-121 (123)
99 PF14689 SPOB_a: Sensor_kinase 55.9 21 0.00045 22.5 3.5 22 6-27 36-57 (62)
100 PF12548 DUF3740: Sulfatase pr 55.7 18 0.00039 27.1 3.6 24 14-37 113-136 (145)
101 PRK14639 hypothetical protein; 55.4 49 0.0011 24.4 5.9 50 87-137 5-55 (140)
102 cd04868 ACT_AK-like ACT domain 52.8 41 0.00088 18.9 5.3 30 78-107 13-42 (60)
103 cd04892 ACT_AK-like_2 ACT doma 51.6 46 0.001 19.2 5.7 26 78-103 13-38 (65)
104 smart00338 BRLZ basic region l 50.0 30 0.00066 21.6 3.5 23 13-35 25-47 (65)
105 PRK06737 acetolactate synthase 49.8 68 0.0015 21.3 5.3 59 77-137 11-69 (76)
106 cd04885 ACT_ThrD-I Tandem C-te 49.8 61 0.0013 20.1 5.4 29 76-105 6-34 (68)
107 PRK14638 hypothetical protein; 48.7 74 0.0016 23.7 6.0 51 87-137 16-67 (150)
108 PF08826 DMPK_coil: DMPK coile 48.4 49 0.0011 21.2 4.3 28 6-33 31-58 (61)
109 PRK10310 PTS system galactitol 47.3 50 0.0011 22.4 4.5 68 69-136 4-92 (94)
110 CHL00100 ilvH acetohydroxyacid 47.3 1.1E+02 0.0024 23.5 6.9 62 74-137 8-69 (174)
111 KOG2483 Upstream transcription 47.2 30 0.00065 27.9 3.9 26 6-31 97-122 (232)
112 PF06673 L_lactis_ph-MCP: Lact 46.9 19 0.00042 29.1 2.7 25 11-35 15-39 (347)
113 cd04930 ACT_TH ACT domain of t 46.2 1.1E+02 0.0023 21.8 6.3 43 76-118 49-92 (115)
114 PRK14644 hypothetical protein; 45.6 92 0.002 22.8 6.0 48 87-137 6-53 (136)
115 PF14193 DUF4315: Domain of un 45.4 51 0.0011 22.4 4.2 27 8-34 9-35 (83)
116 PRK14646 hypothetical protein; 45.4 1.1E+02 0.0024 22.8 6.5 53 85-137 13-67 (155)
117 PF06305 DUF1049: Protein of u 45.2 24 0.00052 22.0 2.5 19 15-33 49-67 (68)
118 PF15030 DUF4527: Protein of u 45.2 33 0.00071 28.2 3.8 26 7-32 44-69 (277)
119 PF02302 PTS_IIB: PTS system, 44.8 40 0.00088 21.8 3.7 33 70-102 2-37 (90)
120 COG3978 Acetolactate synthase 44.1 93 0.002 21.3 5.3 57 77-136 12-68 (86)
121 KOG4029 Transcription factor H 43.5 17 0.00038 28.5 2.0 24 4-27 146-169 (228)
122 TIGR02338 gimC_beta prefoldin, 43.4 57 0.0012 22.7 4.4 31 5-35 1-31 (110)
123 cd04937 ACT_AKi-DapG-BS_2 ACT 43.2 56 0.0012 20.0 4.0 23 78-100 14-36 (64)
124 cd04919 ACT_AK-Hom3_2 ACT doma 43.1 73 0.0016 19.1 5.8 49 78-134 14-62 (66)
125 PRK09343 prefoldin subunit bet 43.0 57 0.0012 23.3 4.5 32 4-35 4-35 (121)
126 PRK14645 hypothetical protein; 43.0 1.1E+02 0.0023 23.0 6.1 56 82-137 11-69 (154)
127 PRK14640 hypothetical protein; 42.9 1.2E+02 0.0026 22.5 6.3 50 87-137 14-64 (152)
128 PF04977 DivIC: Septum formati 42.7 38 0.00082 21.4 3.2 22 14-35 24-45 (80)
129 COG0788 PurU Formyltetrahydrof 41.4 1.9E+02 0.0041 24.2 7.7 61 72-134 11-73 (287)
130 COG3879 Uncharacterized protei 40.5 1.9E+02 0.0041 23.6 7.5 22 78-99 137-158 (247)
131 PRK14647 hypothetical protein; 40.0 1.6E+02 0.0034 22.0 6.6 50 87-137 16-66 (159)
132 PF06230 DUF1009: Protein of u 39.8 21 0.00045 28.4 1.9 25 77-101 50-74 (214)
133 PF03698 UPF0180: Uncharacteri 38.9 31 0.00066 23.3 2.4 20 81-100 9-28 (80)
134 PF10398 DUF2443: Protein of u 38.9 39 0.00085 22.7 2.8 32 2-33 40-76 (79)
135 cd09238 V_Alix_like_1 Protein- 38.9 56 0.0012 27.3 4.4 32 4-35 185-216 (339)
136 PRK14637 hypothetical protein; 38.9 1.6E+02 0.0035 21.9 6.7 54 82-136 11-65 (151)
137 cd09237 V_ScBro1_like Protein- 38.5 59 0.0013 27.2 4.6 27 9-35 196-222 (356)
138 PF03668 ATP_bind_2: P-loop AT 37.9 49 0.0011 27.5 3.9 30 68-98 1-30 (284)
139 PRK08198 threonine dehydratase 37.8 1.5E+02 0.0032 25.1 6.9 56 76-134 335-395 (404)
140 PRK14630 hypothetical protein; 37.8 1.5E+02 0.0033 21.8 6.2 50 86-136 15-65 (143)
141 PRK14634 hypothetical protein; 37.2 1.6E+02 0.0035 22.0 6.3 50 88-137 16-67 (155)
142 PF09278 MerR-DNA-bind: MerR, 37.0 80 0.0017 19.2 4.0 23 11-33 40-62 (65)
143 cd04918 ACT_AK1-AT_2 ACT domai 36.9 1E+02 0.0022 18.9 5.9 29 78-106 13-41 (65)
144 cd04929 ACT_TPH ACT domain of 35.4 1.3E+02 0.0027 19.6 7.0 43 76-118 8-51 (74)
145 PF07334 IFP_35_N: Interferon- 35.1 95 0.0021 20.9 4.2 27 9-35 2-28 (76)
146 TIGR01127 ilvA_1Cterm threonin 34.9 2.4E+02 0.0052 23.5 7.7 65 67-134 303-373 (380)
147 cd04920 ACT_AKiii-DAPDC_2 ACT 34.8 65 0.0014 19.8 3.3 25 78-102 13-37 (63)
148 PRK14632 hypothetical protein; 34.2 1.5E+02 0.0032 22.6 5.8 49 87-137 16-65 (172)
149 PRK10227 DNA-binding transcrip 34.1 97 0.0021 22.5 4.6 27 9-35 81-107 (135)
150 PRK06382 threonine dehydratase 33.7 2E+02 0.0044 24.4 7.1 56 76-134 338-398 (406)
151 PF08336 P4Ha_N: Prolyl 4-Hydr 33.3 96 0.0021 22.1 4.4 27 9-35 17-43 (134)
152 PRK06835 DNA replication prote 33.1 56 0.0012 27.4 3.5 24 13-36 64-87 (329)
153 cd01282 HTH_MerR-like_sg3 Heli 32.6 1.2E+02 0.0025 21.1 4.6 30 5-34 79-108 (112)
154 TIGR02263 benz_CoA_red_C benzo 32.5 60 0.0013 27.5 3.7 42 66-109 232-273 (380)
155 PF12180 EABR: TSG101 and ALIX 32.4 51 0.0011 19.0 2.2 13 14-26 23-35 (35)
156 TIGR02977 phageshock_pspA phag 32.0 93 0.002 24.2 4.5 30 6-35 112-141 (219)
157 PRK08526 threonine dehydratase 32.0 2.4E+02 0.0052 24.2 7.3 65 67-134 324-394 (403)
158 COG0779 Uncharacterized protei 31.9 1.6E+02 0.0034 22.2 5.5 55 82-137 10-66 (153)
159 PHA03338 US22 family homolog; 31.8 26 0.00057 29.5 1.4 41 94-134 140-183 (344)
160 PHA01750 hypothetical protein 31.8 60 0.0013 21.5 2.7 9 19-27 61-69 (75)
161 PF03791 KNOX2: KNOX2 domain ; 31.1 76 0.0016 19.8 3.0 21 7-27 31-51 (52)
162 PF09969 DUF2203: Uncharacteri 30.8 1.1E+02 0.0024 22.0 4.3 29 8-36 4-32 (120)
163 cd08915 V_Alix_like Protein-in 30.2 92 0.002 25.7 4.4 32 4-35 183-214 (342)
164 KOG3960 Myogenic helix-loop-he 29.4 57 0.0012 27.0 2.9 25 9-33 158-182 (284)
165 PHA02047 phage lambda Rz1-like 29.2 1.2E+02 0.0025 21.5 4.0 27 5-31 39-65 (101)
166 TIGR03527 selenium_YedF seleni 29.2 1.3E+02 0.0028 23.3 4.8 39 59-102 122-160 (194)
167 PF05082 Rop-like: Rop-like; 29.1 59 0.0013 21.3 2.4 19 15-33 3-21 (66)
168 cd04913 ACT_AKii-LysC-BS-like_ 29.0 87 0.0019 18.7 3.2 23 77-99 11-33 (75)
169 cd04915 ACT_AK-Ectoine_2 ACT d 28.9 1.5E+02 0.0032 18.4 5.6 28 76-103 12-39 (66)
170 PF02120 Flg_hook: Flagellar h 28.7 1.6E+02 0.0035 18.7 5.6 46 58-103 28-78 (85)
171 PRK03094 hypothetical protein; 28.3 61 0.0013 22.0 2.5 53 81-134 9-77 (80)
172 PF11853 DUF3373: Protein of u 28.2 43 0.00094 29.9 2.1 19 15-33 32-50 (489)
173 PF04012 PspA_IM30: PspA/IM30 28.2 1.2E+02 0.0025 23.3 4.4 30 7-36 112-141 (221)
174 PLN00066 PsbP domain-containin 28.1 1.2E+02 0.0026 24.9 4.6 35 80-114 174-215 (262)
175 PF00804 Syntaxin: Syntaxin; 27.9 1.5E+02 0.0033 19.1 4.4 29 7-35 7-35 (103)
176 cd04871 ACT_PSP_2 ACT domains 27.6 70 0.0015 21.1 2.7 58 74-135 5-72 (84)
177 PRK10698 phage shock protein P 27.3 1.3E+02 0.0027 23.8 4.5 30 7-36 113-142 (222)
178 cd01109 HTH_YyaN Helix-Turn-He 27.2 1.4E+02 0.0031 20.5 4.3 25 9-33 81-105 (113)
179 PRK14641 hypothetical protein; 27.0 2.6E+02 0.0056 21.4 6.0 46 91-137 21-67 (173)
180 PF14282 FlxA: FlxA-like prote 26.9 98 0.0021 21.6 3.4 22 13-34 18-39 (106)
181 PF06971 Put_DNA-bind_N: Putat 26.3 56 0.0012 20.0 1.9 20 81-100 13-32 (50)
182 PHA02114 hypothetical protein 26.3 98 0.0021 22.2 3.3 22 78-99 94-115 (127)
183 PF13094 CENP-Q: CENP-Q, a CEN 25.6 1E+02 0.0022 22.7 3.5 28 9-36 57-84 (160)
184 cd04785 HTH_CadR-PbrR-like Hel 25.6 1.7E+02 0.0037 20.6 4.6 27 9-35 81-107 (126)
185 cd05565 PTS_IIB_lactose PTS_II 25.6 70 0.0015 22.2 2.4 28 69-96 2-31 (99)
186 PTZ00324 glutamate dehydrogena 25.5 5.8E+02 0.013 25.1 9.1 79 55-134 215-299 (1002)
187 PRK11898 prephenate dehydratas 25.4 3.4E+02 0.0074 22.1 6.8 41 78-118 207-248 (283)
188 PF02576 DUF150: Uncharacteris 25.4 2.6E+02 0.0057 20.1 6.4 50 87-137 4-54 (141)
189 PF10612 Spore-coat_CotZ: Spor 25.3 66 0.0014 24.5 2.4 18 8-25 14-31 (156)
190 COG1849 Uncharacterized protei 25.3 84 0.0018 21.8 2.7 23 7-29 5-27 (90)
191 TIGR00853 pts-lac PTS system, 25.1 68 0.0015 21.8 2.3 28 69-96 5-34 (95)
192 PF04568 IATP: Mitochondrial A 24.9 99 0.0021 21.7 3.1 18 14-31 64-82 (100)
193 cd04906 ACT_ThrD-I_1 First of 24.6 2.1E+02 0.0045 18.6 7.0 54 77-134 10-64 (85)
194 TIGR02043 ZntR Zn(II)-responsi 24.4 1.7E+02 0.0036 20.9 4.3 28 9-36 83-110 (131)
195 COG2605 Predicted kinase relat 24.4 2E+02 0.0043 24.5 5.3 41 66-110 291-331 (333)
196 KOG1318 Helix loop helix trans 24.3 1.1E+02 0.0024 26.8 3.8 20 9-28 275-294 (411)
197 PRK14633 hypothetical protein; 24.3 3E+02 0.0065 20.4 6.4 49 86-137 11-61 (150)
198 COG4424 Uncharacterized protei 24.1 49 0.0011 26.8 1.6 20 3-22 123-142 (250)
199 PF13399 LytR_C: LytR cell env 24.1 2.1E+02 0.0045 18.6 4.5 34 67-100 3-36 (90)
200 COG1695 Predicted transcriptio 24.1 1.7E+02 0.0037 20.6 4.4 33 78-112 43-78 (138)
201 TIGR02051 MerR Hg(II)-responsi 24.1 1.9E+02 0.0041 20.3 4.6 29 7-35 76-104 (124)
202 cd04891 ACT_AK-LysC-DapG-like_ 23.9 1.5E+02 0.0032 16.7 5.5 26 77-102 10-35 (61)
203 PF13601 HTH_34: Winged helix 23.7 1.7E+02 0.0036 19.2 3.9 33 78-112 27-61 (80)
204 PF10815 ComZ: ComZ; InterPro 23.6 79 0.0017 20.0 2.1 17 9-25 7-23 (56)
205 TIGR02044 CueR Cu(I)-responsiv 23.6 1.8E+02 0.0039 20.5 4.3 27 9-35 81-107 (127)
206 PF12646 DUF3783: Domain of un 23.6 82 0.0018 19.5 2.3 27 69-96 2-28 (58)
207 PF08965 DUF1870: Domain of un 23.4 1.1E+02 0.0025 22.1 3.3 18 18-35 46-63 (118)
208 PF13606 Ank_3: Ankyrin repeat 23.3 54 0.0012 17.4 1.2 14 83-96 15-28 (30)
209 COG0347 GlnK Nitrogen regulato 23.3 72 0.0016 23.0 2.2 17 78-94 9-25 (112)
210 COG2185 Sbm Methylmalonyl-CoA 23.2 66 0.0014 24.1 2.0 34 65-98 61-96 (143)
211 cd04770 HTH_HMRTR Helix-Turn-H 23.1 1.9E+02 0.004 20.1 4.3 27 9-35 81-107 (123)
212 smart00596 PRE_C2HC PRE_C2HC d 23.0 1E+02 0.0022 20.4 2.6 24 83-106 2-25 (69)
213 PF01166 TSC22: TSC-22/dip/bun 22.9 1.7E+02 0.0038 18.7 3.6 29 9-37 16-44 (59)
214 PRK13562 acetolactate synthase 22.9 2.5E+02 0.0055 19.0 4.8 59 77-137 11-70 (84)
215 cd05564 PTS_IIB_chitobiose_lic 22.8 82 0.0018 21.3 2.4 35 70-104 2-40 (96)
216 PF10393 Matrilin_ccoil: Trime 22.8 1.9E+02 0.0041 17.6 4.1 24 10-33 19-42 (47)
217 PF04508 Pox_A_type_inc: Viral 22.7 1.1E+02 0.0024 15.9 2.3 14 16-29 3-16 (23)
218 TIGR02047 CadR-PbrR Cd(II)/Pb( 22.6 1.9E+02 0.0041 20.5 4.3 24 12-35 84-107 (127)
219 COG3416 Uncharacterized protei 22.6 96 0.0021 25.0 2.9 21 9-29 57-77 (233)
220 COG1608 Predicted archaeal kin 22.6 85 0.0019 25.7 2.7 31 81-111 82-115 (252)
221 PF03979 Sigma70_r1_1: Sigma-7 22.5 49 0.0011 21.8 1.1 19 80-98 39-57 (82)
222 PRK14011 prefoldin subunit alp 22.3 1.7E+02 0.0037 21.7 4.1 10 8-17 85-94 (144)
223 cd04784 HTH_CadR-PbrR Helix-Tu 22.2 2E+02 0.0042 20.2 4.3 24 12-35 84-107 (127)
224 KOG3088 Secretory carrier memb 21.8 78 0.0017 26.6 2.4 28 10-37 60-87 (313)
225 PRK14631 hypothetical protein; 21.3 3.8E+02 0.0082 20.5 6.1 51 87-137 16-84 (174)
226 COG1591 Holliday junction reso 21.3 3.1E+02 0.0066 20.5 5.2 47 83-129 11-69 (137)
227 cd04890 ACT_AK-like_1 ACT doma 21.3 1.9E+02 0.0042 17.1 4.5 35 78-114 13-47 (62)
228 cd00584 Prefoldin_alpha Prefol 21.2 2.1E+02 0.0046 20.0 4.4 22 8-29 84-109 (129)
229 PF02996 Prefoldin: Prefoldin 21.2 2E+02 0.0044 19.6 4.2 26 9-34 75-104 (120)
230 PF13713 BRX_N: Transcription 21.0 1.6E+02 0.0034 17.3 2.9 19 11-29 9-27 (39)
231 cd09236 V_AnPalA_UmRIM20_like 20.9 2E+02 0.0042 24.1 4.7 32 4-35 185-216 (353)
232 cd04776 HTH_GnyR Helix-Turn-He 20.9 2.1E+02 0.0046 20.0 4.2 26 10-35 83-108 (118)
233 COG1422 Predicted membrane pro 20.8 2E+02 0.0044 22.8 4.4 25 10-34 82-111 (201)
234 PF09849 DUF2076: Uncharacteri 20.8 84 0.0018 25.5 2.3 14 16-29 57-70 (247)
235 COG4747 ACT domain-containing 20.7 2.1E+02 0.0046 21.2 4.2 37 70-106 3-41 (142)
236 PRK00092 ribosome maturation p 20.5 3.5E+02 0.0077 19.8 6.0 50 87-137 15-65 (154)
237 cd01106 HTH_TipAL-Mta Helix-Tu 20.4 2.3E+02 0.0049 19.1 4.2 25 9-33 75-99 (103)
238 PF13600 DUF4140: N-terminal d 20.4 1.5E+02 0.0031 20.0 3.2 18 16-33 72-89 (104)
239 cd04914 ACT_AKi-DapG-BS_1 ACT 20.4 2.1E+02 0.0045 17.8 3.7 21 77-97 11-33 (67)
240 TIGR01270 Trp_5_monoox tryptop 20.2 3.6E+02 0.0078 24.1 6.3 45 74-118 37-83 (464)
241 PF02542 YgbB: YgbB family; I 20.0 1.7E+02 0.0038 22.2 3.8 28 78-105 73-100 (157)
No 1
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.70 E-value=0.00052 Score=45.65 Aligned_cols=63 Identities=11% Similarity=0.193 Sum_probs=49.9
Q ss_pred EEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 71 VLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 71 ~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
+-+.+.++++.|++|.++|.+.|++|.+|..++.|+++.-+++-.=..+. .++-....++|++
T Consensus 4 iev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~-kl~d~~~~~~l~~ 66 (72)
T cd04895 4 VKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGN-KLTDDSLIAYIEK 66 (72)
T ss_pred EEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCC-CCCCHHHHHHHHH
Confidence 34567789999999999999999999999999999999999988754432 4544444555544
No 2
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.53 E-value=0.0013 Score=44.10 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=51.8
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccch----HHHHHHHhhhh
Q 046429 70 VVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVET----SRACQRLHDLV 136 (137)
Q Consensus 70 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~----~~l~~rL~~~i 136 (137)
|+-+.+.++|++|++|.++|-+.|++|.+|..++.|+++.=+++-.=.++. .+.. .++.++|.+.+
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~-kl~~~~~~~~l~~~L~~al 72 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGR-TLSTEGERQRVIKCLEAAI 72 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCC-ccCCHHHHHHHHHHHHHHH
Confidence 334567889999999999999999999999999999999999998766543 4433 44555555543
No 3
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.45 E-value=0.0026 Score=41.40 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=45.9
Q ss_pred EEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEee-CCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 69 EVVLISGMQRNFMLYEVISILEEEGAQVVSASFSTI-GDKIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 69 eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
+|.+ ++.+++++|+++-.+|...|++|++|...+. +++++=+++-.=... ..++.+.-.++|++
T Consensus 3 ~i~v-~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~-~~~~~~~~~~~l~~ 67 (73)
T cd04900 3 EVFI-YTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDG-EPIGERERLARIRE 67 (73)
T ss_pred EEEE-EecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCC-CCCChHHHHHHHHH
Confidence 4544 4558999999999999999999999997655 789999988763332 23443444444443
No 4
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.40 E-value=0.0029 Score=40.06 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=47.5
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccch---HHHHHHHhhh
Q 046429 73 ISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVET---SRACQRLHDL 135 (137)
Q Consensus 73 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~---~~l~~rL~~~ 135 (137)
+.+.++++.|.++..+|.+.|++++++.....+++.+-+++.+-.... ..+. .+++++|.+.
T Consensus 5 v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~-~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 5 LTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQ-PLDPERQEALRAALGEA 69 (70)
T ss_pred EEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCC-cCCHHHHHHHHHHHHhh
Confidence 355678999999999999999999999998888899999998875543 2332 2355555543
No 5
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.33 E-value=0.0041 Score=40.80 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=47.3
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeec-cCcccc----hHHHHHHHhhhh
Q 046429 73 ISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKI-SRLGVE----TSRACQRLHDLV 136 (137)
Q Consensus 73 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~-~~~~~d----~~~l~~rL~~~i 136 (137)
+.+.+++++|++|-.+|.+.|++|++|..++.|++++-+++-.-.+ .. .++ ..++.+.|.+.+
T Consensus 5 v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~-~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 5 LTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGA-PIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred EEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCC-CCCCHHHHHHHHHHHHHHh
Confidence 4566899999999999999999999999988899999999865322 21 232 345555555543
No 6
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.22 E-value=0.0055 Score=40.51 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=39.3
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEE-eeCCeEEEEEEEEe
Q 046429 73 ISGMQRNFMLYEVISILEEEGAQVVSASFS-TIGDKIFHTVRAQA 116 (137)
Q Consensus 73 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s-~~~~r~fhtIh~qv 116 (137)
+.+.++++.|+++..+|.+.|++|.+|..+ +.|++++-+++-+=
T Consensus 5 i~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d 49 (76)
T cd04927 5 LFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITD 49 (76)
T ss_pred EEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeC
Confidence 455689999999999999999999999987 49999999998864
No 7
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.10 E-value=0.0067 Score=40.65 Aligned_cols=63 Identities=17% Similarity=0.321 Sum_probs=49.7
Q ss_pred EEecCCCcccHHHHHHHHHHcCceEEEeEEE--eeCCeEEEEEEEEeeccCccc-c---hHHHHHHHhhhh
Q 046429 72 LISGMQRNFMLYEVISILEEEGAQVVSASFS--TIGDKIFHTVRAQAKISRLGV-E---TSRACQRLHDLV 136 (137)
Q Consensus 72 l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s--~~~~r~fhtIh~qv~~~~~~~-d---~~~l~~rL~~~i 136 (137)
-+.+.++++.|++|.++|.+.|++|.+|..+ +.|+++.=+|+-.-.+ . .+ | ...|.++|.+.+
T Consensus 4 ev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g-~-kl~d~~~~~~L~~~L~~~l 72 (75)
T cd04896 4 QIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDG-K-KIMDPKKQAALCARLREEM 72 (75)
T ss_pred EEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCC-C-ccCCHHHHHHHHHHHHHHh
Confidence 3567789999999999999999999999999 9999999998884332 2 23 3 356677776654
No 8
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.06 E-value=0.01 Score=38.56 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=47.1
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 68 IEVVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 68 ~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
.+|.+. ..+++++|+++..+|.+.|++|++|.....+++.+-+++.+=.+.. .++. ...+++++.
T Consensus 2 tri~V~-~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~-~~~~-~~~~~l~~~ 66 (72)
T cd04926 2 VRLELR-TEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGN-PVDP-KTIEAVRQE 66 (72)
T ss_pred eEEEEE-ECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCC-cCCH-HHHHHHHHH
Confidence 355553 3478999999999999999999999987778888888887643322 2443 445566554
No 9
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.97 E-value=0.011 Score=39.08 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=52.6
Q ss_pred EEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 71 VLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 71 ~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
+.++|.++++..++|-..|.+.|+++++++....+++.|..+...+.. .+.+.|.++|..+
T Consensus 4 ltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~----~~~~~l~~~l~~~ 64 (77)
T cd04893 4 ISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW----DAIAKLEAALPGL 64 (77)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc----ccHHHHHHHHHHH
Confidence 345777899999999999999999999999999999999999998762 3678888888765
No 10
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.86 E-value=0.02 Score=37.67 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=53.4
Q ss_pred EEEEEecCCCcccHHHHHHHHHHcCceEEEeEE-EeeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 046429 69 EVVLISGMQRNFMLYEVISILEEEGAQVVSASF-STIGDKIFHTVRAQAKISRLGVETSRACQRLHDLVD 137 (137)
Q Consensus 69 eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~-s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~i~ 137 (137)
+|.+.+ .+++.+|+++-.+|...|++|++|.. +..++.++-+++-+=.+ +=|...+.++|.+.++
T Consensus 3 eI~V~~-~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~---~~~~~~~~~~~~~~~~ 68 (68)
T cd04928 3 EITFAA-GDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWK---RGETAALGHALQKEID 68 (68)
T ss_pred EEEEEE-CCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCC---ccchHHHHHHHHHhhC
Confidence 565544 48899999999999999999999986 57889999998777433 6788999999988764
No 11
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.78 E-value=0.014 Score=38.31 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=48.6
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 73 ISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 73 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
+.|.++++.++++..+|.+.|+++++++.++.+++.--.++.++.. -+.++|...|.++
T Consensus 7 v~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~----~~~~~l~~~L~~l 65 (76)
T PF13740_consen 7 VVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPE----DSLERLESALEEL 65 (76)
T ss_dssp EEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESH----HHHHHHHHHHHHH
T ss_pred EEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCc----ccHHHHHHHHHHH
Confidence 4677899999999999999999999999999999988888888863 2668888888765
No 12
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.74 E-value=0.015 Score=37.88 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=51.1
Q ss_pred EEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 72 LISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 72 l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
-+.|.++++...++-++|.+.|+++.+.+.++.++. +++...+.-+. +.+.++|.+.|..+
T Consensus 3 tv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~--f~~~~~v~~p~-~~~~~~l~~~l~~l 63 (75)
T cd04870 3 TVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGR--LSLGILVQIPD-SADSEALLKDLLFK 63 (75)
T ss_pred EEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCe--eEEEEEEEcCC-CCCHHHHHHHHHHH
Confidence 356888999999999999999999999998888765 56677777665 57789999988775
No 13
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.37 E-value=0.045 Score=35.55 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=48.4
Q ss_pred EEecCCCcccHHHHHHHHHHcCceEEEeEEEeeC----CeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 72 LISGMQRNFMLYEVISILEEEGAQVVSASFSTIG----DKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 72 l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~----~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
-+.+.++++.+++|-+.|.+.|+++.+.+....+ +.-.+.+.+++..+. +.+..++.+.|..+
T Consensus 3 ~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~l 69 (81)
T cd04869 3 EVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEEL 69 (81)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHHH
Confidence 3567789999999999999999999999998776 223444445555544 67889999888765
No 14
>PRK00194 hypothetical protein; Validated
Probab=96.33 E-value=0.024 Score=38.01 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=50.0
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 70 VVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 70 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
++.+.+.++++.+++|.++|-+.|+++++.+....++..+-.+-+.... ...+.+.+.+.|.++
T Consensus 5 ~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~l~~l 68 (90)
T PRK00194 5 IITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISE--SKKDFAELKEELEEL 68 (90)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecC--CCCCHHHHHHHHHHH
Confidence 3446777899999999999999999999999887777666656666543 246678888888765
No 15
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.22 E-value=0.027 Score=37.76 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=50.4
Q ss_pred EEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 71 VLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 71 ~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
+.+.|.++++.+++|-+.|-+.|+++++.+..+.+++.+-.+.+.... .+.+.++|.+.|.++
T Consensus 4 l~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~--~~~~~~~L~~~l~~l 66 (88)
T cd04872 4 ITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE--SNLDFAELQEELEEL 66 (88)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC--CCCCHHHHHHHHHHH
Confidence 345677899999999999999999999999887777766666666542 256778999888765
No 16
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.21 E-value=0.06 Score=33.09 Aligned_cols=59 Identities=20% Similarity=0.107 Sum_probs=43.5
Q ss_pred cCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhhh
Q 046429 75 GMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDLV 136 (137)
Q Consensus 75 ~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~i 136 (137)
..++++.|+++..+|.++|++|.++.....++.....+-+...+ .-+...+.++|+++.
T Consensus 7 ~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 7 VPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---EEDLEKLLEELEALP 65 (66)
T ss_dssp EETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---GHGHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---CCCHHHHHHHHHccc
Confidence 34789999999999999999999999887766322222223322 356688889888764
No 17
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.19 E-value=0.1 Score=32.40 Aligned_cols=46 Identities=17% Similarity=0.280 Sum_probs=36.9
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeec
Q 046429 73 ISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKI 118 (137)
Q Consensus 73 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~ 118 (137)
+.+.++++.|+++..+|.+.|+.+.++.....+++..-.++..-..
T Consensus 5 i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~ 50 (70)
T cd04873 5 VYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD 50 (70)
T ss_pred EEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence 3556789999999999999999999999877666666666665543
No 18
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.13 E-value=0.066 Score=34.56 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=46.9
Q ss_pred EEEecCCCcccHHHHHHHHHHcCceEEEeEEEe-eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 71 VLISGMQRNFMLYEVISILEEEGAQVVSASFST-IGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 71 ~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~-~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
+.+.|.++++.+++|-+.|-+.|+++++.+..+ .++..|+. .+++..+....+...+.+.|.++
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~-~~~~~~~~~~~~~~~l~~~l~~l 66 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFM-RVEFELEGFDLSREALEAAFAPV 66 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEE-EEEEEeCCCCCCHHHHHHHHHHH
Confidence 345677899999999999999999999998875 34444444 55555442125678888888765
No 19
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.10 E-value=0.059 Score=50.35 Aligned_cols=82 Identities=20% Similarity=0.211 Sum_probs=58.0
Q ss_pred CCCeEEEEEcC-CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHh
Q 046429 55 NFPVVELKDLG-SSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLH 133 (137)
Q Consensus 55 ~~p~V~V~~~~-~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~ 133 (137)
..|.|.+.... .+.-++.+.+.+++++|++|-.+|.+.|++|.+|..++.|++++=+++-+-.+..-.-...++.++|.
T Consensus 772 ~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~ 851 (856)
T PRK03059 772 ITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELL 851 (856)
T ss_pred CCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 45677776543 34445556677899999999999999999999999988899999999874222110112356666666
Q ss_pred hhh
Q 046429 134 DLV 136 (137)
Q Consensus 134 ~~i 136 (137)
+.+
T Consensus 852 ~~L 854 (856)
T PRK03059 852 DAL 854 (856)
T ss_pred HHh
Confidence 554
No 20
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=95.96 E-value=0.085 Score=34.42 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=50.4
Q ss_pred eeEEEE-EecCCCcccHHHHHHHHHHcCceEEEeEEEe--eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 67 SIEVVL-ISGMQRNFMLYEVISILEEEGAQVVSASFST--IGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 67 ~~eV~l-~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~--~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
.+.+.+ +.+.+.++.|.+|..++.++|+.+.+.+... .++...-+|..+|.+. -++..+-++|+++
T Consensus 4 ~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~---~~L~~ii~~L~~i 72 (80)
T PF13291_consen 4 SFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDL---EHLNQIIRKLRQI 72 (80)
T ss_dssp -EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSH---HHHHHHHHHHCTS
T ss_pred EEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCH---HHHHHHHHHHHCC
Confidence 344444 4556789999999999999999999999876 4788888999999764 4567777777754
No 21
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.94 E-value=0.096 Score=49.21 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=62.0
Q ss_pred CCCCeEEEEEcCC-eeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccch----HHH
Q 046429 54 SNFPVVELKDLGS-SIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVET----SRA 128 (137)
Q Consensus 54 ~~~p~V~V~~~~~-~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~----~~l 128 (137)
...|.|.+....+ +.-++.+++.++++.|++|-.+|.+.|++|++|..++.|++++=+++-.-.++. .++. .++
T Consensus 799 ~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~-~l~~~~~~~~l 877 (895)
T PRK00275 799 AFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQ-PLSDPQLCSRL 877 (895)
T ss_pred CCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCC-CCCCHHHHHHH
Confidence 3457888876543 555556778899999999999999999999999998889999999988754433 2322 446
Q ss_pred HHHHhhhh
Q 046429 129 CQRLHDLV 136 (137)
Q Consensus 129 ~~rL~~~i 136 (137)
.++|.+.+
T Consensus 878 ~~~L~~~L 885 (895)
T PRK00275 878 QDAICEQL 885 (895)
T ss_pred HHHHHHHH
Confidence 66666544
No 22
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.85 E-value=0.12 Score=47.80 Aligned_cols=80 Identities=16% Similarity=0.101 Sum_probs=61.5
Q ss_pred CCCeEEEEEc-CCeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHh
Q 046429 55 NFPVVELKDL-GSSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLH 133 (137)
Q Consensus 55 ~~p~V~V~~~-~~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~ 133 (137)
..|.|.++.. .++.+|.+ .+.++++.|++|..+|...|++|++|...+.|+.++=++...-.... ..+.+++.+.|.
T Consensus 586 ~~~~v~~~~~~~~~~~V~V-~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~-~~~~~~l~~~L~ 663 (774)
T PRK03381 586 GGVHVEIAPADPHMVEVTV-VAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGS-PPDAALLRQDLR 663 (774)
T ss_pred CCCEEEEeeCCCCeEEEEE-EecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCC-cchHHHHHHHHH
Confidence 3567777543 46777755 56689999999999999999999999987788898888888754432 355678888887
Q ss_pred hhh
Q 046429 134 DLV 136 (137)
Q Consensus 134 ~~i 136 (137)
+++
T Consensus 664 ~~L 666 (774)
T PRK03381 664 RAL 666 (774)
T ss_pred HHH
Confidence 664
No 23
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.72 E-value=0.13 Score=48.45 Aligned_cols=82 Identities=17% Similarity=0.264 Sum_probs=62.9
Q ss_pred CCCCeEEEEEcCC-eeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCccc-c---hHHH
Q 046429 54 SNFPVVELKDLGS-SIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGV-E---TSRA 128 (137)
Q Consensus 54 ~~~p~V~V~~~~~-~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~-d---~~~l 128 (137)
...|.|.+....+ +.-++.+.+.++++.|++|..+|.+.|++|.+|..++.|+++.=+++..-.++. .+ + ..+|
T Consensus 828 ~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~-~i~~~~~~~~l 906 (931)
T PRK05092 828 HVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGL-KITNEARQAAI 906 (931)
T ss_pred CCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCC-cCCCHHHHHHH
Confidence 3457888876543 444555678889999999999999999999999999999999999998764433 22 2 3457
Q ss_pred HHHHhhhh
Q 046429 129 CQRLHDLV 136 (137)
Q Consensus 129 ~~rL~~~i 136 (137)
+++|.+++
T Consensus 907 ~~~L~~~L 914 (931)
T PRK05092 907 RRALLAAL 914 (931)
T ss_pred HHHHHHHh
Confidence 77777665
No 24
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.71 E-value=0.13 Score=48.25 Aligned_cols=82 Identities=16% Similarity=0.179 Sum_probs=61.4
Q ss_pred CCCCeEEEEEcC-CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccc---hHHHH
Q 046429 54 SNFPVVELKDLG-SSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVE---TSRAC 129 (137)
Q Consensus 54 ~~~p~V~V~~~~-~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d---~~~l~ 129 (137)
..+|.|.+.... .+.-++-+.+.++++.|++|-.+|.+.|++|.+|..++.|+++.-+++-+=.++. .++ ...|.
T Consensus 781 ~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~-~~~~~~~~~l~ 859 (869)
T PRK04374 781 RFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDR-PLSESARQALR 859 (869)
T ss_pred CCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCC-cCChHHHHHHH
Confidence 345778887644 3556666778889999999999999999999999999889999999998754433 232 24555
Q ss_pred HHHhhhh
Q 046429 130 QRLHDLV 136 (137)
Q Consensus 130 ~rL~~~i 136 (137)
++|.+.+
T Consensus 860 ~~L~~~l 866 (869)
T PRK04374 860 DALCACL 866 (869)
T ss_pred HHHHHHh
Confidence 5555443
No 25
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.57 E-value=0.1 Score=49.02 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=59.2
Q ss_pred CCCeEEEEEcC-CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccc---hHHHHH
Q 046429 55 NFPVVELKDLG-SSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVE---TSRACQ 130 (137)
Q Consensus 55 ~~p~V~V~~~~-~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d---~~~l~~ 130 (137)
..|.|.+..-. +..-|+-+.+.+.++.|++|.++|.+.|++|.+|..++.|+|+.=+++-+=..+. -++ ...|.+
T Consensus 794 ~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~-~l~~~~~~~l~~ 872 (884)
T PRK05007 794 VPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRR-ALNEELQQELRQ 872 (884)
T ss_pred CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCC-cCCHHHHHHHHH
Confidence 45678876543 3445555778899999999999999999999999999999999999888644322 355 234555
Q ss_pred HHhhh
Q 046429 131 RLHDL 135 (137)
Q Consensus 131 rL~~~ 135 (137)
+|.+.
T Consensus 873 ~L~~~ 877 (884)
T PRK05007 873 RLTEA 877 (884)
T ss_pred HHHHH
Confidence 55444
No 26
>smart00353 HLH helix loop helix domain.
Probab=94.85 E-value=0.026 Score=34.22 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=19.3
Q ss_pred CChhhhHHHHHHHHHHHHHHHH
Q 046429 3 LSQEDRLDLACCYIKQLRERID 24 (137)
Q Consensus 3 ~s~~d~l~eA~~YIk~Lq~kve 24 (137)
++-.+.|.+|++||++|+++++
T Consensus 31 ~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 31 LSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 4667889999999999999876
No 27
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.70 E-value=0.36 Score=44.70 Aligned_cols=78 Identities=18% Similarity=0.180 Sum_probs=57.9
Q ss_pred CCCeEEEEEcCC-eeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHh
Q 046429 55 NFPVVELKDLGS-SIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLH 133 (137)
Q Consensus 55 ~~p~V~V~~~~~-~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~ 133 (137)
..|.|.+....+ +.-++-+.+.++++.|++|-.+|.+.|++|.+|..++.|++++=+++-+=.+.. .+.-. .+.|+
T Consensus 693 ~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~-~~~~~--~~~l~ 769 (774)
T PRK03381 693 APPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGG-PLADA--RAAVE 769 (774)
T ss_pred CCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCC-cCchH--HHHHH
Confidence 346777765543 455556677889999999999999999999999999889999999988754432 33222 55555
Q ss_pred hh
Q 046429 134 DL 135 (137)
Q Consensus 134 ~~ 135 (137)
+.
T Consensus 770 ~~ 771 (774)
T PRK03381 770 QA 771 (774)
T ss_pred HH
Confidence 43
No 28
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.25 Score=46.23 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=60.7
Q ss_pred CCCCCeEEEEEcCCe-eEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHH
Q 046429 53 CSNFPVVELKDLGSS-IEVVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQR 131 (137)
Q Consensus 53 ~~~~p~V~V~~~~~~-~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~r 131 (137)
....|.|++.+..+. .-++-+.+++.++.|+++-.+|.+.|+++.+|..+++|.|+--++.-+..... .+ ...+++.
T Consensus 775 f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~-~l-~~~~~q~ 852 (867)
T COG2844 775 FPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQ-AL-NAELRQS 852 (867)
T ss_pred eccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccc-cC-CHHHHHH
Confidence 345688999876543 44445678899999999999999999999999999999998888887776543 44 3445554
Q ss_pred Hh
Q 046429 132 LH 133 (137)
Q Consensus 132 L~ 133 (137)
|.
T Consensus 853 l~ 854 (867)
T COG2844 853 LL 854 (867)
T ss_pred HH
Confidence 44
No 29
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.23 E-value=0.57 Score=43.63 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=56.7
Q ss_pred CCCeEEEEE-c-CCeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEE-eeCCeEEEEEEEEeeccCcccchH----H
Q 046429 55 NFPVVELKD-L-GSSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFS-TIGDKIFHTVRAQAKISRLGVETS----R 127 (137)
Q Consensus 55 ~~p~V~V~~-~-~~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s-~~~~r~fhtIh~qv~~~~~~~d~~----~ 127 (137)
..|.|.+.. . .++.+| .+.+.++++.|++|..+|...|++|++|..+ +.|++++=+++.+-.... .++.+ +
T Consensus 654 ~~~~v~~~~~~~~~~t~i-~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~-~~~~~~~~~~ 731 (850)
T TIGR01693 654 GGPLALIDGTRPSGGTEV-FIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGS-PPAAERVFQE 731 (850)
T ss_pred CCCEEEEeccCCCCeEEE-EEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCC-CCCcHHHHHH
Confidence 356676643 2 344445 4556688999999999999999999999875 789999998888765543 34333 3
Q ss_pred HHHHHhhhh
Q 046429 128 ACQRLHDLV 136 (137)
Q Consensus 128 l~~rL~~~i 136 (137)
+.+.|.+.+
T Consensus 732 i~~~L~~~L 740 (850)
T TIGR01693 732 LLQGLVDVL 740 (850)
T ss_pred HHHHHHHHH
Confidence 555555543
No 30
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.15 E-value=0.74 Score=29.10 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=43.7
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEee-CCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 74 SGMQRNFMLYEVISILEEEGAQVVSASFSTI-GDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 74 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
...++++.|.++..++.++|+++.+.+.... ++.....+..++.+. -.+.++-.+|+++
T Consensus 5 ~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~---~~l~~i~~~L~~i 64 (74)
T cd04887 5 ELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSE---EHAETIVAAVRAL 64 (74)
T ss_pred EeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCH---HHHHHHHHHHhcC
Confidence 3457889999999999999999999887654 355555566666553 3457777777754
No 31
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=94.05 E-value=0.39 Score=45.01 Aligned_cols=80 Identities=15% Similarity=0.137 Sum_probs=59.2
Q ss_pred CCCeEEEEEcC-CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccc---hHHHHH
Q 046429 55 NFPVVELKDLG-SSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVE---TSRACQ 130 (137)
Q Consensus 55 ~~p~V~V~~~~-~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d---~~~l~~ 130 (137)
.+|.|.+..-. +..-|+-+.+.+.++.|++|.++|.+.|++|.+|..++.|+|+.=+++-.=..+. -++ ...|.+
T Consensus 769 ~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~-~l~~~~~~~l~~ 847 (854)
T PRK01759 769 VKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQ-ALDEEERKALKS 847 (854)
T ss_pred CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCC-cCChHHHHHHHH
Confidence 45677776543 4555655778899999999999999999999999999999999988887644322 233 245555
Q ss_pred HHhhh
Q 046429 131 RLHDL 135 (137)
Q Consensus 131 rL~~~ 135 (137)
+|.+.
T Consensus 848 ~L~~~ 852 (854)
T PRK01759 848 RLLSN 852 (854)
T ss_pred HHHHH
Confidence 55543
No 32
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=93.93 E-value=0.53 Score=43.85 Aligned_cols=81 Identities=22% Similarity=0.222 Sum_probs=61.4
Q ss_pred CCCeEEEEEcCC-eeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccc---hHHHHH
Q 046429 55 NFPVVELKDLGS-SIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVE---TSRACQ 130 (137)
Q Consensus 55 ~~p~V~V~~~~~-~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d---~~~l~~ 130 (137)
..|.|.+....+ ..-++-+.+.++++.|++|.++|.+.|++|.+|++++.+++..-+++.+-.... -++ ...|.+
T Consensus 765 ~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~-~~~~~~~~~l~~ 843 (850)
T TIGR01693 765 VPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGL-KLTDEEEQRLLE 843 (850)
T ss_pred CCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCC-CCCHHHHHHHHH
Confidence 456788876554 456666788899999999999999999999999999999999999988765432 222 345555
Q ss_pred HHhhhh
Q 046429 131 RLHDLV 136 (137)
Q Consensus 131 rL~~~i 136 (137)
+|.+.+
T Consensus 844 ~L~~~l 849 (850)
T TIGR01693 844 VLAASV 849 (850)
T ss_pred HHHHHh
Confidence 555443
No 33
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.88 E-value=0.9 Score=42.61 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=56.9
Q ss_pred CCCeEEEEEcC--CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEE-EeeCCeEEEEEEEEeeccCcccchH---HH
Q 046429 55 NFPVVELKDLG--SSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASF-STIGDKIFHTVRAQAKISRLGVETS---RA 128 (137)
Q Consensus 55 ~~p~V~V~~~~--~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~-s~~~~r~fhtIh~qv~~~~~~~d~~---~l 128 (137)
..|.|.+.... ++.+|. +.+.++++.|++|..+|...|++|++|.. |..++.++=+++..=.++. .++.+ +|
T Consensus 663 ~~~~V~i~~~~~~~~t~V~-V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~-~~~~~~~~~l 740 (854)
T PRK01759 663 GDLLVKISNRFSRGGTEIF-IYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGK-LLEFDRRRQL 740 (854)
T ss_pred CCCEEEEEecCCCCeEEEE-EEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCC-CCCHHHHHHH
Confidence 35777776543 455554 45568899999999999999999999996 5599999999988754432 34432 34
Q ss_pred HHHHhhhh
Q 046429 129 CQRLHDLV 136 (137)
Q Consensus 129 ~~rL~~~i 136 (137)
.+.|.+.+
T Consensus 741 ~~~L~~aL 748 (854)
T PRK01759 741 EQALTKAL 748 (854)
T ss_pred HHHHHHHH
Confidence 55555543
No 34
>PRK05007 PII uridylyl-transferase; Provisional
Probab=93.77 E-value=0.94 Score=42.63 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=55.7
Q ss_pred CCCeEEEEEcC--CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEE-eeCCeEEEEEEEEeeccCcccch---HHH
Q 046429 55 NFPVVELKDLG--SSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFS-TIGDKIFHTVRAQAKISRLGVET---SRA 128 (137)
Q Consensus 55 ~~p~V~V~~~~--~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s-~~~~r~fhtIh~qv~~~~~~~d~---~~l 128 (137)
..|.|.+.... ++.+|.+ ++.++++.|++|..+|...|++|++|... ..+|+++=+++..-.++. .++. .++
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V-~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~-~~~~~~~~~I 764 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFI-WSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGS-PLSQDRHQVI 764 (884)
T ss_pred CCCeEEEEecCCCCeEEEEE-EecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCC-CCCHHHHHHH
Confidence 45777787543 4566644 56688999999999999999999999865 566699777776654432 2332 335
Q ss_pred HHHHhhhh
Q 046429 129 CQRLHDLV 136 (137)
Q Consensus 129 ~~rL~~~i 136 (137)
.+.|.+.+
T Consensus 765 ~~~L~~aL 772 (884)
T PRK05007 765 RKALEQAL 772 (884)
T ss_pred HHHHHHHH
Confidence 66665543
No 35
>PRK05092 PII uridylyl-transferase; Provisional
Probab=93.54 E-value=1 Score=42.45 Aligned_cols=80 Identities=18% Similarity=0.190 Sum_probs=56.1
Q ss_pred CCCeEEEEEcC--CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEE-eeCCeEEEEEEEEeeccCcccc---hHHH
Q 046429 55 NFPVVELKDLG--SSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFS-TIGDKIFHTVRAQAKISRLGVE---TSRA 128 (137)
Q Consensus 55 ~~p~V~V~~~~--~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s-~~~~r~fhtIh~qv~~~~~~~d---~~~l 128 (137)
..|.|.++... ++.+|.+++ .++++.|+++..+|...|++|++|... ..|++++=++..+-......-+ ..+|
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~-~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l 796 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLA-ADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARL 796 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEe-CCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHH
Confidence 45778777643 577776654 488999999999999999999999965 5788888878765433221112 3455
Q ss_pred HHHHhhh
Q 046429 129 CQRLHDL 135 (137)
Q Consensus 129 ~~rL~~~ 135 (137)
.+.|.++
T Consensus 797 ~~~L~~~ 803 (931)
T PRK05092 797 AKAIEDA 803 (931)
T ss_pred HHHHHHH
Confidence 5566554
No 36
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.47 E-value=0.67 Score=29.33 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=41.3
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEee-CCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 74 SGMQRNFMLYEVISILEEEGAQVVSASFSTI-GDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 74 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
...++++.|.+++.+|.++|+++...+.+.. ++ ..++.+.+.-....-...++-++|+++
T Consensus 6 ~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~--~~~i~~~v~v~~~~~~l~~l~~~L~~i 66 (76)
T cd04888 6 LLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHG--RANVTISIDTSTMNGDIDELLEELREI 66 (76)
T ss_pred EecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCC--eEEEEEEEEcCchHHHHHHHHHHHhcC
Confidence 3456789999999999999999999877543 34 344444443333223568888888764
No 37
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.25 E-value=1.1 Score=27.34 Aligned_cols=56 Identities=13% Similarity=0.184 Sum_probs=38.9
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEee-----CCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFSTI-----GDKIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-----~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
.++++.|.+++.+|.++|+++.+..+... ++...-.+..++.+ .-+...+-++|++
T Consensus 6 ~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~---~~~l~~l~~~l~~ 66 (73)
T cd04886 6 PDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRG---AEHIEEIIAALRE 66 (73)
T ss_pred CCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCC---HHHHHHHHHHHHH
Confidence 46899999999999999999998887643 24444445555532 2344577777654
No 38
>PRK04374 PII uridylyl-transferase; Provisional
Probab=93.18 E-value=1.1 Score=42.19 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=56.3
Q ss_pred CCeEEEE---EcCCeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEE-EeeCCeEEEEEEEEeeccCcccchHHHHHH
Q 046429 56 FPVVELK---DLGSSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASF-STIGDKIFHTVRAQAKISRLGVETSRACQR 131 (137)
Q Consensus 56 ~p~V~V~---~~~~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~-s~~~~r~fhtIh~qv~~~~~~~d~~~l~~r 131 (137)
.|.|.+. +..++.+|.+.+ .+++++|+++--+|...|++|++|.. |..+|.++=|++..-......-...++.+.
T Consensus 676 ~~~v~~~~~~~~~~~~~v~v~~-~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~ 754 (869)
T PRK04374 676 QTLVKARRAVPDNDALEVFVYS-PDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAA 754 (869)
T ss_pred CCeEEEeeeccCCCeEEEEEEe-CCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHH
Confidence 4555553 345778886654 47899999999999999999999986 568999999998864433211223445555
Q ss_pred Hhhhh
Q 046429 132 LHDLV 136 (137)
Q Consensus 132 L~~~i 136 (137)
|.+.+
T Consensus 755 l~~~l 759 (869)
T PRK04374 755 LRQVL 759 (869)
T ss_pred HHHHH
Confidence 55543
No 39
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=92.21 E-value=0.13 Score=31.67 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=18.4
Q ss_pred CChhhhHHHHHHHHHHHHHHHH
Q 046429 3 LSQEDRLDLACCYIKQLRERID 24 (137)
Q Consensus 3 ~s~~d~l~eA~~YIk~Lq~kve 24 (137)
++-...|..|++||+.||+.++
T Consensus 39 ~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 39 LSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred CCHHHHHHHHHHHHHHHHHHhC
Confidence 4567789999999999998763
No 40
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=92.18 E-value=0.14 Score=31.42 Aligned_cols=18 Identities=50% Similarity=0.554 Sum_probs=15.8
Q ss_pred CChhhhHHHHHHHHHHHH
Q 046429 3 LSQEDRLDLACCYIKQLR 20 (137)
Q Consensus 3 ~s~~d~l~eA~~YIk~Lq 20 (137)
+|-.+.|..|+.||++||
T Consensus 38 ~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 38 LSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 466788999999999998
No 41
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=92.07 E-value=2.1 Score=27.36 Aligned_cols=59 Identities=8% Similarity=-0.013 Sum_probs=40.2
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEeeCC-eEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFSTIGD-KIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~-r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
.++++.|++|+.+|.+.|+.+.+--+.-..+ .--|.+..++....-..+...+-++|++
T Consensus 7 ~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 7 KNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred CCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999997664443 5557766666542112333455555554
No 42
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=91.95 E-value=2.2 Score=40.27 Aligned_cols=79 Identities=8% Similarity=0.089 Sum_probs=56.5
Q ss_pred CCeEEEEEcC-----CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEE-EeeCCeEEEEEEEEeeccCccc-ch---
Q 046429 56 FPVVELKDLG-----SSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASF-STIGDKIFHTVRAQAKISRLGV-ET--- 125 (137)
Q Consensus 56 ~p~V~V~~~~-----~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~-s~~~~r~fhtIh~qv~~~~~~~-d~--- 125 (137)
.|.|.+++.. ++.+|.+. +.++++.|+++..+|...|++|++|.. |..+|.++=+++.+-.++.... +.
T Consensus 688 ~~~v~~~~~~~~~~~~~t~V~V~-~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~ 766 (895)
T PRK00275 688 GPLVLIKETTQREFEGGTQIFIY-APDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARI 766 (895)
T ss_pred CCeEEEEecCccCCCCeEEEEEE-eCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHH
Confidence 4666676543 56777554 558899999999999999999999985 7788899999888765543212 22
Q ss_pred HHHHHHHhhh
Q 046429 126 SRACQRLHDL 135 (137)
Q Consensus 126 ~~l~~rL~~~ 135 (137)
.++.+.|.+.
T Consensus 767 ~~i~~~L~~~ 776 (895)
T PRK00275 767 EQIREGLTEA 776 (895)
T ss_pred HHHHHHHHHH
Confidence 2355555554
No 43
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=91.68 E-value=0.24 Score=30.88 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=40.6
Q ss_pred EEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 72 LISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 72 l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
++...++++.|.++..+|.++|+.+.+.+....++..+-.+...+. +...+-++|+++
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~------~l~~li~~l~~~ 60 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE------VSEELLEALRAI 60 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC------CCHHHHHHHHcC
Confidence 3455678999999999999999999776544334454444444443 567888888763
No 44
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=91.41 E-value=1.1 Score=27.93 Aligned_cols=57 Identities=16% Similarity=0.266 Sum_probs=41.8
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEe--eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 73 ISGMQRNFMLYEVISILEEEGAQVVSASFST--IGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 73 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~--~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
+...+.++.+.++.++|.++|+.+.+...+. -+++.+..++.+... ...+-++|++.
T Consensus 4 v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~------~~~~~~~l~~~ 62 (73)
T cd04902 4 VRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPV------PDEVLEELRAL 62 (73)
T ss_pred EEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCC------CHHHHHHHHcC
Confidence 3456789999999999999999998887654 457777777665522 24666777653
No 45
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=91.39 E-value=1.8 Score=25.24 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=39.6
Q ss_pred cCCCcccHHHHHHHHHHcCceEEEeEEEeeC-CeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 75 GMQRNFMLYEVISILEEEGAQVVSASFSTIG-DKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 75 ~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
..++++.+.++.+.|.++|+++.+......+ +.....+...+.. ..+...+.++|..+
T Consensus 5 ~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~ 63 (71)
T cd04876 5 AIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD---LEHLARIMRKLRQI 63 (71)
T ss_pred EeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC---HHHHHHHHHHHhCC
Confidence 3457889999999999999999998876554 3333333333322 34567777777653
No 46
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=91.36 E-value=1.9 Score=26.06 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=39.6
Q ss_pred cCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 75 GMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 75 ~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
..+.+++|.++..+|.++|+.+.+..+...+..-++.+...+.. . ....+-++|+++
T Consensus 6 ~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~-~---~~~~l~~~l~~~ 62 (71)
T cd04879 6 HKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS-P---VPEEVLEELKAL 62 (71)
T ss_pred ecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC-C---CCHHHHHHHHcC
Confidence 34578999999999999999999998765431123334444533 2 356888888764
No 47
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.10 E-value=1.4 Score=26.82 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=34.7
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEeeC--CeEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFSTIG--DKIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~--~r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
.++++.|.+++.+|.++|+.+.+....... +.....++.+ . ..++.+.|++
T Consensus 7 ~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve--~------~~~~~~~L~~ 59 (65)
T cd04882 7 PDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTE--D------IEKAIEVLQE 59 (65)
T ss_pred CCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeC--C------HHHHHHHHHH
Confidence 358999999999999999999877654332 4444444433 2 3566666654
No 48
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=91.07 E-value=2 Score=35.26 Aligned_cols=63 Identities=16% Similarity=0.314 Sum_probs=47.5
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeC--CeEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 70 VVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIG--DKIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 70 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~--~r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
|+.+.|.++++..+.|=..|-+.|+++++.+.+.-. ++.| +..++..+...++.+.+.+.|.+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~--mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFF--MRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEE--EEEEEEeCCCCCCHHHHHHHHHH
Confidence 344567789999999999999999999999988754 4444 44555543334677888888876
No 49
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=91.05 E-value=1.8 Score=35.64 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=49.7
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEe-eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 73 ISGMQRNFMLYEVISILEEEGAQVVSASFST-IGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 73 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~-~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
+.|.++++...+|-+.|-+.|+++.+.+..+ .++..|+ +.+++..+. +.+.+.|++.|.++
T Consensus 12 v~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~-m~~~~~~p~-~~~~~~L~~~L~~l 73 (286)
T PRK13011 12 LSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFF-MRVEFHSEE-GLDEDALRAGFAPI 73 (286)
T ss_pred EEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEE-EEEEEecCC-CCCHHHHHHHHHHH
Confidence 4577899999999999999999999999874 4556666 577886544 67789999998875
No 50
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=90.98 E-value=1.6 Score=23.99 Aligned_cols=54 Identities=22% Similarity=0.199 Sum_probs=34.6
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHH
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRL 132 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL 132 (137)
.+++..|.+++.+|.++|+.+........++.-...+...+.... +..++.++|
T Consensus 6 ~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l 59 (60)
T cd02116 6 PDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG---DLEKLLEAL 59 (60)
T ss_pred cCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH---HHHHHHHHh
Confidence 346789999999999999999999876544221222233333211 455666555
No 51
>PRK03059 PII uridylyl-transferase; Provisional
Probab=90.93 E-value=3.2 Score=39.05 Aligned_cols=62 Identities=13% Similarity=0.230 Sum_probs=50.1
Q ss_pred CCeEEEEEc--CCeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEE-EeeCCeEEEEEEEEeec
Q 046429 56 FPVVELKDL--GSSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASF-STIGDKIFHTVRAQAKI 118 (137)
Q Consensus 56 ~p~V~V~~~--~~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~-s~~~~r~fhtIh~qv~~ 118 (137)
.|.|.++.. .++.+|.+.| .+++++|+++--+|...|++|++|.. +..+|.++=|++.+-..
T Consensus 665 ~~~v~~~~~~~~~~~~v~i~~-~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~ 729 (856)
T PRK03059 665 TPIVRARLSPAGEGLQVMVYT-PDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPE 729 (856)
T ss_pred CCeEEEEecCCCCeEEEEEEe-cCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCC
Confidence 465557653 4677886654 48899999999999999999999986 67899999999887544
No 52
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=90.74 E-value=2.2 Score=35.06 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=46.5
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEe--eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 73 ISGMQRNFMLYEVISILEEEGAQVVSASFST--IGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 73 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~--~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
+.|.++++...+|-++|-+.|+++.+.+.++ .++. .++..++.-..-..+.++|.+.|.++
T Consensus 11 v~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~--F~m~i~v~~~~~~~~~~~L~~~L~~l 73 (286)
T PRK06027 11 LSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGR--FFMRVEFEGDGLIFNLETLRADFAAL 73 (286)
T ss_pred EECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCe--EEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4577899999999999999999999999998 7773 44445554311135578888888765
No 53
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=90.70 E-value=1.2 Score=28.65 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=39.7
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 74 SGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 74 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
.+.++++.|.+|..++.++|+.+.+..+..- +.++ +..++.+ --+++.+-.||+++
T Consensus 6 ~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~--l~i~v~~---~~~L~~li~~L~~i 61 (74)
T cd04877 6 TCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIY--LNFPTIE---FEKLQTLMPEIRRI 61 (74)
T ss_pred EEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEE--EEeEecC---HHHHHHHHHHHhCC
Confidence 4457889999999999999999999998653 3322 3334443 23567788887754
No 54
>PRK08577 hypothetical protein; Provisional
Probab=90.70 E-value=2.4 Score=30.68 Aligned_cols=59 Identities=14% Similarity=0.245 Sum_probs=42.2
Q ss_pred cCCCcccHHHHHHHHHHcCceEEEeEEEeeC-CeEEE-EEEEEeeccCcccchHHHHHHHhhh
Q 046429 75 GMQRNFMLYEVISILEEEGAQVVSASFSTIG-DKIFH-TVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 75 ~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~r~fh-tIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
..+.++.|.++..+|.++|+++.+.++.... +..++ .+...+.+. ..+.+.+.++|+++
T Consensus 63 ~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~--~~~l~~l~~~L~~l 123 (136)
T PRK08577 63 VEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS--DIDLEELEEELKKL 123 (136)
T ss_pred EcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc--hhhHHHHHHHHHcC
Confidence 4567899999999999999999998876544 44333 234455442 24668888888764
No 55
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.37 E-value=2.7 Score=25.47 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=38.9
Q ss_pred cCCCcccHHHHHHHHHHcCceEEEeEEEee--CCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 75 GMQRNFMLYEVISILEEEGAQVVSASFSTI--GDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 75 ~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~--~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
..+.++.|.++...|.++|+.+.+...... ++..+.. ..+... +...+-++|+++
T Consensus 6 ~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~~----~~~~~i~~l~~~ 62 (71)
T cd04903 6 HKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQP----IDEEVIEEIKKI 62 (71)
T ss_pred eCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCCC----CCHHHHHHHHcC
Confidence 346788999999999999999998876542 2333322 455442 667888888764
No 56
>PLN03217 transcription factor ATBS1; Provisional
Probab=90.10 E-value=0.77 Score=31.76 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=28.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046429 4 SQEDRLDLACCYIKQLRERIDKLNRMKEQAMKS 36 (137)
Q Consensus 4 s~~d~l~eA~~YIk~Lq~kve~L~~kk~~L~~~ 36 (137)
|-+-.+-|+.+||+.|+..|+.|.++=-+|+..
T Consensus 46 saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 46 SAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556678899999999999999999987787754
No 57
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.34 E-value=3.4 Score=25.14 Aligned_cols=57 Identities=7% Similarity=0.070 Sum_probs=38.0
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 74 SGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 74 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
...+.++.|++++..|.++|+.+.+......++..+ .+...+... -....+.++|++
T Consensus 6 ~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~-~~~i~~~~~---~~~~~~~~~L~~ 62 (72)
T cd04874 6 IAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKA-RIYMELEGV---GDIEELVEELRS 62 (72)
T ss_pred EeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeE-EEEEEEecc---ccHHHHHHHHhC
Confidence 345678999999999999999999887654432222 233455432 244577777765
No 58
>PRK04435 hypothetical protein; Provisional
Probab=88.77 E-value=3.7 Score=30.41 Aligned_cols=73 Identities=14% Similarity=0.204 Sum_probs=50.3
Q ss_pred EEEcCCeeEEEEE-ecCCCcccHHHHHHHHHHcCceEEEeEEEe-eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 61 LKDLGSSIEVVLI-SGMQRNFMLYEVISILEEEGAQVVSASFST-IGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 61 V~~~~~~~eV~l~-s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~-~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
.+....|=.+.+. ...+.++.|++|+.+|.++|++|..-+.+. .++...-+|-.++.+. ..+...+-++|+++
T Consensus 61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~--~~~L~~Li~~L~~i 135 (147)
T PRK04435 61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM--EGDIDELLEKLRNL 135 (147)
T ss_pred ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh--HHHHHHHHHHHHcC
Confidence 3333334444442 234578999999999999999999988764 4566666666666543 35678888888764
No 59
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=87.32 E-value=3.8 Score=33.78 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=48.3
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEE--eeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 70 VVLISGMQRNFMLYEVISILEEEGAQVVSASFS--TIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 70 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s--~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
|+.+.|.++++....|=..|-|.|+++++.+.. ...+..|=.+........ .++.+.+.+.|.++
T Consensus 11 iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~-~~~~~~l~~~l~~l 77 (289)
T PRK13010 11 VLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAE-AASVDTFRQEFQPV 77 (289)
T ss_pred EEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCC-CCCHHHHHHHHHHH
Confidence 344567789999999999999999999999985 455566644443332222 67889999888765
No 60
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=87.25 E-value=3.9 Score=31.77 Aligned_cols=63 Identities=6% Similarity=0.068 Sum_probs=53.7
Q ss_pred EEecCCCcccHHHHHHHHHHcCceEEEeEEEee----CCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 72 LISGMQRNFMLYEVISILEEEGAQVVSASFSTI----GDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 72 l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~----~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
-+.|.++++.+++|-++|-+.|+++.+-++.+. .+.-.|.+++++.-+. +.+...|++.|.++
T Consensus 99 ~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~-~~~~~~L~~~l~~l 165 (190)
T PRK11589 99 QVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA-SQDAANIEQAFKAL 165 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC-CCCHHHHHHHHHHH
Confidence 346888999999999999999999999887654 4677888999998875 88889999988876
No 61
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=85.51 E-value=7.7 Score=25.08 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=34.4
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEee-CCeEEEEEEEEeec
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFSTI-GDKIFHTVRAQAKI 118 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-~~r~fhtIh~qv~~ 118 (137)
.++++.|++++.+|.++|+.+.+-.+.-. ++.--|.++.+...
T Consensus 9 ~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~ 52 (80)
T cd04905 9 PNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEG 52 (80)
T ss_pred CCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEEC
Confidence 35789999999999999999998876543 34666888888765
No 62
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=85.39 E-value=6.2 Score=24.55 Aligned_cols=51 Identities=20% Similarity=0.200 Sum_probs=35.8
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
.++++.|.+|+.+|.++|+.+.+-.....+++ -.++....+ .+++.+-|++
T Consensus 9 ~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~~~------~~~~~~~L~~ 59 (66)
T cd04908 9 ENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIVSD------PDKAKEALKE 59 (66)
T ss_pred cCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEECC------HHHHHHHHHH
Confidence 35799999999999999999998876555553 344444422 3466666654
No 63
>PRK07334 threonine dehydratase; Provisional
Probab=85.08 E-value=6.8 Score=33.32 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=47.2
Q ss_pred CeeEEEE-EecCCCcccHHHHHHHHHHcCceEEEeEEEee-----CCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 66 SSIEVVL-ISGMQRNFMLYEVISILEEEGAQVVSASFSTI-----GDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 66 ~~~eV~l-~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-----~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
.|+.+.+ +...+++..|.+|+.+|-++|++|.+.++..- ++...-.+..+|.+. -.+.++-.||++.
T Consensus 323 ~~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~---~~L~~vi~~Lr~~ 395 (403)
T PRK07334 323 AGRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDA---AHLQEVIAALRAA 395 (403)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCH---HHHHHHHHHHHHc
Confidence 4644444 45667899999999999999999999987643 445444555666542 3457788888763
No 64
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=84.17 E-value=7 Score=23.52 Aligned_cols=57 Identities=11% Similarity=0.083 Sum_probs=38.6
Q ss_pred cCCCcccHHHHHHHHHHcCceEEEeEEEee--CCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 75 GMQRNFMLYEVISILEEEGAQVVSASFSTI--GDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 75 ~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~--~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
..+.++.|.++...|.++|+.+.+...... ++.....+...+. . -+.+.+.++|+++
T Consensus 7 ~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~l~~~l~~~ 65 (72)
T cd04878 7 VENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD--D--DVIEQIVKQLNKL 65 (72)
T ss_pred EcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC--H--HHHHHHHHHHhCC
Confidence 346788999999999999999998886543 3444344444432 1 3456777777654
No 65
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.94 E-value=8.4 Score=24.25 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=24.7
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEee
Q 046429 77 QRNFMLYEVISILEEEGAQVVSASFSTI 104 (137)
Q Consensus 77 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~ 104 (137)
++++.|.+++..|.++|+.+++-.....
T Consensus 8 d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 8 DKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred CCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5899999999999999999998876544
No 66
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=83.91 E-value=3.2 Score=32.27 Aligned_cols=59 Identities=12% Similarity=0.048 Sum_probs=45.9
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 73 ISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 73 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
+-|.++++...+|-++|.+.|+++++++.+..++ +.++...|..+. ....+|...|..+
T Consensus 13 viG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg--~Fa~i~lvs~~~--~~~~~le~~L~~l 71 (190)
T PRK11589 13 ALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGE--EFTFIMLLSGSW--NAITLIESTLPLK 71 (190)
T ss_pred EEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCC--ceEEEEEEeCCh--hHHHHHHHHHHhh
Confidence 3577899999999999999999999999999988 445555555543 3557777777654
No 67
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.76 E-value=7.5 Score=23.85 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=39.1
Q ss_pred cCCCcccHHHHHHHHHHcCceEEEeEEEee-C-CeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 75 GMQRNFMLYEVISILEEEGAQVVSASFSTI-G-DKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 75 ~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-~-~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
..++++.|.++..+|.++|+.+.+...... + +...-.+...+.+ .-+..++-++|+++
T Consensus 7 ~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~i~~L~~~ 66 (79)
T cd04881 7 VKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETS---EAALNAALAEIEAL 66 (79)
T ss_pred eCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCC---HHHHHHHHHHHHcC
Confidence 346788999999999999999998876544 2 4333334444433 34456677777653
No 68
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=82.59 E-value=6 Score=25.05 Aligned_cols=58 Identities=16% Similarity=0.207 Sum_probs=43.3
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDLVD 137 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~i~ 137 (137)
+++-|.+|+.+|..-|+++-+-+.+..++--++.|-..+.+.. -....+...|.++++
T Consensus 2 ~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~--~~i~~l~~Ql~Klid 59 (63)
T PF13710_consen 2 QPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD--REIEQLVKQLEKLID 59 (63)
T ss_dssp STTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C--CHHHHHHHHHHCSTT
T ss_pred CcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc--hhHHHHHHHHhccCC
Confidence 5778999999999999999998888766655666666776532 345778889988875
No 69
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=80.51 E-value=2.9 Score=29.03 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=50.2
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 70 VVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 70 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
|+-++|.++++--..+-.+|-|.|+++++-+=+...+++= +-.-|..+.-..|.+.+..+|.+.
T Consensus 5 vITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ft--m~~lV~~~~~~~d~~~lr~~l~~~ 68 (90)
T COG3830 5 VITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFT--MIMLVDISKEVVDFAALRDELAAE 68 (90)
T ss_pred EEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhce--eeeEEcCChHhccHHHHHHHHHHH
Confidence 3345788999999999999999999999999888888654 444455543468889998888754
No 70
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=79.32 E-value=8.9 Score=22.82 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=30.8
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEeeC-CeEEEEEEEEe
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFSTIG-DKIFHTVRAQA 116 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~r~fhtIh~qv 116 (137)
.++++.|.++.+.|-++|+++.+......+ ++.+..|....
T Consensus 6 ~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 6 ENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 357899999999999999999887765444 56555554443
No 71
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=77.32 E-value=4.3 Score=24.74 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 046429 16 IKQLRERIDKLNRMKEQAMKS 36 (137)
Q Consensus 16 Ik~Lq~kve~L~~kk~~L~~~ 36 (137)
|.++-++|.+|++||+.|...
T Consensus 21 iedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 21 IEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567789999999999998753
No 72
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=76.56 E-value=15 Score=34.80 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=56.4
Q ss_pred EEEEEcCCeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEE-EeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 59 VELKDLGSSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASF-STIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 59 V~V~~~~~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~-s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
.+++...+|-||++-++ +++-.|+.+.-.+.-.|++|++|-+ ++.+|+.+-||.-+-.++ .-++..|..++..++
T Consensus 676 ~~~r~~~~~teV~V~a~-d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g-~~~~~dr~~~~~~~l 751 (867)
T COG2844 676 ISVRPHSGGTEVFVYAP-DRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDG-FPVEEDRRAALRGEL 751 (867)
T ss_pred eeecccCCceEEEEEcC-CCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCC-CccchhHHHHHHHHH
Confidence 45677789999988654 6789999999999999999999975 789999999996653332 134455555544443
No 73
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=75.35 E-value=27 Score=32.36 Aligned_cols=75 Identities=8% Similarity=0.112 Sum_probs=52.6
Q ss_pred eEEEEEcCC---eeEEEE-EecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeE-EEEEEEEeeccCcccchHHHHHHH
Q 046429 58 VVELKDLGS---SIEVVL-ISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKI-FHTVRAQAKISRLGVETSRACQRL 132 (137)
Q Consensus 58 ~V~V~~~~~---~~eV~l-~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~-fhtIh~qv~~~~~~~d~~~l~~rL 132 (137)
.|.|++-.+ .+.+.+ +.+.+.++.|.+|..++-++|+.+.+.++...+++. .=.|..+|.+. -.+.+|-.+|
T Consensus 612 ~i~v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~---~~L~~i~~~L 688 (702)
T PRK11092 612 FMAVEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDR---VHLANIMRKI 688 (702)
T ss_pred eEEeEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCH---HHHHHHHHHH
Confidence 466766432 455555 567788999999999999999999999976554433 33456666653 4557777777
Q ss_pred hhh
Q 046429 133 HDL 135 (137)
Q Consensus 133 ~~~ 135 (137)
+.+
T Consensus 689 r~i 691 (702)
T PRK11092 689 RVM 691 (702)
T ss_pred hCC
Confidence 654
No 74
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.61 E-value=6.3 Score=26.32 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 7 DRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 7 d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
..|-.|+.-|.=||-.|++|++|...|..
T Consensus 11 ~KiqqAvdTI~LLQmEieELKEknn~l~~ 39 (79)
T COG3074 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 45778999999999999999999887654
No 75
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=74.35 E-value=24 Score=35.64 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=51.5
Q ss_pred CeEEEEEc-CC---eeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEe---eCCeEE--EEEEEEeeccCcccchHH
Q 046429 57 PVVELKDL-GS---SIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFST---IGDKIF--HTVRAQAKISRLGVETSR 127 (137)
Q Consensus 57 p~V~V~~~-~~---~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~---~~~r~f--htIh~qv~~~~~~~d~~~ 127 (137)
..+.+... +. .+...+. ..+++.+||+++-+||..|+.|+....-. -++..+ |.+..+..... .+|.+.
T Consensus 475 ~~~~l~~~~~~~~~~~~lkiy-~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~-~~~~~~ 552 (1528)
T PF05088_consen 475 LAVDLYRPAGAGPGRLRLKIY-HPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGD-ALDLDD 552 (1528)
T ss_pred ceEEEeccCCCCCCeEEEEEE-cCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCc-cccHHH
Confidence 45555532 22 3444444 34568999999999999999999997532 234444 45555544432 488899
Q ss_pred HHHHHhhhh
Q 046429 128 ACQRLHDLV 136 (137)
Q Consensus 128 l~~rL~~~i 136 (137)
+.++|.+.+
T Consensus 553 ~~~~~~~a~ 561 (1528)
T PF05088_consen 553 IRERFEEAF 561 (1528)
T ss_pred HHHHHHHHH
Confidence 999987654
No 76
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=74.12 E-value=30 Score=32.45 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=52.4
Q ss_pred eEEEEEcCC---eeEEEE-EecCCCcccHHHHHHHHHHcCceEEEeEEEee--CCeEEEEEEEEeeccCcccchHHHHHH
Q 046429 58 VVELKDLGS---SIEVVL-ISGMQRNFMLYEVISILEEEGAQVVSASFSTI--GDKIFHTVRAQAKISRLGVETSRACQR 131 (137)
Q Consensus 58 ~V~V~~~~~---~~eV~l-~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~--~~r~fhtIh~qv~~~~~~~d~~~l~~r 131 (137)
.+.|++-.. .+.|.+ +.+.++++.|.+|..++-++++.+.+.++... ++...=+|-.+|.+ --.++++-.+
T Consensus 652 ~I~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~---~~~L~~l~~~ 728 (743)
T PRK10872 652 IVDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN---LQVLGRVLGK 728 (743)
T ss_pred EEEeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC---HHHHHHHHHH
Confidence 466776432 465665 67788999999999999999999999988654 33333344455654 2455788888
Q ss_pred Hhhh
Q 046429 132 LHDL 135 (137)
Q Consensus 132 L~~~ 135 (137)
|+.+
T Consensus 729 L~~i 732 (743)
T PRK10872 729 LNQV 732 (743)
T ss_pred HhcC
Confidence 8754
No 77
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=73.52 E-value=26 Score=26.30 Aligned_cols=73 Identities=12% Similarity=0.231 Sum_probs=52.7
Q ss_pred EEEcCCeeEEEEEecCC-CcccHHHHHHHHHHcCceEEEeEEE-eeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 61 LKDLGSSIEVVLISGMQ-RNFMLYEVISILEEEGAQVVSASFS-TIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 61 V~~~~~~~eV~l~s~~~-~~~~Ls~vl~vLeEeGl~Vvsa~~s-~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
+...+..-.+.++=.++ ..+.||++|.++-++++.|+.-+=+ -.+++.=-||-.... .+.-|...+-++|+++
T Consensus 64 f~~m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s--sm~~~V~~ii~kl~k~ 138 (150)
T COG4492 64 FYDMLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS--SMEKDVDKIIEKLRKV 138 (150)
T ss_pred hhhcccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch--hhhhhHHHHHHHHhcc
Confidence 34445555666654554 8899999999999999999998866 478877666665554 2456667777777654
No 78
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.32 E-value=9.3 Score=25.25 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046429 6 EDRLDLACCYIKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 6 ~d~l~eA~~YIk~Lq~kve~L~~kk~~L 33 (137)
-..|..|+.=|.-||.++++|+++...|
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3568899999999999999999985444
No 79
>PF14992 TMCO5: TMCO5 family
Probab=70.93 E-value=6.8 Score=32.48 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046429 9 LDLACCYIKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~kk~~L 33 (137)
-.+|++||+.||+++++++..||-+
T Consensus 146 ~eDq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 146 CEDQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999988764
No 80
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.69 E-value=23 Score=21.76 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=37.1
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEe--eCCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 77 QRNFMLYEVISILEEEGAQVVSASFST--IGDKIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 77 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~--~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
++++.|.+++..|.++|+.+.+..... .++.....|+....+ ..++.+.|++
T Consensus 10 d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~------~~~~~~~L~~ 63 (72)
T cd04883 10 DRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN------PRPIIEDLRR 63 (72)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC------HHHHHHHHHH
Confidence 568899999999999999998776443 345666667655522 2467776664
No 81
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=69.61 E-value=47 Score=25.67 Aligned_cols=96 Identities=11% Similarity=0.221 Sum_probs=59.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcc-c---CCCCCCCCCCeEEEEEcCCeeEEEEEecCCCcc
Q 046429 5 QEDRLDLACCYIKQLRERIDKLNRMKEQAMKSIKPNSSNNIM-D---ETNNICSNFPVVELKDLGSSIEVVLISGMQRNF 80 (137)
Q Consensus 5 ~~d~l~eA~~YIk~Lq~kve~L~~kk~~L~~~~~~~~~~~~~-~---~~~~~~~~~p~V~V~~~~~~~eV~l~s~~~~~~ 80 (137)
+.+..++|-+.+...++-+.-++++.+++..........+.. + +.+..........+++-|+.+.|-+ + +.
T Consensus 60 l~~~~~~a~~~l~~~~qll~wvq~~a~~i~~l~~~~~~~~~sL~~~V~~SA~~~gL~i~R~QP~Ge~vQVwl----d-~v 134 (178)
T PRK09731 60 LSERIEQQETMLQQLVAMNTRLKSAAPDIIAARKSATTTPAQVSRVISDSASAHSVVIKRIAERGENIQVWI----E-PV 134 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHCCCeEEEecCCCCEEEEEE----C-CC
Confidence 456778888899988888888888888887754321111100 0 0111122234455667777777765 2 45
Q ss_pred cHHHHH---HHHH-HcCceEEEeEEEeeC
Q 046429 81 MLYEVI---SILE-EEGAQVVSASFSTIG 105 (137)
Q Consensus 81 ~Ls~vl---~vLe-EeGl~Vvsa~~s~~~ 105 (137)
||..++ ..|+ ++|+.|.+...+..+
T Consensus 135 ~F~~ll~WL~~L~~q~GV~V~~ldl~~~~ 163 (178)
T PRK09731 135 VFNDLLNWLNALDEKYALRVTQIDVSAAE 163 (178)
T ss_pred CHHHHHHHHHHHHHhcCceEEEEeeecCC
Confidence 666654 5665 449999999988644
No 82
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=68.90 E-value=11 Score=25.64 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 7 DRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 7 d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
..|..|+.-|-=||..|++|++|...|..
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999877754
No 83
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.71 E-value=34 Score=23.27 Aligned_cols=43 Identities=12% Similarity=-0.028 Sum_probs=31.0
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEee-CCeEEEEEEEEeec
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFSTI-GDKIFHTVRAQAKI 118 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-~~r~fhtIh~qv~~ 118 (137)
.++++.|+++|.+|.+.|+.+..=-|--. +..-=|.+.-.+..
T Consensus 22 ~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg 65 (90)
T cd04931 22 KEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDK 65 (90)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 44789999999999999999988776432 23333666666653
No 84
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=67.35 E-value=26 Score=32.60 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=56.6
Q ss_pred eEEEEEcC---CeeEEEE-EecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHh
Q 046429 58 VVELKDLG---SSIEVVL-ISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLH 133 (137)
Q Consensus 58 ~V~V~~~~---~~~eV~l-~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~ 133 (137)
.+.|..-. ..+.+.+ +.+.+.++.|.+|.++|-+++..|.+.++... +.-+++++..+.-.. --.+.++-.||+
T Consensus 613 ~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n-~~~L~~i~~~l~ 690 (701)
T COG0317 613 VIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKN-LNHLGRVLARLK 690 (701)
T ss_pred EEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECc-HHHHHHHHHHHh
Confidence 45665433 2456655 57778999999999999999999999988766 666777777665543 456688888887
Q ss_pred hh
Q 046429 134 DL 135 (137)
Q Consensus 134 ~~ 135 (137)
.+
T Consensus 691 ~~ 692 (701)
T COG0317 691 QL 692 (701)
T ss_pred cC
Confidence 64
No 85
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=67.04 E-value=24 Score=26.71 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=41.3
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEeeC--CeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFSTIG--DKIFHTVRAQAKISRLGVETSRACQRLHDLVD 137 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~--~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~i~ 137 (137)
-++++.|++|..+|.+.|+++.+-.....+ +..-.||+.+..+ -..+.+...|.++++
T Consensus 10 eN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~----~~i~qi~kQl~KLid 69 (161)
T PRK11895 10 ENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDE----QVIEQITKQLNKLID 69 (161)
T ss_pred cCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCH----HHHHHHHHHHhcccc
Confidence 468999999999999999999988766444 4445666665432 223677777777664
No 86
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=66.80 E-value=43 Score=31.08 Aligned_cols=69 Identities=13% Similarity=0.050 Sum_probs=51.0
Q ss_pred CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhhh
Q 046429 66 SSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDLV 136 (137)
Q Consensus 66 ~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~i 136 (137)
.+-.|.++-..+.++.|++++-+|-=.|+.|.+|+..+ ++...-.+-....-+ ...|+.++.|.++..+
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~ 613 (693)
T PRK00227 545 EDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGP-QDFDPQEFLQAYKSGV 613 (693)
T ss_pred cCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCC-CCCChHHHHHHHHHhh
Confidence 34566666545689999999999999999999999888 666544433333322 2689999999887654
No 87
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=66.68 E-value=25 Score=26.46 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=42.1
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEeeC--CeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFSTIG--DKIFHTVRAQAKISRLGVETSRACQRLHDLVD 137 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~--~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~i~ 137 (137)
-++++.|++|..+|.+.|+.+.+-.....+ +..--||+..-. .-....+...|.++++
T Consensus 9 en~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d----~~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 9 ENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGD----DKVLEQITKQLNKLVD 68 (157)
T ss_pred cCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECC----HHHHHHHHHHHhcCcc
Confidence 468999999999999999999988776554 444455665542 2234777778877764
No 88
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=66.54 E-value=31 Score=22.07 Aligned_cols=43 Identities=9% Similarity=0.017 Sum_probs=31.0
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEeeCC-eEEEEEEEEeec
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFSTIGD-KIFHTVRAQAKI 118 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~-r~fhtIh~qv~~ 118 (137)
.++++.|+++|.+|.+.|+.+..=-|--..+ .-=|.+.-++..
T Consensus 8 ~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 8 KEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 4578999999999999999998877643332 233666666654
No 89
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=66.42 E-value=62 Score=29.86 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=51.3
Q ss_pred eEEEEEcCC---eeEEEE-EecCCCcccHHHHHHHHHHcCceEEEeEEEeeC-CeEEEEEEEEeeccCcccchHHHHHHH
Q 046429 58 VVELKDLGS---SIEVVL-ISGMQRNFMLYEVISILEEEGAQVVSASFSTIG-DKIFHTVRAQAKISRLGVETSRACQRL 132 (137)
Q Consensus 58 ~V~V~~~~~---~~eV~l-~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~r~fhtIh~qv~~~~~~~d~~~l~~rL 132 (137)
.+.|++-.+ .+.+.+ +...++++.|.+|..++-++|+.+.+.+..... +...=.|-.+|.+. -.+.++-.+|
T Consensus 596 ~I~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~---~~L~~ii~~L 672 (683)
T TIGR00691 596 IIEVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNY---KHLLKIMLKI 672 (683)
T ss_pred EEEEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCH---HHHHHHHHHH
Confidence 466665332 455555 567788999999999999999999999987653 44333455666552 4456777776
Q ss_pred hh
Q 046429 133 HD 134 (137)
Q Consensus 133 ~~ 134 (137)
+.
T Consensus 673 ~~ 674 (683)
T TIGR00691 673 KT 674 (683)
T ss_pred hC
Confidence 64
No 90
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=65.61 E-value=6.6 Score=33.74 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046429 7 DRLDLACCYIKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 7 d~l~eA~~YIk~Lq~kve~L~~kk~~L~ 34 (137)
.++++.+.|.+.|++|+|++...|.++.
T Consensus 139 ~r~n~l~eY~q~Laek~Ek~e~drkK~a 166 (449)
T KOG3896|consen 139 NRLNELTEYMQRLAEKIEKAEKDRKKGA 166 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhccc
Confidence 4689999999999999999997766543
No 91
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.17 E-value=37 Score=22.33 Aligned_cols=62 Identities=15% Similarity=0.070 Sum_probs=47.2
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 74 SGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 74 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
...++.++=.++.+++.|-|+.+.-.-+|+-|.-.|-.+----..+.+.++-+-|.+||.++
T Consensus 6 nCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 6 NCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred eCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 34456778889999999999999999999888755544444444445578889999999764
No 92
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=64.76 E-value=36 Score=22.59 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=44.8
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 046429 77 QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDLVD 137 (137)
Q Consensus 77 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~i~ 137 (137)
++++-|.+++.+|.--|+.+-+-+....++.-+..|-.-|.+. -..+.+..-|.+++|
T Consensus 12 n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~---~~i~ql~kQL~KL~d 69 (76)
T PRK11152 12 FRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASE---RPIDLLSSQLNKLVD 69 (76)
T ss_pred CCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCC---chHHHHHHHHhcCcC
Confidence 5789999999999999999998888776565566666666542 334778888888765
No 93
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.24 E-value=32 Score=21.06 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=35.3
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEeeC-C-eEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFSTIG-D-KIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~-r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
.++++.|.+++..|.++|+++.+....... + .-.-.|..++ . . |..++.+.|++
T Consensus 9 ~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~---~-~-~~~~~~~~L~~ 64 (69)
T cd04909 9 PDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKT---Q-E-DRERAKEILKE 64 (69)
T ss_pred CCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECC---H-H-HHHHHHHHHHH
Confidence 467899999999999999999987654431 2 2222233332 1 2 56677777764
No 94
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=60.17 E-value=17 Score=22.77 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 046429 13 CCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 13 ~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
-.||.+|+.++..|...-+.|..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999988887764
No 95
>PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p. The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. The proteins in this entry are non-peptidase homologues belonging to MEROPS peptidase family M24 (clan MG).
Probab=60.09 E-value=15 Score=27.68 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046429 6 EDRLDLACCYIKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 6 ~d~l~eA~~YIk~Lq~kve~L~~kk~~L 33 (137)
+.++.++.+-||+||++++.-++.|++.
T Consensus 77 ~~~~~~v~~~Ikel~k~~~~re~E~~e~ 104 (152)
T PF08644_consen 77 SRHLQEVFRQIKELQKRVKQREQERREK 104 (152)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4569999999999999999877665553
No 96
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.52 E-value=6.9 Score=28.88 Aligned_cols=28 Identities=4% Similarity=0.071 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046429 7 DRLDLACCYIKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 7 d~l~eA~~YIk~Lq~kve~L~~kk~~L~ 34 (137)
-++..+++|+.+++..+.+|-+||+++-
T Consensus 3 ~~~~~~~~~ye~~kaEL~elikkrqe~e 30 (135)
T KOG3856|consen 3 SEMTDELKSYEDTKAELAELIKKRQELE 30 (135)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHH
Confidence 3556678999999999999999998753
No 97
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=57.87 E-value=15 Score=23.15 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=27.4
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeec
Q 046429 77 QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKI 118 (137)
Q Consensus 77 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~ 118 (137)
+.++.+++++..|.++|+.|..-+ .++++++=|..
T Consensus 19 ~~~Gv~a~i~~~La~~~I~i~~is-------S~~~~~ilV~~ 53 (65)
T PF13840_consen 19 DVPGVAAKIFSALAEAGINIFMIS-------SEISISILVKE 53 (65)
T ss_dssp TSHHHHHHHHHHHHHTTS-ECEEE-------ESSEEEEEEEG
T ss_pred CcccHHHHHHHHHHHCCCCEEEEE-------EeeeEEEEEeH
Confidence 478899999999999999987766 45666666655
No 98
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=56.85 E-value=45 Score=24.24 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=39.5
Q ss_pred ccHHHHHHHHHHcCceEEEeEEEe-eCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 046429 80 FMLYEVISILEEEGAQVVSASFST-IGDKIFHTVRAQAKISRLGVETSRACQRLHDLVD 137 (137)
Q Consensus 80 ~~Ls~vl~vLeEeGl~Vvsa~~s~-~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~i~ 137 (137)
--+..++.+|.+.|++|..-.--- .++-.++-+|.+..+ |+..+.+++++.++
T Consensus 68 ~EV~pvi~aL~~~GI~vtAlHNH~l~e~Prl~ymH~~~~g-----dp~~lA~~vr~Ald 121 (123)
T PF07485_consen 68 DEVNPVISALRKNGIEVTALHNHWLFEQPRLFYMHIWGVG-----DPAKLARKVRAALD 121 (123)
T ss_pred HHHHHHHHHHHHCCceEEEEecccccCCCCEEEEEEEecC-----CHHHHHHHHHHHHh
Confidence 357789999999999999887654 444444446887754 55888999988764
No 99
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.94 E-value=21 Score=22.53 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 046429 6 EDRLDLACCYIKQLRERIDKLN 27 (137)
Q Consensus 6 ~d~l~eA~~YIk~Lq~kve~L~ 27 (137)
....++|..||+++-+.++...
T Consensus 36 lg~~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 36 LGKYEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999998888774
No 100
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=55.70 E-value=18 Score=27.11 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 046429 14 CYIKQLRERIDKLNRMKEQAMKSI 37 (137)
Q Consensus 14 ~YIk~Lq~kve~L~~kk~~L~~~~ 37 (137)
.=|+.||.||+.|++-|.-|+...
T Consensus 113 ~eIe~Lq~Ki~~LKeiR~hLk~~R 136 (145)
T PF12548_consen 113 HEIETLQDKIKNLKEIRGHLKKKR 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 348999999999999998888753
No 101
>PRK14639 hypothetical protein; Provisional
Probab=55.40 E-value=49 Score=24.36 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=37.2
Q ss_pred HHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcc-cchHHHHHHHhhhhC
Q 046429 87 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLG-VETSRACQRLHDLVD 137 (137)
Q Consensus 87 ~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~-~d~~~l~~rL~~~i~ 137 (137)
.++++.|+++++..+..-+++.+=.|.-.-..+ ++ =||+++++.+.+++|
T Consensus 5 p~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g-v~iddC~~vSr~is~~LD 55 (140)
T PRK14639 5 ALCKECGVSFYDDELVSENGRKIYRVYITKEGG-VNLDDCERLSELLSPIFD 55 (140)
T ss_pred HhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC-CCHHHHHHHHHHHHHHhc
Confidence 567889999999999988776666666654333 33 468999999887764
No 102
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=52.82 E-value=41 Score=18.94 Aligned_cols=30 Identities=23% Similarity=0.091 Sum_probs=22.7
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeCCe
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIGDK 107 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r 107 (137)
.+..+.+++++|.+.|+.+..-+.+..+..
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~~~~~ 42 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSESEVN 42 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCCCcEE
Confidence 566799999999999998877765543333
No 103
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=51.57 E-value=46 Score=19.19 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.0
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEe
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFST 103 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~ 103 (137)
.+..+++++..|.+.|+.+...+.+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 13 TPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred CccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 56679999999999999998887654
No 104
>smart00338 BRLZ basic region leucin zipper.
Probab=49.98 E-value=30 Score=21.65 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 046429 13 CCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 13 ~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
-.||..|+.+++.|...-++|..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKK 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999988877764
No 105
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=49.82 E-value=68 Score=21.30 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=41.7
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 046429 77 QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDLVD 137 (137)
Q Consensus 77 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~i~ 137 (137)
++++-|.+|..+|---|+.+-+-+....++.-++-|---+..+. -..+.+...|.+++|
T Consensus 11 n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~--~~i~qi~kQL~KLid 69 (76)
T PRK06737 11 NDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTE--NEATLLVSQLKKLIN 69 (76)
T ss_pred cCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCH--HHHHHHHHHHhCCcC
Confidence 58999999999999999999988877655544444433333322 234678888887765
No 106
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.75 E-value=61 Score=20.12 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=25.0
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEeeC
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFSTIG 105 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~ 105 (137)
.++|+-|.++++++-+ |++|+.-.+...+
T Consensus 6 pdkPG~l~~~~~~i~~-~~nI~~~~~~~~~ 34 (68)
T cd04885 6 PERPGALKKFLELLGP-PRNITEFHYRNQG 34 (68)
T ss_pred CCCCCHHHHHHHHhCC-CCcEEEEEEEcCC
Confidence 3589999999999999 9999999887643
No 107
>PRK14638 hypothetical protein; Provisional
Probab=48.75 E-value=74 Score=23.68 Aligned_cols=51 Identities=10% Similarity=0.217 Sum_probs=35.6
Q ss_pred HHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcc-cchHHHHHHHhhhhC
Q 046429 87 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLG-VETSRACQRLHDLVD 137 (137)
Q Consensus 87 ~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~-~d~~~l~~rL~~~i~ 137 (137)
.++++.|+++++..+..-++..+-.|.-.-..+.++ =||++++++|..++|
T Consensus 16 ~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD 67 (150)
T PRK14638 16 RIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLD 67 (150)
T ss_pred HHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhc
Confidence 356788999999999987765554555543323233 368999999987764
No 108
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=48.39 E-value=49 Score=21.21 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046429 6 EDRLDLACCYIKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 6 ~d~l~eA~~YIk~Lq~kve~L~~kk~~L 33 (137)
.-.|.+|=+...+|+.+|+.|+++-+++
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3468899999999999999998876665
No 109
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=47.31 E-value=50 Score=22.37 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=42.4
Q ss_pred EEEEEecCC--Cccc-HHHHHHHHHHcCc--eEEEeEEEeeC------CeEEEEEEEEe----------eccCcccchHH
Q 046429 69 EVVLISGMQ--RNFM-LYEVISILEEEGA--QVVSASFSTIG------DKIFHTVRAQA----------KISRLGVETSR 127 (137)
Q Consensus 69 eV~l~s~~~--~~~~-Ls~vl~vLeEeGl--~Vvsa~~s~~~------~r~fhtIh~qv----------~~~~~~~d~~~ 127 (137)
.|.+.||.+ -..+ ..++=+.|+|+|+ +|..++.+.+. |-++.|.+..- .....++|-.+
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~~~~~~~~D~iv~t~~~~~~~~~ip~~~~~~llt~~~~~~ 83 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVDRSFGDIPLVHGMPFVSGVGIEA 83 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHHhhhcCCCCEEEECCccccccCCCCEEEEeecccccCHHH
Confidence 356677765 3344 4677788889997 57776654321 66777755321 11123788888
Q ss_pred HHHHHhhhh
Q 046429 128 ACQRLHDLV 136 (137)
Q Consensus 128 l~~rL~~~i 136 (137)
+.+++.+.+
T Consensus 84 ~~e~i~~~l 92 (94)
T PRK10310 84 LQNKILTIL 92 (94)
T ss_pred HHHHHHHHH
Confidence 888888764
No 110
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=47.27 E-value=1.1e+02 Score=23.45 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=43.7
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 046429 74 SGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDLVD 137 (137)
Q Consensus 74 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~i~ 137 (137)
-..++++.|.+|...|-..|+++-+-+.....+.-+..+-.-+.... -..+.+.+.|.++++
T Consensus 8 lv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~--~~ieqL~kQL~KLid 69 (174)
T CHL00100 8 LVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDD--RTIEQLTKQLYKLVN 69 (174)
T ss_pred EEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCH--HHHHHHHHHHHHHhH
Confidence 34578999999999999999999998886544444443333343321 125788888888864
No 111
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=47.21 E-value=30 Score=27.88 Aligned_cols=26 Identities=23% Similarity=0.103 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046429 6 EDRLDLACCYIKQLRERIDKLNRMKE 31 (137)
Q Consensus 6 ~d~l~eA~~YIk~Lq~kve~L~~kk~ 31 (137)
..-++.|..||+.|+.+..+..++.|
T Consensus 97 lsiL~kA~~~i~~l~~~~~~~~~~~e 122 (232)
T KOG2483|consen 97 LSILDKALEHIQSLERKSATQQQDIE 122 (232)
T ss_pred hHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 44678999999999876544444333
No 112
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=46.92 E-value=19 Score=29.12 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 11 LACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 11 eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
||---+.+|..||++|++.|++|+.
T Consensus 15 eagvkvreleakveelnkereelkk 39 (347)
T PF06673_consen 15 EAGVKVRELEAKVEELNKEREELKK 39 (347)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHH
Confidence 3444578999999999999999987
No 113
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.16 E-value=1.1e+02 Score=21.79 Aligned_cols=43 Identities=9% Similarity=0.008 Sum_probs=30.2
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEeeC-CeEEEEEEEEeec
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFSTIG-DKIFHTVRAQAKI 118 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~r~fhtIh~qv~~ 118 (137)
.++++-|.++|.+|.+.|+.+..=-|=-.. ..-=|.+...+..
T Consensus 49 ~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg 92 (115)
T cd04930 49 KEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEV 92 (115)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEe
Confidence 447899999999999999999877663322 2222565556654
No 114
>PRK14644 hypothetical protein; Provisional
Probab=45.58 E-value=92 Score=22.84 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=36.2
Q ss_pred HHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 046429 87 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDLVD 137 (137)
Q Consensus 87 ~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~i~ 137 (137)
.++++.|+++++..+..-++..+-.|.-.- . --=||+++++.|..++|
T Consensus 6 ~~~~~~g~el~dve~~~~~~~~~LrV~Idk--~-~iddC~~vSr~is~~LD 53 (136)
T PRK14644 6 KLLEKFGNKINEIKIVKEDGDLFLEVILNS--R-DLKDIEELTKEISDFID 53 (136)
T ss_pred hhHHhcCCEEEEEEEEeCCCCEEEEEEECC--C-CHHHHHHHHHHHHHHhc
Confidence 467889999999999988776666665532 1 24578999999988765
No 115
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=45.39 E-value=51 Score=22.40 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046429 8 RLDLACCYIKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 8 ~l~eA~~YIk~Lq~kve~L~~kk~~L~ 34 (137)
-|.-+-.=|-++|.|++.|..+|.++-
T Consensus 9 eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 9 EIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566778999999999999987753
No 116
>PRK14646 hypothetical protein; Provisional
Probab=45.36 E-value=1.1e+02 Score=22.84 Aligned_cols=53 Identities=8% Similarity=0.093 Sum_probs=38.0
Q ss_pred HHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeec-cCccc-chHHHHHHHhhhhC
Q 046429 85 VISILEEEGAQVVSASFSTIGDKIFHTVRAQAKI-SRLGV-ETSRACQRLHDLVD 137 (137)
Q Consensus 85 vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~-~~~~~-d~~~l~~rL~~~i~ 137 (137)
+-.++++.|++++...+..-++..+-.|.-.-.+ ..+++ ||+++++.+-+++|
T Consensus 13 i~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD 67 (155)
T PRK14646 13 LEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIE 67 (155)
T ss_pred HHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhC
Confidence 3345677899999999998887766666665432 12333 68999999888764
No 117
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.24 E-value=24 Score=22.03 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046429 15 YIKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 15 YIk~Lq~kve~L~~kk~~L 33 (137)
-++.+++++++++++-++|
T Consensus 49 ~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 49 RIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4677777777777665543
No 118
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=45.23 E-value=33 Score=28.21 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046429 7 DRLDLACCYIKQLRERIDKLNRMKEQ 32 (137)
Q Consensus 7 d~l~eA~~YIk~Lq~kve~L~~kk~~ 32 (137)
...+||...=.+||.|+++|++|+.|
T Consensus 44 as~dEa~~L~~~L~~kl~eLqkk~~E 69 (277)
T PF15030_consen 44 ASRDEATRLQDELQGKLEELQKKQHE 69 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45789999999999999999999876
No 119
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=44.80 E-value=40 Score=21.78 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=25.2
Q ss_pred EEEEecCC--CcccH-HHHHHHHHHcCceEEEeEEE
Q 046429 70 VVLISGMQ--RNFML-YEVISILEEEGAQVVSASFS 102 (137)
Q Consensus 70 V~l~s~~~--~~~~L-s~vl~vLeEeGl~Vvsa~~s 102 (137)
|.++|+.+ ..+++ ..+-+.+++.|+++......
T Consensus 2 IlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~ 37 (90)
T PF02302_consen 2 ILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS 37 (90)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhccCceEEEEec
Confidence 56677765 67788 88889999999877766555
No 120
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=44.08 E-value=93 Score=21.31 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=42.0
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhhh
Q 046429 77 QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDLV 136 (137)
Q Consensus 77 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~i 136 (137)
.++..|-+||++.+--|+.|..-+-|..-|.---+|..-|.++| .+|+ |...|.++.
T Consensus 12 ~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R-~~~l--L~~QLeKl~ 68 (86)
T COG3978 12 FNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDR-SVDL--LTSQLEKLY 68 (86)
T ss_pred CChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCC-ChHH--HHHHHHHHc
Confidence 36889999999999999999998877654555556778887777 6643 444455543
No 121
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=43.46 E-value=17 Score=28.53 Aligned_cols=24 Identities=29% Similarity=0.438 Sum_probs=19.1
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHH
Q 046429 4 SQEDRLDLACCYIKQLRERIDKLN 27 (137)
Q Consensus 4 s~~d~l~eA~~YIk~Lq~kve~L~ 27 (137)
|==|+|-.|+.||+.|++=++.-.
T Consensus 146 SKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 146 SKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred CcccchHHHHHHHHHHHHHhcccc
Confidence 334789999999999998776654
No 122
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=43.38 E-value=57 Score=22.68 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=27.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 5 QEDRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 5 ~~d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
+|..+.+.++..+.||++++.+..++..|..
T Consensus 1 ~~~~~q~~~~~~q~~q~~~~~l~~q~~~le~ 31 (110)
T TIGR02338 1 IPPQVQNQLAQLQQLQQQLQAVATQKQQVEA 31 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999887654
No 123
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=43.23 E-value=56 Score=20.00 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=19.9
Q ss_pred CcccHHHHHHHHHHcCceEEEeE
Q 046429 78 RNFMLYEVISILEEEGAQVVSAS 100 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~ 100 (137)
.+..+.+++.+|.+.|+.|...+
T Consensus 14 ~~gi~~~if~aL~~~~I~v~~~~ 36 (64)
T cd04937 14 VPGVMAKIVGALSKEGIEILQTA 36 (64)
T ss_pred CcCHHHHHHHHHHHCCCCEEEEE
Confidence 78889999999999999997433
No 124
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.07 E-value=73 Score=19.08 Aligned_cols=49 Identities=8% Similarity=0.035 Sum_probs=30.9
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
.+..+.+++++|.+.|++|.--+.+.-+ .+|.+-+... |..++.+.|.+
T Consensus 14 ~~~~~~~if~~L~~~~I~v~~i~q~~s~----~~isf~v~~~----~~~~a~~~lh~ 62 (66)
T cd04919 14 MIGIAGRMFTTLADHRINIEMISQGASE----INISCVIDEK----DAVKALNIIHT 62 (66)
T ss_pred CcCHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeHH----HHHHHHHHHHH
Confidence 5677999999999999999544433323 5555555442 23444555544
No 125
>PRK09343 prefoldin subunit beta; Provisional
Probab=42.98 E-value=57 Score=23.28 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=28.7
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 4 SQEDRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 4 s~~d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
-+|..+..-++....||++++.+...|..|..
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~ 35 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDL 35 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999987654
No 126
>PRK14645 hypothetical protein; Provisional
Probab=42.97 E-value=1.1e+02 Score=23.00 Aligned_cols=56 Identities=27% Similarity=0.307 Sum_probs=37.0
Q ss_pred HHHH-HHHHHHcCceEEEeEEEeeCCeEEEEEEEEee-ccCccc-chHHHHHHHhhhhC
Q 046429 82 LYEV-ISILEEEGAQVVSASFSTIGDKIFHTVRAQAK-ISRLGV-ETSRACQRLHDLVD 137 (137)
Q Consensus 82 Ls~v-l~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~-~~~~~~-d~~~l~~rL~~~i~ 137 (137)
+.++ =.++++.|++++...+..-++..+-.|.-.-. ...+++ ||+++++.+-.++|
T Consensus 11 i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD 69 (154)
T PRK14645 11 LQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELD 69 (154)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhc
Confidence 4444 45667789999999998877655445544321 222444 68899999887764
No 127
>PRK14640 hypothetical protein; Provisional
Probab=42.93 E-value=1.2e+02 Score=22.55 Aligned_cols=50 Identities=12% Similarity=0.182 Sum_probs=35.1
Q ss_pred HHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCccc-chHHHHHHHhhhhC
Q 046429 87 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGV-ETSRACQRLHDLVD 137 (137)
Q Consensus 87 ~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~-d~~~l~~rL~~~i~ 137 (137)
.++++.|++++.-.+..-++.-+-.|.---..+ +++ ||++++++|-.++|
T Consensus 14 p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~g-v~lddC~~vSr~is~~LD 64 (152)
T PRK14640 14 APVVALGFELWGIEFIRAGKHSTLRVYIDGENG-VSVENCAEVSHQVGAIMD 64 (152)
T ss_pred HHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC-CCHHHHHHHHHHHHHHhc
Confidence 356777999999999887765555555543332 333 68999999987764
No 128
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.68 E-value=38 Score=21.45 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 046429 14 CYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 14 ~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
.-|.+|++++++++++.++|..
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ 45 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777777666666544
No 129
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=41.44 E-value=1.9e+02 Score=24.17 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=48.0
Q ss_pred EEecCCCcccHHHHHHHHHHcCceEEEeEEE-e-eCCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 72 LISGMQRNFMLYEVISILEEEGAQVVSASFS-T-IGDKIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 72 l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s-~-~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
.+|+.+.++....|=..|.|.|+.++.+.-. - .+++.|--+..+..... .+.+.+.+-|..
T Consensus 11 tvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~--~~~~~l~~~f~~ 73 (287)
T COG0788 11 TVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGP--LDREALRAAFAP 73 (287)
T ss_pred EEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCc--ccHHHHHHHHHH
Confidence 4566678999999999999999999999854 2 46788888888887653 666777777655
No 130
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.48 E-value=1.9e+02 Score=23.63 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=17.8
Q ss_pred CcccHHHHHHHHHHcCceEEEe
Q 046429 78 RNFMLYEVISILEEEGAQVVSA 99 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa 99 (137)
+++.|-.||..|-..|++-|+-
T Consensus 137 ~~~dl~~viNeL~~sGAEaIsI 158 (247)
T COG3879 137 HDDDLQAVINELNISGAEAISI 158 (247)
T ss_pred CHHHHHHHHHHHHhccchheeE
Confidence 5566778999999999998764
No 131
>PRK14647 hypothetical protein; Provisional
Probab=39.97 E-value=1.6e+02 Score=22.04 Aligned_cols=50 Identities=12% Similarity=0.279 Sum_probs=33.9
Q ss_pred HHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcc-cchHHHHHHHhhhhC
Q 046429 87 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLG-VETSRACQRLHDLVD 137 (137)
Q Consensus 87 ~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~-~d~~~l~~rL~~~i~ 137 (137)
.++++.|++++...+..-++..+-.|.---.. .++ =||+++++.+..++|
T Consensus 16 ~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~-gvslddC~~vSr~is~~LD 66 (159)
T PRK14647 16 QVLSSLGLELVELEYKREGREMVLRLFIDKEG-GVNLDDCAEVSRELSEILD 66 (159)
T ss_pred HHHHHCCCEEEEEEEEecCCCeEEEEEEeCCC-CCCHHHHHHHHHHHHHHHc
Confidence 45667799999999998777555444443222 233 368889988877764
No 132
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=39.76 E-value=21 Score=28.44 Aligned_cols=25 Identities=40% Similarity=0.434 Sum_probs=22.1
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEE
Q 046429 77 QRNFMLYEVISILEEEGAQVVSASF 101 (137)
Q Consensus 77 ~~~~~Ls~vl~vLeEeGl~Vvsa~~ 101 (137)
+....|.-|+..||++|+.|+.++.
T Consensus 50 gDd~lL~av~~~le~~G~~vv~~~~ 74 (214)
T PF06230_consen 50 GDDALLRAVIDELEKEGFKVVGAHE 74 (214)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcHHH
Confidence 4678999999999999999999863
No 133
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=38.92 E-value=31 Score=23.34 Aligned_cols=20 Identities=35% Similarity=0.365 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHcCceEEEeE
Q 046429 81 MLYEVISILEEEGAQVVSAS 100 (137)
Q Consensus 81 ~Ls~vl~vLeEeGl~Vvsa~ 100 (137)
.|+.|-+.|++.|.+|++-.
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~ 28 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLE 28 (80)
T ss_pred CchHHHHHHHHCCCEEEecC
Confidence 68999999999999999754
No 134
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=38.88 E-value=39 Score=22.73 Aligned_cols=32 Identities=28% Similarity=0.492 Sum_probs=18.3
Q ss_pred CCChhhhHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 046429 2 MLSQEDRLDLAC-----CYIKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 2 ~~s~~d~l~eA~-----~YIk~Lq~kve~L~~kk~~L 33 (137)
.+.+|++++.|. ..+.+|++.|+.|++=|.++
T Consensus 40 S~DmPe~l~~~~~~QideeV~~LKe~IdaLNK~KkE~ 76 (79)
T PF10398_consen 40 SQDMPEHLNMAFLAQIDEEVEKLKEHIDALNKIKKEL 76 (79)
T ss_dssp SS---TTS-HHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777553 45677888888887755443
No 135
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=38.88 E-value=56 Score=27.31 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=26.7
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 4 SQEDRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 4 s~~d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
++++....++.+++.+-.+|+.|+..|..+..
T Consensus 185 ~l~~~~~~~v~~Lr~~l~~l~~lk~eR~~l~~ 216 (339)
T cd09238 185 STDEDDASIVGTLRSNLEELEALGNERAGIED 216 (339)
T ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788999999999999999999977543
No 136
>PRK14637 hypothetical protein; Provisional
Probab=38.88 E-value=1.6e+02 Score=21.89 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCccc-chHHHHHHHhhhh
Q 046429 82 LYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGV-ETSRACQRLHDLV 136 (137)
Q Consensus 82 Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~-d~~~l~~rL~~~i 136 (137)
..-+-.++++.|+++++..+..-++..+-.|.---.. .+++ ||+.+++.+-..+
T Consensus 11 ~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~-gV~iddC~~vSr~Is~~L 65 (151)
T PRK14637 11 FSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAG-GVGLDDCARVHRILVPRL 65 (151)
T ss_pred HHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCC-CCCHHHHHHHHHHHHHHh
Confidence 4455567888899999999998777655455544333 2444 5788888765544
No 137
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=38.53 E-value=59 Score=27.19 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 9 LDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
+.+.+..++.+-.+|+.|+..|+++..
T Consensus 196 ~~~~i~~L~~ll~~l~~lk~eR~~~~~ 222 (356)
T cd09237 196 VLKQIKQLEELLEDLNLIKEERQRVLK 222 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999987654
No 138
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=37.89 E-value=49 Score=27.45 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=23.9
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHcCceEEE
Q 046429 68 IEVVLISGMQRNFMLYEVISILEEEGAQVVS 98 (137)
Q Consensus 68 ~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvs 98 (137)
++++++||+. +.==|..|++||..|...|+
T Consensus 1 m~~vIiTGlS-GaGKs~Al~~lED~Gy~cvD 30 (284)
T PF03668_consen 1 MELVIITGLS-GAGKSTALRALEDLGYYCVD 30 (284)
T ss_pred CeEEEEeCCC-cCCHHHHHHHHHhcCeeEEc
Confidence 3688889886 44458999999999987775
No 139
>PRK08198 threonine dehydratase; Provisional
Probab=37.79 E-value=1.5e+02 Score=25.06 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=39.6
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEee-----CCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFSTI-----GDKIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-----~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
.++++.|.+++.++-+.|++|++-+.... .+..--+|..++.+.. +...+-++|++
T Consensus 335 ~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~---~~~~l~~~L~~ 395 (404)
T PRK08198 335 PDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPE---HIEEILDALRD 395 (404)
T ss_pred CCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 35899999999999999999998887642 2455555555553321 34567777765
No 140
>PRK14630 hypothetical protein; Provisional
Probab=37.76 E-value=1.5e+02 Score=21.79 Aligned_cols=50 Identities=10% Similarity=0.055 Sum_probs=33.6
Q ss_pred HHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCccc-chHHHHHHHhhhh
Q 046429 86 ISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGV-ETSRACQRLHDLV 136 (137)
Q Consensus 86 l~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~-d~~~l~~rL~~~i 136 (137)
-.++++.|++++...+..-++..+-.|.-.-.++ +++ ||+++++.+...+
T Consensus 15 ~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g-V~idDC~~vSr~i~~~l 65 (143)
T PRK14630 15 KNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDS-FGVDTLCDLHKMILLIL 65 (143)
T ss_pred HHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCC-CCHHHHHHHHHHHHHHh
Confidence 3457788999999999876665554554443332 344 6888888886554
No 141
>PRK14634 hypothetical protein; Provisional
Probab=37.25 E-value=1.6e+02 Score=21.95 Aligned_cols=50 Identities=6% Similarity=0.104 Sum_probs=33.4
Q ss_pred HHHHcCceEEEeEEEeeCCeEEEEEEEEeecc-Cccc-chHHHHHHHhhhhC
Q 046429 88 ILEEEGAQVVSASFSTIGDKIFHTVRAQAKIS-RLGV-ETSRACQRLHDLVD 137 (137)
Q Consensus 88 vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~-~~~~-d~~~l~~rL~~~i~ 137 (137)
++++.|++++...+..-++..+-.|...-..+ .+++ ||+++++.+-.++|
T Consensus 16 ~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD 67 (155)
T PRK14634 16 TAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALE 67 (155)
T ss_pred HHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhc
Confidence 45677999999999887665444554433222 1333 68889988877764
No 142
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=37.00 E-value=80 Score=19.23 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 046429 11 LACCYIKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 11 eA~~YIk~Lq~kve~L~~kk~~L 33 (137)
-....++++.+++++|.+-++.|
T Consensus 40 ~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 40 LLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666665555544
No 143
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.91 E-value=1e+02 Score=18.94 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=21.9
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeCC
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIGD 106 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~ 106 (137)
.+..+.+++.+|.+.|+.|.--+.+.-+.
T Consensus 13 ~~~~~~~i~~aL~~~~I~v~~i~~g~s~~ 41 (65)
T cd04918 13 SSLILERAFHVLYTKGVNVQMISQGASKV 41 (65)
T ss_pred CccHHHHHHHHHHHCCCCEEEEEecCccc
Confidence 56789999999999999995555443333
No 144
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.39 E-value=1.3e+02 Score=19.55 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=30.9
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEE-eeCCeEEEEEEEEeec
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFS-TIGDKIFHTVRAQAKI 118 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s-~~~~r~fhtIh~qv~~ 118 (137)
.++++.|+++|.+|++.|+.+..=-|- .-+..-=|.+.-+++.
T Consensus 8 ~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~ 51 (74)
T cd04929 8 KNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCEC 51 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 457899999999999999999887663 2233333666666654
No 145
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=35.06 E-value=95 Score=20.85 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 9 LDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
|++-.....+|++++++|++..+++.+
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577788889999999977766655544
No 146
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=34.92 E-value=2.4e+02 Score=23.52 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=42.0
Q ss_pred eeEEEEEecC-CCcccHHHHHHHHHHcCceEEEeEEEee-----CCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 67 SIEVVLISGM-QRNFMLYEVISILEEEGAQVVSASFSTI-----GDKIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 67 ~~eV~l~s~~-~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-----~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
|-.+.+.-.. ++++.|+++++.+.+.|++|++-..... .+..--+|..+..+ .-+...+-++|++
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~---~~~~~~i~~~L~~ 373 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG---KEHLDEILKILRD 373 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC---HHHHHHHHHHHHH
Confidence 4444443233 5899999999999999999998876632 23444555555532 1333567777754
No 147
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.83 E-value=65 Score=19.85 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=20.8
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEE
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFS 102 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s 102 (137)
.+..+.+++.+|.+.|+.+++...|
T Consensus 13 ~~gv~~~~~~~L~~~~i~~i~~~~s 37 (63)
T cd04920 13 LLHKLGPALEVFGKKPVHLVSQAAN 37 (63)
T ss_pred CccHHHHHHHHHhcCCceEEEEeCC
Confidence 6778999999999999888766554
No 148
>PRK14632 hypothetical protein; Provisional
Probab=34.23 E-value=1.5e+02 Score=22.56 Aligned_cols=49 Identities=8% Similarity=0.153 Sum_probs=31.6
Q ss_pred HHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCccc-chHHHHHHHhhhhC
Q 046429 87 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGV-ETSRACQRLHDLVD 137 (137)
Q Consensus 87 ~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~-d~~~l~~rL~~~i~ 137 (137)
.++++.|++++...+.. +++.+-.|.-.-.. .+.+ ||+++++.+-.++|
T Consensus 16 pv~~~~G~eLvdve~~~-~~~~~lrV~ID~~~-GV~ldDC~~vSr~is~~LD 65 (172)
T PRK14632 16 PFLASLGLELWGIELSY-GGRTVVRLFVDGPE-GVTIDQCAEVSRHVGLALE 65 (172)
T ss_pred HHHHHCCCEEEEEEEEe-CCCcEEEEEEECCC-CCCHHHHHHHHHHHHHHhc
Confidence 35677899999999885 54443344443222 2333 68899988877664
No 149
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=34.13 E-value=97 Score=22.46 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 9 LDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
..-..+.+.++++++++|+..|++|..
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (135)
T PRK10227 81 KRRTLEKVAEIERHIEELQSMRDQLLA 107 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333467889999999999999998765
No 150
>PRK06382 threonine dehydratase; Provisional
Probab=33.66 E-value=2e+02 Score=24.41 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=37.8
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEE----e-eCCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFS----T-IGDKIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s----~-~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
.++++.|.+++.+|.++|++|++-... . -.+...-+|+.+..+. -+...|-++|++
T Consensus 338 ~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~---~~~~~v~~~L~~ 398 (406)
T PRK06382 338 PDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQ---DHLDRILNALRE 398 (406)
T ss_pred CCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCH---HHHHHHHHHHHH
Confidence 358999999999999999999987653 1 1334555565555421 222477777765
No 151
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=33.30 E-value=96 Score=22.14 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 9 LDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
++.--+||+.+|+|++.|+.--+++..
T Consensus 17 ~~~L~~Yi~~~~~kl~~l~~~~~~~~~ 43 (134)
T PF08336_consen 17 ISNLRNYIEELQEKLDTLKRFLDEMKR 43 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445568999999999999877676655
No 152
>PRK06835 DNA replication protein DnaC; Validated
Probab=33.13 E-value=56 Score=27.35 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 046429 13 CCYIKQLRERIDKLNRMKEQAMKS 36 (137)
Q Consensus 13 ~~YIk~Lq~kve~L~~kk~~L~~~ 36 (137)
-..+++|++++++|.++|.+|+..
T Consensus 64 ~~~~~~l~~~~~~l~~~~~~lL~~ 87 (329)
T PRK06835 64 EETLKELKEKITDLRVKKAELLVS 87 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999998874
No 153
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=32.55 E-value=1.2e+02 Score=21.09 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046429 5 QEDRLDLACCYIKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 5 ~~d~l~eA~~YIk~Lq~kve~L~~kk~~L~ 34 (137)
.++...-.-+.+.+|.+++++|+..++.|.
T Consensus 79 ~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~ 108 (112)
T cd01282 79 CPDLLAVLRRELARIDRQIADLTRSRDRLD 108 (112)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566677777777777777776654
No 154
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=32.48 E-value=60 Score=27.50 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=28.5
Q ss_pred CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEE
Q 046429 66 SSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIF 109 (137)
Q Consensus 66 ~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~f 109 (137)
++.-|. ++|.....+..++++.+|+.|+.||-- -.+.|.|.|
T Consensus 232 ~~~RIl-~tG~~~~~~~~k~~~~iE~~G~~VV~d-d~c~g~r~~ 273 (380)
T TIGR02263 232 DNCRVI-ICGMFCEQPPLNLIKSIELSGCYIVDD-DFIIVHRFE 273 (380)
T ss_pred CCCEEE-EECcCCCCchHHHHHHHHHCCCEEEEe-cCCccchhh
Confidence 556664 467544555689999999999999933 344455544
No 155
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=32.40 E-value=51 Score=18.96 Aligned_cols=13 Identities=31% Similarity=0.721 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 046429 14 CYIKQLRERIDKL 26 (137)
Q Consensus 14 ~YIk~Lq~kve~L 26 (137)
.|++.|..|+++|
T Consensus 23 ~YV~~L~~rl~el 35 (35)
T PF12180_consen 23 AYVRGLLARLKEL 35 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 5999999999876
No 156
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=32.05 E-value=93 Score=24.25 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 6 EDRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 6 ~d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
-.++.+.-.-|..|+.++++++.||+.|+.
T Consensus 112 ~~~v~~l~~~l~~L~~ki~~~k~k~~~l~a 141 (219)
T TIGR02977 112 EETLAKLQEDIAKLQAKLAEARARQKALAI 141 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777888888888888877665
No 157
>PRK08526 threonine dehydratase; Provisional
Probab=32.03 E-value=2.4e+02 Score=24.17 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=43.5
Q ss_pred eeEEEEEecC-CCcccHHHHHHHHHHcCceEEEeEEEeeCCe-----EEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 67 SIEVVLISGM-QRNFMLYEVISILEEEGAQVVSASFSTIGDK-----IFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 67 ~~eV~l~s~~-~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r-----~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
|-.+.+.... +.|+.|.+++..+-+.|.+|++-...+.+.+ ..-.+-+++.+. -+...+-+.|++
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~---~~~~~~~~~l~~ 394 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGK---EHQEEIRKILTE 394 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCH---HHHHHHHHHHHH
Confidence 4444444344 5899999999999999999999998764443 444455565542 233566666643
No 158
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.85 E-value=1.6e+02 Score=22.22 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=36.7
Q ss_pred HHHHHH-HHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcc-cchHHHHHHHhhhhC
Q 046429 82 LYEVIS-ILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLG-VETSRACQRLHDLVD 137 (137)
Q Consensus 82 Ls~vl~-vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~-~d~~~l~~rL~~~i~ 137 (137)
+.++++ +++..|++++...+...|...+--|...=. +.+. =||+++++.+-.++|
T Consensus 10 v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~id~~-g~v~lddC~~vSr~is~~LD 66 (153)
T COG0779 10 VTELIEPVVESLGFELVDVEFVKEGRDSVLRIYIDKE-GGVTLDDCADVSRAISALLD 66 (153)
T ss_pred HHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEeCCC-CCCCHHHHHHHHHHHHHHhc
Confidence 344444 345559999999999988655555544433 2333 378999998877664
No 159
>PHA03338 US22 family homolog; Provisional
Probab=31.83 E-value=26 Score=29.48 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=30.6
Q ss_pred ceEEEeE---EEeeCCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 94 AQVVSAS---FSTIGDKIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 94 l~Vvsa~---~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
+-.+.++ |..+|=|.||+|||.+.-...||=..|+...+++
T Consensus 140 iY~vA~s~eeFa~vGlR~vypihC~agl~esgill~R~w~~ir~ 183 (344)
T PHA03338 140 IYLLAASAEDFAAIGFRFFYPIHCRAGLGEIGILLGRLWLLIRQ 183 (344)
T ss_pred EEEeccCHHHHHhhcceeEEEeccccccchhHHHHHHHHHHHHh
Confidence 3344444 4567889999999999887778877888777665
No 160
>PHA01750 hypothetical protein
Probab=31.81 E-value=60 Score=21.47 Aligned_cols=9 Identities=11% Similarity=0.604 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 046429 19 LRERIDKLN 27 (137)
Q Consensus 19 Lq~kve~L~ 27 (137)
|+++|++++
T Consensus 61 l~~qv~eik 69 (75)
T PHA01750 61 LSRQVEEIK 69 (75)
T ss_pred HHHHHHHHH
Confidence 344444443
No 161
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=31.15 E-value=76 Score=19.76 Aligned_cols=21 Identities=10% Similarity=0.320 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 046429 7 DRLDLACCYIKQLRERIDKLN 27 (137)
Q Consensus 7 d~l~eA~~YIk~Lq~kve~L~ 27 (137)
-.+.||+.+++.++.++..|.
T Consensus 31 ~p~~EA~~f~~~ie~qL~~Lt 51 (52)
T PF03791_consen 31 RPFQEAMEFCREIEQQLSSLT 51 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356788888888888887763
No 162
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=30.82 E-value=1.1e+02 Score=22.00 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046429 8 RLDLACCYIKQLRERIDKLNRMKEQAMKS 36 (137)
Q Consensus 8 ~l~eA~~YIk~Lq~kve~L~~kk~~L~~~ 36 (137)
+++||=.-++.|+..++++.+.|.++...
T Consensus 4 Tl~EA~~lLP~l~~~~~~~~~~~~~~~~~ 32 (120)
T PF09969_consen 4 TLEEANALLPLLRPILEEIRELKAELEEL 32 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998887664
No 163
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=30.19 E-value=92 Score=25.73 Aligned_cols=32 Identities=9% Similarity=0.279 Sum_probs=26.9
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 4 SQEDRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 4 s~~d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
+.++.+.+++..++.+-.+|+.|++.|+.+..
T Consensus 183 ~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~ 214 (342)
T cd08915 183 ALDPEVSEVVSSLRPLLNEVSELEKERERFIS 214 (342)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567789999999999999999999987654
No 164
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=29.43 E-value=57 Score=26.96 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046429 9 LDLACCYIKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~kk~~L 33 (137)
|--|+.||..||.=+.++.+.+.-+
T Consensus 158 LRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 158 LRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhh
Confidence 5679999999999999998876544
No 165
>PHA02047 phage lambda Rz1-like protein
Probab=29.24 E-value=1.2e+02 Score=21.50 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 046429 5 QEDRLDLACCYIKQLRERIDKLNRMKE 31 (137)
Q Consensus 5 ~~d~l~eA~~YIk~Lq~kve~L~~kk~ 31 (137)
+-.+++.|=.-|..+|+.|++|++|.+
T Consensus 39 la~qLE~a~~r~~~~Q~~V~~l~~kae 65 (101)
T PHA02047 39 QTARLEALEVRYATLQRHVQAVEARTN 65 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778889999999999998753
No 166
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=29.23 E-value=1.3e+02 Score=23.32 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=30.5
Q ss_pred EEEEEcCCeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEE
Q 046429 59 VELKDLGSSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFS 102 (137)
Q Consensus 59 V~V~~~~~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s 102 (137)
..|--+++|+.... ..++.-+-|+.|++.|.+|..|-.+
T Consensus 122 ~~Ifl~n~gV~l~~-----~~~~~~e~Lk~L~~~Gv~I~~CGtC 160 (194)
T TIGR03527 122 KRILFVNGGVKLTT-----EGSEVLEDLKELEKKGVEILSCGTC 160 (194)
T ss_pred eEEEEEccceeecc-----CCchHHHHHHHHHHCCCEEEEeHHH
Confidence 66667777766543 3568889999999999999999765
No 167
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=29.15 E-value=59 Score=21.26 Aligned_cols=19 Identities=42% Similarity=0.613 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046429 15 YIKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 15 YIk~Lq~kve~L~~kk~~L 33 (137)
=|+.|+++|++|+.+=-+.
T Consensus 3 d~~eLk~evkKL~~~A~~~ 21 (66)
T PF05082_consen 3 DIEELKKEVKKLNRKATQA 21 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3789999999998764443
No 168
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=28.99 E-value=87 Score=18.70 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=19.4
Q ss_pred CCcccHHHHHHHHHHcCceEEEe
Q 046429 77 QRNFMLYEVISILEEEGAQVVSA 99 (137)
Q Consensus 77 ~~~~~Ls~vl~vLeEeGl~Vvsa 99 (137)
+.+..+.+++++|.+.|+.+---
T Consensus 11 ~~~g~~~~i~~~L~~~~I~i~~i 33 (75)
T cd04913 11 DKPGVAAKIFGALAEANINVDMI 33 (75)
T ss_pred CCCcHHHHHHHHHHHcCCeEEEE
Confidence 46788999999999999998533
No 169
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=28.85 E-value=1.5e+02 Score=18.39 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=21.6
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEe
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFST 103 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~ 103 (137)
+..+..+.+++.+|.+.|++|..-+.+.
T Consensus 12 m~~~gv~~ki~~~L~~~~I~v~~i~~~~ 39 (66)
T cd04915 12 LSTPGVLARGLAALAEAGIEPIAAHQSM 39 (66)
T ss_pred CCcchHHHHHHHHHHHCCCCEEEEEecC
Confidence 3456689999999999999995555443
No 170
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=28.67 E-value=1.6e+02 Score=18.74 Aligned_cols=46 Identities=26% Similarity=0.303 Sum_probs=33.1
Q ss_pred eEEEEEcCCeeEEEEEecCC--C---cccHHHHHHHHHHcCceEEEeEEEe
Q 046429 58 VVELKDLGSSIEVVLISGMQ--R---NFMLYEVISILEEEGAQVVSASFST 103 (137)
Q Consensus 58 ~V~V~~~~~~~eV~l~s~~~--~---~~~Ls~vl~vLeEeGl~Vvsa~~s~ 103 (137)
.|.++..++.+.|.+.+..+ . .--+.++-..|.+.|+.+.+.+++.
T Consensus 28 ~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~ 78 (85)
T PF02120_consen 28 EVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQ 78 (85)
T ss_dssp EEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEES
T ss_pred EEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEE
Confidence 57788889999999987654 1 1246778888999999999887764
No 171
>PRK03094 hypothetical protein; Provisional
Probab=28.34 E-value=61 Score=21.95 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHcCceEEEeEEE-----------eeCCeEEEEEE-----EEeeccCcccchHHHHHHHhh
Q 046429 81 MLYEVISILEEEGAQVVSASFS-----------TIGDKIFHTVR-----AQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 81 ~Ls~vl~vLeEeGl~Vvsa~~s-----------~~~~r~fhtIh-----~qv~~~~~~~d~~~l~~rL~~ 134 (137)
-|+.|=+.|++.|.+||+-... +=.++-|=.|+ +-|-+ .-|.-+++++++|++
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~-A~G~TaeEI~~~ve~ 77 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVIT-ASGLTADEICQQVES 77 (80)
T ss_pred CcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccccccCCcEEE-cCCCCHHHHHHHHHH
Confidence 5889999999999999865431 11122222232 22222 237777888888764
No 172
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=28.21 E-value=43 Score=29.91 Aligned_cols=19 Identities=16% Similarity=0.459 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046429 15 YIKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 15 YIk~Lq~kve~L~~kk~~L 33 (137)
=|.+|+++|++|+++.+++
T Consensus 32 kie~L~kql~~Lk~q~~~l 50 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDL 50 (489)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 5788888888888775544
No 173
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=28.18 E-value=1.2e+02 Score=23.34 Aligned_cols=30 Identities=10% Similarity=0.251 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046429 7 DRLDLACCYIKQLRERIDKLNRMKEQAMKS 36 (137)
Q Consensus 7 d~l~eA~~YIk~Lq~kve~L~~kk~~L~~~ 36 (137)
.++...-.-|..|+.|+++++.||+.|+..
T Consensus 112 ~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar 141 (221)
T PF04012_consen 112 AQVEKLKEQLEELEAKLEELKSKREELKAR 141 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556777788888888888877653
No 174
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=28.14 E-value=1.2e+02 Score=24.90 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHc-------CceEEEeEEEeeCCeEEEEEEE
Q 046429 80 FMLYEVISILEEE-------GAQVVSASFSTIGDKIFHTVRA 114 (137)
Q Consensus 80 ~~Ls~vl~vLeEe-------Gl~Vvsa~~s~~~~r~fhtIh~ 114 (137)
++..+|+..|-.+ ..++++++....+++.||.+=.
T Consensus 174 GspeeVi~~l~~~v~g~~~~e~eLl~a~~re~dGktYY~~E~ 215 (262)
T PLN00066 174 GPPEKVISGFGPELIGEPVEEGKVLSMEVAEHSGRTYYQFEL 215 (262)
T ss_pred CCHHHHHHHHHHHhcCCCccccceeEeeeeecCCcEEEEEEE
Confidence 4567888888754 4689999988889999998754
No 175
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=27.94 E-value=1.5e+02 Score=19.11 Aligned_cols=29 Identities=14% Similarity=0.408 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 7 DRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 7 d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
+.++++-..|..++.++++|.+.-.+.+.
T Consensus 7 ~~v~~i~~~i~~i~~~~~~l~~l~~~~l~ 35 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEKLNELRKLHKKILS 35 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56788888999999999999877655543
No 176
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=27.58 E-value=70 Score=21.14 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=44.4
Q ss_pred ecCC-CcccHHHHHHHHHHcCceEEEeEEEeeCCe---------EEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 74 SGMQ-RNFMLYEVISILEEEGAQVVSASFSTIGDK---------IFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 74 s~~~-~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r---------~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
-|.+ ....+++|=++|-+.|+++.+-+- ..++ --+.+.+.+..+. .|.+.+...|.++
T Consensus 5 lg~~~~a~~ia~Vs~~lA~~~~NI~~I~~--l~~~~~~~~~~~~~~~~~e~~v~~~~--~~~~~lr~~L~~l 72 (84)
T cd04871 5 LGRPLTAEQLAAVTRVVADQGLNIDRIRR--LSGRVPLEEQDDSPKACVEFSVRGQP--ADLEALRAALLEL 72 (84)
T ss_pred EcCcCCHHHHHHHHHHHHHcCCCHHHHHH--hhccccccccCCCCcEEEEEEEeCCC--CCHHHHHHHHHHH
Confidence 4556 778899999999999998866543 2222 3679999998754 6889999998865
No 177
>PRK10698 phage shock protein PspA; Provisional
Probab=27.29 E-value=1.3e+02 Score=23.81 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046429 7 DRLDLACCYIKQLRERIDKLNRMKEQAMKS 36 (137)
Q Consensus 7 d~l~eA~~YIk~Lq~kve~L~~kk~~L~~~ 36 (137)
.++.+--.-+..|+.+|++++.||+.|+..
T Consensus 113 ~~~~~L~~~l~~L~~ki~eak~k~~~L~aR 142 (222)
T PRK10698 113 ETLARMKKEIGELENKLSETRARQQALMLR 142 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667888888999999999888764
No 178
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.19 E-value=1.4e+02 Score=20.50 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046429 9 LDLACCYIKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~kk~~L 33 (137)
..-..+-+..|++++++|++.++.|
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l 105 (113)
T cd01109 81 LELLEEHREELEEQIAELQETLAYL 105 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555554443
No 179
>PRK14641 hypothetical protein; Provisional
Probab=27.00 E-value=2.6e+02 Score=21.41 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=31.1
Q ss_pred HcCceEEEeEEEeeCCeEEEEEEEEeeccCccc-chHHHHHHHhhhhC
Q 046429 91 EEGAQVVSASFSTIGDKIFHTVRAQAKISRLGV-ETSRACQRLHDLVD 137 (137)
Q Consensus 91 EeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~-d~~~l~~rL~~~i~ 137 (137)
+.|++++...+..-+...+=.|...-. ..+++ ||+++++.+-.++|
T Consensus 21 ~~G~eLvdve~~~~~~~~~lrV~ID~~-~gv~lDdC~~vSr~Is~~LD 67 (173)
T PRK14641 21 GEGVYLVSMTVKGSGKGRKIEVLLDAD-TGIRIDQCAFFSRRIRERLE 67 (173)
T ss_pred cCCeEEEEEEEEeCCCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHHhC
Confidence 779999999998876644434444422 22444 58888888877664
No 180
>PF14282 FlxA: FlxA-like protein
Probab=26.86 E-value=98 Score=21.57 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 046429 13 CCYIKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 13 ~~YIk~Lq~kve~L~~kk~~L~ 34 (137)
...|+.|+++|+.|.++-.+|.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~ 39 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELS 39 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655544443
No 181
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=26.34 E-value=56 Score=19.99 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=14.9
Q ss_pred cHHHHHHHHHHcCceEEEeE
Q 046429 81 MLYEVISILEEEGAQVVSAS 100 (137)
Q Consensus 81 ~Ls~vl~vLeEeGl~Vvsa~ 100 (137)
...++|+.|.++|.+.|++.
T Consensus 13 ~Y~r~L~~l~~~G~~~vSS~ 32 (50)
T PF06971_consen 13 LYLRYLEQLKEEGVERVSSQ 32 (50)
T ss_dssp HHHHHHHHHHHTT-SEE-HH
T ss_pred HHHHHHHHHHHcCCeeECHH
Confidence 35789999999999988763
No 182
>PHA02114 hypothetical protein
Probab=26.27 E-value=98 Score=22.23 Aligned_cols=22 Identities=41% Similarity=0.412 Sum_probs=19.3
Q ss_pred CcccHHHHHHHHHHcCceEEEe
Q 046429 78 RNFMLYEVISILEEEGAQVVSA 99 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa 99 (137)
...|.-.|+.-|||.|.+||-.
T Consensus 94 sr~pwi~v~s~le~~g~~vvat 115 (127)
T PHA02114 94 SRAPWIKVISRLEEAGFNVVAT 115 (127)
T ss_pred ccCcHHHHHHHHHhcCceeeeh
Confidence 4679999999999999999853
No 183
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=25.64 E-value=1e+02 Score=22.69 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046429 9 LDLACCYIKQLRERIDKLNRMKEQAMKS 36 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~kk~~L~~~ 36 (137)
+..--.||++|+++++.+...+++....
T Consensus 57 le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 57 LERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445689999999999999887766543
No 184
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=25.61 E-value=1.7e+02 Score=20.62 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 9 LDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
..-+.+.++++++++++|++.++.|..
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (126)
T cd04785 81 DAIARAHLADVRARIADLRRLEAELKR 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567788888888899888877665
No 185
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=25.57 E-value=70 Score=22.20 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=21.0
Q ss_pred EEEEEecCC--CcccHHHHHHHHHHcCceE
Q 046429 69 EVVLISGMQ--RNFMLYEVISILEEEGAQV 96 (137)
Q Consensus 69 eV~l~s~~~--~~~~Ls~vl~vLeEeGl~V 96 (137)
.|.++|+.. ......++-+.++++|+++
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~ 31 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPL 31 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcE
Confidence 466677654 6677888889999999865
No 186
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=25.53 E-value=5.8e+02 Score=25.11 Aligned_cols=79 Identities=10% Similarity=0.036 Sum_probs=58.5
Q ss_pred CCCeEEEEEcC-CeeEEEEEecCC----CcccHHHHHHHHHHcCceEEEeEEEee-CCeEEEEEEEEeeccCcccchHHH
Q 046429 55 NFPVVELKDLG-SSIEVVLISGMQ----RNFMLYEVISILEEEGAQVVSASFSTI-GDKIFHTVRAQAKISRLGVETSRA 128 (137)
Q Consensus 55 ~~p~V~V~~~~-~~~eV~l~s~~~----~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-~~r~fhtIh~qv~~~~~~~d~~~l 128 (137)
..|.+.+.+.. ++-++.+..+++ ....|+.+-.++.-+|+.+..+-.-.+ |+-..|++..+-.....-+ -..+
T Consensus 215 ~g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~~~~-~~~~ 293 (1002)
T PTZ00324 215 VGPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTADDNP-DLSI 293 (1002)
T ss_pred CCCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCCCcc-cccH
Confidence 35999999888 557767766542 566799999999999999999977554 7778888888876543222 3567
Q ss_pred HHHHhh
Q 046429 129 CQRLHD 134 (137)
Q Consensus 129 ~~rL~~ 134 (137)
++|+++
T Consensus 294 ~~~~~~ 299 (1002)
T PTZ00324 294 EDRASL 299 (1002)
T ss_pred HHHHHh
Confidence 888876
No 187
>PRK11898 prephenate dehydratase; Provisional
Probab=25.41 E-value=3.4e+02 Score=22.07 Aligned_cols=41 Identities=10% Similarity=-0.027 Sum_probs=30.1
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeCCeE-EEEEEEEeec
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIGDKI-FHTVRAQAKI 118 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~-fhtIh~qv~~ 118 (137)
+++.|+++|.+|.+.|+.+..=-|-=..++. =|.+...+..
T Consensus 207 ~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg 248 (283)
T PRK11898 207 LPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEG 248 (283)
T ss_pred CccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEc
Confidence 4899999999999999999887765333322 2666666654
No 188
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=25.37 E-value=2.6e+02 Score=20.06 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=31.1
Q ss_pred HHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCccc-chHHHHHHHhhhhC
Q 046429 87 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGV-ETSRACQRLHDLVD 137 (137)
Q Consensus 87 ~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~-d~~~l~~rL~~~i~ 137 (137)
.++++.|++++...+..-++..+=.|-..-..+ +++ ||+.+++.+...+|
T Consensus 4 ~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~g-v~lddc~~~sr~i~~~LD 54 (141)
T PF02576_consen 4 PLLEELGLELVDVEVVKEGGNRILRVFIDKDGG-VSLDDCEKVSRAISALLD 54 (141)
T ss_dssp HHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS----HHHHHHHHHHHGGGTT
T ss_pred cchhhcCCEEEEEEEEECCCCEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHc
Confidence 356777999999999988876444444433333 444 57888888877654
No 189
>PF10612 Spore-coat_CotZ: Spore coat protein Z; InterPro: IPR019593 This entry represents proteins spore coat proteins Z (aka CotZ) and Y (aka CotY). They belong to a cysteine-rich spore coat family and are necessary for the assembly of intact exosporium.
Probab=25.34 E-value=66 Score=24.48 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 046429 8 RLDLACCYIKQLRERIDK 25 (137)
Q Consensus 8 ~l~eA~~YIk~Lq~kve~ 25 (137)
-|-|+++.|++||+.+++
T Consensus 14 CV~dvv~~I~dlQ~~a~~ 31 (156)
T PF10612_consen 14 CVCDVVRFILDLQDAAED 31 (156)
T ss_pred cHHHHHHHHHHHHHHHhc
Confidence 367999999999999966
No 190
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.28 E-value=84 Score=21.82 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 046429 7 DRLDLACCYIKQLRERIDKLNRM 29 (137)
Q Consensus 7 d~l~eA~~YIk~Lq~kve~L~~k 29 (137)
+.....-+||+-|++.+++++-.
T Consensus 5 ~l~ekiekYi~~leeaL~~~k~~ 27 (90)
T COG1849 5 ELAEKIEKYIELLEEALKEIKSR 27 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 34456789999999999998753
No 191
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=25.14 E-value=68 Score=21.83 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=21.9
Q ss_pred EEEEEecCC--CcccHHHHHHHHHHcCceE
Q 046429 69 EVVLISGMQ--RNFMLYEVISILEEEGAQV 96 (137)
Q Consensus 69 eV~l~s~~~--~~~~Ls~vl~vLeEeGl~V 96 (137)
.|.++|+.+ ..++..++-+.++|+|+++
T Consensus 5 ~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~ 34 (95)
T TIGR00853 5 NILLLCAAGMSTSLLVNKMNKAAEEYGVPV 34 (95)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHCCCcE
Confidence 566777765 5678889999999999864
No 192
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=24.90 E-value=99 Score=21.73 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=12.2
Q ss_pred HHHHHHH-HHHHHHHHHHH
Q 046429 14 CYIKQLR-ERIDKLNRMKE 31 (137)
Q Consensus 14 ~YIk~Lq-~kve~L~~kk~ 31 (137)
-||++.| +++++|++|-+
T Consensus 64 ~Y~r~~EkEqL~~Lk~kl~ 82 (100)
T PF04568_consen 64 QYFRKKEKEQLKKLKEKLK 82 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3777776 77888766543
No 193
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.55 E-value=2.1e+02 Score=18.60 Aligned_cols=54 Identities=7% Similarity=0.055 Sum_probs=32.8
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEeeC-CeEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 77 QRNFMLYEVISILEEEGAQVVSASFSTIG-DKIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 77 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
++|+.|.+++.+|- |.+|.+..+...+ +..--.+-.++.++ -=+...+.++|++
T Consensus 10 D~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~--~~~~~~i~~~L~~ 64 (85)
T cd04906 10 ERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG--AEELAELLEDLKS 64 (85)
T ss_pred CCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc--HHHHHHHHHHHHH
Confidence 58999999999999 7788877776543 22222233344331 1223566666654
No 194
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=24.45 E-value=1.7e+02 Score=20.92 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046429 9 LDLACCYIKQLRERIDKLNRMKEQAMKS 36 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~kk~~L~~~ 36 (137)
..-.-+.+.+|++++++|++.++.|...
T Consensus 83 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 110 (131)
T TIGR02043 83 KAIVDAKLELVDEKINELTKIRRSLKKL 110 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567888888888888888777653
No 195
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=24.38 E-value=2e+02 Score=24.47 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=33.0
Q ss_pred CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEE
Q 046429 66 SSIEVVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFH 110 (137)
Q Consensus 66 ~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fh 110 (137)
+|+..++ |.. ....++++.|+.++..|+.++|..-|-|++|
T Consensus 291 gGFllf~-~~p---~k~~~l~r~l~~~~~~~~~~~Fd~~Gsr~i~ 331 (333)
T COG2605 291 GGFLLFF-CDP---SKRNELARALEKEQGFVVDTSFDKEGSRIIF 331 (333)
T ss_pred ccEEEEE-eCc---cchHHHHHHHHHhcCCeEEEEecCCCeEEEe
Confidence 5776654 443 4678999999999999999999988888766
No 196
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=24.28 E-value=1.1e+02 Score=26.84 Aligned_cols=20 Identities=25% Similarity=0.697 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046429 9 LDLACCYIKQLRERIDKLNR 28 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~ 28 (137)
+..++.||.+||+..++..+
T Consensus 275 Lk~s~dYIr~Lqq~~q~~~E 294 (411)
T KOG1318|consen 275 LKASCDYIRELQQTLQRARE 294 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 67889999999988775443
No 197
>PRK14633 hypothetical protein; Provisional
Probab=24.27 E-value=3e+02 Score=20.35 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=32.4
Q ss_pred HHHHHHcCceEEEeEEEeeCCeEEEEEEEEeec-cCccc-chHHHHHHHhhhhC
Q 046429 86 ISILEEEGAQVVSASFSTIGDKIFHTVRAQAKI-SRLGV-ETSRACQRLHDLVD 137 (137)
Q Consensus 86 l~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~-~~~~~-d~~~l~~rL~~~i~ 137 (137)
-.++++.|++++.-.+..-++. ++.--+.. ..+++ ||+.+++.+-.++|
T Consensus 11 ~p~~~~~G~eL~dve~~~~~~~---~lrV~ID~~~Gv~lddC~~vSr~i~~~LD 61 (150)
T PRK14633 11 EPITADLGYILWGIEVVGSGKL---TIRIFIDHENGVSVDDCQIVSKEISAVFD 61 (150)
T ss_pred HHHHHHCCCEEEEEEEEeCCCc---EEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 3467888999999999876653 33333432 12333 68888888877654
No 198
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.13 E-value=49 Score=26.76 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=17.0
Q ss_pred CChhhhHHHHHHHHHHHHHH
Q 046429 3 LSQEDRLDLACCYIKQLRER 22 (137)
Q Consensus 3 ~s~~d~l~eA~~YIk~Lq~k 22 (137)
++.+|.|.+|++|+|--|..
T Consensus 123 l~R~dkv~QAvSl~rA~QTg 142 (250)
T COG4424 123 LHRPDKVSQAVSLWRAVQTG 142 (250)
T ss_pred eecchHHHHHHHHHHHHHhc
Confidence 57899999999999877654
No 199
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=24.10 E-value=2.1e+02 Score=18.57 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=27.9
Q ss_pred eeEEEEEecCCCcccHHHHHHHHHHcCceEEEeE
Q 046429 67 SIEVVLISGMQRNFMLYEVISILEEEGAQVVSAS 100 (137)
Q Consensus 67 ~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~ 100 (137)
.+.|.+.-+...++.-.++-..|++.|+.+++..
T Consensus 3 ~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~~~ 36 (90)
T PF13399_consen 3 DVRVEVLNGTGVSGLAARVADALRNRGFTVVEVG 36 (90)
T ss_pred ceEEEEEECcCCcCHHHHHHHHHHHCCCceeecC
Confidence 3556666777778999999999999999998764
No 200
>COG1695 Predicted transcriptional regulators [Transcription]
Probab=24.09 E-value=1.7e+02 Score=20.59 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=24.2
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeCC---eEEEEE
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIGD---KIFHTV 112 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~---r~fhtI 112 (137)
.++.++-+|.-|+++|+-.. .....++ |.+|++
T Consensus 43 s~gtiYp~L~~Le~~Gli~~--~~~~~~~g~~rk~Y~l 78 (138)
T COG1695 43 SPGTIYPLLKRLEKEGLIES--RWEESGGGPPRKYYRL 78 (138)
T ss_pred CCCcHHHHHHHHHHCCCeEE--EecccCCCCCceEEEE
Confidence 57889999999999998443 3333444 788876
No 201
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=24.06 E-value=1.9e+02 Score=20.34 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 7 DRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 7 d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
+...-.-+.+..+++++++|+..++.|..
T Consensus 76 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 104 (124)
T TIGR02051 76 EMYELASRKLKSVQAKMADLLRIERLLEE 104 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556678888888888887777655
No 202
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.85 E-value=1.5e+02 Score=16.71 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=21.2
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEE
Q 046429 77 QRNFMLYEVISILEEEGAQVVSASFS 102 (137)
Q Consensus 77 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s 102 (137)
+.+..+.+++++|.+.|+.+..-+.+
T Consensus 10 ~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 10 DKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 46788999999999999998665543
No 203
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=23.66 E-value=1.7e+02 Score=19.18 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=21.3
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeCC--eEEEEE
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIGD--KIFHTV 112 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~--r~fhtI 112 (137)
..+-||.-|..||++|+-- ..-...+. +.+|.|
T Consensus 27 t~g~Ls~hL~~Le~~GyV~--~~k~~~~~~p~t~~~l 61 (80)
T PF13601_consen 27 TDGNLSKHLKKLEEAGYVE--VEKEFEGRRPRTWYSL 61 (80)
T ss_dssp -HHHHHHHHHHHHHTTSEE--EEEE-SSS--EEEEEE
T ss_pred CHHHHHHHHHHHHHCCCEE--EEEeccCCCCeEEEEE
Confidence 3567999999999999833 33333444 555544
No 204
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=23.63 E-value=79 Score=19.98 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046429 9 LDLACCYIKQLRERIDK 25 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~ 25 (137)
+.=|.||+++-++.+++
T Consensus 7 mqIaMK~lPEak~~L~k 23 (56)
T PF10815_consen 7 MQIAMKYLPEAKEELDK 23 (56)
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 34588999997776654
No 205
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=23.60 E-value=1.8e+02 Score=20.52 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 9 LDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
..-..+.+..|++++++|++.|+.|..
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (127)
T TIGR02044 81 KARTLEKVAEIERKISELQSMRDQLEA 107 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556788888888888888877654
No 206
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.56 E-value=82 Score=19.50 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=21.5
Q ss_pred EEEEEecCCCcccHHHHHHHHHHcCceE
Q 046429 69 EVVLISGMQRNFMLYEVISILEEEGAQV 96 (137)
Q Consensus 69 eV~l~s~~~~~~~Ls~vl~vLeEeGl~V 96 (137)
+++++||+. .--+.++|..+.+.|+.+
T Consensus 2 ~~ll~~g~~-~~el~~~l~~~r~~~~~~ 28 (58)
T PF12646_consen 2 EFLLFSGFS-GEELDKFLDALRKAGIPI 28 (58)
T ss_pred CEEEECCCC-HHHHHHHHHHHHHcCCCc
Confidence 456788887 447999999999999833
No 207
>PF08965 DUF1870: Domain of unknown function (DUF1870); InterPro: IPR015060 This family consist of hypothetical bacterial proteins. ; PDB: 1S4K_A.
Probab=23.40 E-value=1.1e+02 Score=22.14 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 046429 18 QLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 18 ~Lq~kve~L~~kk~~L~~ 35 (137)
+-.+++.+|..+|.++..
T Consensus 46 ~Vie~l~~m~~~R~~~i~ 63 (118)
T PF08965_consen 46 DVIEELLEMKSQRKQRIN 63 (118)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677788888877665
No 208
>PF13606 Ank_3: Ankyrin repeat
Probab=23.29 E-value=54 Score=17.38 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=11.5
Q ss_pred HHHHHHHHHcCceE
Q 046429 83 YEVISILEEEGAQV 96 (137)
Q Consensus 83 s~vl~vLeEeGl~V 96 (137)
.++++.|.|.|++|
T Consensus 15 ~e~v~~Ll~~gadv 28 (30)
T PF13606_consen 15 IEIVKYLLEHGADV 28 (30)
T ss_pred HHHHHHHHHcCCCC
Confidence 47889999999875
No 209
>COG0347 GlnK Nitrogen regulatory protein PII [Amino acid transport and metabolism]
Probab=23.27 E-value=72 Score=22.95 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=15.3
Q ss_pred CcccHHHHHHHHHHcCc
Q 046429 78 RNFMLYEVISILEEEGA 94 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl 94 (137)
+|+.|.++.++|++.|+
T Consensus 9 RP~kl~~vkeaL~~~G~ 25 (112)
T COG0347 9 RPFKLDDVKEALEKAGV 25 (112)
T ss_pred CHHHhHHHHHHHHHcCC
Confidence 47899999999999993
No 210
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=23.23 E-value=66 Score=24.10 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=27.1
Q ss_pred CCeeEEEEEecCC--CcccHHHHHHHHHHcCceEEE
Q 046429 65 GSSIEVVLISGMQ--RNFMLYEVISILEEEGAQVVS 98 (137)
Q Consensus 65 ~~~~eV~l~s~~~--~~~~Ls~vl~vLeEeGl~Vvs 98 (137)
...+.|+.+|++. +.-.+-++++.|.|.|++-+=
T Consensus 61 ~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~ 96 (143)
T COG2185 61 EEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDIL 96 (143)
T ss_pred hcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceE
Confidence 4567788888885 778899999999999986543
No 211
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.10 E-value=1.9e+02 Score=20.08 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 9 LDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
..-.-+.+..|++++++|+..++.|..
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (123)
T cd04770 81 RALLEEKLAEVEAKIAELQALRAELAG 107 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333466777778888888877776654
No 212
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=23.04 E-value=1e+02 Score=20.38 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCceEEEeEEEeeCC
Q 046429 83 YEVISILEEEGAQVVSASFSTIGD 106 (137)
Q Consensus 83 s~vl~vLeEeGl~Vvsa~~s~~~~ 106 (137)
++|.+.|.+.|+.|.++.--...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~ 25 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRD 25 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccC
Confidence 578999999999999998765444
No 213
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=22.91 E-value=1.7e+02 Score=18.70 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 046429 9 LDLACCYIKQLRERIDKLNRMKEQAMKSI 37 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~kk~~L~~~~ 37 (137)
++--=+-|++|++++..|+..-.-|+...
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444568888888888876655566654
No 214
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=22.86 E-value=2.5e+02 Score=19.05 Aligned_cols=59 Identities=7% Similarity=0.032 Sum_probs=42.5
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEee-ccCcccchHHHHHHHhhhhC
Q 046429 77 QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAK-ISRLGVETSRACQRLHDLVD 137 (137)
Q Consensus 77 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~-~~~~~~d~~~l~~rL~~~i~ 137 (137)
++++-|++|-.+|-.-|+.+-|-+.+...+.-++-|-.-+. ... --...+...|+++++
T Consensus 11 N~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~--~~ieqI~kQL~Klid 70 (84)
T PRK13562 11 DQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD--TSLHILIKKLKQQIN 70 (84)
T ss_pred CCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH--HHHHHHHHHHhCCcc
Confidence 58999999999999999999998888766665555555553 222 122567777777664
No 215
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=22.84 E-value=82 Score=21.29 Aligned_cols=35 Identities=11% Similarity=0.283 Sum_probs=23.5
Q ss_pred EEEEecCC--CcccHHHHHHHHHHcCce--EEEeEEEee
Q 046429 70 VVLISGMQ--RNFMLYEVISILEEEGAQ--VVSASFSTI 104 (137)
Q Consensus 70 V~l~s~~~--~~~~Ls~vl~vLeEeGl~--Vvsa~~s~~ 104 (137)
|.++|+.+ ..++..++-+.++++|++ |..++.+.+
T Consensus 2 Il~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~ 40 (96)
T cd05564 2 ILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESEL 40 (96)
T ss_pred EEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHH
Confidence 44566654 557788999999999984 444444433
No 216
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=22.81 E-value=1.9e+02 Score=17.56 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046429 10 DLACCYIKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 10 ~eA~~YIk~Lq~kve~L~~kk~~L 33 (137)
+.+..||..|.+|++.+.+|=+.|
T Consensus 19 ~~v~~~lq~Lt~kL~~vs~RLe~L 42 (47)
T PF10393_consen 19 NKVTSALQSLTQKLDAVSKRLEAL 42 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678999999999888764433
No 217
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=22.68 E-value=1.1e+02 Score=15.90 Aligned_cols=14 Identities=43% Similarity=0.778 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHH
Q 046429 16 IKQLRERIDKLNRM 29 (137)
Q Consensus 16 Ik~Lq~kve~L~~k 29 (137)
|..|+.+|..|+.+
T Consensus 3 ~~rlr~rI~dLer~ 16 (23)
T PF04508_consen 3 MNRLRNRISDLERQ 16 (23)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777777644
No 218
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=22.63 E-value=1.9e+02 Score=20.48 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 12 ACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 12 A~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
.-+.+.+|++++++|++.++.|..
T Consensus 84 l~~~~~~l~~~i~~L~~~~~~L~~ 107 (127)
T TIGR02047 84 LDEHISHVRARIIKLQALIEQLVD 107 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888899999888887765
No 219
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.61 E-value=96 Score=24.97 Aligned_cols=21 Identities=38% Similarity=0.384 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046429 9 LDLACCYIKQLRERIDKLNRM 29 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~k 29 (137)
|..|...||+||+||..|+.-
T Consensus 57 Lk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 57 LKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 344556677777777777653
No 220
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=22.59 E-value=85 Score=25.70 Aligned_cols=31 Identities=35% Similarity=0.471 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHcCceEEEe---EEEeeCCeEEEE
Q 046429 81 MLYEVISILEEEGAQVVSA---SFSTIGDKIFHT 111 (137)
Q Consensus 81 ~Ls~vl~vLeEeGl~Vvsa---~~s~~~~r~fht 111 (137)
+-+.|..+|.++|+..|++ ++++.|+|+.|+
T Consensus 82 L~~~V~~~l~~~Gv~av~~~P~s~~~~~gr~~~~ 115 (252)
T COG1608 82 LNSIVVDALLDAGVRAVSVVPISFSTFNGRILYT 115 (252)
T ss_pred HHHHHHHHHHhcCCccccccCcceeecCCceeec
Confidence 4578999999999999764 455789999998
No 221
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=22.46 E-value=49 Score=21.82 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=12.5
Q ss_pred ccHHHHHHHHHHcCceEEE
Q 046429 80 FMLYEVISILEEEGAQVVS 98 (137)
Q Consensus 80 ~~Ls~vl~vLeEeGl~Vvs 98 (137)
=.+-+|+..|++.|++|++
T Consensus 39 e~id~i~~~L~~~gI~Vvd 57 (82)
T PF03979_consen 39 EQIDEIYDTLEDEGIEVVD 57 (82)
T ss_dssp HHHHHHHHHHHTT----B-
T ss_pred HHHHHHHHHHHHCCCEEec
Confidence 3688999999999999998
No 222
>PRK14011 prefoldin subunit alpha; Provisional
Probab=22.28 E-value=1.7e+02 Score=21.71 Aligned_cols=10 Identities=10% Similarity=-0.110 Sum_probs=7.3
Q ss_pred hHHHHHHHHH
Q 046429 8 RLDLACCYIK 17 (137)
Q Consensus 8 ~l~eA~~YIk 17 (137)
.+++|+.|++
T Consensus 85 ~~~eA~~~~~ 94 (144)
T PRK14011 85 DVSEVIEDFK 94 (144)
T ss_pred cHHHHHHHHH
Confidence 4678888766
No 223
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=22.24 E-value=2e+02 Score=20.22 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 12 ACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 12 A~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
..+.+..|++++++|++.++.|..
T Consensus 84 l~~~~~~l~~~i~~L~~~~~~L~~ 107 (127)
T cd04784 84 IDEHLAHVRARIAELQALEKQLQA 107 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888777654
No 224
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.78 E-value=78 Score=26.63 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 046429 10 DLACCYIKQLRERIDKLNRMKEQAMKSI 37 (137)
Q Consensus 10 ~eA~~YIk~Lq~kve~L~~kk~~L~~~~ 37 (137)
++...==++|++|-+||+.|-+||.+..
T Consensus 60 ~~~~~kq~eL~~rqeEL~Rke~ELdRRE 87 (313)
T KOG3088|consen 60 KDLAKKQAELLKKQEELRRKEQELDRRE 87 (313)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444456789999999988777887754
No 225
>PRK14631 hypothetical protein; Provisional
Probab=21.32 E-value=3.8e+02 Score=20.45 Aligned_cols=51 Identities=16% Similarity=0.269 Sum_probs=33.2
Q ss_pred HHHHHcCceEEEeEEEeeCCeEEEEEEEEee-----------------ccCccc-chHHHHHHHhhhhC
Q 046429 87 SILEEEGAQVVSASFSTIGDKIFHTVRAQAK-----------------ISRLGV-ETSRACQRLHDLVD 137 (137)
Q Consensus 87 ~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~-----------------~~~~~~-d~~~l~~rL~~~i~ 137 (137)
-++++.|++++...+..-+++.+-.|.-.-. ...+++ ||+++++.+-.++|
T Consensus 16 p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD 84 (174)
T PRK14631 16 PAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLD 84 (174)
T ss_pred HHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhc
Confidence 3466779999999998766544334433321 112333 68999999887764
No 226
>COG1591 Holliday junction resolvase - archaeal type [DNA replication, recombination, and repair]
Probab=21.28 E-value=3.1e+02 Score=20.48 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCceEEEeEEE-----------eeCCeEEEEEEEEeec-cCcccchHHHH
Q 046429 83 YEVISILEEEGAQVVSASFS-----------TIGDKIFHTVRAQAKI-SRLGVETSRAC 129 (137)
Q Consensus 83 s~vl~vLeEeGl~Vvsa~~s-----------~~~~r~fhtIh~qv~~-~~~~~d~~~l~ 129 (137)
-+++..|.|+|+.||-+-.| ..++.++..|-|+... ..+.+|.+.+.
T Consensus 11 ReLv~~L~e~GfAvvR~paSG~sk~p~pDivA~~g~~~l~iE~K~~~~~kiYl~~e~ve 69 (137)
T COG1591 11 RELVRILWERGFAVVRAPASGGSKRPLPDIVAGNGGVYLAIEVKSRRETKIYLDKEQVE 69 (137)
T ss_pred HHHHHHHHhcCceEEEcccCCCCCCCCCCEEecCCCEEEEEEEEeccCCcEEEcHHHHH
Confidence 36889999999999988222 1357889999999854 46788887764
No 227
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=21.25 E-value=1.9e+02 Score=17.06 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=25.4
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEE
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRA 114 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~ 114 (137)
.+....+++++|++.|+.|.--..+ .+.+-+++..
T Consensus 13 ~~~~~~~if~~l~~~~i~v~~i~t~--~~~is~~v~~ 47 (62)
T cd04890 13 EVGFLRKIFEILEKHGISVDLIPTS--ENSVTLYLDD 47 (62)
T ss_pred ccCHHHHHHHHHHHcCCeEEEEecC--CCEEEEEEeh
Confidence 5667899999999999988777542 2555555544
No 228
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.23 E-value=2.1e+02 Score=19.96 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=11.3
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHH
Q 046429 8 RLDLACCYIKQ----LRERIDKLNRM 29 (137)
Q Consensus 8 ~l~eA~~YIk~----Lq~kve~L~~k 29 (137)
.+++|.+|+++ |++.+++|++.
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~ 109 (129)
T cd00584 84 DLEEAIEFLDKKIEELTKQIEKLQKE 109 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677766543 44444444443
No 229
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=21.19 E-value=2e+02 Score=19.59 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=15.8
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHh
Q 046429 9 LDLACCY----IKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 9 l~eA~~Y----Ik~Lq~kve~L~~kk~~L~ 34 (137)
+++|.+| |+.|+++++++.++.+++.
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~ 104 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQ 104 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566665 4556666666666655544
No 230
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=20.97 E-value=1.6e+02 Score=17.26 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046429 11 LACCYIKQLRERIDKLNRM 29 (137)
Q Consensus 11 eA~~YIk~Lq~kve~L~~k 29 (137)
.|-.+||.|-.++++|.+|
T Consensus 9 aaKe~IKsLt~QlK~maek 27 (39)
T PF13713_consen 9 AAKEVIKSLTAQLKDMAEK 27 (39)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3557899999999999776
No 231
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=20.94 E-value=2e+02 Score=24.15 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=26.9
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 4 SQEDRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 4 s~~d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
++++.+..++..++.+-.+|+.|+..|+.+..
T Consensus 185 ~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~ 216 (353)
T cd09236 185 SIPPELERHVRALRVSLEELDRLESRRRRKVE 216 (353)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999987654
No 232
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.86 E-value=2.1e+02 Score=20.03 Aligned_cols=26 Identities=4% Similarity=-0.059 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 10 DLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 10 ~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
....+.+..|++++++|++.++.|..
T Consensus 83 ~~l~~~~~~l~~~~~~l~~~~~~L~~ 108 (118)
T cd04776 83 EKIEKRRAELEQQRRDIDAALAELDA 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777766665543
No 233
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.80 E-value=2e+02 Score=22.77 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHh
Q 046429 10 DLACCYIKQLRE-----RIDKLNRMKEQAM 34 (137)
Q Consensus 10 ~eA~~YIk~Lq~-----kve~L~~kk~~L~ 34 (137)
.|-=+++++.|+ ++|+|+++|.|.+
T Consensus 82 ~efq~e~~eA~~~~d~~~lkkLq~~qmem~ 111 (201)
T COG1422 82 KEFQKEFREAQESGDMKKLKKLQEKQMEMM 111 (201)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 333445555554 5666666665543
No 234
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=20.78 E-value=84 Score=25.53 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHH
Q 046429 16 IKQLRERIDKLNRM 29 (137)
Q Consensus 16 Ik~Lq~kve~L~~k 29 (137)
||.+++||++|+.+
T Consensus 57 L~~a~~ri~eLe~q 70 (247)
T PF09849_consen 57 LKQAQARIQELEAQ 70 (247)
T ss_pred HHHHHHHHHHHHHH
Confidence 78899999999876
No 235
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=20.72 E-value=2.1e+02 Score=21.17 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=26.6
Q ss_pred EEEEecC--CCcccHHHHHHHHHHcCceEEEeEEEeeCC
Q 046429 70 VVLISGM--QRNFMLYEVISILEEEGAQVVSASFSTIGD 106 (137)
Q Consensus 70 V~l~s~~--~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~ 106 (137)
|..||-+ ++++.|-.++..|.|+|+.+---+..-.++
T Consensus 3 vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~d 41 (142)
T COG4747 3 VKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGD 41 (142)
T ss_pred eeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccC
Confidence 3445544 489999999999999999876655544444
No 236
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=20.47 E-value=3.5e+02 Score=19.81 Aligned_cols=50 Identities=10% Similarity=0.267 Sum_probs=31.8
Q ss_pred HHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCccc-chHHHHHHHhhhhC
Q 046429 87 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGV-ETSRACQRLHDLVD 137 (137)
Q Consensus 87 ~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~-d~~~l~~rL~~~i~ 137 (137)
.++++.|++++...+...++.-.=.|...-.++ +++ ||+++++.+...+|
T Consensus 15 ~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~g-v~iddc~~~Sr~is~~LD 65 (154)
T PRK00092 15 PVVEALGYELVDVEYVKEGRDSTLRIYIDKEGG-IDLDDCEEVSRQISAVLD 65 (154)
T ss_pred HHHHHCCCEEEEEEEEecCCCcEEEEEEECCCC-CCHHHHHHHHHHHHHHhc
Confidence 455667999999999876554443444433232 333 57888888776654
No 237
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=20.44 E-value=2.3e+02 Score=19.09 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046429 9 LDLACCYIKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~kk~~L 33 (137)
.....++...|++++++|++.++.|
T Consensus 75 ~~~l~~~~~~l~~~i~~l~~~~~~l 99 (103)
T cd01106 75 LEALREQKELLEEKKERLDKLIKTI 99 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555554443
No 238
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.36 E-value=1.5e+02 Score=20.03 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 046429 16 IKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 16 Ik~Lq~kve~L~~kk~~L 33 (137)
++.|+++++.|+.++..+
T Consensus 72 ~~~l~~~l~~l~~~~~~~ 89 (104)
T PF13600_consen 72 LKELEEELEALEDELAAL 89 (104)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666665555444
No 239
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=20.36 E-value=2.1e+02 Score=17.82 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=16.8
Q ss_pred CCcccHHHHHHHHHHcCc--eEE
Q 046429 77 QRNFMLYEVISILEEEGA--QVV 97 (137)
Q Consensus 77 ~~~~~Ls~vl~vLeEeGl--~Vv 97 (137)
+.+..+.+++..|.+.|+ +++
T Consensus 11 ~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 11 NENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred CCccHHHHHHHHHHHcCCcEEEE
Confidence 356788999999999984 555
No 240
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=20.24 E-value=3.6e+02 Score=24.06 Aligned_cols=45 Identities=13% Similarity=0.043 Sum_probs=31.2
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEE--EEEEEEeec
Q 046429 74 SGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIF--HTVRAQAKI 118 (137)
Q Consensus 74 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~f--htIh~qv~~ 118 (137)
+-.++++.|.++|.+|++.|+.+..=-|--..++.+ |.+...++.
T Consensus 37 sL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg 83 (464)
T TIGR01270 37 SLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVEL 83 (464)
T ss_pred ECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEc
Confidence 334578999999999999999998877643333322 555555543
No 241
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=20.03 E-value=1.7e+02 Score=22.16 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=23.7
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeC
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIG 105 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~ 105 (137)
....|.++++.+.+.|..++|.-.+.+.
T Consensus 73 S~~lL~~~~~~~~~~g~~i~niD~tii~ 100 (157)
T PF02542_consen 73 SRILLKEVVELLREKGYRIVNIDITIIA 100 (157)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHcCcEEEEEEEEEEc
Confidence 3468999999999999999999886543
Done!