Query 046429
Match_columns 137
No_of_seqs 103 out of 139
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 21:09:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hlo_A Protein (transcription 97.1 0.0005 1.7E-08 45.2 4.3 33 3-35 46-78 (80)
2 1nkp_B MAX protein, MYC proto- 97.1 0.00078 2.7E-08 44.5 4.8 33 3-35 36-68 (83)
3 1am9_A Srebp-1A, protein (ster 96.9 0.0013 4.5E-08 43.5 4.8 34 3-36 39-72 (82)
4 1nlw_A MAD protein, MAX dimeri 96.5 0.0045 1.5E-07 40.9 4.8 33 3-35 36-68 (80)
5 1zpv_A ACT domain protein; str 96.4 0.057 1.9E-06 34.8 9.8 60 73-135 10-69 (91)
6 1a0a_A BHLH, protein (phosphat 95.5 0.0033 1.1E-07 39.8 0.7 22 2-23 40-61 (63)
7 1nkp_A C-MYC, MYC proto-oncoge 95.3 0.026 8.9E-07 37.7 4.6 31 4-34 42-72 (88)
8 1u8s_A Glycine cleavage system 95.2 0.13 4.6E-06 37.7 8.9 60 72-135 10-69 (192)
9 2nyi_A Unknown protein; protei 94.5 0.21 7.1E-06 37.1 8.4 66 70-135 7-72 (195)
10 2ko1_A CTR148A, GTP pyrophosph 93.6 0.33 1.1E-05 30.5 7.0 60 73-135 10-69 (88)
11 1u8s_A Glycine cleavage system 93.3 0.63 2.2E-05 34.0 9.0 64 69-135 94-165 (192)
12 4ati_A MITF, microphthalmia-as 93.1 0.088 3E-06 37.0 3.7 27 4-30 64-90 (118)
13 2ql2_B Neurod1, neurogenic dif 92.8 0.052 1.8E-06 33.8 2.0 22 3-24 37-58 (60)
14 3u5v_A Protein MAX, transcript 92.7 0.076 2.6E-06 34.6 2.7 23 5-27 43-65 (76)
15 2nyi_A Unknown protein; protei 92.6 0.71 2.4E-05 34.2 8.5 62 70-135 95-162 (195)
16 3he4_B Synzip5; heterodimeric 90.8 0.45 1.6E-05 27.4 4.3 30 6-35 2-31 (46)
17 3p96_A Phosphoserine phosphata 89.4 1.2 4.2E-05 36.0 7.5 63 71-135 15-77 (415)
18 1mdy_A Protein (MYOD BHLH doma 88.6 0.11 3.9E-06 33.1 0.6 22 3-24 46-67 (68)
19 1an4_A Protein (upstream stimu 87.9 0.096 3.3E-06 32.6 -0.1 21 3-23 43-63 (65)
20 3lou_A Formyltetrahydrofolate 86.6 3.1 0.00011 33.1 8.1 65 71-135 13-79 (292)
21 4ath_A MITF, microphthalmia-as 86.3 0.89 3E-05 30.2 4.0 24 8-31 33-56 (83)
22 3o1l_A Formyltetrahydrofolate 85.9 3.4 0.00012 33.1 8.0 64 70-135 24-89 (302)
23 3n0v_A Formyltetrahydrofolate 85.5 3.8 0.00013 32.4 8.1 62 71-135 11-74 (286)
24 3obi_A Formyltetrahydrofolate 85.3 4.1 0.00014 32.3 8.2 63 71-135 9-73 (288)
25 1y7p_A Hypothetical protein AF 84.8 2.1 7.1E-05 33.2 6.0 57 74-135 10-70 (223)
26 4h10_B Circadian locomoter out 82.3 0.89 3E-05 29.2 2.5 22 5-26 43-64 (71)
27 4aya_A DNA-binding protein inh 77.9 1.5 5.2E-05 29.8 2.7 23 3-25 60-82 (97)
28 2jhe_A Transcription regulator 77.9 6.3 0.00021 27.2 6.2 57 73-135 5-61 (190)
29 2f1f_A Acetolactate synthase i 77.9 2.8 9.6E-05 30.7 4.4 60 76-137 11-70 (164)
30 1kd8_B GABH BLL, GCN4 acid bas 76.1 3 0.0001 23.3 3.1 19 16-34 3-21 (36)
31 3twe_A Alpha4H; unknown functi 75.6 4.4 0.00015 20.8 3.4 20 10-29 4-23 (27)
32 2pc6_A Probable acetolactate s 74.3 3.8 0.00013 30.1 4.3 58 76-137 12-71 (165)
33 2jee_A YIIU; FTSZ, septum, coi 73.9 5.1 0.00018 26.3 4.4 29 6-34 12-40 (81)
34 3nrb_A Formyltetrahydrofolate 72.5 17 0.00058 28.6 8.0 61 71-135 10-72 (287)
35 2wq1_A General control protein 71.9 4.5 0.00015 22.2 3.1 19 16-34 2-20 (33)
36 1m45_B IQ2, IQ2 motif from MYO 69.6 7.2 0.00024 19.8 3.3 18 8-28 1-18 (26)
37 2oxj_A Hybrid alpha/beta pepti 67.7 6.2 0.00021 21.7 3.1 20 16-35 3-22 (34)
38 1r48_A Proline/betaine transpo 67.5 7.3 0.00025 21.2 3.4 24 13-36 7-30 (33)
39 1gd2_E Transcription factor PA 67.3 5.9 0.0002 25.2 3.4 21 13-33 28-48 (70)
40 3c3g_A Alpha/beta peptide with 67.2 6.5 0.00022 21.5 3.1 19 16-34 2-20 (33)
41 1xkm_B Distinctin chain B; por 66.8 6.8 0.00023 19.9 2.9 18 8-25 5-22 (26)
42 2fgc_A Acetolactate synthase, 66.4 15 0.00053 27.6 6.2 57 77-137 38-96 (193)
43 2l5g_A GPS2 protein, G protein 63.6 16 0.00054 20.6 4.3 26 8-33 9-34 (38)
44 2f06_A Conserved hypothetical 60.2 37 0.0013 23.0 8.5 50 77-134 81-130 (144)
45 1g1e_B SIN3A; four-helix bundl 60.1 6.1 0.00021 26.0 2.6 20 4-23 5-24 (89)
46 1e91_A Paired amphipathic heli 59.2 6.3 0.00021 25.7 2.5 22 4-25 2-23 (85)
47 1jnm_A Proto-oncogene C-JUN; B 58.5 11 0.00039 22.8 3.5 23 13-35 21-43 (62)
48 3c3f_A Alpha/beta peptide with 58.1 12 0.00041 20.6 3.1 19 16-34 3-21 (34)
49 2hy6_A General control protein 57.1 12 0.00039 20.6 2.9 19 16-34 3-21 (34)
50 2oqq_A Transcription factor HY 56.6 14 0.0005 21.2 3.4 22 14-35 3-24 (42)
51 2dgc_A Protein (GCN4); basic d 56.4 14 0.00047 22.8 3.6 23 13-35 29-51 (63)
52 1kd8_A GABH AIV, GCN4 acid bas 56.1 12 0.00041 20.8 2.9 19 16-34 3-21 (36)
53 3m48_A General control protein 55.8 8.1 0.00028 21.2 2.1 18 17-34 3-20 (33)
54 2wt7_A Proto-oncogene protein 54.7 14 0.00049 22.5 3.5 23 13-35 22-44 (63)
55 2r2v_A GCN4 leucine zipper; co 54.4 15 0.00051 20.2 3.1 18 16-33 3-20 (34)
56 4h10_A ARYL hydrocarbon recept 54.1 5.9 0.0002 25.2 1.7 18 4-21 46-63 (73)
57 2bni_A General control protein 51.8 16 0.00054 20.1 2.9 19 16-34 3-21 (34)
58 2f05_A Paired amphipathic heli 51.1 9.9 0.00034 25.9 2.5 22 4-25 2-23 (105)
59 1t2k_D Cyclic-AMP-dependent tr 48.8 20 0.00069 21.5 3.5 22 14-35 22-43 (61)
60 1zme_C Proline utilization tra 47.6 23 0.00078 21.1 3.6 23 13-35 43-65 (70)
61 1dh3_A Transcription factor CR 47.1 25 0.00085 21.0 3.6 22 14-35 22-43 (55)
62 1uo4_A General control protein 46.5 21 0.00073 19.6 2.9 19 16-34 3-21 (34)
63 4dzo_A Mitotic spindle assembl 44.1 19 0.00067 25.0 3.2 22 14-35 4-25 (123)
64 3fx7_A Putative uncharacterize 43.1 24 0.00083 23.7 3.4 21 9-29 65-85 (94)
65 2er8_A Regulatory protein Leu3 41.7 21 0.0007 21.6 2.7 17 13-29 48-64 (72)
66 2d0o_B DIOL dehydratase-reacti 40.6 26 0.0009 24.5 3.5 28 70-97 10-37 (125)
67 3azd_A Short alpha-tropomyosin 39.2 8 0.00027 21.5 0.4 22 12-33 2-23 (37)
68 1p9i_A Cortexillin I/GCN4 hybr 38.5 24 0.00084 18.5 2.2 13 17-29 16-28 (31)
69 3s4r_A Vimentin; alpha-helix, 37.0 34 0.0012 22.5 3.4 23 13-35 55-77 (93)
70 2czy_A Paired amphipathic heli 36.5 22 0.00074 22.6 2.3 19 7-25 2-20 (77)
71 3ol1_A Vimentin; structural ge 36.5 33 0.0011 23.4 3.4 21 14-34 20-40 (119)
72 1q08_A Zn(II)-responsive regul 36.3 57 0.0019 20.6 4.4 29 7-35 39-67 (99)
73 1ib8_A Conserved protein SP14. 35.5 1.2E+02 0.0041 21.7 7.6 55 82-137 14-69 (164)
74 2yy0_A C-MYC-binding protein; 33.6 47 0.0016 19.7 3.3 21 15-35 27-47 (53)
75 2js5_A Uncharacterized protein 33.3 29 0.00099 22.1 2.4 18 16-33 5-22 (71)
76 1lq7_A Alpha3W; three helix bu 31.7 40 0.0014 20.5 2.8 18 16-33 27-44 (67)
77 1ci6_A Transcription factor AT 31.2 60 0.0021 19.6 3.6 22 14-35 23-44 (63)
78 1hwt_C Protein (heme activator 30.8 38 0.0013 20.7 2.7 17 13-29 57-73 (81)
79 3w03_C DNA repair protein XRCC 30.5 62 0.0021 24.1 4.2 32 4-35 142-173 (184)
80 3fs3_A Nucleosome assembly pro 30.0 48 0.0016 27.3 3.8 28 2-29 44-71 (359)
81 3p01_A Two-component response 29.5 20 0.00069 24.6 1.4 27 8-34 4-30 (184)
82 3zrx_A AF1503 protein, osmolar 29.1 94 0.0032 18.7 4.5 31 5-35 35-65 (115)
83 3zcc_A HAMP, osmolarity sensor 29.0 95 0.0032 18.7 4.5 30 6-35 36-65 (114)
84 2zqm_A Prefoldin beta subunit 28.4 1.1E+02 0.0036 20.0 4.8 32 4-35 3-34 (117)
85 2esh_A Conserved hypothetical 28.4 84 0.0029 20.6 4.3 35 78-112 47-82 (118)
86 2fi0_A Conserved domain protei 28.2 34 0.0012 21.6 2.2 21 78-98 59-79 (81)
87 2xu6_A MDV1 coiled coil; prote 27.8 82 0.0028 20.0 3.9 24 11-34 18-41 (72)
88 3l7w_A Putative uncharacterize 27.0 1.2E+02 0.0041 19.6 4.9 33 78-112 39-73 (108)
89 1d66_A Protein (GAL4); protein 27.0 16 0.00056 21.4 0.4 15 13-27 51-65 (66)
90 1lrz_A FEMA, factor essential 26.7 49 0.0017 26.8 3.4 22 14-35 247-268 (426)
91 1e2b_A Enzyme IIB-cellobiose; 26.7 49 0.0017 21.8 2.9 28 69-96 5-34 (106)
92 3dtn_A Putative methyltransfer 26.4 1.2E+02 0.0041 21.4 5.2 32 79-110 191-222 (234)
93 1pyi_A Protein (pyrimidine pat 26.3 58 0.002 20.5 3.1 20 13-32 47-66 (96)
94 3gpv_A Transcriptional regulat 26.1 90 0.0031 21.7 4.3 29 7-35 95-123 (148)
95 1yf2_A Type I restriction-modi 26.0 85 0.0029 24.2 4.6 29 8-36 387-415 (425)
96 2cr7_A Paired amphipathic heli 25.7 15 0.0005 23.6 0.0 23 3-25 4-26 (80)
97 2dnr_A Synaptojanin-1; RRM dom 25.6 1.4E+02 0.005 19.5 6.1 45 65-112 7-56 (91)
98 1q06_A Transcriptional regulat 25.1 1E+02 0.0036 20.9 4.5 29 8-36 80-108 (135)
99 1r1t_A Transcriptional repress 25.1 1.3E+02 0.0046 19.8 4.9 32 78-113 72-103 (122)
100 1yf2_A Type I restriction-modi 25.0 91 0.0031 24.0 4.6 29 7-35 176-204 (425)
101 3gp4_A Transcriptional regulat 24.7 1E+02 0.0035 21.3 4.3 26 9-34 83-108 (142)
102 1pd7_B MAD1; PAH2, SIN3, eukar 24.6 79 0.0027 16.2 2.7 14 8-21 7-20 (26)
103 2wuj_A Septum site-determining 24.6 47 0.0016 19.8 2.2 21 9-29 29-49 (57)
104 3lt7_A Adhesin YADA; adhesion, 24.4 96 0.0033 19.3 3.6 23 7-29 23-49 (64)
105 3coq_A Regulatory protein GAL4 24.1 54 0.0018 20.2 2.6 17 13-29 44-60 (89)
106 1tif_A IF3-N, translation init 24.0 1.5E+02 0.005 19.0 4.7 21 80-100 29-49 (78)
107 3ri2_A Transcriptional regulat 23.7 80 0.0027 21.4 3.6 35 78-112 51-85 (123)
108 1ydx_A Type I restriction enzy 23.2 1E+02 0.0035 24.1 4.6 30 7-36 362-391 (406)
109 3aei_A Prefoldin beta subunit 23.1 1.3E+02 0.0043 19.7 4.2 28 8-35 58-89 (99)
110 3elk_A Putative transcriptiona 23.0 1E+02 0.0034 20.5 4.0 34 79-112 47-81 (117)
111 1vlm_A SAM-dependent methyltra 23.0 1.4E+02 0.0048 20.9 5.0 27 80-106 166-192 (219)
112 1iv3_A 2-C-methyl-D-erythritol 22.6 92 0.0031 22.5 3.8 28 78-105 73-100 (152)
113 1nbw_B Glycerol dehydratase re 22.4 66 0.0023 22.2 2.9 18 78-95 18-35 (117)
114 3re3_A 2-C-methyl-D-erythritol 22.3 1E+02 0.0035 22.5 4.0 28 78-105 79-106 (162)
115 1gx1_A 2-C-methyl-D-erythritol 22.1 1E+02 0.0035 22.4 4.0 28 78-105 74-101 (160)
116 1r8d_A Transcription activator 22.1 1.3E+02 0.0043 19.5 4.3 27 8-34 76-102 (109)
117 1t0a_A 2C-methyl-D-erythritol 21.7 99 0.0034 22.5 3.8 28 78-105 75-102 (159)
118 2djv_A Methionyl-tRNA syntheta 21.5 92 0.0032 19.8 3.3 19 8-26 41-59 (79)
119 2lw9_A Unconventionnal myosin- 21.4 92 0.0031 18.4 2.9 23 13-35 5-27 (51)
120 3k29_A Putative uncharacterize 21.2 1.4E+02 0.0047 22.0 4.5 30 4-33 68-97 (169)
121 1xma_A Predicted transcription 21.2 1.2E+02 0.0041 21.0 4.2 35 78-112 75-110 (145)
122 1r1u_A CZRA, repressor protein 20.9 1.7E+02 0.0057 18.5 4.9 31 78-112 52-82 (106)
123 2uzh_A 2C-methyl-D-erythritol 20.5 1.1E+02 0.0036 22.5 3.8 28 78-105 78-105 (165)
124 4esf_A PADR-like transcription 20.2 1.5E+02 0.005 19.7 4.3 35 78-112 43-78 (117)
125 3f0d_A 2-C-methyl-D-erythritol 20.1 1.1E+02 0.0037 22.8 3.8 28 78-105 96-123 (183)
126 1whz_A Hypothetical protein; a 20.0 97 0.0033 18.5 3.1 21 79-99 4-24 (70)
No 1
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=97.13 E-value=0.0005 Score=45.23 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=29.2
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 3 LSQEDRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 3 ~s~~d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
+|-.+.|..|+.||++||+++++|+.+.++|..
T Consensus 46 ~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 46 ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566788999999999999999999999888753
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=97.08 E-value=0.00078 Score=44.51 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=28.4
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 3 LSQEDRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 3 ~s~~d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
+|-.+.|..|++||++||+++++|..++++|..
T Consensus 36 ~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 36 ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999999999988887754
No 3
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=96.91 E-value=0.0013 Score=43.53 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=29.6
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046429 3 LSQEDRLDLACCYIKQLRERIDKLNRMKEQAMKS 36 (137)
Q Consensus 3 ~s~~d~l~eA~~YIk~Lq~kve~L~~kk~~L~~~ 36 (137)
++-.+.|.+|+.||++||.+++.|.++.+.|...
T Consensus 39 ~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~ 72 (82)
T 1am9_A 39 LNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA 72 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999998888653
No 4
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=96.46 E-value=0.0045 Score=40.90 Aligned_cols=33 Identities=21% Similarity=0.079 Sum_probs=28.6
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 3 LSQEDRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 3 ~s~~d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
+|-.+.|..|+.||++||++.++|...+++|..
T Consensus 36 ~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 36 HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999998887754
No 5
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.36 E-value=0.057 Score=34.76 Aligned_cols=60 Identities=8% Similarity=0.089 Sum_probs=48.7
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 73 ISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 73 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
+.+.++++.|++|..+|-+.|+++.+.+....++..+-.+..++.+ ..+...|.++|+++
T Consensus 10 v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~---~~~l~~l~~~L~~~ 69 (91)
T 1zpv_A 10 VVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE---KQDFTYLRNEFEAF 69 (91)
T ss_dssp EEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS---CCCHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC---CCCHHHHHHHHHHH
Confidence 5667899999999999999999999999887777666666666544 35678899998865
No 6
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=95.49 E-value=0.0033 Score=39.77 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.1
Q ss_pred CCChhhhHHHHHHHHHHHHHHH
Q 046429 2 MLSQEDRLDLACCYIKQLRERI 23 (137)
Q Consensus 2 ~~s~~d~l~eA~~YIk~Lq~kv 23 (137)
.+|-.+.|+.|+.||++||+++
T Consensus 40 k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 40 APSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccHHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999999865
No 7
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=95.25 E-value=0.026 Score=37.74 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=24.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046429 4 SQEDRLDLACCYIKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 4 s~~d~l~eA~~YIk~Lq~kve~L~~kk~~L~ 34 (137)
|-...|..|+.||++||.+...+...+++|.
T Consensus 42 sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 42 PKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446789999999999999988776665543
No 8
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.21 E-value=0.13 Score=37.74 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=48.1
Q ss_pred EEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 72 LISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 72 l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
.+++.++++.+++|-.+|.+.|++++++......+..|-++...... -+...|.+.|.++
T Consensus 10 tv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~----~~~~~l~~~L~~~ 69 (192)
T 1u8s_A 10 TAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP----SNITRVETTLPLL 69 (192)
T ss_dssp EEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH----HHHHHHHHHHHHH
T ss_pred EEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC----CCHHHHHHHHHHH
Confidence 34566889999999999999999999999888888888888887542 3567777777654
No 9
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.52 E-value=0.21 Score=37.11 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=47.3
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 70 VVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 70 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
++.+++.++++.++.|-.+|.+.|+++++|.-....++.|=++..............+|.+.|..+
T Consensus 7 ~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~~~~~l~~~L~~~ 72 (195)
T 2nyi_A 7 VVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALPGF 72 (195)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHSTTC
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchhHHHHHHHHHHHH
Confidence 334566789999999999999999999999988888877777777653210001146666666543
No 10
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=93.65 E-value=0.33 Score=30.53 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=42.7
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 73 ISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 73 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
+...++++.|.+|..+|.+.|+.+.+......++.....+..++.+ .-+...+-++|+++
T Consensus 10 v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~---~~~l~~l~~~L~~~ 69 (88)
T 2ko1_A 10 IVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKN---TDKLTTLMDKLRKV 69 (88)
T ss_dssp EEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESS---HHHHHHHHHHHTTC
T ss_pred EEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECC---HHHHHHHHHHHhcC
Confidence 3455789999999999999999999998877666333444444433 23456777777653
No 11
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=93.31 E-value=0.63 Score=34.01 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=46.8
Q ss_pred EEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeC--------CeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 69 EVVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIG--------DKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 69 eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~--------~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
-++.+.+.++++.+++|..+|-+.|+++.++...+.+ +..|=.+.... +. +.+.+.|.+.|.++
T Consensus 94 ~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~--~~-~~~~~~l~~~l~~~ 165 (192)
T 1u8s_A 94 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARV--DS-GCNLMQLQEEFDAL 165 (192)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEE--CT-TSCHHHHHHHHHHH
T ss_pred EEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeC--CC-CCCHHHHHHHHHHH
Confidence 3444566788999999999999999999999876543 34443444443 22 66889999998765
No 12
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=93.09 E-value=0.088 Score=36.95 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=22.8
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 046429 4 SQEDRLDLACCYIKQLRERIDKLNRMK 30 (137)
Q Consensus 4 s~~d~l~eA~~YIk~Lq~kve~L~~kk 30 (137)
+-..-|..|+.||++||++++.|.+..
T Consensus 64 ~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 64 NKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999999998653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=92.84 E-value=0.052 Score=33.84 Aligned_cols=22 Identities=41% Similarity=0.434 Sum_probs=19.2
Q ss_pred CChhhhHHHHHHHHHHHHHHHH
Q 046429 3 LSQEDRLDLACCYIKQLRERID 24 (137)
Q Consensus 3 ~s~~d~l~eA~~YIk~Lq~kve 24 (137)
+|-.++|-.|++||.+||+.++
T Consensus 37 lSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 37 LSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 5777899999999999998764
No 14
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=92.69 E-value=0.076 Score=34.62 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 046429 5 QEDRLDLACCYIKQLRERIDKLN 27 (137)
Q Consensus 5 ~~d~l~eA~~YIk~Lq~kve~L~ 27 (137)
=...|..|+.||+.||+++++++
T Consensus 43 K~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 43 KLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678999999999999999874
No 15
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=92.63 E-value=0.71 Score=34.15 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=45.9
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeC------CeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 70 VVLISGMQRNFMLYEVISILEEEGAQVVSASFSTIG------DKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 70 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~------~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
++.++|.++++.+++|-.+|-+.|+++.++...+.+ ++.|=.+...... ..+ ..|.+.|..+
T Consensus 95 iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~---~~~-~~l~~~l~~~ 162 (195)
T 2nyi_A 95 ELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF---PLY-QEVVTALSRV 162 (195)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG---GGH-HHHHHHHHHH
T ss_pred EEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC---Ccc-HHHHHHHHHH
Confidence 444566789999999999999999999999987654 4444445544432 456 8888888754
No 16
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=90.79 E-value=0.45 Score=27.38 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 6 EDRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 6 ~d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
+.++.|--|||++|.++--+|+.-|+-|+.
T Consensus 2 sntvkelknyiqeleernaelknlkehlkf 31 (46)
T 3he4_B 2 SNTVKELKNYIQELEERNAELKNLKEHLKF 31 (46)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhHHHHhHHHHHHH
Confidence 457888999999999999999888877654
No 17
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=89.36 E-value=1.2 Score=35.98 Aligned_cols=63 Identities=8% Similarity=0.151 Sum_probs=51.7
Q ss_pred EEEecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 71 VLISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 71 ~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
..++|.++++..+.|-..|-+.|+++++++-+..+++.|=.+++.+... ..+.+.|.+.|..+
T Consensus 15 lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~--~~~~~~l~~~l~~~ 77 (415)
T 3p96_A 15 ITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPAD--VADGPALRHDVEAA 77 (415)
T ss_dssp EEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHH--HHTSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCC--cCCHHHHHHHHHHH
Confidence 3356778999999999999999999999999999999988888887653 23557788877654
No 18
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=88.65 E-value=0.11 Score=33.10 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=18.0
Q ss_pred CChhhhHHHHHHHHHHHHHHHH
Q 046429 3 LSQEDRLDLACCYIKQLRERID 24 (137)
Q Consensus 3 ~s~~d~l~eA~~YIk~Lq~kve 24 (137)
+|=.+.|-.|++||.+||+.++
T Consensus 46 lSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 46 LPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHc
Confidence 4556789999999999998653
No 19
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=87.88 E-value=0.096 Score=32.63 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=17.7
Q ss_pred CChhhhHHHHHHHHHHHHHHH
Q 046429 3 LSQEDRLDLACCYIKQLRERI 23 (137)
Q Consensus 3 ~s~~d~l~eA~~YIk~Lq~kv 23 (137)
++-.+.|..|+.||++||++.
T Consensus 43 ~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 43 QSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCTTTTTTTTHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHh
Confidence 466788999999999999764
No 20
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=86.60 E-value=3.1 Score=33.07 Aligned_cols=65 Identities=9% Similarity=0.082 Sum_probs=45.5
Q ss_pred EEEecCCCcccHHHHHHHHHHcCceEEEeEEEe--eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 71 VLISGMQRNFMLYEVISILEEEGAQVVSASFST--IGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 71 ~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~--~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
..++|.++++...+|-..|-+.|+++++++... ..++.|=.+.+...-+...++.+.|.+.|..+
T Consensus 13 Ltv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~l 79 (292)
T 3lou_A 13 LTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPI 79 (292)
T ss_dssp EEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHH
Confidence 345666889999999999999999999998773 44555544444443112247778898888654
No 21
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=86.25 E-value=0.89 Score=30.16 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 046429 8 RLDLACCYIKQLRERIDKLNRMKE 31 (137)
Q Consensus 8 ~l~eA~~YIk~Lq~kve~L~~kk~ 31 (137)
-|..|+.||++||+..+.+.+.-.
T Consensus 33 IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 33 ILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999998887766433
No 22
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=85.87 E-value=3.4 Score=33.07 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=46.7
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEEee--CCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 70 VVLISGMQRNFMLYEVISILEEEGAQVVSASFSTI--GDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 70 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~--~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
|..++|.++++...+|-..|-+.|+.+++++.+.- +++.|=.+ ++..+...++.+.|.+.|..+
T Consensus 24 iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~--~~~~~~~~~~~~~L~~~l~~l 89 (302)
T 3o1l_A 24 RLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRH--EIRADTLPFDLDGFREAFTPI 89 (302)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEE--EEEGGGSSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEE--EEecCCCCCCHHHHHHHHHHH
Confidence 33456778999999999999999999999987754 45544434 444333247788999888654
No 23
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=85.55 E-value=3.8 Score=32.44 Aligned_cols=62 Identities=11% Similarity=-0.031 Sum_probs=45.9
Q ss_pred EEEecCCCcccHHHHHHHHHHcCceEEEeEEEe--eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 71 VLISGMQRNFMLYEVISILEEEGAQVVSASFST--IGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 71 ~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~--~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
..++|.++++...+|-..|-+.|+++++.+.+. ..++.|=.+.+. .+. .++.+.|.+.|..+
T Consensus 11 Ltv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~--~~~-~~~~~~L~~~f~~l 74 (286)
T 3n0v_A 11 LTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFR--QPD-DFDEAGFRAGLAER 74 (286)
T ss_dssp EEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEE--CCS-SCCHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEe--cCC-CCCHHHHHHHHHHH
Confidence 345667889999999999999999999998763 345554444443 333 57889999888654
No 24
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=85.26 E-value=4.1 Score=32.30 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=47.0
Q ss_pred EEEecCCCcccHHHHHHHHHHcCceEEEeEEE--eeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 71 VLISGMQRNFMLYEVISILEEEGAQVVSASFS--TIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 71 ~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s--~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
..++|.++++...+|-..|-+.|+++++.+.. ..+++.|=.+.+.+.. ..++.+.|.+.|..+
T Consensus 9 Ltv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~~~L~~~f~~l 73 (288)
T 3obi_A 9 LTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAA--KVIPLASLRTGFGVI 73 (288)
T ss_dssp EEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESS--CCCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCC--CCCCHHHHHHHHHHH
Confidence 34566788999999999999999999999865 3455655555555543 246778898888654
No 25
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=84.79 E-value=2.1 Score=33.24 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=40.7
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEeeC----CeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 74 SGMQRNFMLYEVISILEEEGAQVVSASFSTIG----DKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 74 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~----~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
...++++.|++|+.+|-+++.++.+.+.+... +...+ ++.++.+. +..++-++|+++
T Consensus 10 ~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~-I~IEV~d~----~Le~LL~kLrkI 70 (223)
T 1y7p_A 10 IAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKAL-IYFEIEGG----DFEKILERVKTF 70 (223)
T ss_dssp EEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEE-EEEEECSS----CHHHHHHHHHTC
T ss_pred EEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEE-EEEEECCC----CHHHHHHHHhCC
Confidence 45678999999999999999999999987754 33333 33777652 889999999864
No 26
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=82.28 E-value=0.89 Score=29.19 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 046429 5 QEDRLDLACCYIKQLRERIDKL 26 (137)
Q Consensus 5 ~~d~l~eA~~YIk~Lq~kve~L 26 (137)
=.+-|..|+.||+.||+++.=|
T Consensus 43 K~sIL~~aI~yik~Lq~~~~~~ 64 (71)
T 4h10_B 43 KSTVLQKSIDFLRKHKEITAWL 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhhHH
Confidence 3456889999999999987544
No 27
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=77.95 E-value=1.5 Score=29.81 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=18.7
Q ss_pred CChhhhHHHHHHHHHHHHHHHHH
Q 046429 3 LSQEDRLDLACCYIKQLRERIDK 25 (137)
Q Consensus 3 ~s~~d~l~eA~~YIk~Lq~kve~ 25 (137)
||=-++|--|++||.+||+-++.
T Consensus 60 LSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 60 VSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHhc
Confidence 45557899999999999987754
No 28
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=77.94 E-value=6.3 Score=27.20 Aligned_cols=57 Identities=11% Similarity=0.060 Sum_probs=39.2
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 73 ISGMQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 73 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
+.+.++.++|.+|+.+|-+.|+++.+...... +. +..++.... .-+...+.++|+++
T Consensus 5 v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~----i~~~~~~~~-~~~~~~L~~~l~~i 61 (190)
T 2jhe_A 5 VFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR----IYLNFAELE-FESFSSLMAEIRRI 61 (190)
T ss_dssp EEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE----EEEEECCCC-HHHHHHHHHHHHHS
T ss_pred EEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE----EEEEEEeCC-HHHHHHHHHHHHcC
Confidence 35678899999999999999999999988654 33 334443211 22346666666553
No 29
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=77.91 E-value=2.8 Score=30.69 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=41.7
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHDLVD 137 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~i~ 137 (137)
.++++.|++|..+|.+.|+++.+.+.....+.-+..+...+... --..+.+..+|+++++
T Consensus 11 ~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d--~~~leqI~kqL~Kl~d 70 (164)
T 2f1f_A 11 ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGD--EKVLEQIEKQLHKLVD 70 (164)
T ss_dssp ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESC--HHHHHHHHHHHHHSTT
T ss_pred eCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEecc--HHHHHHHHHHHcCCCC
Confidence 47899999999999999999999887654432233343344322 2345778888887754
No 30
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=76.09 E-value=3 Score=23.30 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 046429 16 IKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 16 Ik~Lq~kve~L~~kk~~L~ 34 (137)
.++|+.|||+|..++.+|.
T Consensus 3 MnQLE~KVEeLl~~~~~Le 21 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLK 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 4788999999988886654
No 31
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=75.58 E-value=4.4 Score=20.78 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046429 10 DLACCYIKQLRERIDKLNRM 29 (137)
Q Consensus 10 ~eA~~YIk~Lq~kve~L~~k 29 (137)
+|--+-..+||+++.+|.+|
T Consensus 4 delykeledlqerlrklrkk 23 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55667788899999888765
No 32
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=74.32 E-value=3.8 Score=30.05 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=41.3
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEeeC--CeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 046429 76 MQRNFMLYEVISILEEEGAQVVSASFSTIG--DKIFHTVRAQAKISRLGVETSRACQRLHDLVD 137 (137)
Q Consensus 76 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~--~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~i~ 137 (137)
-++++.|++|..+|.+.|+++.+.+..... +..--||..+ .. --..+.+...|.++++
T Consensus 12 eNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~--~d--~~~leql~kQL~Kl~d 71 (165)
T 2pc6_A 12 ENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN--GP--DEIVEQITKQLNKLIE 71 (165)
T ss_dssp ECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE--EC--HHHHHHHHHHHHHSTT
T ss_pred eCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe--cc--HHHHHHHHHHhcCCCC
Confidence 368999999999999999999998876444 4444455554 22 1334777888877764
No 33
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=73.92 E-value=5.1 Score=26.31 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046429 6 EDRLDLACCYIKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 6 ~d~l~eA~~YIk~Lq~kve~L~~kk~~L~ 34 (137)
-..|.+|+.-|.-||..|++|++|...|.
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999876654
No 34
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=72.47 E-value=17 Score=28.63 Aligned_cols=61 Identities=18% Similarity=0.190 Sum_probs=41.3
Q ss_pred EEEecCCCcccHHHHHHHHHHcCceEEEeEEE-e-eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 046429 71 VLISGMQRNFMLYEVISILEEEGAQVVSASFS-T-IGDKIFHTVRAQAKISRLGVETSRACQRLHDL 135 (137)
Q Consensus 71 ~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s-~-~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~ 135 (137)
..++|.++++...+|-..|-+.|+++++++.. . .+++.|= ..++.... .+.+.|.+.|..+
T Consensus 10 Ltv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffm--r~~~~~~~--~~~~~L~~~f~~l 72 (287)
T 3nrb_A 10 LSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFM--RVSVEIPV--AGVNDFNSAFGKV 72 (287)
T ss_dssp EEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEE--EEEEECCC-----CHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEE--EEEEEcCC--CCHHHHHHHHHHH
Confidence 34566688999999999999999999999875 2 3444443 33443322 3456888887654
No 35
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=71.95 E-value=4.5 Score=22.16 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 046429 16 IKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 16 Ik~Lq~kve~L~~kk~~L~ 34 (137)
.++|..|||+|-.++.+|.
T Consensus 2 MnQLEdKVEell~~~~~le 20 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNT 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHH
Confidence 4678888888888876653
No 36
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=69.63 E-value=7.2 Score=19.80 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 046429 8 RLDLACCYIKQLRERIDKLNR 28 (137)
Q Consensus 8 ~l~eA~~YIk~Lq~kve~L~~ 28 (137)
++++|++| ||.+|+...-
T Consensus 1 qisqaiky---lqnnikgfii 18 (26)
T 1m45_B 1 QISQAIKY---LQNNIKGFII 18 (26)
T ss_dssp CHHHHHHH---HHHHHHHHHH
T ss_pred CHhHHHHH---HHhccceEEE
Confidence 46667655 7888887654
No 37
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=67.73 E-value=6.2 Score=21.73 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 046429 16 IKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 16 Ik~Lq~kve~L~~kk~~L~~ 35 (137)
..+|..||++|-.++++|..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~ 22 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEX 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHH
Confidence 46899999999998877653
No 38
>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1
Probab=67.47 E-value=7.3 Score=21.24 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 046429 13 CCYIKQLRERIDKLNRMKEQAMKS 36 (137)
Q Consensus 13 ~~YIk~Lq~kve~L~~kk~~L~~~ 36 (137)
-.+|..+.+.+.+|.+||+.|+..
T Consensus 7 e~~iedi~~ei~~l~~kr~~l~~q 30 (33)
T 1r48_A 7 EQKIDDIDHEIADLQAKRTRLVQQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHc
Confidence 468899999999999999988754
No 39
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=67.27 E-value=5.9 Score=25.20 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046429 13 CCYIKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 13 ~~YIk~Lq~kve~L~~kk~~L 33 (137)
-.||++|+.+|++|...-+.|
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999998766554
No 40
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=67.25 E-value=6.5 Score=21.51 Aligned_cols=19 Identities=5% Similarity=0.225 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 046429 16 IKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 16 Ik~Lq~kve~L~~kk~~L~ 34 (137)
.++|..|||+|-.++.+|-
T Consensus 2 MnQLEdKvEeLl~~~~~Le 20 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXE 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHH
Confidence 4789999999998887654
No 41
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=66.78 E-value=6.8 Score=19.89 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 046429 8 RLDLACCYIKQLRERIDK 25 (137)
Q Consensus 8 ~l~eA~~YIk~Lq~kve~ 25 (137)
-+-||-+|..+|..|++.
T Consensus 5 gliearkyleqlhrklkn 22 (26)
T 1xkm_B 5 GLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 356899999999988764
No 42
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=66.45 E-value=15 Score=27.58 Aligned_cols=57 Identities=9% Similarity=0.090 Sum_probs=40.8
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEeeC--CeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 046429 77 QRNFMLYEVISILEEEGAQVVSASFSTIG--DKIFHTVRAQAKISRLGVETSRACQRLHDLVD 137 (137)
Q Consensus 77 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~--~r~fhtIh~qv~~~~~~~d~~~l~~rL~~~i~ 137 (137)
++++.|++|..+|.+.|+++.+-+..... +..--||...-.+ -..+.|...|.++++
T Consensus 38 N~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e----~~ieqL~kQL~KLid 96 (193)
T 2fgc_A 38 NKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD----KTIEQIEKQAYKLVE 96 (193)
T ss_dssp CCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT----THHHHHHHHHTTSTT
T ss_pred CCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH----HHHHHHHHHhcCcCc
Confidence 68999999999999999999987765433 4444455554322 234778888887764
No 43
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=63.63 E-value=16 Score=20.55 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046429 8 RLDLACCYIKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 8 ~l~eA~~YIk~Lq~kve~L~~kk~~L 33 (137)
++.|.=.-|-.|+.|++.|++.|-+|
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778899999999999988765
No 44
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=60.20 E-value=37 Score=23.00 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=34.3
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 046429 77 QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSRACQRLHD 134 (137)
Q Consensus 77 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~~d~~~l~~rL~~ 134 (137)
++++.+.+++++|.++|+.+.+..++.-+++..-.|.. . |..+..+.|++
T Consensus 81 d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~--~------d~~~A~~~L~~ 130 (144)
T 2f06_A 81 NVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP--S------NMDKCIEVLKE 130 (144)
T ss_dssp SSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE--S------CHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe--C------CHHHHHHHHHH
Confidence 58999999999999999999775543245554444433 2 55666666554
No 45
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=60.12 E-value=6.1 Score=26.04 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=17.5
Q ss_pred ChhhhHHHHHHHHHHHHHHH
Q 046429 4 SQEDRLDLACCYIKQLRERI 23 (137)
Q Consensus 4 s~~d~l~eA~~YIk~Lq~kv 23 (137)
+.|-++++|++|++..|.+-
T Consensus 5 ~~~~~~~~A~~YvnkVK~rF 24 (89)
T 1g1e_B 5 NQPVEFNHAINYVNKIKNRF 24 (89)
T ss_dssp CCTHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 45778999999999999984
No 46
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=59.24 E-value=6.3 Score=25.71 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=18.6
Q ss_pred ChhhhHHHHHHHHHHHHHHHHH
Q 046429 4 SQEDRLDLACCYIKQLRERIDK 25 (137)
Q Consensus 4 s~~d~l~eA~~YIk~Lq~kve~ 25 (137)
+.|-.+++|++|++..+.+-..
T Consensus 2 ~~~~~~~~A~~yv~kVK~rF~~ 23 (85)
T 1e91_A 2 SDSVEFNNAISYVNKIKTRFLD 23 (85)
T ss_dssp CSCHHHHHHHHHHHHHHHHTSS
T ss_pred CCCccHHHHHHHHHHHHHHHhc
Confidence 4577899999999999988654
No 47
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=58.53 E-value=11 Score=22.83 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 046429 13 CCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 13 ~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
-.||.+|+.+++.|....++|..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999888765
No 48
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=58.09 E-value=12 Score=20.55 Aligned_cols=19 Identities=5% Similarity=0.121 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 046429 16 IKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 16 Ik~Lq~kve~L~~kk~~L~ 34 (137)
.++|..|||+|-.++.+|-
T Consensus 3 MnQLEdKVEeLl~~~~~Le 21 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHH
Confidence 4678889999888876653
No 49
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=57.15 E-value=12 Score=20.64 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 046429 16 IKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 16 Ik~Lq~kve~L~~kk~~L~ 34 (137)
.++|..|||+|-.++.+|-
T Consensus 3 MnQLEdkVEeLl~~~~~Le 21 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLA 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 3688999999988886654
No 50
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=56.60 E-value=14 Score=21.20 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 046429 14 CYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 14 ~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
.|..+|..|+++|+.+=.+|-.
T Consensus 3 aYl~eLE~r~k~le~~naeLEe 24 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEE 24 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999988777643
No 51
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=56.38 E-value=14 Score=22.75 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 046429 13 CCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 13 ~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
..|+.+|+.+|+.|+.+..+|..
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999988877764
No 52
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=56.10 E-value=12 Score=20.82 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 046429 16 IKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 16 Ik~Lq~kve~L~~kk~~L~ 34 (137)
.++|..||++|-.++..|-
T Consensus 3 MnQLE~kVEeLl~~~~~Le 21 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLE 21 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 3678888888888776553
No 53
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=55.84 E-value=8.1 Score=21.16 Aligned_cols=18 Identities=17% Similarity=0.184 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 046429 17 KQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 17 k~Lq~kve~L~~kk~~L~ 34 (137)
.+|..||++|-.++.+|-
T Consensus 3 ~QLE~kVEeLl~~n~~Le 20 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLE 20 (33)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHH
Confidence 578899999988886654
No 54
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=54.66 E-value=14 Score=22.50 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 046429 13 CCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 13 ~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
-.||.+|+.+++.|+...+.|..
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999988777654
No 55
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=54.40 E-value=15 Score=20.19 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 046429 16 IKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 16 Ik~Lq~kve~L~~kk~~L 33 (137)
.++|..|||+|-.++..|
T Consensus 3 MnQledKvEel~~~~~~l 20 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHN 20 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHH
Confidence 478888898888887554
No 56
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=54.07 E-value=5.9 Score=25.25 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=13.9
Q ss_pred ChhhhHHHHHHHHHHHHH
Q 046429 4 SQEDRLDLACCYIKQLRE 21 (137)
Q Consensus 4 s~~d~l~eA~~YIk~Lq~ 21 (137)
+=.+-|..|+.||+.||-
T Consensus 46 dKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 46 DKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHHHhc
Confidence 334678899999999873
No 57
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=51.84 E-value=16 Score=20.10 Aligned_cols=19 Identities=11% Similarity=0.364 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 046429 16 IKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 16 Ik~Lq~kve~L~~kk~~L~ 34 (137)
.++|..|||+|-.++..|-
T Consensus 3 MnQLEdKvEeLl~~~~~L~ 21 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHIC 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHH
Confidence 4688999999988886653
No 58
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=51.08 E-value=9.9 Score=25.89 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=18.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHH
Q 046429 4 SQEDRLDLACCYIKQLRERIDK 25 (137)
Q Consensus 4 s~~d~l~eA~~YIk~Lq~kve~ 25 (137)
+.|-.+++|++|++..|.+-..
T Consensus 2 ~~~~~~~dA~~YvnkVK~rF~d 23 (105)
T 2f05_A 2 SDSVEFNNAISYVNKIKTRFLD 23 (105)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCcHHHHHHHHHHHHHHHcc
Confidence 4577899999999999998544
No 59
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=48.83 E-value=20 Score=21.53 Aligned_cols=22 Identities=14% Similarity=0.421 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 046429 14 CYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 14 ~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
.||.+|+.+++.|..+-.+|..
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~ 43 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQS 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999988777654
No 60
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=47.60 E-value=23 Score=21.11 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 046429 13 CCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 13 ~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
-.||..|+++|+.|+..=+.|..
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999876555443
No 61
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=47.13 E-value=25 Score=20.95 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 046429 14 CYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 14 ~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
.|+.+|+.+|+.|...-..|..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~ 43 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIE 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999987666554
No 62
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=46.54 E-value=21 Score=19.56 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 046429 16 IKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 16 Ik~Lq~kve~L~~kk~~L~ 34 (137)
.++|..|||+|-.++.+|-
T Consensus 3 M~QLEdKVEeLl~~n~~Le 21 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIE 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 3688899999988876553
No 63
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=44.12 E-value=19 Score=25.01 Aligned_cols=22 Identities=5% Similarity=0.197 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 046429 14 CYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 14 ~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
+=|++||++|+.+++|-++|+.
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKe 25 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKE 25 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999988888875
No 64
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=43.08 E-value=24 Score=23.66 Aligned_cols=21 Identities=33% Similarity=0.208 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046429 9 LDLACCYIKQLRERIDKLNRM 29 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~k 29 (137)
.+.|-.||+.|.++|+-|++.
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~ 85 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEED 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHH
Confidence 567889999999999998753
No 65
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=41.68 E-value=21 Score=21.56 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046429 13 CCYIKQLRERIDKLNRM 29 (137)
Q Consensus 13 ~~YIk~Lq~kve~L~~k 29 (137)
-.||..|+++|+.|+..
T Consensus 48 ~~~~~~Le~ri~~Le~~ 64 (72)
T 2er8_A 48 RARNEAIEKRFKELTRT 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47999999999999765
No 66
>2d0o_B DIOL dehydratase-reactivating factor small subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.51.3.2 PDB: 2d0p_B
Probab=40.64 E-value=26 Score=24.54 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=20.8
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEE
Q 046429 70 VVLISGMQRNFMLYEVISILEEEGAQVV 97 (137)
Q Consensus 70 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vv 97 (137)
|++.+..++.-.|.+|+--+||||+-..
T Consensus 10 I~i~~~~~~~~~l~evl~GIEEEGip~~ 37 (125)
T 2d0o_B 10 IAIAVIDGCDGLWREVLLGIEEEGIPFR 37 (125)
T ss_dssp EEEEEETTCGGGGHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCcHHHHHHHHhhhcccCCCeE
Confidence 4444444556789999999999997544
No 67
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=39.20 E-value=8 Score=21.49 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 046429 12 ACCYIKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 12 A~~YIk~Lq~kve~L~~kk~~L 33 (137)
+.+.|.-+|.||+.|+...|++
T Consensus 2 g~~~i~avKkKiq~lq~q~d~a 23 (37)
T 3azd_A 2 GSSSLEAVRRKIRSLQEQNYHL 23 (37)
T ss_dssp ----CHHHHHHHHHHHHHTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 3567788899999998877654
No 68
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=38.53 E-value=24 Score=18.47 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 046429 17 KQLRERIDKLNRM 29 (137)
Q Consensus 17 k~Lq~kve~L~~k 29 (137)
|+|+.|+++|-.|
T Consensus 16 kqlkakveellak 28 (31)
T 1p9i_A 16 KQLKAKVEELLAK 28 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555443
No 69
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.02 E-value=34 Score=22.50 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 046429 13 CCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 13 ~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
=.||.+|+.+|+.+...|.+|..
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~ 77 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEV 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999988877643
No 70
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=36.52 E-value=22 Score=22.58 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 046429 7 DRLDLACCYIKQLRERIDK 25 (137)
Q Consensus 7 d~l~eA~~YIk~Lq~kve~ 25 (137)
-.+++|++|++..+.+-..
T Consensus 2 l~~~dA~~yl~~VK~~F~~ 20 (77)
T 2czy_A 2 VHVEDALTYLDQVKIRFGS 20 (77)
T ss_dssp CSHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHcc
Confidence 3688999999999988754
No 71
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=36.50 E-value=33 Score=23.44 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 046429 14 CYIKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 14 ~YIk~Lq~kve~L~~kk~~L~ 34 (137)
+||.+|+.+|+.+...|.+|.
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~ 40 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVE 40 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999998887654
No 72
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=36.29 E-value=57 Score=20.62 Aligned_cols=29 Identities=14% Similarity=0.293 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 7 DRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 7 d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
+...-.-..+..|++++++|+..++.|..
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~ 67 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQR 67 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777788888888887777654
No 73
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=35.51 E-value=1.2e+02 Score=21.66 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCceEEEeEEEeeCCeEEEEEEEEeeccCcc-cchHHHHHHHhhhhC
Q 046429 82 LYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLG-VETSRACQRLHDLVD 137 (137)
Q Consensus 82 Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh~qv~~~~~~-~d~~~l~~rL~~~i~ 137 (137)
+.++++-+-+.|++++...+..-+.+.+-.|...-..+ +. =||+++++.|-.++|
T Consensus 14 v~~li~p~~~~g~eLvdve~~~~g~~~~LrV~ID~~~g-i~lddC~~vSr~is~~LD 69 (164)
T 1ib8_A 14 VREVVEPVIEAPFELVDIEYGKIGSDMILSIFVDKPEG-ITLNDTADLTEMISPVLD 69 (164)
T ss_dssp HHHHHHHHHCSSSEEEEEEEEEETTEEEEEEEEECSSC-CCHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHcCCcEEEEEEEEecCCCcEEEEEEECCCC-CCHHHHHHHHHHHHHHhc
Confidence 44444444434999999999988876655555443332 33 368899998887765
No 74
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.62 E-value=47 Score=19.68 Aligned_cols=21 Identities=5% Similarity=0.229 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 046429 15 YIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 15 YIk~Lq~kve~L~~kk~~L~~ 35 (137)
=..+||+|++.|.++=++|..
T Consensus 27 E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666677766666555543
No 75
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=33.26 E-value=29 Score=22.13 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 046429 16 IKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 16 Ik~Lq~kve~L~~kk~~L 33 (137)
|++|+++|++|+.+=-+.
T Consensus 5 i~eLkkevkKL~~~A~q~ 22 (71)
T 2js5_A 5 AEELKAKLKKLNAQATAL 22 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 688999999998764443
No 76
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=31.71 E-value=40 Score=20.52 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 046429 16 IKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 16 Ik~Lq~kve~L~~kk~~L 33 (137)
|.+|+++-++|++|=++|
T Consensus 27 ieelkkkweelkkkieel 44 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEEL 44 (67)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 556666666666554544
No 77
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.16 E-value=60 Score=19.64 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 046429 14 CYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 14 ~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
.++..|+.++++|+.+.++|..
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~ 44 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKE 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888777654
No 78
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=30.84 E-value=38 Score=20.70 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046429 13 CCYIKQLRERIDKLNRM 29 (137)
Q Consensus 13 ~~YIk~Lq~kve~L~~k 29 (137)
..||..|+++|+.|+..
T Consensus 57 ~~~~~~L~~ri~~LE~~ 73 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKT 73 (81)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47999999999999754
No 79
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=30.45 E-value=62 Score=24.13 Aligned_cols=32 Identities=9% Similarity=0.149 Sum_probs=26.0
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 4 SQEDRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 4 s~~d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
++.+.++-++.-|..|+.+++.|++.-|+|..
T Consensus 142 ~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 142 VIRELICYCLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888999999999999988887753
No 80
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=30.02 E-value=48 Score=27.26 Aligned_cols=28 Identities=7% Similarity=-0.009 Sum_probs=23.6
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 046429 2 MLSQEDRLDLACCYIKQLRERIDKLNRM 29 (137)
Q Consensus 2 ~~s~~d~l~eA~~YIk~Lq~kve~L~~k 29 (137)
+-++|..+-+++..++.||.++.+|+++
T Consensus 44 m~sLp~~v~~rI~aLk~lQ~E~~~le~e 71 (359)
T 3fs3_A 44 MTDLTEEQKETLKKLKLYQKEYYDYESK 71 (359)
T ss_dssp -CCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488999999999999999998887664
No 81
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=29.52 E-value=20 Score=24.60 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046429 8 RLDLACCYIKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 8 ~l~eA~~YIk~Lq~kve~L~~kk~~L~ 34 (137)
.+.+|..+..+|+++.++|+++.+++.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~ 30 (184)
T 3p01_A 4 VVQRAAETYDLLKQRTEELRRANAQMS 30 (184)
T ss_dssp --CTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999998776643
No 82
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=29.12 E-value=94 Score=18.67 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 5 QEDRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 5 ~~d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
-.|-+++....++.+.++++.+.+++.++..
T Consensus 35 ~~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~ 65 (115)
T 3zrx_A 35 RADEIGILAKSIERLRRSLKQLADDRTLLMA 65 (115)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999998887766544
No 83
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=29.04 E-value=95 Score=18.74 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 6 EDRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 6 ~d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
+|-+++-.+-++.+.++++++.+++.++..
T Consensus 36 ~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~ 65 (114)
T 3zcc_A 36 ADEIGILAKSIERLRRSLKQLADDGTLLMA 65 (114)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999988777654
No 84
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.36 E-value=1.1e+02 Score=19.97 Aligned_cols=32 Identities=3% Similarity=0.095 Sum_probs=26.1
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 4 SQEDRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 4 s~~d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
++|..+-+-++-...|+++++.+..++..+..
T Consensus 3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~ 34 (117)
T 2zqm_A 3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQL 34 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888889999999988888876644
No 85
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=28.36 E-value=84 Score=20.65 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=23.0
Q ss_pred Cc-ccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEE
Q 046429 78 RN-FMLYEVISILEEEGAQVVSASFSTIGDKIFHTV 112 (137)
Q Consensus 78 ~~-~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI 112 (137)
.+ ..++..|..||++|+-........-..+.+|.|
T Consensus 47 s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~L 82 (118)
T 2esh_A 47 GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRI 82 (118)
T ss_dssp CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEE
T ss_pred CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEE
Confidence 36 789999999999998433322221124777755
No 86
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=28.19 E-value=34 Score=21.59 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.8
Q ss_pred CcccHHHHHHHHHHcCceEEE
Q 046429 78 RNFMLYEVISILEEEGAQVVS 98 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvs 98 (137)
++..+-+++..|++.|++|++
T Consensus 59 ~gid~d~l~~~L~~~g~~~~~ 79 (81)
T 2fi0_A 59 AGTPMDKIVRTLEANGYEVIG 79 (81)
T ss_dssp HTCCHHHHHHHHHHTTCEEEC
T ss_pred cCCCHHHHHHHHHHcCCEeeC
Confidence 678899999999999999973
No 87
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=27.77 E-value=82 Score=20.04 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 046429 11 LACCYIKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 11 eA~~YIk~Lq~kve~L~~kk~~L~ 34 (137)
=|++=|.++-.||+.|+.+|+-+.
T Consensus 18 ma~sEI~EID~Ki~nL~~mR~ivl 41 (72)
T 2xu6_A 18 STMSEIRDIEVEVENLRQKKEKLL 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999997543
No 88
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=27.02 E-value=1.2e+02 Score=19.57 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=22.7
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeCC--eEEEEE
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIGD--KIFHTV 112 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~--r~fhtI 112 (137)
.+..++.+|..||++|+-..... ..++ +.+|.|
T Consensus 39 ~~~tly~~L~~Le~~GlI~~~~~--~~~~r~r~~y~L 73 (108)
T 3l7w_A 39 KESTLYPILKKLEKAGYLSTYTQ--EHQGRRRKYYHL 73 (108)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEE--EETTEEEEEEEE
T ss_pred CcChHHHHHHHHHHCCCeEEEee--cCCCCcceEEEE
Confidence 46789999999999998544322 2255 456654
No 89
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=26.98 E-value=16 Score=21.42 Aligned_cols=15 Identities=13% Similarity=0.465 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH
Q 046429 13 CCYIKQLRERIDKLN 27 (137)
Q Consensus 13 ~~YIk~Lq~kve~L~ 27 (137)
-.||..|+++|+.|+
T Consensus 51 ~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 469999999998774
No 90
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=26.71 E-value=49 Score=26.81 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 046429 14 CYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 14 ~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
+|+++|++++++|+++.+++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~ 268 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALK 268 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999988877753
No 91
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=26.66 E-value=49 Score=21.84 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=22.1
Q ss_pred EEEEEecCC--CcccHHHHHHHHHHcCceE
Q 046429 69 EVVLISGMQ--RNFMLYEVISILEEEGAQV 96 (137)
Q Consensus 69 eV~l~s~~~--~~~~Ls~vl~vLeEeGl~V 96 (137)
-|.++|+.+ ..++..++=+++++.|+++
T Consensus 5 kIll~Cg~G~sTS~l~~k~~~~~~~~gi~~ 34 (106)
T 1e2b_A 5 HIYLFSSAGMSTSLLVSKMRAQAEKYEVPV 34 (106)
T ss_dssp EEEEECSSSTTTHHHHHHHHHHHHHSCCSE
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHCCCCe
Confidence 467778765 5678888999999999874
No 92
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=26.36 E-value=1.2e+02 Score=21.35 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHHcCceEEEeEEEeeCCeEEE
Q 046429 79 NFMLYEVISILEEEGAQVVSASFSTIGDKIFH 110 (137)
Q Consensus 79 ~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fh 110 (137)
.+...++...|++.|+++|...+...+-.+|.
T Consensus 191 ~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~ 222 (234)
T 3dtn_A 191 DIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMF 222 (234)
T ss_dssp CCBHHHHHHHHHHTTCEEEEEEEEETTEEEEE
T ss_pred ccCHHHHHHHHHHcCCCceeeeeeecceeEEE
Confidence 35667888899999999999988776655554
No 93
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=26.32 E-value=58 Score=20.50 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046429 13 CCYIKQLRERIDKLNRMKEQ 32 (137)
Q Consensus 13 ~~YIk~Lq~kve~L~~kk~~ 32 (137)
-.||..|+++|+.|+..=.+
T Consensus 47 ~~~~~~Le~rl~~le~~l~~ 66 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKE 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999865333
No 94
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=26.14 E-value=90 Score=21.65 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 7 DRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 7 d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
+...-...++..|++++++|++.++.|..
T Consensus 95 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 123 (148)
T 3gpv_A 95 HRLKLMKQQEANVLQLIQDTEKNLKKIQQ 123 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777788888888877766544
No 95
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=26.03 E-value=85 Score=24.20 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046429 8 RLDLACCYIKQLRERIDKLNRMKEQAMKS 36 (137)
Q Consensus 8 ~l~eA~~YIk~Lq~kve~L~~kk~~L~~~ 36 (137)
.++..-+-|..++++++.|++-|+.|+..
T Consensus 387 ~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~ 415 (425)
T 1yf2_A 387 ILSSVDKSIELKKQKKEKLQRMKKKIMEL 415 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555567778888888888888887754
No 96
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=25.75 E-value=15 Score=23.62 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=18.4
Q ss_pred CChhhhHHHHHHHHHHHHHHHHH
Q 046429 3 LSQEDRLDLACCYIKQLRERIDK 25 (137)
Q Consensus 3 ~s~~d~l~eA~~YIk~Lq~kve~ 25 (137)
.|-+-.+++|++|++..+.+-..
T Consensus 4 ~~~~~~~~dA~~yl~~VK~rF~~ 26 (80)
T 2cr7_A 4 GSSGVHVEDALTYLDQVKIRFGS 26 (80)
T ss_dssp CCCCCCSCCSHHHHHHHHHHTSS
T ss_pred CCCCCCHHHHHHHHHHHHHHHcc
Confidence 45566788999999999988643
No 97
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.57 E-value=1.4e+02 Score=19.47 Aligned_cols=45 Identities=24% Similarity=0.436 Sum_probs=29.2
Q ss_pred CCeeEEEEEecCC--Cccc---HHHHHHHHHHcCceEEEeEEEeeCCeEEEEE
Q 046429 65 GSSIEVVLISGMQ--RNFM---LYEVISILEEEGAQVVSASFSTIGDKIFHTV 112 (137)
Q Consensus 65 ~~~~eV~l~s~~~--~~~~---Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI 112 (137)
++.+.|.+.++.+ .-|+ ..++++.|..-| +|+++.+ +.|+.|=|+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~--~~d~~fVtF 56 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRF--VEDKMWVTF 56 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEE--CSSSEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEE--ecCCEEEEE
Confidence 3444554533322 3455 788999999999 8888865 446666554
No 98
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=25.13 E-value=1e+02 Score=20.92 Aligned_cols=29 Identities=14% Similarity=0.230 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046429 8 RLDLACCYIKQLRERIDKLNRMKEQAMKS 36 (137)
Q Consensus 8 ~l~eA~~YIk~Lq~kve~L~~kk~~L~~~ 36 (137)
...-.-.++..|++++++|++.++.|...
T Consensus 80 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 108 (135)
T 1q06_A 80 VKRRTLEKVAEIERHIEELQSMRDQLLAL 108 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567788888888888888777653
No 99
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=25.10 E-value=1.3e+02 Score=19.82 Aligned_cols=32 Identities=6% Similarity=0.082 Sum_probs=24.7
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEEE
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVR 113 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtIh 113 (137)
.+.-+|+.|..|++.|+-... ..|.+++|++-
T Consensus 72 s~stvs~~L~~Le~~Glv~~~----~~gr~~~y~l~ 103 (122)
T 1r1t_A 72 SESAVSHQLRSLRNLRLVSYR----KQGRHVYYQLQ 103 (122)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE----EETTEEEEEES
T ss_pred CHHHHHHHHHHHHHCCCeEEE----EeCCEEEEEEC
Confidence 367899999999999986543 35777888764
No 100
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=24.97 E-value=91 Score=24.01 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046429 7 DRLDLACCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 7 d~l~eA~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
+-++..-+.|..++++++.|++.|+.|+.
T Consensus 176 ~~l~~ld~~i~~~~~~i~~l~~~k~~l~~ 204 (425)
T 1yf2_A 176 KILTKIDEGIEIIEKSINKLERIKKGLMH 204 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667788999999999999887765
No 101
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=24.67 E-value=1e+02 Score=21.31 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046429 9 LDLACCYIKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~kk~~L~ 34 (137)
..-....+..|++++++|++.++.|.
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~ 108 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLD 108 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777777777777666543
No 102
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=24.64 E-value=79 Score=16.22 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHH
Q 046429 8 RLDLACCYIKQLRE 21 (137)
Q Consensus 8 ~l~eA~~YIk~Lq~ 21 (137)
.+-||+.|+.....
T Consensus 7 ~LLeAAeyLErrEr 20 (26)
T 1pd7_B 7 MLLEAADYLERRER 20 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46799999975543
No 103
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=24.59 E-value=47 Score=19.75 Aligned_cols=21 Identities=10% Similarity=-0.034 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046429 9 LDLACCYIKQLRERIDKLNRM 29 (137)
Q Consensus 9 l~eA~~YIk~Lq~kve~L~~k 29 (137)
|++.+.-+..|.+.+++|+++
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~ 49 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAK 49 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666544
No 104
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=24.36 E-value=96 Score=19.27 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=18.7
Q ss_pred hhHHHHHHH----HHHHHHHHHHHHHH
Q 046429 7 DRLDLACCY----IKQLRERIDKLNRM 29 (137)
Q Consensus 7 d~l~eA~~Y----Ik~Lq~kve~L~~k 29 (137)
+.+.+|-+| +++|..||+++.+|
T Consensus 23 ~~l~~AN~YTD~KF~qL~nKi~k~~kr 49 (64)
T 3lt7_A 23 KAIRESNQYTDHKFHQLENRLDKLEKR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 567888888 68999999998755
No 105
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=24.11 E-value=54 Score=20.24 Aligned_cols=17 Identities=12% Similarity=0.495 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 046429 13 CCYIKQLRERIDKLNRM 29 (137)
Q Consensus 13 ~~YIk~Lq~kve~L~~k 29 (137)
-.||..|+++|+.|+..
T Consensus 44 ~~~~~~L~~r~~~le~~ 60 (89)
T 3coq_A 44 RAHLTEVESRLERLEQL 60 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36999999999999765
No 106
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=23.99 E-value=1.5e+02 Score=18.95 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHHcCceEEEeE
Q 046429 80 FMLYEVISILEEEGAQVVSAS 100 (137)
Q Consensus 80 ~~Ls~vl~vLeEeGl~Vvsa~ 100 (137)
.++.+.|+..+|.|+|+|.-+
T Consensus 29 ~~~~eAl~~A~e~~LDLVevs 49 (78)
T 1tif_A 29 KSKQEALEIAARRNLDLVLVA 49 (78)
T ss_dssp EEHHHHHHHHHHTTCEEEEEE
T ss_pred ccHHHHHHHHHHcCCCEEEEC
Confidence 578999999999999999765
No 107
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=23.74 E-value=80 Score=21.38 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=23.7
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEE
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTV 112 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI 112 (137)
.++.++.+|.-||++|+-...-..+.-..|.+|.|
T Consensus 51 s~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~L 85 (123)
T 3ri2_A 51 EANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRT 85 (123)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEE
T ss_pred CcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEE
Confidence 47899999999999998433222111135778875
No 108
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=23.18 E-value=1e+02 Score=24.05 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046429 7 DRLDLACCYIKQLRERIDKLNRMKEQAMKS 36 (137)
Q Consensus 7 d~l~eA~~YIk~Lq~kve~L~~kk~~L~~~ 36 (137)
+.++..-+.|..++++++.|++.|+.|+..
T Consensus 362 ~~l~~id~~i~~~~~~i~~L~~lk~~LL~~ 391 (406)
T 1ydx_A 362 KIVFLLDQKLDQYKKELSSLTVIRDTLLKK 391 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667888888888898888888763
No 109
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=23.14 E-value=1.3e+02 Score=19.69 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Q 046429 8 RLDLACCYIKQL----RERIDKLNRMKEQAMK 35 (137)
Q Consensus 8 ~l~eA~~YIk~L----q~kve~L~~kk~~L~~ 35 (137)
+=|||+.+|... +..|++|++|-.++|.
T Consensus 58 tkdeaiehier~rl~ykreie~l~~~ekeime 89 (99)
T 3aei_A 58 TKDEAIEHIERSRLVYKREIEKLKKREKEIME 89 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999875 5778888877666554
No 110
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=23.03 E-value=1e+02 Score=20.50 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=22.6
Q ss_pred cccHHHHHHHHHHcCceEEEeEEEe-eCCeEEEEE
Q 046429 79 NFMLYEVISILEEEGAQVVSASFST-IGDKIFHTV 112 (137)
Q Consensus 79 ~~~Ls~vl~vLeEeGl~Vvsa~~s~-~~~r~fhtI 112 (137)
+..++..|..||++|+-.....-+. -..|.+|.|
T Consensus 47 ~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~l 81 (117)
T 3elk_A 47 QGSIYILLKTMKERGFVISESSVNEKGQQLTVYHI 81 (117)
T ss_dssp TTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEE
T ss_pred cchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEE
Confidence 4789999999999998443322111 224777765
No 111
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=22.98 E-value=1.4e+02 Score=20.93 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHcCceEEEeEEEeeCC
Q 046429 80 FMLYEVISILEEEGAQVVSASFSTIGD 106 (137)
Q Consensus 80 ~~Ls~vl~vLeEeGl~Vvsa~~s~~~~ 106 (137)
+...++...|++.|++++.......+.
T Consensus 166 ~~~~~l~~~l~~~Gf~~~~~~~~~~~~ 192 (219)
T 1vlm_A 166 FSTEELMDLMRKAGFEEFKVVQTLFKH 192 (219)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEECCSC
T ss_pred CCHHHHHHHHHHCCCeEEEEecccCCC
Confidence 467899999999999999987765443
No 112
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=22.63 E-value=92 Score=22.52 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=23.6
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeC
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIG 105 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~ 105 (137)
....|.++.+.+.+.|..+.|.-.+.+.
T Consensus 73 S~~lL~~~~~~~~~~G~~i~NvD~tii~ 100 (152)
T 1iv3_A 73 SEVFLREAMRLVEARGAKLLQASLVLTL 100 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEEEe
Confidence 3568999999999999999999886543
No 113
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=22.42 E-value=66 Score=22.17 Aligned_cols=18 Identities=28% Similarity=0.218 Sum_probs=15.5
Q ss_pred CcccHHHHHHHHHHcCce
Q 046429 78 RNFMLYEVISILEEEGAQ 95 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~ 95 (137)
+.-.|.+|+--+||||+-
T Consensus 18 ~~~~l~~vl~GIEEEGip 35 (117)
T 1nbw_B 18 HAGAINELCWGLEEQGVP 35 (117)
T ss_dssp CHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHhhhhhcCCC
Confidence 556799999999999974
No 114
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=22.33 E-value=1e+02 Score=22.53 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=23.8
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeC
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIG 105 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~ 105 (137)
....|.++.+.+.+.|..+.|.-.+.+.
T Consensus 79 S~~lL~~~~~~v~~~G~~i~NvD~tii~ 106 (162)
T 3re3_A 79 SKFFLAEIKKMLDKKQYSISNIDCTIIA 106 (162)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEEEc
Confidence 4568999999999999999999886543
No 115
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=22.13 E-value=1e+02 Score=22.44 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=23.6
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeC
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIG 105 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~ 105 (137)
....|.++.+.+.+.|..+.|.-.+.+.
T Consensus 74 S~~lL~~~~~~v~~~G~~i~NvD~tii~ 101 (160)
T 1gx1_A 74 SRELLREAWRRIQAKGYTLGNVDVTIIA 101 (160)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEEEc
Confidence 3468999999999999999999886543
No 116
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=22.09 E-value=1.3e+02 Score=19.49 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046429 8 RLDLACCYIKQLRERIDKLNRMKEQAM 34 (137)
Q Consensus 8 ~l~eA~~YIk~Lq~kve~L~~kk~~L~ 34 (137)
.....-+.+..|++++++|++.++.|.
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~l~ 102 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQTID 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666555543
No 117
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=21.69 E-value=99 Score=22.52 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=23.7
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeC
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIG 105 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~ 105 (137)
....|.++.+.+.+.|..+.|...+.+.
T Consensus 75 S~~lL~~~~~~v~~~G~~i~NvD~tii~ 102 (159)
T 1t0a_A 75 SRVLLRHCYALAKAKGFELGNLDVTIIA 102 (159)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEEEc
Confidence 3468999999999999999999886543
No 118
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.51 E-value=92 Score=19.80 Aligned_cols=19 Identities=5% Similarity=0.172 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 046429 8 RLDLACCYIKQLRERIDKL 26 (137)
Q Consensus 8 ~l~eA~~YIk~Lq~kve~L 26 (137)
.++.||.++..|+.+++.+
T Consensus 41 ~i~~aV~~Ll~LKa~l~~~ 59 (79)
T 2djv_A 41 EVAAEVAKLLDLKKQLAVA 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHh
Confidence 3445555555555555444
No 119
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=21.42 E-value=92 Score=18.42 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 046429 13 CCYIKQLRERIDKLNRMKEQAMK 35 (137)
Q Consensus 13 ~~YIk~Lq~kve~L~~kk~~L~~ 35 (137)
+.-|-.|...|+.|+++|+.-+.
T Consensus 5 ~EEILRLErEIE~Lqrqke~~~~ 27 (51)
T 2lw9_A 5 VEEILRLEKEIEDLQRMKEQQEL 27 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999876443
No 120
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=21.25 E-value=1.4e+02 Score=22.01 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=25.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046429 4 SQEDRLDLACCYIKQLRERIDKLNRMKEQA 33 (137)
Q Consensus 4 s~~d~l~eA~~YIk~Lq~kve~L~~kk~~L 33 (137)
|.+|-|...=+||+=|.++...+.++-++.
T Consensus 68 tt~~~i~~m~~yI~llrErea~lEqkVaeq 97 (169)
T 3k29_A 68 TTSDAILKMKAYIKVVAIQLSEEEEKVNKQ 97 (169)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999988876553
No 121
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=21.20 E-value=1.2e+02 Score=20.95 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=22.7
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeC-CeEEEEE
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIG-DKIFHTV 112 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~r~fhtI 112 (137)
.+..++.+|.-||++|+-........-+ .|.+|.|
T Consensus 75 s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~L 110 (145)
T 1xma_A 75 KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRI 110 (145)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEE
T ss_pred ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEE
Confidence 4678999999999999844333222122 4777754
No 122
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=20.87 E-value=1.7e+02 Score=18.47 Aligned_cols=31 Identities=6% Similarity=0.088 Sum_probs=23.4
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeCCeEEEEE
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTV 112 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI 112 (137)
.+..+++.|..|++.|+-... ..|.+++|.+
T Consensus 52 s~stvs~~L~~L~~~Glv~~~----~~gr~~~y~l 82 (106)
T 1r1u_A 52 SQSNVSHQLKLLKSVHLVKAK----RQGQSMIYSL 82 (106)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE----EETTEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCeEEE----EeCCEEEEEE
Confidence 367899999999999986543 2466777765
No 123
>2uzh_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; ISPF, lyase, mycobacteria, complex with CDP; HET: CDP IPE; 2.2A {Mycobacterium smegmatis}
Probab=20.51 E-value=1.1e+02 Score=22.52 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.5
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeC
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIG 105 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~ 105 (137)
....|.++.+.+.+.|..+.|.-.+.+.
T Consensus 78 S~~lL~~~~~~v~~~G~~i~NvD~tii~ 105 (165)
T 2uzh_A 78 GADMIRHVRGLVENAGFVIGNATVQVIG 105 (165)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEEEc
Confidence 3467999999999999999999886543
No 124
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=20.18 E-value=1.5e+02 Score=19.66 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=22.8
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEe-eCCeEEEEE
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFST-IGDKIFHTV 112 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~-~~~r~fhtI 112 (137)
.+..++.+|.-||++|+-.....-+. -..|.+|.|
T Consensus 43 s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~L 78 (117)
T 4esf_A 43 VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSL 78 (117)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEE
T ss_pred CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEE
Confidence 46789999999999998433322122 235888866
No 125
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=20.13 E-value=1.1e+02 Score=22.83 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=23.7
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEeeC
Q 046429 78 RNFMLYEVISILEEEGAQVVSASFSTIG 105 (137)
Q Consensus 78 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~ 105 (137)
....|.++.+.+.+.|..+.|.-.+.+.
T Consensus 96 S~~lL~~~~~lv~~~G~~I~NvD~tIia 123 (183)
T 3f0d_A 96 SRALLRECASRVAQAGFAIRNVDSTIIA 123 (183)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEEEc
Confidence 3568999999999999999999886544
No 126
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=20.02 E-value=97 Score=18.53 Aligned_cols=21 Identities=24% Similarity=-0.086 Sum_probs=17.6
Q ss_pred cccHHHHHHHHHHcCceEEEe
Q 046429 79 NFMLYEVISILEEEGAQVVSA 99 (137)
Q Consensus 79 ~~~Ls~vl~vLeEeGl~Vvsa 99 (137)
+....+++..|+..|..++.-
T Consensus 4 p~~~~elik~L~~~G~~~~r~ 24 (70)
T 1whz_A 4 PPRPEEVARKLRRLGFVERMA 24 (70)
T ss_dssp CCCHHHHHHHHHHTTCEEEEE
T ss_pred CCCHHHHHHHHHHCCCEEeCC
Confidence 456789999999999998753
Done!