Query 046435
Match_columns 630
No_of_seqs 314 out of 1383
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 12:03:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1311 DHHC-type Zn-finger pr 100.0 3E-37 6.5E-42 322.2 19.2 172 172-363 107-278 (299)
2 KOG1315 Predicted DHHC-type Zn 100.0 8.3E-35 1.8E-39 303.3 15.1 211 19-314 18-232 (307)
3 PF01529 zf-DHHC: DHHC palmito 100.0 3.4E-33 7.3E-38 267.9 12.9 130 174-314 44-173 (174)
4 KOG1314 DHHC-type Zn-finger pr 100.0 1.1E-30 2.4E-35 270.3 12.7 140 178-318 91-230 (414)
5 COG5273 Uncharacterized protei 100.0 7.7E-30 1.7E-34 268.1 15.0 131 176-319 107-237 (309)
6 KOG1313 DHHC-type Zn-finger pr 100.0 3.2E-29 7E-34 252.8 10.4 147 175-321 99-252 (309)
7 KOG1312 DHHC-type Zn-finger pr 99.9 1.7E-25 3.7E-30 226.9 13.3 135 178-314 148-290 (341)
8 KOG0509 Ankyrin repeat and DHH 99.9 2.2E-23 4.8E-28 230.3 8.7 66 179-244 421-486 (600)
9 COG5273 Uncharacterized protei 93.7 0.26 5.6E-06 52.9 8.7 127 176-318 121-248 (309)
10 KOG1311 DHHC-type Zn-finger pr 92.2 0.67 1.4E-05 49.0 9.1 32 191-222 112-143 (299)
11 PF01529 zf-DHHC: DHHC palmito 88.5 2.5 5.4E-05 40.5 8.7 58 177-245 61-118 (174)
12 KOG1314 DHHC-type Zn-finger pr 77.3 6.8 0.00015 42.8 7.1 122 178-315 105-230 (414)
13 KOG1313 DHHC-type Zn-finger pr 76.3 17 0.00037 38.6 9.5 50 178-238 116-165 (309)
14 PF13240 zinc_ribbon_2: zinc-r 72.2 1.9 4.2E-05 28.8 1.0 21 180-200 1-21 (23)
15 KOG0509 Ankyrin repeat and DHH 69.3 1.8 3.8E-05 50.1 0.5 52 178-230 325-376 (600)
16 PF12773 DZR: Double zinc ribb 62.3 6.3 0.00014 30.4 2.3 36 176-211 10-48 (50)
17 KOG1315 Predicted DHHC-type Zn 58.9 41 0.00088 36.4 8.3 32 191-222 108-139 (307)
18 PF07010 Endomucin: Endomucin; 57.9 12 0.00025 38.7 3.8 27 45-71 196-222 (259)
19 PF13248 zf-ribbon_3: zinc-rib 56.4 5.7 0.00012 27.1 0.9 22 179-200 3-24 (26)
20 PRK04136 rpl40e 50S ribosomal 49.0 9.6 0.00021 30.2 1.3 24 177-200 13-36 (48)
21 PRK15103 paraquat-inducible me 45.2 1.6E+02 0.0035 33.2 10.6 33 176-208 219-251 (419)
22 PTZ00303 phosphatidylinositol 42.3 13 0.00028 44.5 1.4 22 179-200 461-489 (1374)
23 KOG2927 Membrane component of 40.3 19 0.00041 39.5 2.3 24 51-74 234-257 (372)
24 PF10571 UPF0547: Uncharacteri 38.7 17 0.00037 25.1 1.1 22 179-200 1-22 (26)
25 PHA02680 ORF090 IMV phosphoryl 38.3 1.2E+02 0.0027 27.0 6.5 38 272-312 44-81 (91)
26 PF06906 DUF1272: Protein of u 38.2 12 0.00026 30.6 0.3 36 180-218 7-50 (57)
27 TIGR00155 pqiA_fam integral me 36.2 2.3E+02 0.0051 31.7 10.1 34 175-208 212-246 (403)
28 KOG1842 FYVE finger-containing 35.5 11 0.00023 42.4 -0.5 27 176-202 178-206 (505)
29 KOG1398 Uncharacterized conser 34.0 31 0.00066 38.4 2.6 23 190-218 12-34 (460)
30 PRK05978 hypothetical protein; 31.8 2.1E+02 0.0045 27.9 7.7 27 179-208 34-65 (148)
31 KOG3488 Dolichol phosphate-man 31.7 1E+02 0.0022 26.5 4.8 19 44-62 54-72 (81)
32 KOG4399 C2HC-type Zn-finger pr 31.7 13 0.00028 39.2 -0.6 31 174-204 200-230 (325)
33 PF01363 FYVE: FYVE zinc finge 31.1 19 0.00042 29.5 0.5 25 178-202 9-35 (69)
34 PF12773 DZR: Double zinc ribb 29.6 35 0.00077 26.2 1.7 24 176-199 27-50 (50)
35 PF05478 Prominin: Prominin; 27.9 2.2E+02 0.0047 34.8 8.7 18 220-237 411-428 (806)
36 PF09889 DUF2116: Uncharacteri 27.0 60 0.0013 26.9 2.6 22 179-200 4-26 (59)
37 COG4640 Predicted membrane pro 26.8 36 0.00079 37.9 1.7 42 178-219 1-43 (465)
38 PF01020 Ribosomal_L40e: Ribos 26.3 45 0.00098 26.9 1.7 25 177-201 16-42 (52)
39 TIGR00155 pqiA_fam integral me 25.3 3.4E+02 0.0074 30.4 9.1 33 176-208 11-49 (403)
40 PRK13743 conjugal transfer pro 24.3 3E+02 0.0066 26.4 7.0 19 222-240 39-57 (141)
41 PF12666 PrgI: PrgI family pro 23.7 87 0.0019 27.3 3.3 29 10-38 17-45 (93)
42 PF07062 Clc-like: Clc-like; 23.0 3.5E+02 0.0075 27.9 7.8 9 199-207 65-73 (211)
43 smart00064 FYVE Protein presen 22.6 59 0.0013 26.5 1.9 25 178-202 10-36 (68)
44 KOG3183 Predicted Zn-finger pr 22.2 38 0.00083 35.3 0.8 13 201-213 37-49 (250)
45 PF08600 Rsm1: Rsm1-like; Int 22.1 44 0.00094 29.6 1.0 41 178-218 19-67 (91)
46 PF06143 Baculo_11_kDa: Baculo 20.7 2.4E+02 0.0052 25.0 5.3 19 294-312 51-69 (84)
No 1
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=3e-37 Score=322.23 Aligned_cols=172 Identities=28% Similarity=0.423 Sum_probs=123.1
Q ss_pred hccccCceecccccccccCCCccccCCCcccCCCCcccccccceeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046435 172 QMSEDGMFYCSLCEVEVFKYSKHCRVCDKCVDHFDHHCRWLNNCIGKKNYRQFFTLMVSALLLLILQWVTGIFVLISCFL 251 (630)
Q Consensus 172 ~~~~~~~~fC~~C~~~kP~RSkHCs~CnrCV~rfDHHCpWlnNCIG~rNyr~F~lFL~~~~l~~i~~~~~~i~~li~~~~ 251 (630)
+..+.+++||.+|+.++|+|||||++||+||+||||||||+|||||++|||+|+.|+++..+++++.++...+.+.....
T Consensus 107 ~~~~~~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~~~~~~~~~ 186 (299)
T KOG1311|consen 107 NGIQVEWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLFYELLQRAD 186 (299)
T ss_pred CCcccceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34456689999999999999999999999999999999999999999999999999999999888887777766554332
Q ss_pred hccccchhcccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhhcCCCCCCC
Q 046435 252 ERKRYSVDISSKLGSSFSLVPFVIVVAVCTILAMLATLPLAQLFFFHILLIKKGLTTYDYIIALREQEQEQQGVGGQQSP 331 (630)
Q Consensus 252 ~~~~~~~~~~~~lgs~~~~~~~~ivv~i~~iL~~l~~l~l~~L~~fHi~LI~~NiTT~E~i~~~R~~~~~~~~~~~~~~P 331 (630)
...... . .........+.++++++++++++++++|++||+++|.+|+||+|+++..+... ........
T Consensus 187 ~~~~~~-------~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~~~~~~~~~----~~~~~~~g 254 (299)
T KOG1311|consen 187 NLKVNL-------T-PVLIPAGTFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTYESIKSLDFVS----RSNPYDLG 254 (299)
T ss_pred cccccc-------c-ccccchhHHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhhhhcccccc----ccCCCchh
Confidence 221110 0 11112233444455577888888899999999999999999999987611111 10111111
Q ss_pred ccccccccccCCCCCCCCCCCccceeCCCccc
Q 046435 332 QMSIASSLTGLSSASSFSTFHRGAWCTPPRLF 363 (630)
Q Consensus 332 ~~s~~ss~tg~s~~ssfnp~~rG~Wc~Ppr~f 363 (630)
..++++ ..++....+.|++|...+
T Consensus 255 ~~~n~~--------~~~~~~~~~~~~~p~~~~ 278 (299)
T KOG1311|consen 255 LLKNLQ--------EVFGGPLPLSWLSPFARS 278 (299)
T ss_pred HHHHHH--------HHhCCCCCcccccccccC
Confidence 122222 346777778899988764
No 2
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=8.3e-35 Score=303.31 Aligned_cols=211 Identities=24% Similarity=0.460 Sum_probs=145.0
Q ss_pred HHHHHHHhheeeeeccccchhHHH----HHHHHHHHHHHHHHHHHhhhhheecCCCCccccccccccCCCCCCCCCCCCC
Q 046435 19 AVFMALGFAFYVFFAPFVGKRILQ----LIIMGIYSPLIGCVFGLYIWCAAADPADSGVFKSKKYLKIPDSGKSSRPKDS 94 (630)
Q Consensus 19 ~Vf~lL~~afYvf~aPfLg~~~~~----~i~i~Iys~L~l~V~~lYirc~~iDPgDPgi~~~~~~~k~~~~~~~~~~s~~ 94 (630)
.+.+.+++.+|++++-+....+.. .+...+|.+++++.+..|++++.+|||-+.....-.. .+ .
T Consensus 18 ~i~~~~~~~yy~~v~~~c~~~i~~~~~~~~~ll~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~~---~~---------~ 85 (307)
T KOG1315|consen 18 IILLVIGWTYYVYVAVLCILSISLTIPSVLLLLLFHLLLIMFLWSYFRTVFTDPGRVPDSYRPSV---ED---------E 85 (307)
T ss_pred eeeeeEEEEEEEeehhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHheeEecCCCCccccCCCc---Cc---------c
Confidence 333457888999988887664433 4556778889999999999999999998632211000 00 0
Q ss_pred CCCCCCCCCccccccccCCCCccccccccccccccccchhhhhhccCCCCCccccccccccceeeccCCCCCcchhhhcc
Q 046435 95 KLGGDSTSSINDANAATVGHKPVEMDTMDAETTSKDLNSEVQEKNALSPNSSCCTLVLSPCAFICNCFGSSEESSEQQMS 174 (630)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~c~~~~~~~~~~~~~ 174 (630)
+ .+. .+.. .+ .+.. ......
T Consensus 86 ~----~~~-----------------------~~~~---~~-~~~~-----------------------------~~~~~~ 105 (307)
T KOG1315|consen 86 D----SLE-----------------------NGSD---NE-RDLP-----------------------------GYTRTS 105 (307)
T ss_pred c----ccc-----------------------ccCc---cc-ccce-----------------------------eeEecC
Confidence 0 000 0000 00 0000 000111
Q ss_pred ccCceecccccccccCCCccccCCCcccCCCCcccccccceeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046435 175 EDGMFYCSLCEVEVFKYSKHCRVCDKCVDHFDHHCRWLNNCIGKKNYRQFFTLMVSALLLLILQWVTGIFVLISCFLERK 254 (630)
Q Consensus 175 ~~~~~fC~~C~~~kP~RSkHCs~CnrCV~rfDHHCpWlnNCIG~rNyr~F~lFL~~~~l~~i~~~~~~i~~li~~~~~~~ 254 (630)
.+..+||.+|+.+||+|||||++|+|||+||||||||+|||||.+|||+|++|++|..+.+++.++.....++..+ ...
T Consensus 106 ~g~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~~~~~~~~~~-~~~ 184 (307)
T KOG1315|consen 106 DGAVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVTTLIGFTKYF-QGG 184 (307)
T ss_pred CCCceeecccccccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 2457899999999999999999999999999999999999999999999999999999999887777666555554 211
Q ss_pred ccchhcccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Q 046435 255 RYSVDISSKLGSSFSLVPFVIVVAVCTILAMLATLPLAQLFFFHILLIKKGLTTYDYIIA 314 (630)
Q Consensus 255 ~~~~~~~~~lgs~~~~~~~~ivv~i~~iL~~l~~l~l~~L~~fHi~LI~~NiTT~E~i~~ 314 (630)
.. +. ......+++++++++.+++.+.+|+++|++||++|+||+|....
T Consensus 185 ~~--------~~----~~~~~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~ 232 (307)
T KOG1315|consen 185 AG--------PS----SLLLFFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKS 232 (307)
T ss_pred cc--------Cc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhcc
Confidence 00 00 11122333445566667777888999999999999999998754
No 3
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=100.00 E-value=3.4e-33 Score=267.94 Aligned_cols=130 Identities=30% Similarity=0.616 Sum_probs=102.3
Q ss_pred cccCceecccccccccCCCccccCCCcccCCCCcccccccceeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046435 174 SEDGMFYCSLCEVEVFKYSKHCRVCDKCVDHFDHHCRWLNNCIGKKNYRQFFTLMVSALLLLILQWVTGIFVLISCFLER 253 (630)
Q Consensus 174 ~~~~~~fC~~C~~~kP~RSkHCs~CnrCV~rfDHHCpWlnNCIG~rNyr~F~lFL~~~~l~~i~~~~~~i~~li~~~~~~ 253 (630)
..++.+||.+|+..||+|||||+.||+||.+|||||+|+|||||++|||+|++|+++..+++++.+...++.+.......
T Consensus 44 ~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (174)
T PF01529_consen 44 ENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPSI 123 (174)
T ss_pred cCCCCEECcccCCcCCCcceeccccccccccccccchhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34567899999999999999999999999999999999999999999999999999999998887777666555443222
Q ss_pred cccchhcccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Q 046435 254 KRYSVDISSKLGSSFSLVPFVIVVAVCTILAMLATLPLAQLFFFHILLIKKGLTTYDYIIA 314 (630)
Q Consensus 254 ~~~~~~~~~~lgs~~~~~~~~ivv~i~~iL~~l~~l~l~~L~~fHi~LI~~NiTT~E~i~~ 314 (630)
.... +.. ......+++++++++++++++.|+++|+++|.+|+||+|++++
T Consensus 124 ~~~~----------~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~ 173 (174)
T PF01529_consen 124 SFSS----------FWI-FSNFSSIFLLIISIFFFIFVGFLLIFQLYLILRNITTYERIKR 173 (174)
T ss_pred cccc----------ccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHc
Confidence 1110 000 0000013445566777888999999999999999999999864
No 4
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=270.34 Aligned_cols=140 Identities=25% Similarity=0.433 Sum_probs=97.1
Q ss_pred ceecccccccccCCCccccCCCcccCCCCcccccccceeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 046435 178 MFYCSLCEVEVFKYSKHCRVCDKCVDHFDHHCRWLNNCIGKKNYRQFFTLMVSALLLLILQWVTGIFVLISCFLERKRYS 257 (630)
Q Consensus 178 ~~fC~~C~~~kP~RSkHCs~CnrCV~rfDHHCpWlnNCIG~rNyr~F~lFL~~~~l~~i~~~~~~i~~li~~~~~~~~~~ 257 (630)
.+||..|+.+|+||||||+.|||||.+|||||||+|||||..||.+|+.||++..++|+-...+....++..+.......
T Consensus 91 lqfCk~CqgYKapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~~~ 170 (414)
T KOG1314|consen 91 LQFCKKCQGYKAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWYIK 170 (414)
T ss_pred HHHHhhccCcCCCccccchHHHHHHHhhccCCcchhhcccccccHHHHHHHHHHHHhcccceeeehhHHHHHHHHHHHhh
Confidence 46999999999999999999999999999999999999999999999999999988765332221111111111100000
Q ss_pred hhcccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046435 258 VDISSKLGSSFSLVPFVIVVAVCTILAMLATLPLAQLFFFHILLIKKGLTTYDYIIALREQ 318 (630)
Q Consensus 258 ~~~~~~lgs~~~~~~~~ivv~i~~iL~~l~~l~l~~L~~fHi~LI~~NiTT~E~i~~~R~~ 318 (630)
-.. ..+..-+......+.+++.+.+++...+.++.||+.|+..|.+|+|.+|-+.-.++.
T Consensus 171 ~g~-~hlp~v~ft~~~li~~vfslgla~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka~ 230 (414)
T KOG1314|consen 171 YGL-RHLPIVFFTLSSLIALVFSLGLAIGVVLALTMLFFIQLKQILNNRTGIESWIVEKAM 230 (414)
T ss_pred ccc-ccCceeeccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 000 111111112222333444556677778889999999999999999999988744443
No 5
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=99.96 E-value=7.7e-30 Score=268.11 Aligned_cols=131 Identities=29% Similarity=0.664 Sum_probs=100.2
Q ss_pred cCceecccccccccCCCccccCCCcccCCCCcccccccceeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 046435 176 DGMFYCSLCEVEVFKYSKHCRVCDKCVDHFDHHCRWLNNCIGKKNYRQFFTLMVSALLLLILQWVTGIFVLISCFLERKR 255 (630)
Q Consensus 176 ~~~~fC~~C~~~kP~RSkHCs~CnrCV~rfDHHCpWlnNCIG~rNyr~F~lFL~~~~l~~i~~~~~~i~~li~~~~~~~~ 255 (630)
+..+||.+|+.+||+|||||+.||+||.+|||||+|+|||||.+|||+|++|+++.....++.++.+.+.+...+..+..
T Consensus 107 ~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (309)
T COG5273 107 GTENFCSTCNIYKPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHD 186 (309)
T ss_pred ccceeccccccccCCCCccchhhcchhhccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 34579999999999999999999999999999999999999999999999999999888777776666554433321111
Q ss_pred cchhcccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 046435 256 YSVDISSKLGSSFSLVPFVIVVAVCTILAMLATLPLAQLFFFHILLIKKGLTTYDYIIALREQE 319 (630)
Q Consensus 256 ~~~~~~~~lgs~~~~~~~~ivv~i~~iL~~l~~l~l~~L~~fHi~LI~~NiTT~E~i~~~R~~~ 319 (630)
. ......+++.+..+...+++.+..++.+|.+++..|+||+|.+...|..+
T Consensus 187 ~-------------~~~~~~li~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~ 237 (309)
T COG5273 187 T-------------SLAICFLIFGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGS 237 (309)
T ss_pred h-------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccee
Confidence 0 01111122223455555677788899999999999999999987666543
No 6
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.96 E-value=3.2e-29 Score=252.80 Aligned_cols=147 Identities=25% Similarity=0.497 Sum_probs=107.6
Q ss_pred ccCceecccccccccCCCccccCCCcccCCCCcccccccceeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 046435 175 EDGMFYCSLCEVEVFKYSKHCRVCDKCVDHFDHHCRWLNNCIGKKNYRQFFTLMVSALLLLILQWVTGIFVLISCFLERK 254 (630)
Q Consensus 175 ~~~~~fC~~C~~~kP~RSkHCs~CnrCV~rfDHHCpWlnNCIG~rNyr~F~lFL~~~~l~~i~~~~~~i~~li~~~~~~~ 254 (630)
.+...||.+|..+||+|+|||++|||||++|||||||+|||||..|||+||+|++|+++++.+..+.+.+.++...-...
T Consensus 99 ~~~~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~le~~~ 178 (309)
T KOG1313|consen 99 LENDSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDHLEPIE 178 (309)
T ss_pred CccccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHh
Confidence 34567999999999999999999999999999999999999999999999999999999999977777665554332111
Q ss_pred c---cchhccccc-CCCccchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 046435 255 R---YSVDISSKL-GSSFSLVPF---VIVVAVCTILAMLATLPLAQLFFFHILLIKKGLTTYDYIIALREQEQE 321 (630)
Q Consensus 255 ~---~~~~~~~~l-gs~~~~~~~---~ivv~i~~iL~~l~~l~l~~L~~fHi~LI~~NiTT~E~i~~~R~~~~~ 321 (630)
+ +..+..... ...+..... ..-+.-+.+++..+++.++.|..+|.++|.+|.|.+|+++.++++++.
T Consensus 179 ~~tay~~d~~h~~Pp~~i~r~~~~i~~t~~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~ 252 (309)
T KOG1313|consen 179 EITAYASDVAHVAPPPSILRVYKNITRTSIANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRY 252 (309)
T ss_pred hcccccCcccccCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhH
Confidence 1 111100000 000000000 011222445666677889999999999999999999999988887664
No 7
>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.93 E-value=1.7e-25 Score=226.94 Aligned_cols=135 Identities=28% Similarity=0.560 Sum_probs=87.6
Q ss_pred ceecccccccccCCCccccCCCcccCCCCcccccccceeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 046435 178 MFYCSLCEVEVFKYSKHCRVCDKCVDHFDHHCRWLNNCIGKKNYRQFFTLMVSALLLLILQWVTGIFVLISCFLERKRYS 257 (630)
Q Consensus 178 ~~fC~~C~~~kP~RSkHCs~CnrCV~rfDHHCpWlnNCIG~rNyr~F~lFL~~~~l~~i~~~~~~i~~li~~~~~~~~~~ 257 (630)
...|++|+.+||.|||||++||+||.||||||.|+|||||++|+|+|++|+++...++.+.++...+...-... +...
T Consensus 148 ~~kCSTCki~KPARSKHCsiCNrCV~rfDHHCiWiNNCIG~~N~ryF~lFLL~~i~l~~yaivrlgfi~ln~~s--dl~q 225 (341)
T KOG1312|consen 148 NVKCSTCKIRKPARSKHCSICNRCVHRFDHHCIWINNCIGAWNIRYFLLFLLTLISLATYAIVRLGFIVLNVMS--DLYQ 225 (341)
T ss_pred CCccccccCCCccccccchHHHHHHHHhccceEeeecccccchHHHHHHHHHHHHHHHHHHHHHHHheehhhcc--ccch
Confidence 45899999999999999999999999999999999999999999999999999977776655544333111111 1111
Q ss_pred hhcccccCCC--cc---chhHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHhcCCchHHHHHH
Q 046435 258 VDISSKLGSS--FS---LVPFVIVVAV--CTILAML-ATLPLAQLFFFHILLIKKGLTTYDYIIA 314 (630)
Q Consensus 258 ~~~~~~lgs~--~~---~~~~~ivv~i--~~iL~~l-~~l~l~~L~~fHi~LI~~NiTT~E~i~~ 314 (630)
.......+.+ .+ ..+..++.+. .++++.. ..-++++...|-+|+-.+|+||.|+...
T Consensus 226 ~v~ilt~~~g~~ks~~~L~~yl~la~~~~v~~l~~~~~~~~~~~Y~~f~~y~~~t~~~~~~W~~~ 290 (341)
T KOG1312|consen 226 EVYILTLGHGHVKSTVFLIQYLFLAFPRIVFMLGFVVVLSFLGGYLLFVLYLAATNQTTNEWYRG 290 (341)
T ss_pred heeeeeeeecchhhHHHHHHHHHHHhccceeeeehhhhhhHhHHHHHHHHHHHhccCCchhhhcc
Confidence 1001111111 00 0111111110 0111111 2234677888899999999999999865
No 8
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.88 E-value=2.2e-23 Score=230.28 Aligned_cols=66 Identities=36% Similarity=0.900 Sum_probs=59.9
Q ss_pred eecccccccccCCCccccCCCcccCCCCcccccccceeccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 046435 179 FYCSLCEVEVFKYSKHCRVCDKCVDHFDHHCRWLNNCIGKKNYRQFFTLMVSALLLLILQWVTGIF 244 (630)
Q Consensus 179 ~fC~~C~~~kP~RSkHCs~CnrCV~rfDHHCpWlnNCIG~rNyr~F~lFL~~~~l~~i~~~~~~i~ 244 (630)
+||.+|.++||.|+|||++|||||.+|||||||++||||.+||++|+.|++.....+.+.+..+.+
T Consensus 421 ~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~ncVG~kNh~~F~~Fl~~l~~~~~~~l~~~~~ 486 (600)
T KOG0509|consen 421 RFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGNCVGLKNHRLFVFFLLTLLTVIVFYLYLCLY 486 (600)
T ss_pred cceeeeeeecCCccchhhhhHHHHhccccCCCccccccCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999887777665555443
No 9
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=93.74 E-value=0.26 Score=52.91 Aligned_cols=127 Identities=24% Similarity=0.349 Sum_probs=75.0
Q ss_pred cCceecccccccccCCCccccCCCcccCCCCcccccccceeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 046435 176 DGMFYCSLCEVEVFKYSKHCRVCDKCVDHFDHHCRWLNNCIGKKNYRQFFTLMVSALLLLILQWVTGIFVLISCFLERKR 255 (630)
Q Consensus 176 ~~~~fC~~C~~~kP~RSkHCs~CnrCV~rfDHHCpWlnNCIG~rNyr~F~lFL~~~~l~~i~~~~~~i~~li~~~~~~~~ 255 (630)
+...+|..|+.=+...-|||..-|+||-+-.| |=+-.|++++....+..++....-+......-.+...
T Consensus 121 ~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~-----------r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (309)
T COG5273 121 PRSHHCSICNRCVLKFDHHCPWINNCVGFRNY-----------RFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSL 189 (309)
T ss_pred CCCccchhhcchhhccCccCcccccccCcchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 45679999999999999999999999987655 4556788877555544444443333222211000000
Q ss_pred c-chhcccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 046435 256 Y-SVDISSKLGSSFSLVPFVIVVAVCTILAMLATLPLAQLFFFHILLIKKGLTTYDYIIALREQ 318 (630)
Q Consensus 256 ~-~~~~~~~lgs~~~~~~~~ivv~i~~iL~~l~~l~l~~L~~fHi~LI~~NiTT~E~i~~~R~~ 318 (630)
+ ...+. + ........++.+..++......++..+...+++.+.++.++-|.....|+.
T Consensus 190 ~~~~li~---~--~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~ 248 (309)
T COG5273 190 AICFLIF---G--CSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLCRES 248 (309)
T ss_pred HHHHHHH---h--hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccchhccC
Confidence 0 00000 0 001112222222333344455667788889999999999999987666654
No 10
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=92.20 E-value=0.67 Score=49.02 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=29.0
Q ss_pred CCccccCCCcccCCCCcccccccceeccccHH
Q 046435 191 YSKHCRVCDKCVDHFDHHCRWLNNCIGKKNYR 222 (630)
Q Consensus 191 RSkHCs~CnrCV~rfDHHCpWlnNCIG~rNyr 222 (630)
+-|+|..|+..+...-|||+.-|+||-+.-|.
T Consensus 112 ~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHH 143 (299)
T KOG1311|consen 112 EWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHH 143 (299)
T ss_pred ceEEcCcCcccCCCCcccchhhcccccccCCC
Confidence 57999999999999999999999999988664
No 11
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=88.53 E-value=2.5 Score=40.52 Aligned_cols=58 Identities=16% Similarity=0.419 Sum_probs=42.9
Q ss_pred CceecccccccccCCCccccCCCcccCCCCcccccccceeccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046435 177 GMFYCSLCEVEVFKYSKHCRVCDKCVDHFDHHCRWLNNCIGKKNYRQFFTLMVSALLLLILQWVTGIFV 245 (630)
Q Consensus 177 ~~~fC~~C~~~kP~RSkHCs~CnrCV~rfDHHCpWlnNCIG~rNyr~F~lFL~~~~l~~i~~~~~~i~~ 245 (630)
..++|..|+.-+..+-|||..-|.||.+-.| +.+-.|++++....+..++..+..+..
T Consensus 61 Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~-----------~~F~~fl~~~~~~~~~~~~~~~~~~~~ 118 (174)
T PF01529_consen 61 RSHHCRVCNRCVLRFDHHCPWLGNCIGRRNH-----------RYFLLFLLYLCLYCLYFFILSLYYLVR 118 (174)
T ss_pred cceeccccccccccccccchhhccccccccH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999998766 445577776655555554444444433
No 12
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=77.29 E-value=6.8 Score=42.79 Aligned_cols=122 Identities=19% Similarity=0.274 Sum_probs=66.0
Q ss_pred ceecccccccccCCCccccCCCcccCCCCcccccccceeccccHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhc
Q 046435 178 MFYCSLCEVEVFKYSKHCRVCDKCVDHFDHHCRWLNNCIGKKNYRQFFTLMVSALLLLILQW----VTGIFVLISCFLER 253 (630)
Q Consensus 178 ~~fC~~C~~~kP~RSkHCs~CnrCV~rfDHHCpWlnNCIG~rNyr~F~lFL~~~~l~~i~~~----~~~i~~li~~~~~~ 253 (630)
-..|.+|+.=+-.=-|||..-|.||--..| .-+-+|++|.+...+...+.+ +-++|..++.-...
T Consensus 105 SHHCrkCnrCvmkMDHHCPWinnCVG~aNh-----------~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~~~~g~ 173 (414)
T KOG1314|consen 105 SHHCRKCNRCVMKMDHHCPWINNCVGWANH-----------AYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWYIKYGL 173 (414)
T ss_pred cccchHHHHHHHhhccCCcchhhccccccc-----------HHHHHHHHHHHHhcccceeeehhHHHHHHHHHHHhhccc
Confidence 458999999888899999999999975544 346789999888544433333 33343332111111
Q ss_pred cccchhcccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 046435 254 KRYSVDISSKLGSSFSLVPFVIVVAVCTILAMLATLPLAQLFFFHILLIKKGLTTYDYIIAL 315 (630)
Q Consensus 254 ~~~~~~~~~~lgs~~~~~~~~ivv~i~~iL~~l~~l~l~~L~~fHi~LI~~NiTT~E~i~~~ 315 (630)
..+...... -.++-...+.+-+.+.++++ ..+|+.....++..=.+++-.+.-=+++
T Consensus 174 ~hlp~v~ft--~~~li~~vfslgla~gv~la---~t~Lf~~qlk~Il~nrt~IE~wi~~Ka~ 230 (414)
T KOG1314|consen 174 RHLPIVFFT--LSSLIALVFSLGLAIGVVLA---LTMLFFIQLKQILNNRTGIESWIVEKAM 230 (414)
T ss_pred ccCceeecc--HHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 111111110 11111222222233333333 2333334445888888999888644443
No 13
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=76.34 E-value=17 Score=38.64 Aligned_cols=50 Identities=24% Similarity=0.513 Sum_probs=39.0
Q ss_pred ceecccccccccCCCccccCCCcccCCCCcccccccceeccccHHHHHHHHHHHHHHHHHH
Q 046435 178 MFYCSLCEVEVFKYSKHCRVCDKCVDHFDHHCRWLNNCIGKKNYRQFFTLMVSALLLLILQ 238 (630)
Q Consensus 178 ~~fC~~C~~~kP~RSkHCs~CnrCV~rfDHHCpWlnNCIG~rNyr~F~lFL~~~~l~~i~~ 238 (630)
...|+.|+.=+-.=-|||..-|.||--..| +-+-.|+.++..+..++.+.
T Consensus 116 THHCsiC~kCVL~MDHHCPwinnCVG~~NH-----------ryFFlFl~~ltlat~~~~i~ 165 (309)
T KOG1313|consen 116 THHCSICNKCVLKMDHHCPWINNCVGAHNH-----------RYFFLFLFYLTLATSYAAIM 165 (309)
T ss_pred cchhhHHhhHhhccccCCchhhcccccccc-----------hhHHHHHHHHHHHHHHHHHH
Confidence 468999998888889999999999998877 44566888776665555444
No 14
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=72.23 E-value=1.9 Score=28.82 Aligned_cols=21 Identities=33% Similarity=0.830 Sum_probs=18.6
Q ss_pred ecccccccccCCCccccCCCc
Q 046435 180 YCSLCEVEVFKYSKHCRVCDK 200 (630)
Q Consensus 180 fC~~C~~~kP~RSkHCs~Cnr 200 (630)
||..|....++.+++|..|+.
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 689999999999999998875
No 15
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=69.29 E-value=1.8 Score=50.13 Aligned_cols=52 Identities=12% Similarity=0.039 Sum_probs=45.1
Q ss_pred ceecccccccccCCCccccCCCcccCCCCcccccccceeccccHHHHHHHHHH
Q 046435 178 MFYCSLCEVEVFKYSKHCRVCDKCVDHFDHHCRWLNNCIGKKNYRQFFTLMVS 230 (630)
Q Consensus 178 ~~fC~~C~~~kP~RSkHCs~CnrCV~rfDHHCpWlnNCIG~rNyr~F~lFL~~ 230 (630)
...|..|....+.+..+|..|-.|+..|++||.|+. ||+.+|-..|....+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~~~~~~~~~~i~ 376 (600)
T KOG0509|consen 325 TCLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFS-KITPYTLFDFHYCFII 376 (600)
T ss_pred heeccchhhccccccchhHHHHHHHHHHHHHHhhhe-eccchhhhhhHHHHHH
Confidence 357999999999999999999999999999999999 9999998765544333
No 16
>PF12773 DZR: Double zinc ribbon
Probab=62.31 E-value=6.3 Score=30.43 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=28.0
Q ss_pred cCceeccccccccc---CCCccccCCCcccCCCCccccc
Q 046435 176 DGMFYCSLCEVEVF---KYSKHCRVCDKCVDHFDHHCRW 211 (630)
Q Consensus 176 ~~~~fC~~C~~~kP---~RSkHCs~CnrCV~rfDHHCpW 211 (630)
++.+||..|....+ ...++|..|+.=+...+.+|++
T Consensus 10 ~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~~ 48 (50)
T PF12773_consen 10 DDAKFCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCPN 48 (50)
T ss_pred ccccCChhhcCChhhccCCCCCCcCCcCCCcCCcCccCc
Confidence 45678999988777 3466788888888888888875
No 17
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=58.89 E-value=41 Score=36.42 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=26.6
Q ss_pred CCccccCCCcccCCCCcccccccceeccccHH
Q 046435 191 YSKHCRVCDKCVDHFDHHCRWLNNCIGKKNYR 222 (630)
Q Consensus 191 RSkHCs~CnrCV~rfDHHCpWlnNCIG~rNyr 222 (630)
+.+.|..|+.-....-|||.--+-||.+.-|.
T Consensus 108 ~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHH 139 (307)
T KOG1315|consen 108 AVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHH 139 (307)
T ss_pred CceeecccccccCCccccchhhhhhhhccccC
Confidence 66788888888888889999989999887654
No 18
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=57.93 E-value=12 Score=38.74 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhhhheecCCCC
Q 046435 45 IMGIYSPLIGCVFGLYIWCAAADPADS 71 (630)
Q Consensus 45 ~i~Iys~L~l~V~~lYirc~~iDPgDP 71 (630)
+.++.+++++.++.||-.|...|||+|
T Consensus 196 aliVitl~vf~LvgLyr~C~k~dPg~p 222 (259)
T PF07010_consen 196 ALIVITLSVFTLVGLYRMCWKTDPGTP 222 (259)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 334556677788889999999999998
No 19
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=56.43 E-value=5.7 Score=27.13 Aligned_cols=22 Identities=27% Similarity=0.742 Sum_probs=18.8
Q ss_pred eecccccccccCCCccccCCCc
Q 046435 179 FYCSLCEVEVFKYSKHCRVCDK 200 (630)
Q Consensus 179 ~fC~~C~~~kP~RSkHCs~Cnr 200 (630)
.+|..|....++.+++|..|+.
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCcccccChhhCC
Confidence 5899999988888999988875
No 20
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=49.04 E-value=9.6 Score=30.18 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.4
Q ss_pred CceecccccccccCCCccccCCCc
Q 046435 177 GMFYCSLCEVEVFKYSKHCRVCDK 200 (630)
Q Consensus 177 ~~~fC~~C~~~kP~RSkHCs~Cnr 200 (630)
+...|..|...-|+|+..|+.|+.
T Consensus 13 ~k~ICrkC~ARnp~~A~~CRKCg~ 36 (48)
T PRK04136 13 NKKICMRCNARNPWRATKCRKCGY 36 (48)
T ss_pred cccchhcccCCCCccccccccCCC
Confidence 457899999999999999998875
No 21
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=45.24 E-value=1.6e+02 Score=33.19 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=24.5
Q ss_pred cCceecccccccccCCCccccCCCcccCCCCcc
Q 046435 176 DGMFYCSLCEVEVFKYSKHCRVCDKCVDHFDHH 208 (630)
Q Consensus 176 ~~~~fC~~C~~~kP~RSkHCs~CnrCV~rfDHH 208 (630)
++..-|+.|+.-.+....||..|+.-..+..++
T Consensus 219 ~~l~~C~~Cd~l~~~~~a~CpRC~~~L~~~~~~ 251 (419)
T PRK15103 219 QGLRSCSCCTAILPADQPVCPRCHTKGYVRRRN 251 (419)
T ss_pred cCCCcCCCCCCCCCCCCCCCCCCCCcCcCCCCC
Confidence 456679999998777667888888877655444
No 22
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=42.33 E-value=13 Score=44.47 Aligned_cols=22 Identities=27% Similarity=0.665 Sum_probs=18.1
Q ss_pred eeccccccccc-------CCCccccCCCc
Q 046435 179 FYCSLCEVEVF-------KYSKHCRVCDK 200 (630)
Q Consensus 179 ~fC~~C~~~kP-------~RSkHCs~Cnr 200 (630)
..|..|+..-. .|-|||+.|++
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGr 489 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGI 489 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCcc
Confidence 57999998764 38999999887
No 23
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.26 E-value=19 Score=39.46 Aligned_cols=24 Identities=13% Similarity=-0.017 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhhhheecCCCCccc
Q 046435 51 PLIGCVFGLYIWCAAADPADSGVF 74 (630)
Q Consensus 51 ~L~l~V~~lYirc~~iDPgDPgi~ 74 (630)
+|+++=+++|.....+-+|-.|++
T Consensus 234 vLaIvRlILF~I~~il~~g~~g~W 257 (372)
T KOG2927|consen 234 VLAIVRLILFGITWILTGGKHGFW 257 (372)
T ss_pred HHHHHHHHHHHHHHHHhCCCCceE
Confidence 344444555655555666555543
No 24
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=38.70 E-value=17 Score=25.15 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=18.7
Q ss_pred eecccccccccCCCccccCCCc
Q 046435 179 FYCSLCEVEVFKYSKHCRVCDK 200 (630)
Q Consensus 179 ~fC~~C~~~kP~RSkHCs~Cnr 200 (630)
+.|..|...+|.-++-|..||.
T Consensus 1 K~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 1 KTCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CcCCCCcCCchhhcCcCCCCCC
Confidence 3699999999999999988874
No 25
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=38.29 E-value=1.2e+02 Score=27.02 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 046435 272 PFVIVVAVCTILAMLATLPLAQLFFFHILLIKKGLTTYDYI 312 (630)
Q Consensus 272 ~~~ivv~i~~iL~~l~~l~l~~L~~fHi~LI~~NiTT~E~i 312 (630)
++-.+.+++++++++. +.++++|.+|--|++-+++|++
T Consensus 44 ~wRalSii~FIlG~vl---~lGilifs~y~~C~~~~~~~r~ 81 (91)
T PHA02680 44 VWRALSVTCFIVGAVL---LLGLFVFSMYRKCSGSMPYERL 81 (91)
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHhcccCCCceeecc
Confidence 4455556666666543 4457888888888888888655
No 26
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=38.23 E-value=12 Score=30.59 Aligned_cols=36 Identities=28% Similarity=0.783 Sum_probs=27.1
Q ss_pred ecccccccccCCC-------ccccCCCcccCCC-Ccccccccceecc
Q 046435 180 YCSLCEVEVFKYS-------KHCRVCDKCVDHF-DHHCRWLNNCIGK 218 (630)
Q Consensus 180 fC~~C~~~kP~RS-------kHCs~CnrCV~rf-DHHCpWlnNCIG~ 218 (630)
-|..|+..-|+-+ +-|..|..|+..+ +++|| ||=|.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CP---NCgGe 50 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCP---NCGGE 50 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCc---CCCCc
Confidence 4666666666544 5688999999998 99999 67664
No 27
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=36.20 E-value=2.3e+02 Score=31.71 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=22.3
Q ss_pred ccCceeccccccc-ccCCCccccCCCcccCCCCcc
Q 046435 175 EDGMFYCSLCEVE-VFKYSKHCRVCDKCVDHFDHH 208 (630)
Q Consensus 175 ~~~~~fC~~C~~~-kP~RSkHCs~CnrCV~rfDHH 208 (630)
+++..-|+.|+.. .+....||..|+.-..+..++
T Consensus 212 ~~~~~~C~~Cd~~~~~~~~a~CpRC~~~L~~~~~~ 246 (403)
T TIGR00155 212 PLKLRSCSACHTTILPAQEPVCPRCSTPLYVRRRN 246 (403)
T ss_pred ccCCCcCCCCCCccCCCCCcCCcCCCCcccCCCCC
Confidence 3456679999984 344455788777776555444
No 28
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=35.55 E-value=11 Score=42.43 Aligned_cols=27 Identities=22% Similarity=0.795 Sum_probs=21.2
Q ss_pred cCceeccccccc--ccCCCccccCCCccc
Q 046435 176 DGMFYCSLCEVE--VFKYSKHCRVCDKCV 202 (630)
Q Consensus 176 ~~~~fC~~C~~~--kP~RSkHCs~CnrCV 202 (630)
....+|+.|... --.|-|||+.||+-+
T Consensus 178 s~V~~CP~Ca~~F~l~rRrHHCRLCG~Vm 206 (505)
T KOG1842|consen 178 SSVQFCPECANSFGLTRRRHHCRLCGRVM 206 (505)
T ss_pred CcccccccccchhhhHHHhhhhhhcchHH
Confidence 356899999874 346889999999854
No 29
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.01 E-value=31 Score=38.42 Aligned_cols=23 Identities=39% Similarity=0.928 Sum_probs=17.2
Q ss_pred CCCccccCCCcccCCCCcccccccceecc
Q 046435 190 KYSKHCRVCDKCVDHFDHHCRWLNNCIGK 218 (630)
Q Consensus 190 ~RSkHCs~CnrCV~rfDHHCpWlnNCIG~ 218 (630)
.|-.||-.|+. +|| +|+.||||.
T Consensus 12 ~~p~l~~tC~e----~~h--~w~~~c~ga 34 (460)
T KOG1398|consen 12 ARPSLAETCDE----ADH--SWVANCIGA 34 (460)
T ss_pred cCchHhhhhhh----ccC--CcccchhHH
Confidence 44557777764 677 699999997
No 30
>PRK05978 hypothetical protein; Provisional
Probab=31.77 E-value=2.1e+02 Score=27.90 Aligned_cols=27 Identities=30% Similarity=0.663 Sum_probs=17.4
Q ss_pred eecccccccccCC-----CccccCCCcccCCCCcc
Q 046435 179 FYCSLCEVEVFKY-----SKHCRVCDKCVDHFDHH 208 (630)
Q Consensus 179 ~fC~~C~~~kP~R-----SkHCs~CnrCV~rfDHH 208 (630)
..|..|..-+--+ ..+|+. |=.+|.||
T Consensus 34 grCP~CG~G~LF~g~Lkv~~~C~~---CG~~~~~~ 65 (148)
T PRK05978 34 GRCPACGEGKLFRAFLKPVDHCAA---CGEDFTHH 65 (148)
T ss_pred CcCCCCCCCcccccccccCCCccc---cCCccccC
Confidence 4799998877633 334554 44677777
No 31
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=31.74 E-value=1e+02 Score=26.49 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 046435 44 IIMGIYSPLIGCVFGLYIW 62 (630)
Q Consensus 44 i~i~Iys~L~l~V~~lYir 62 (630)
++.+++.+.++.+|+.|+.
T Consensus 54 vaagl~ll~lig~Fis~vM 72 (81)
T KOG3488|consen 54 VAAGLFLLCLIGTFISLVM 72 (81)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456666666667776654
No 32
>KOG4399 consensus C2HC-type Zn-finger protein [General function prediction only]
Probab=31.66 E-value=13 Score=39.16 Aligned_cols=31 Identities=32% Similarity=0.822 Sum_probs=25.4
Q ss_pred cccCceecccccccccCCCccccCCCcccCC
Q 046435 174 SEDGMFYCSLCEVEVFKYSKHCRVCDKCVDH 204 (630)
Q Consensus 174 ~~~~~~fC~~C~~~kP~RSkHCs~CnrCV~r 204 (630)
.+++.+||..|.+|+...--||..|+.|..+
T Consensus 200 ~EE~~~~~~~~~~Yv~~~~~H~~~~~S~~~~ 230 (325)
T KOG4399|consen 200 TEEGYRFCSPCQRYVSLENQHCEHCNSCTSK 230 (325)
T ss_pred cccceEEEeehHHHHHHHhhhchhhcccccc
Confidence 4577899999999999888888888877653
No 33
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=31.12 E-value=19 Score=29.51 Aligned_cols=25 Identities=32% Similarity=0.857 Sum_probs=12.2
Q ss_pred ceecccccccc--cCCCccccCCCccc
Q 046435 178 MFYCSLCEVEV--FKYSKHCRVCDKCV 202 (630)
Q Consensus 178 ~~fC~~C~~~k--P~RSkHCs~CnrCV 202 (630)
...|..|...= -.|-|||+.||+.|
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~v 35 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVV 35 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEE
Confidence 45888888643 46889999999854
No 34
>PF12773 DZR: Double zinc ribbon
Probab=29.62 E-value=35 Score=26.22 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=21.2
Q ss_pred cCceecccccccccCCCccccCCC
Q 046435 176 DGMFYCSLCEVEVFKYSKHCRVCD 199 (630)
Q Consensus 176 ~~~~fC~~C~~~kP~RSkHCs~Cn 199 (630)
....+|..|....++.+++|..|+
T Consensus 27 ~~~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 27 QSKKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred CCCCCCcCCcCCCcCCcCccCccc
Confidence 446799999999999999999886
No 35
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=27.90 E-value=2.2e+02 Score=34.76 Aligned_cols=18 Identities=39% Similarity=0.726 Sum_probs=9.9
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 046435 220 NYRQFFTLMVSALLLLIL 237 (630)
Q Consensus 220 Nyr~F~lFL~~~~l~~i~ 237 (630)
-||+....++..+++++.
T Consensus 411 ~yR~~~~lil~~~llLIv 428 (806)
T PF05478_consen 411 SYRWIVGLILCCVLLLIV 428 (806)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356666655555555443
No 36
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=27.00 E-value=60 Score=26.87 Aligned_cols=22 Identities=18% Similarity=0.528 Sum_probs=14.5
Q ss_pred eecccccccccCCCcccc-CCCc
Q 046435 179 FYCSLCEVEVFKYSKHCR-VCDK 200 (630)
Q Consensus 179 ~fC~~C~~~kP~RSkHCs-~Cnr 200 (630)
+.|..|....|+--..|+ .|+.
T Consensus 4 kHC~~CG~~Ip~~~~fCS~~C~~ 26 (59)
T PF09889_consen 4 KHCPVCGKPIPPDESFCSPKCRE 26 (59)
T ss_pred CcCCcCCCcCCcchhhhCHHHHH
Confidence 467777777777766774 5544
No 37
>COG4640 Predicted membrane protein [Function unknown]
Probab=26.78 E-value=36 Score=37.92 Aligned_cols=42 Identities=17% Similarity=0.359 Sum_probs=29.8
Q ss_pred ceecccccccccCCCccccCCCcccCCCCcccc-cccceeccc
Q 046435 178 MFYCSLCEVEVFKYSKHCRVCDKCVDHFDHHCR-WLNNCIGKK 219 (630)
Q Consensus 178 ~~fC~~C~~~kP~RSkHCs~CnrCV~rfDHHCp-WlnNCIG~r 219 (630)
|+||..|...+-.-+..|..||.=+..+----. -+|+-+-.|
T Consensus 1 M~fC~kcG~qk~Ed~~qC~qCG~~~t~~~sqan~~tn~i~~tr 43 (465)
T COG4640 1 MKFCPKCGSQKAEDDVQCTQCGHKFTSRQSQANKSTNEIIQTR 43 (465)
T ss_pred CCcccccccccccccccccccCCcCCchhhhhhHHHHHHHHhh
Confidence 579999998898888889999887665544333 444444444
No 38
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=26.30 E-value=45 Score=26.92 Aligned_cols=25 Identities=20% Similarity=0.572 Sum_probs=16.9
Q ss_pred CceecccccccccCCCccccC--CCcc
Q 046435 177 GMFYCSLCEVEVFKYSKHCRV--CDKC 201 (630)
Q Consensus 177 ~~~fC~~C~~~kP~RSkHCs~--CnrC 201 (630)
+...|..|...-|+|+..|+. |+.+
T Consensus 16 ~k~ICrkCyarl~~~A~nCRKkkCGhs 42 (52)
T PF01020_consen 16 DKMICRKCYARLPPRATNCRKKKCGHS 42 (52)
T ss_dssp S-EEETTT--EE-TTSSS-TSSSCTS-
T ss_pred cceecccccCcCCCCccceecccCCCC
Confidence 457999999999999999998 7764
No 39
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=25.29 E-value=3.4e+02 Score=30.43 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=20.9
Q ss_pred cCceecccccccc--c----CCCccccCCCcccCCCCcc
Q 046435 176 DGMFYCSLCEVEV--F----KYSKHCRVCDKCVDHFDHH 208 (630)
Q Consensus 176 ~~~~fC~~C~~~k--P----~RSkHCs~CnrCV~rfDHH 208 (630)
++..-|+.|+.-. | ...-+|..|+.-..+.+++
T Consensus 11 ~~~~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~~~~~ 49 (403)
T TIGR00155 11 AKHILCSQCDMLVALPRIESGQKAACPRCGTTLTVGWDW 49 (403)
T ss_pred CCeeeCCCCCCcccccCCCCCCeeECCCCCCCCcCCCCC
Confidence 3455699999643 2 2234688888877665554
No 40
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=24.28 E-value=3e+02 Score=26.37 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 046435 222 RQFFTLMVSALLLLILQWV 240 (630)
Q Consensus 222 r~F~lFL~~~~l~~i~~~~ 240 (630)
+||-+|++++..+.++-++
T Consensus 39 ~Y~~LfiVFl~AG~vLw~v 57 (141)
T PRK13743 39 IYFDLFIVFLTAGIVLWVI 57 (141)
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 6777888777766655333
No 41
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=23.68 E-value=87 Score=27.26 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=22.4
Q ss_pred cchhHHHHHHHHHHHHhheeeeeccccch
Q 046435 10 YHPLQVVAVAVFMALGFAFYVFFAPFVGK 38 (630)
Q Consensus 10 lH~lQVVai~Vf~lL~~afYvf~aPfLg~ 38 (630)
+-..|++.+++.++++++.|.++..+++.
T Consensus 17 lT~RQl~~l~~~~~~~~~~~~~~~~~l~~ 45 (93)
T PF12666_consen 17 LTLRQLICLAIGALVGVGVYLLLWFFLGP 45 (93)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 44579988888888888888777777763
No 42
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=23.00 E-value=3.5e+02 Score=27.86 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=5.5
Q ss_pred CcccCCCCc
Q 046435 199 DKCVDHFDH 207 (630)
Q Consensus 199 nrCV~rfDH 207 (630)
..|+.|||+
T Consensus 65 ~~C~ykFd~ 73 (211)
T PF07062_consen 65 LHCTYKFDY 73 (211)
T ss_pred ceEEEEcCc
Confidence 356677773
No 43
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=22.15 E-value=38 Score=35.33 Aligned_cols=13 Identities=23% Similarity=0.087 Sum_probs=10.2
Q ss_pred ccCCCCccccccc
Q 046435 201 CVDHFDHHCRWLN 213 (630)
Q Consensus 201 CV~rfDHHCpWln 213 (630)
=....+|||||..
T Consensus 37 Hrsye~H~Cp~~~ 49 (250)
T KOG3183|consen 37 HRSYESHHCPKGL 49 (250)
T ss_pred cchHhhcCCCccc
Confidence 3567899999975
No 45
>PF08600 Rsm1: Rsm1-like; InterPro: IPR013909 This entry contains Nuclear-interacting partner of ALK (NIPA) and NIPA like proteins, as well as mRNA export factor Rsm1, all of which contain a C3HC-type zinc finger. The domain represented in this entry is found C-terminal to the zinc-finger like domain IPR012935 from INTERPRO. Rsm1 is involved in mRNA export from the nucleus []. NIPA is an essential component of an SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1). Its cell-cycle-dependent phosphorylation regulates the assembly of the SCF(NIPA) complex, restricting CCNB1 ubiquitination activity to interphase. Its inactivation results in nuclear accumulation of CCNB1 in interphase and premature mitotic entry [].
Probab=22.06 E-value=44 Score=29.62 Aligned_cols=41 Identities=15% Similarity=0.378 Sum_probs=21.1
Q ss_pred ceecccccccccCCCccccCCC-----c---ccCCCCcccccccceecc
Q 046435 178 MFYCSLCEVEVFKYSKHCRVCD-----K---CVDHFDHHCRWLNNCIGK 218 (630)
Q Consensus 178 ~~fC~~C~~~kP~RSkHCs~Cn-----r---CV~rfDHHCpWlnNCIG~ 218 (630)
...|..|......=..+-..-+ . =+..+-.||||+|.-...
T Consensus 19 ~~~C~~C~Rr~GLW~f~~~~ss~~~~~~~~d~~~eHr~~CPwv~~~~q~ 67 (91)
T PF08600_consen 19 LLSCSYCFRRLGLWMFKSKESSDSDPMSPFDPLEEHREYCPWVNPSTQS 67 (91)
T ss_pred eEEccccCcEeeeeecccCccCCCCcCCCCCCcccccccCCccCCcccc
Confidence 6688888766432111111111 1 223334689999976543
No 46
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=20.72 E-value=2.4e+02 Score=25.03 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=8.3
Q ss_pred HHHHHHHHHhcCCchHHHH
Q 046435 294 LFFFHILLIKKGLTTYDYI 312 (630)
Q Consensus 294 L~~fHi~LI~~NiTT~E~i 312 (630)
+|+.-++.|.+|.-..|.-
T Consensus 51 lFi~ll~~i~~~~e~~~~~ 69 (84)
T PF06143_consen 51 LFILLLYNINKNAEQDRAE 69 (84)
T ss_pred HHHHHHHHHHHHHhhhHHH
Confidence 3333345555555333333
Done!