Query 046435
Match_columns 630
No_of_seqs 314 out of 1383
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 21:14:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_g 50S ribosomal protein L 46.6 9.9 0.00034 29.4 2.1 26 177-202 13-38 (51)
2 2knc_B Integrin beta-3; transm 46.3 37 0.0013 28.3 5.8 24 289-312 24-47 (79)
3 2ayj_A 50S ribosomal protein L 45.3 10 0.00034 29.9 2.0 25 177-201 18-42 (56)
4 1x4u_A Zinc finger, FYVE domai 39.4 12 0.00042 31.1 1.9 24 178-201 14-39 (84)
5 1z2q_A LM5-1; membrane protein 37.3 15 0.0005 30.7 2.0 25 178-202 21-47 (84)
6 2yw8_A RUN and FYVE domain-con 36.8 14 0.00048 30.7 1.8 26 177-202 18-45 (82)
7 1joc_A EEA1, early endosomal a 36.6 13 0.00045 33.4 1.7 24 178-201 69-94 (125)
8 1dvp_A HRS, hepatocyte growth 31.2 16 0.00055 35.6 1.4 24 179-202 162-187 (220)
9 1wfk_A Zinc finger, FYVE domai 30.8 17 0.0006 30.6 1.4 25 177-201 8-34 (88)
10 1vfy_A Phosphatidylinositol-3- 28.5 19 0.00065 29.2 1.2 23 180-202 13-37 (73)
11 3zyq_A Hepatocyte growth facto 25.5 22 0.00074 35.0 1.2 23 180-202 166-190 (226)
12 3t7l_A Zinc finger FYVE domain 25.1 28 0.00096 29.4 1.7 25 178-202 20-46 (90)
13 1y02_A CARP2, FYVE-ring finger 22.3 24 0.00082 31.7 0.7 23 179-201 20-44 (120)
14 2kix_A BM2 protein; channel, t 21.1 34 0.0012 23.4 1.1 21 10-30 2-22 (33)
No 1
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.63 E-value=9.9 Score=29.39 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.8
Q ss_pred CceecccccccccCCCccccCCCccc
Q 046435 177 GMFYCSLCEVEVFKYSKHCRVCDKCV 202 (630)
Q Consensus 177 ~~~fC~~C~~~kP~RSkHCs~CnrCV 202 (630)
....|..|....|.++..|+.|+.--
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~ 38 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKR 38 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCC
T ss_pred CCccCCCCCCcCCCCceecCCCCCcc
Confidence 46789999999999999999998753
No 2
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=46.34 E-value=37 Score=28.30 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHH
Q 046435 289 LPLAQLFFFHILLIKKGLTTYDYI 312 (630)
Q Consensus 289 l~l~~L~~fHi~LI~~NiTT~E~i 312 (630)
+.+..|+++-++......--|+.+
T Consensus 24 iGllllliwk~~~~i~DrrE~~kF 47 (79)
T 2knc_B 24 IGLAALLIWKLLITIHDRKEFAKF 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555544433333333333
No 3
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=45.30 E-value=10 Score=29.94 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.9
Q ss_pred CceecccccccccCCCccccCCCcc
Q 046435 177 GMFYCSLCEVEVFKYSKHCRVCDKC 201 (630)
Q Consensus 177 ~~~fC~~C~~~kP~RSkHCs~CnrC 201 (630)
+...|..|...-|+++.-|+.|+..
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCC
T ss_pred chhhhccccCcCCcccccccCCCCC
Confidence 4579999999999999999988754
No 4
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.44 E-value=12 Score=31.08 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=18.2
Q ss_pred ceeccccccc--ccCCCccccCCCcc
Q 046435 178 MFYCSLCEVE--VFKYSKHCRVCDKC 201 (630)
Q Consensus 178 ~~fC~~C~~~--kP~RSkHCs~CnrC 201 (630)
...|..|... .-.|-|||+.|++-
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcE
Confidence 4578888874 34688999999874
No 5
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=37.30 E-value=15 Score=30.68 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=18.5
Q ss_pred ceeccccccc--ccCCCccccCCCccc
Q 046435 178 MFYCSLCEVE--VFKYSKHCRVCDKCV 202 (630)
Q Consensus 178 ~~fC~~C~~~--kP~RSkHCs~CnrCV 202 (630)
...|..|... .-.|-|||+.|++-+
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccchhcccccCCCcEE
Confidence 4578888874 346789999998843
No 6
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=36.84 E-value=14 Score=30.66 Aligned_cols=26 Identities=31% Similarity=0.691 Sum_probs=18.8
Q ss_pred Cceeccccccc--ccCCCccccCCCccc
Q 046435 177 GMFYCSLCEVE--VFKYSKHCRVCDKCV 202 (630)
Q Consensus 177 ~~~fC~~C~~~--kP~RSkHCs~CnrCV 202 (630)
+...|..|... .-.|-|||+.||+-+
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEE
Confidence 34578888864 345789999999843
No 7
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=36.56 E-value=13 Score=33.39 Aligned_cols=24 Identities=29% Similarity=0.623 Sum_probs=18.3
Q ss_pred ceeccccccc--ccCCCccccCCCcc
Q 046435 178 MFYCSLCEVE--VFKYSKHCRVCDKC 201 (630)
Q Consensus 178 ~~fC~~C~~~--kP~RSkHCs~CnrC 201 (630)
...|..|... ...|-|||+.||+.
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCCCcCcCCccccccccccCCCCCeE
Confidence 4578888874 34688999999984
No 8
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.21 E-value=16 Score=35.58 Aligned_cols=24 Identities=33% Similarity=0.757 Sum_probs=17.9
Q ss_pred eeccccccc--ccCCCccccCCCccc
Q 046435 179 FYCSLCEVE--VFKYSKHCRVCDKCV 202 (630)
Q Consensus 179 ~fC~~C~~~--kP~RSkHCs~CnrCV 202 (630)
..|..|... .-.|-|||+.||+.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 478888763 346889999999853
No 9
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=30.83 E-value=17 Score=30.65 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=18.6
Q ss_pred Cceeccccccc--ccCCCccccCCCcc
Q 046435 177 GMFYCSLCEVE--VFKYSKHCRVCDKC 201 (630)
Q Consensus 177 ~~~fC~~C~~~--kP~RSkHCs~CnrC 201 (630)
+...|..|... ...|-|||+.|++-
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCE
Confidence 34578888874 34678999999984
No 10
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=28.51 E-value=19 Score=29.16 Aligned_cols=23 Identities=26% Similarity=0.829 Sum_probs=16.9
Q ss_pred eccccccc--ccCCCccccCCCccc
Q 046435 180 YCSLCEVE--VFKYSKHCRVCDKCV 202 (630)
Q Consensus 180 fC~~C~~~--kP~RSkHCs~CnrCV 202 (630)
.|..|... .-.|-|||+.||+-+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCCccCCccccccCCCCCEEE
Confidence 58888764 345789999999843
No 11
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.46 E-value=22 Score=34.99 Aligned_cols=23 Identities=35% Similarity=0.895 Sum_probs=16.8
Q ss_pred eccccccc--ccCCCccccCCCccc
Q 046435 180 YCSLCEVE--VFKYSKHCRVCDKCV 202 (630)
Q Consensus 180 fC~~C~~~--kP~RSkHCs~CnrCV 202 (630)
.|..|... .-.|-|||+.||+.+
T Consensus 166 ~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 166 ECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCcCcCCCCCccccccccCCCcCEe
Confidence 68888753 235789999998853
No 12
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=25.07 E-value=28 Score=29.37 Aligned_cols=25 Identities=36% Similarity=0.745 Sum_probs=18.0
Q ss_pred ceeccccccc--ccCCCccccCCCccc
Q 046435 178 MFYCSLCEVE--VFKYSKHCRVCDKCV 202 (630)
Q Consensus 178 ~~fC~~C~~~--kP~RSkHCs~CnrCV 202 (630)
...|..|... .-.|-|||+.|++.+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 4578888863 345789999998743
No 13
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=22.26 E-value=24 Score=31.73 Aligned_cols=23 Identities=22% Similarity=0.428 Sum_probs=17.3
Q ss_pred eeccccccc--ccCCCccccCCCcc
Q 046435 179 FYCSLCEVE--VFKYSKHCRVCDKC 201 (630)
Q Consensus 179 ~fC~~C~~~--kP~RSkHCs~CnrC 201 (630)
..|..|... ...|-|||+.||+.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 478888763 34688999999984
No 14
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=21.14 E-value=34 Score=23.44 Aligned_cols=21 Identities=19% Similarity=0.575 Sum_probs=15.9
Q ss_pred cchhHHHHHHHHHHHHhheee
Q 046435 10 YHPLQVVAVAVFMALGFAFYV 30 (630)
Q Consensus 10 lH~lQVVai~Vf~lL~~afYv 30 (630)
+.|||++.|.-|.+....|.+
T Consensus 2 lep~qilsi~sfilsalhf~a 22 (33)
T 2kix_A 2 LEPFQILSISSFILSALHFIA 22 (33)
T ss_dssp CTTTHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHH
Confidence 568999999888876666544
Done!