Query 046435
Match_columns 630
No_of_seqs 314 out of 1383
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 21:14:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046435.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046435hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 54.6 2.7 0.0002 31.1 2.0 24 177-200 18-41 (56)
2 d1joca1 g.50.1.1 (A:1348-1411) 41.5 4.9 0.00036 30.1 1.6 25 178-202 8-34 (64)
3 d2dmda2 g.37.1.1 (A:8-33) Zinc 37.0 4.1 0.0003 25.2 0.4 15 193-207 2-16 (26)
4 d1vfya_ g.50.1.1 (A:) vps27p p 35.6 5.8 0.00042 29.9 1.2 23 180-202 7-31 (67)
5 d2dkta2 g.93.1.1 (A:82-137) RI 35.5 6.7 0.00049 29.1 1.5 16 189-204 31-46 (56)
6 d2dkta2 g.93.1.1 (A:82-137) RI 29.0 4.4 0.00032 30.1 -0.6 42 178-219 2-47 (56)
7 d1wfka_ g.50.1.1 (A:) Zinc fin 27.7 8.7 0.00064 30.6 1.0 24 179-202 10-35 (88)
8 d1dvpa2 g.50.1.1 (A:149-220) H 27.0 11 0.00077 28.9 1.4 23 180-202 15-39 (72)
9 d2pg3a1 c.26.2.1 (A:1-230) Que 25.6 5.4 0.00039 35.9 -0.8 24 179-204 183-206 (230)
10 d2axti1 f.23.37.1 (I:1-35) Pho 24.0 36 0.0026 22.5 3.3 7 64-70 24-30 (35)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=54.64 E-value=2.7 Score=31.14 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.1
Q ss_pred CceecccccccccCCCccccCCCc
Q 046435 177 GMFYCSLCEVEVFKYSKHCRVCDK 200 (630)
Q Consensus 177 ~~~fC~~C~~~kP~RSkHCs~Cnr 200 (630)
+...|..|...-|+|+..|+.|+.
T Consensus 18 ~k~ICrkC~AR~p~rAt~CRKCg~ 41 (56)
T d2ayja1 18 LKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCC
T ss_pred hhHHHhhccccCCccccccccCCC
Confidence 457999999999999999997765
No 2
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.48 E-value=4.9 Score=30.08 Aligned_cols=25 Identities=28% Similarity=0.599 Sum_probs=18.1
Q ss_pred ceeccccccc--ccCCCccccCCCccc
Q 046435 178 MFYCSLCEVE--VFKYSKHCRVCDKCV 202 (630)
Q Consensus 178 ~~fC~~C~~~--kP~RSkHCs~CnrCV 202 (630)
..-|..|... .-.|-|||+.||+.|
T Consensus 8 ~~~C~~C~~~F~~~~rrHHCR~CG~v~ 34 (64)
T d1joca1 8 VQNCMACGKGFSVTVRRHHCRQCGNIF 34 (64)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCcCCcccCCccccchhhhCCee
Confidence 3468888763 345789999999854
No 3
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.99 E-value=4.1 Score=25.23 Aligned_cols=15 Identities=40% Similarity=1.021 Sum_probs=12.0
Q ss_pred ccccCCCcccCCCCc
Q 046435 193 KHCRVCDKCVDHFDH 207 (630)
Q Consensus 193 kHCs~CnrCV~rfDH 207 (630)
|-|.+|++|..+-|.
T Consensus 2 hkc~~c~kcfsrkdk 16 (26)
T d2dmda2 2 HKCEVCGKCFSRKDK 16 (26)
T ss_dssp CCBTTTTBCCCCHHH
T ss_pred CccchhhhHhcchhH
Confidence 569999999887663
No 4
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.58 E-value=5.8 Score=29.94 Aligned_cols=23 Identities=26% Similarity=0.829 Sum_probs=16.9
Q ss_pred eccccccc--ccCCCccccCCCccc
Q 046435 180 YCSLCEVE--VFKYSKHCRVCDKCV 202 (630)
Q Consensus 180 fC~~C~~~--kP~RSkHCs~CnrCV 202 (630)
-|..|... .-.|-|||+.||+.+
T Consensus 7 ~C~~C~~~F~~~~rkhhCr~CG~~f 31 (67)
T d1vfya_ 7 ACMICSKKFSLLNRKHHCRSCGGVF 31 (67)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred ccccCCCcccCcccccccccCCCEe
Confidence 47778763 346789999999854
No 5
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.48 E-value=6.7 Score=29.07 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=9.0
Q ss_pred cCCCccccCCCcccCC
Q 046435 189 FKYSKHCRVCDKCVDH 204 (630)
Q Consensus 189 P~RSkHCs~CnrCV~r 204 (630)
...-.||..|+-|+..
T Consensus 31 ~~~ffHC~~C~~C~~~ 46 (56)
T d2dkta2 31 KEDFFHCLKCNLCLTT 46 (56)
T ss_dssp GGGEEEETTTTEEEEG
T ss_pred CccccccCccccccCc
Confidence 3344566666666643
No 6
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.04 E-value=4.4 Score=30.12 Aligned_cols=42 Identities=31% Similarity=0.619 Sum_probs=31.5
Q ss_pred ceeccccccccc-CCCccccCCCcccCCC---Ccccccccceeccc
Q 046435 178 MFYCSLCEVEVF-KYSKHCRVCDKCVDHF---DHHCRWLNNCIGKK 219 (630)
Q Consensus 178 ~~fC~~C~~~kP-~RSkHCs~CnrCV~rf---DHHCpWlnNCIG~r 219 (630)
..||..|+.+-- ....||..||-|-.+- =.||.=-|.|+...
T Consensus 2 ~YfC~iC~l~dddk~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~~~ 47 (56)
T d2dkta2 2 EYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTN 47 (56)
T ss_dssp SEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGG
T ss_pred ceECCcCCcccCCCCcccCCCCCceeecCCccccccCccccccCcc
Confidence 469999998843 3357999999998652 24899889998653
No 7
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.67 E-value=8.7 Score=30.57 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=17.7
Q ss_pred eeccccccc--ccCCCccccCCCccc
Q 046435 179 FYCSLCEVE--VFKYSKHCRVCDKCV 202 (630)
Q Consensus 179 ~fC~~C~~~--kP~RSkHCs~CnrCV 202 (630)
..|..|... ...|-|||+.|++.+
T Consensus 10 s~C~~C~~~Fs~~~rrhhCr~CG~vf 35 (88)
T d1wfka_ 10 SRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CcCcccCchhccccccccccccChhh
Confidence 368888763 356789999999853
No 8
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=27.00 E-value=11 Score=28.86 Aligned_cols=23 Identities=35% Similarity=0.836 Sum_probs=17.5
Q ss_pred eccccccc--ccCCCccccCCCccc
Q 046435 180 YCSLCEVE--VFKYSKHCRVCDKCV 202 (630)
Q Consensus 180 fC~~C~~~--kP~RSkHCs~CnrCV 202 (630)
.|..|... .-.|-|||+.|++.+
T Consensus 15 ~C~~C~~~F~~~~rrhhCr~CG~~~ 39 (72)
T d1dvpa2 15 VCHRCRVEFTFTNRKHHCRNCGQVF 39 (72)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred ccccCCCcccCccccccccccCCee
Confidence 58888863 346789999999854
No 9
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=25.61 E-value=5.4 Score=35.87 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=18.8
Q ss_pred eecccccccccCCCccccCCCcccCC
Q 046435 179 FYCSLCEVEVFKYSKHCRVCDKCVDH 204 (630)
Q Consensus 179 ~fC~~C~~~kP~RSkHCs~CnrCV~r 204 (630)
.....| +.+.+.+||-.|..|+.|
T Consensus 183 ~~T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 183 YHTLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp HHCCCC--TTSCCTTTTSCSHHHHHH
T ss_pred hccCCC--CCCCCCCCCCCCHhHHHH
Confidence 344566 567788999999999887
No 10
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=24.00 E-value=36 Score=22.45 Aligned_cols=7 Identities=43% Similarity=0.705 Sum_probs=3.8
Q ss_pred heecCCC
Q 046435 64 AAADPAD 70 (630)
Q Consensus 64 ~~iDPgD 70 (630)
..-||+.
T Consensus 24 LSnDP~R 30 (35)
T d2axti1 24 LSGDPAR 30 (35)
T ss_dssp HTTCTTC
T ss_pred ccCCCCC
Confidence 3556654
Done!