BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046437
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 48 MNAAKGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSE 107
M + E + N PPG+RF P D EL+ HYL RK + LP I EV LYKF+P L E
Sbjct: 3 MRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPE 62
Query: 108 KYKPFGENEWYFFTPRER 125
+ FG EWYFFTPR+R
Sbjct: 63 R-ALFGAREWYFFTPRDR 79
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 59 NFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWY 118
+ PPG+RF P D EL+V YL RK I E+ LYKF+P L K FGE EWY
Sbjct: 19 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK-ALFGEKEWY 77
Query: 119 FFTPRER 125
FF+PR+R
Sbjct: 78 FFSPRDR 84
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 59 NFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWY 118
+ PPG+RF P D EL+V YL RK I E+ LYKF+P L K FGE EWY
Sbjct: 16 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK-ALFGEKEWY 74
Query: 119 FFTPRER 125
FF+PR+R
Sbjct: 75 FFSPRDR 81
>pdb|2WSC|A Chain A, Improved Model Of Plant Photosystem I
pdb|2WSE|A Chain A, Improved Model Of Plant Photosystem I
pdb|2WSF|A Chain A, Improved Model Of Plant Photosystem I
Length = 758
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 83 MNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYFFT 121
+N + P I H + N D L++ Y F E FFT
Sbjct: 233 LNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFT 271
>pdb|3LW5|A Chain A, Improved Model Of Plant Photosystem I
Length = 738
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 83 MNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYFFT 121
+N + P I H + N D L++ Y F E FFT
Sbjct: 213 LNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFT 251
>pdb|2O01|A Chain A, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 754
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 83 MNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYFFT 121
+N + P I H + N D L++ Y F E FFT
Sbjct: 229 LNAGVDPKEIPLPHEFILNRDLLAQLYPSFAEGATPFFT 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.142 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,382,104
Number of Sequences: 62578
Number of extensions: 130379
Number of successful extensions: 251
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 6
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)