Query 046437
Match_columns 125
No_of_seqs 125 out of 710
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 21:17:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.9E-29 6.4E-34 194.5 6.5 70 55-125 10-79 (174)
2 1ut7_A No apical meristem prot 100.0 2E-29 7E-34 193.3 6.0 70 55-125 12-81 (171)
3 2ojp_A DHDPS, dihydrodipicolin 39.0 12 0.0004 29.4 1.5 23 55-78 98-120 (292)
4 2nuw_A 2-keto-3-deoxygluconate 36.7 15 0.00052 28.7 1.9 26 53-79 91-117 (288)
5 1ldd_A APC2WHB, anaphase promo 35.3 17 0.00059 24.0 1.7 28 60-88 36-64 (74)
6 2ehh_A DHDPS, dihydrodipicolin 35.0 11 0.00039 29.5 0.9 24 55-79 97-120 (294)
7 1f6k_A N-acetylneuraminate lya 34.4 17 0.00057 28.5 1.7 23 56-79 102-124 (293)
8 3cpr_A Dihydrodipicolinate syn 34.3 12 0.0004 29.6 0.9 24 55-79 113-136 (304)
9 1w3i_A EDA, 2-keto-3-deoxy glu 33.3 17 0.00059 28.4 1.7 24 55-79 93-117 (293)
10 2yxg_A DHDPS, dihydrodipicolin 33.2 18 0.00061 28.2 1.7 22 56-78 98-119 (289)
11 2rfg_A Dihydrodipicolinate syn 32.6 21 0.00073 28.0 2.1 24 55-79 97-120 (297)
12 3b4u_A Dihydrodipicolinate syn 32.5 16 0.00055 28.6 1.4 24 55-79 100-124 (294)
13 2vc6_A MOSA, dihydrodipicolina 32.1 13 0.00046 29.0 0.9 24 55-79 97-120 (292)
14 2wkj_A N-acetylneuraminate lya 32.0 19 0.00066 28.4 1.7 23 56-79 109-131 (303)
15 3dz1_A Dihydrodipicolinate syn 31.7 22 0.00074 28.2 2.0 22 56-79 105-126 (313)
16 3d0c_A Dihydrodipicolinate syn 31.4 17 0.00058 28.9 1.3 23 55-78 108-130 (314)
17 1o5k_A DHDPS, dihydrodipicolin 31.3 20 0.00068 28.3 1.7 22 56-78 110-131 (306)
18 1xky_A Dihydrodipicolinate syn 30.8 15 0.0005 29.1 0.9 23 55-78 109-131 (301)
19 2r91_A 2-keto-3-deoxy-(6-phosp 30.8 17 0.0006 28.3 1.3 24 55-79 92-116 (286)
20 3si9_A DHDPS, dihydrodipicolin 30.3 15 0.00051 29.3 0.9 24 55-79 119-142 (315)
21 3a5f_A Dihydrodipicolinate syn 30.3 12 0.00042 29.2 0.3 23 55-78 98-120 (291)
22 2v9d_A YAGE; dihydrodipicolini 29.8 22 0.00075 28.8 1.8 23 56-79 129-151 (343)
23 3e96_A Dihydrodipicolinate syn 29.8 27 0.00091 27.7 2.2 23 56-79 109-131 (316)
24 2r8w_A AGR_C_1641P; APC7498, d 29.3 27 0.00094 28.0 2.3 23 56-79 132-154 (332)
25 3m5v_A DHDPS, dihydrodipicolin 28.9 16 0.00056 28.7 0.9 23 56-79 106-128 (301)
26 3fkr_A L-2-keto-3-deoxyarabona 28.8 20 0.00067 28.5 1.3 25 55-79 105-131 (309)
27 3flu_A DHDPS, dihydrodipicolin 28.3 17 0.00058 28.5 0.9 23 55-78 104-126 (297)
28 3na8_A Putative dihydrodipicol 28.3 21 0.00071 28.4 1.4 24 55-79 121-144 (315)
29 3h5d_A DHDPS, dihydrodipicolin 27.9 25 0.00084 28.0 1.7 21 57-78 107-127 (311)
30 4dox_A Coat protein; all helix 27.5 42 0.0014 26.5 3.0 27 57-83 152-178 (226)
31 3qze_A DHDPS, dihydrodipicolin 26.5 19 0.00065 28.6 0.9 24 55-79 120-143 (314)
32 2jv2_A Putative uncharacterize 25.4 35 0.0012 22.7 1.9 29 70-99 26-54 (83)
33 2pcq_A Putative dihydrodipicol 24.7 24 0.00081 27.5 1.1 22 56-78 91-113 (283)
34 3nr5_A MAF1, repressor of RNA 23.3 21 0.00071 26.9 0.5 34 91-124 118-154 (164)
35 4dpp_A DHDPS 2, dihydrodipicol 23.2 22 0.00076 29.4 0.7 23 55-78 156-178 (360)
36 2hmc_A AGR_L_411P, dihydrodipi 21.7 46 0.0016 27.0 2.2 23 56-79 121-144 (344)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=99.96 E-value=1.9e-29 Score=194.48 Aligned_cols=70 Identities=56% Similarity=1.008 Sum_probs=64.6
Q ss_pred CCCCCCCCCCeeCCChHHHHHHHhhhhhcCCCCCCCcceeecCCCCCCCccccccCCCCCccEEEecccCC
Q 046437 55 EFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYFFTPRER 125 (125)
Q Consensus 55 ~~~~~LPpGFRF~PTDEELV~~YLr~Ki~G~plp~~~I~evDVY~~ePWdLp~~~~~~gd~eWYFFspR~R 125 (125)
...+.|||||||+|||||||.|||++|+.|.+++..+|+|+|||++|||+|++. +..++++|||||+|+|
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~-~~~g~~ewYFFs~r~~ 79 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPER-ALFGAREWYFFTPRDR 79 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGG-CSSCSSEEEEEEECCC
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhh-hccCCceEEEEecccc
Confidence 457899999999999999999999999999999999999999999999999988 4457889999999875
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=99.95 E-value=2e-29 Score=193.29 Aligned_cols=70 Identities=49% Similarity=0.901 Sum_probs=64.8
Q ss_pred CCCCCCCCCCeeCCChHHHHHHHhhhhhcCCCCCCCcceeecCCCCCCCccccccCCCCCccEEEecccCC
Q 046437 55 EFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYFFTPRER 125 (125)
Q Consensus 55 ~~~~~LPpGFRF~PTDEELV~~YLr~Ki~G~plp~~~I~evDVY~~ePWdLp~~~~~~gd~eWYFFspR~R 125 (125)
.....|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+|++. +..++++|||||+|+|
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~-~~~g~~ewyFFs~r~~ 81 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK-ALFGEKEWYFFSPRDR 81 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHH-SSSCSSEEEEEEECCC
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhch-hhcCCccEEEEecccc
Confidence 347899999999999999999999999999999999999999999999999998 4567899999999874
No 3
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=39.02 E-value=12 Score=29.35 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=17.2
Q ss_pred CCCCCCCCCCeeCCChHHHHHHHh
Q 046437 55 EFDDNFPPGYRFKPHDIELLVHYL 78 (125)
Q Consensus 55 ~~~~~LPpGFRF~PTDEELV~~YL 78 (125)
...+.+||-| |.||+++|+.||-
T Consensus 98 davlv~~P~y-~~~s~~~l~~~f~ 120 (292)
T 2ojp_A 98 VGCLTVTPYY-NRPSQEGLYQHFK 120 (292)
T ss_dssp SEEEEECCCS-SCCCHHHHHHHHH
T ss_pred CEEEECCCCC-CCCCHHHHHHHHH
Confidence 3345566655 8899999999884
No 4
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=36.72 E-value=15 Score=28.69 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=18.5
Q ss_pred CCCCCCCCCCCCeeC-CChHHHHHHHhh
Q 046437 53 GPEFDDNFPPGYRFK-PHDIELLVHYLR 79 (125)
Q Consensus 53 ~~~~~~~LPpGFRF~-PTDEELV~~YLr 79 (125)
+-...+.+||-| |. ||+++|+.||-.
T Consensus 91 Gadavlv~~P~y-~~~~s~~~l~~~f~~ 117 (288)
T 2nuw_A 91 DILGVSSHSPYY-FPRLPEKFLAKYYEE 117 (288)
T ss_dssp CCSEEEECCCCS-SCSCCHHHHHHHHHH
T ss_pred CCCEEEEcCCcC-CCCCCHHHHHHHHHH
Confidence 334455667755 78 999999999853
No 5
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=35.28 E-value=17 Score=24.04 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=22.9
Q ss_pred CCCCCeeCC-ChHHHHHHHhhhhhcCCCCC
Q 046437 60 FPPGYRFKP-HDIELLVHYLRRKRMNEPLP 88 (125)
Q Consensus 60 LPpGFRF~P-TDEELV~~YLr~Ki~G~plp 88 (125)
.|.|+.|.. |.+||- .||-.|+....+.
T Consensus 36 ~~~~~~~~~it~~eL~-~fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLE-GYLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHH-HHHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHH-HHHHHHHhCCeEE
Confidence 366899998 999995 5999999987753
No 6
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=34.98 E-value=11 Score=29.47 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=17.7
Q ss_pred CCCCCCCCCCeeCCChHHHHHHHhh
Q 046437 55 EFDDNFPPGYRFKPHDIELLVHYLR 79 (125)
Q Consensus 55 ~~~~~LPpGFRF~PTDEELV~~YLr 79 (125)
...+.+||-| |.||+++|+.||-.
T Consensus 97 davlv~~P~y-~~~s~~~l~~~f~~ 120 (294)
T 2ehh_A 97 DGALVVVPYY-NKPTQRGLYEHFKT 120 (294)
T ss_dssp SEEEEECCCS-SCCCHHHHHHHHHH
T ss_pred CEEEECCCCC-CCCCHHHHHHHHHH
Confidence 3455566654 88999999999853
No 7
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=34.36 E-value=17 Score=28.47 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=17.4
Q ss_pred CCCCCCCCCeeCCChHHHHHHHhh
Q 046437 56 FDDNFPPGYRFKPHDIELLVHYLR 79 (125)
Q Consensus 56 ~~~~LPpGFRF~PTDEELV~~YLr 79 (125)
..+.+||-| |.||+++|+.||-.
T Consensus 102 avlv~~P~y-~~~~~~~l~~~f~~ 124 (293)
T 1f6k_A 102 CLSAVTPFY-YKFSFPEIKHYYDT 124 (293)
T ss_dssp EEEEECCCS-SCCCHHHHHHHHHH
T ss_pred EEEECCCCC-CCCCHHHHHHHHHH
Confidence 355566755 89999999998853
No 8
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=34.31 E-value=12 Score=29.64 Aligned_cols=24 Identities=25% Similarity=0.123 Sum_probs=18.0
Q ss_pred CCCCCCCCCCeeCCChHHHHHHHhh
Q 046437 55 EFDDNFPPGYRFKPHDIELLVHYLR 79 (125)
Q Consensus 55 ~~~~~LPpGFRF~PTDEELV~~YLr 79 (125)
...+.+||- -|.||+++|+.||-.
T Consensus 113 davlv~~P~-y~~~~~~~l~~~f~~ 136 (304)
T 3cpr_A 113 DGLLVVTPY-YSKPSQEGLLAHFGA 136 (304)
T ss_dssp SEEEEECCC-SSCCCHHHHHHHHHH
T ss_pred CEEEECCCC-CCCCCHHHHHHHHHH
Confidence 345566774 488999999998843
No 9
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=33.30 E-value=17 Score=28.44 Aligned_cols=24 Identities=13% Similarity=0.197 Sum_probs=17.6
Q ss_pred CCCCCCCCCCeeC-CChHHHHHHHhh
Q 046437 55 EFDDNFPPGYRFK-PHDIELLVHYLR 79 (125)
Q Consensus 55 ~~~~~LPpGFRF~-PTDEELV~~YLr 79 (125)
...+.+||-| |. ||+++|+.||-.
T Consensus 93 davlv~~P~y-~~~~s~~~l~~~f~~ 117 (293)
T 1w3i_A 93 VGIASYAPYY-YPRMSEKHLVKYFKT 117 (293)
T ss_dssp SEEEEECCCS-CSSCCHHHHHHHHHH
T ss_pred CEEEEcCCCC-CCCCCHHHHHHHHHH
Confidence 3455566755 78 999999999843
No 10
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=33.19 E-value=18 Score=28.24 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=16.9
Q ss_pred CCCCCCCCCeeCCChHHHHHHHh
Q 046437 56 FDDNFPPGYRFKPHDIELLVHYL 78 (125)
Q Consensus 56 ~~~~LPpGFRF~PTDEELV~~YL 78 (125)
..+.+||-| |.||+++|+.||-
T Consensus 98 avlv~~P~y-~~~s~~~l~~~f~ 119 (289)
T 2yxg_A 98 AVLSITPYY-NKPTQEGLRKHFG 119 (289)
T ss_dssp EEEEECCCS-SCCCHHHHHHHHH
T ss_pred EEEECCCCC-CCCCHHHHHHHHH
Confidence 355567755 8899999999984
No 11
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=32.63 E-value=21 Score=28.04 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=17.7
Q ss_pred CCCCCCCCCCeeCCChHHHHHHHhh
Q 046437 55 EFDDNFPPGYRFKPHDIELLVHYLR 79 (125)
Q Consensus 55 ~~~~~LPpGFRF~PTDEELV~~YLr 79 (125)
...+.+||-| |.||+++|+.||-.
T Consensus 97 davlv~~P~y-~~~s~~~l~~~f~~ 120 (297)
T 2rfg_A 97 DAVLCVAGYY-NRPSQEGLYQHFKM 120 (297)
T ss_dssp SEEEECCCTT-TCCCHHHHHHHHHH
T ss_pred CEEEEcCCCC-CCCCHHHHHHHHHH
Confidence 3355667755 88999999998843
No 12
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=32.51 E-value=16 Score=28.64 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=17.6
Q ss_pred CCCCCCCCCCeeC-CChHHHHHHHhh
Q 046437 55 EFDDNFPPGYRFK-PHDIELLVHYLR 79 (125)
Q Consensus 55 ~~~~~LPpGFRF~-PTDEELV~~YLr 79 (125)
...+.+||-| |. ||+++|+.||-.
T Consensus 100 davlv~~P~y-~~~~s~~~l~~~f~~ 124 (294)
T 3b4u_A 100 RNILLAPPSY-FKNVSDDGLFAWFSA 124 (294)
T ss_dssp SEEEECCCCS-SCSCCHHHHHHHHHH
T ss_pred CEEEEcCCcC-CCCCCHHHHHHHHHH
Confidence 3455566655 78 999999998853
No 13
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=32.12 E-value=13 Score=29.00 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=17.8
Q ss_pred CCCCCCCCCCeeCCChHHHHHHHhh
Q 046437 55 EFDDNFPPGYRFKPHDIELLVHYLR 79 (125)
Q Consensus 55 ~~~~~LPpGFRF~PTDEELV~~YLr 79 (125)
...+.+||- -|.||+++|+.||-.
T Consensus 97 davlv~~P~-y~~~s~~~l~~~f~~ 120 (292)
T 2vc6_A 97 DGVLIVSPY-YNKPTQEGIYQHFKA 120 (292)
T ss_dssp SEEEEECCC-SSCCCHHHHHHHHHH
T ss_pred CEEEEcCCC-CCCCCHHHHHHHHHH
Confidence 345556774 489999999999843
No 14
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=31.96 E-value=19 Score=28.37 Aligned_cols=23 Identities=22% Similarity=0.103 Sum_probs=17.4
Q ss_pred CCCCCCCCCeeCCChHHHHHHHhh
Q 046437 56 FDDNFPPGYRFKPHDIELLVHYLR 79 (125)
Q Consensus 56 ~~~~LPpGFRF~PTDEELV~~YLr 79 (125)
..+.+||-| |.||+++|+.||-.
T Consensus 109 avlv~~P~y-~~~s~~~l~~~f~~ 131 (303)
T 2wkj_A 109 AVSAVTPFY-YPFSFEEHCDHYRA 131 (303)
T ss_dssp EEEEECCCS-SCCCHHHHHHHHHH
T ss_pred EEEecCCCC-CCCCHHHHHHHHHH
Confidence 355566755 88999999998853
No 15
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=31.66 E-value=22 Score=28.21 Aligned_cols=22 Identities=14% Similarity=-0.017 Sum_probs=16.4
Q ss_pred CCCCCCCCCeeCCChHHHHHHHhh
Q 046437 56 FDDNFPPGYRFKPHDIELLVHYLR 79 (125)
Q Consensus 56 ~~~~LPpGFRF~PTDEELV~~YLr 79 (125)
..+.+||- |.||+++|+.||-.
T Consensus 105 avlv~~P~--~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 105 GVMIAPPP--SLRTDEQITTYFRQ 126 (313)
T ss_dssp EEEECCCT--TCCSHHHHHHHHHH
T ss_pred EEEECCCC--CCCCHHHHHHHHHH
Confidence 35567774 56999999998854
No 16
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=31.40 E-value=17 Score=28.90 Aligned_cols=23 Identities=13% Similarity=-0.122 Sum_probs=17.3
Q ss_pred CCCCCCCCCCeeCCChHHHHHHHh
Q 046437 55 EFDDNFPPGYRFKPHDIELLVHYL 78 (125)
Q Consensus 55 ~~~~~LPpGFRF~PTDEELV~~YL 78 (125)
...+.+||-| |.||+++|+.||-
T Consensus 108 davlv~~P~y-~~~s~~~l~~~f~ 130 (314)
T 3d0c_A 108 DCVMIHQPVH-PYITDAGAVEYYR 130 (314)
T ss_dssp SEEEECCCCC-SCCCHHHHHHHHH
T ss_pred CEEEECCCCC-CCCCHHHHHHHHH
Confidence 3455566654 8999999999884
No 17
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=31.32 E-value=20 Score=28.32 Aligned_cols=22 Identities=32% Similarity=0.249 Sum_probs=16.9
Q ss_pred CCCCCCCCCeeCCChHHHHHHHh
Q 046437 56 FDDNFPPGYRFKPHDIELLVHYL 78 (125)
Q Consensus 56 ~~~~LPpGFRF~PTDEELV~~YL 78 (125)
..+.+||-| |.||+++|+.||-
T Consensus 110 avlv~~P~y-~~~s~~~l~~~f~ 131 (306)
T 1o5k_A 110 GVLVVTPYY-NKPTQEGLYQHYK 131 (306)
T ss_dssp EEEEECCCS-SCCCHHHHHHHHH
T ss_pred EEEECCCCC-CCCCHHHHHHHHH
Confidence 355567755 8899999999884
No 18
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=30.83 E-value=15 Score=29.06 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=17.2
Q ss_pred CCCCCCCCCCeeCCChHHHHHHHh
Q 046437 55 EFDDNFPPGYRFKPHDIELLVHYL 78 (125)
Q Consensus 55 ~~~~~LPpGFRF~PTDEELV~~YL 78 (125)
...+.+||- -|.||+++|+.||-
T Consensus 109 davlv~~P~-y~~~s~~~l~~~f~ 131 (301)
T 1xky_A 109 DAVMLVAPY-YNKPSQEGMYQHFK 131 (301)
T ss_dssp SEEEEECCC-SSCCCHHHHHHHHH
T ss_pred CEEEEcCCC-CCCCCHHHHHHHHH
Confidence 345556774 48899999999884
No 19
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=30.83 E-value=17 Score=28.26 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=17.8
Q ss_pred CCCCCCCCCCeeC-CChHHHHHHHhh
Q 046437 55 EFDDNFPPGYRFK-PHDIELLVHYLR 79 (125)
Q Consensus 55 ~~~~~LPpGFRF~-PTDEELV~~YLr 79 (125)
...+.+||-| |. ||+++|+.||-.
T Consensus 92 davlv~~P~y-~~~~s~~~l~~~f~~ 116 (286)
T 2r91_A 92 EAVASLPPYY-FPRLSERQIAKYFRD 116 (286)
T ss_dssp SEEEECCSCS-STTCCHHHHHHHHHH
T ss_pred CEEEEcCCcC-CCCCCHHHHHHHHHH
Confidence 3455667755 78 999999998853
No 20
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=30.27 E-value=15 Score=29.34 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=17.8
Q ss_pred CCCCCCCCCCeeCCChHHHHHHHhh
Q 046437 55 EFDDNFPPGYRFKPHDIELLVHYLR 79 (125)
Q Consensus 55 ~~~~~LPpGFRF~PTDEELV~~YLr 79 (125)
...+.+||-| |.||+++|+.||-.
T Consensus 119 davlv~~P~y-~~~~~~~l~~~f~~ 142 (315)
T 3si9_A 119 DAVLVVTPYY-NRPNQRGLYTHFSS 142 (315)
T ss_dssp SEEEEECCCS-SCCCHHHHHHHHHH
T ss_pred CEEEECCCCC-CCCCHHHHHHHHHH
Confidence 3455667755 88999999998843
No 21
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=30.26 E-value=12 Score=29.22 Aligned_cols=23 Identities=22% Similarity=0.158 Sum_probs=16.8
Q ss_pred CCCCCCCCCCeeCCChHHHHHHHh
Q 046437 55 EFDDNFPPGYRFKPHDIELLVHYL 78 (125)
Q Consensus 55 ~~~~~LPpGFRF~PTDEELV~~YL 78 (125)
...+.+||-| |.||+++|+.||-
T Consensus 98 davlv~~P~y-~~~s~~~l~~~f~ 120 (291)
T 3a5f_A 98 DGLLVITPYY-NKTTQKGLVKHFK 120 (291)
T ss_dssp SEEEEECCCS-SCCCHHHHHHHC-
T ss_pred CEEEEcCCCC-CCCCHHHHHHHHH
Confidence 3455566754 8899999999884
No 22
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=29.81 E-value=22 Score=28.77 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=17.3
Q ss_pred CCCCCCCCCeeCCChHHHHHHHhh
Q 046437 56 FDDNFPPGYRFKPHDIELLVHYLR 79 (125)
Q Consensus 56 ~~~~LPpGFRF~PTDEELV~~YLr 79 (125)
..+.+||-| |.||+++|+.||-.
T Consensus 129 avlv~~P~Y-~~~s~~~l~~~f~~ 151 (343)
T 2v9d_A 129 GIVVINPYY-WKVSEANLIRYFEQ 151 (343)
T ss_dssp EEEEECCSS-SCCCHHHHHHHHHH
T ss_pred EEEECCCCC-CCCCHHHHHHHHHH
Confidence 355567755 88999999998853
No 23
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=29.80 E-value=27 Score=27.72 Aligned_cols=23 Identities=4% Similarity=-0.343 Sum_probs=17.6
Q ss_pred CCCCCCCCCeeCCChHHHHHHHhh
Q 046437 56 FDDNFPPGYRFKPHDIELLVHYLR 79 (125)
Q Consensus 56 ~~~~LPpGFRF~PTDEELV~~YLr 79 (125)
..+.+||-| +.||+++|+.||-.
T Consensus 109 avlv~~P~y-~~~s~~~l~~~f~~ 131 (316)
T 3e96_A 109 AVMIHMPIH-PYVTAGGVYAYFRD 131 (316)
T ss_dssp EEEECCCCC-SCCCHHHHHHHHHH
T ss_pred EEEEcCCCC-CCCCHHHHHHHHHH
Confidence 355667766 89999999998853
No 24
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=29.30 E-value=27 Score=28.00 Aligned_cols=23 Identities=17% Similarity=0.015 Sum_probs=17.4
Q ss_pred CCCCCCCCCeeCCChHHHHHHHhh
Q 046437 56 FDDNFPPGYRFKPHDIELLVHYLR 79 (125)
Q Consensus 56 ~~~~LPpGFRF~PTDEELV~~YLr 79 (125)
..+.+||-| |.||+++|+.||-.
T Consensus 132 avlv~~P~Y-~~~s~~~l~~~f~~ 154 (332)
T 2r8w_A 132 ALLLAPVSY-TPLTQEEAYHHFAA 154 (332)
T ss_dssp EEEECCCCS-SCCCHHHHHHHHHH
T ss_pred EEEECCCCC-CCCCHHHHHHHHHH
Confidence 355667755 88999999998843
No 25
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=28.90 E-value=16 Score=28.68 Aligned_cols=23 Identities=26% Similarity=0.131 Sum_probs=16.7
Q ss_pred CCCCCCCCCeeCCChHHHHHHHhh
Q 046437 56 FDDNFPPGYRFKPHDIELLVHYLR 79 (125)
Q Consensus 56 ~~~~LPpGFRF~PTDEELV~~YLr 79 (125)
..+.+||- .|.||+++|+.||-.
T Consensus 106 avlv~~P~-y~~~s~~~l~~~f~~ 128 (301)
T 3m5v_A 106 GILSVAPY-YNKPTQQGLYEHYKA 128 (301)
T ss_dssp EEEEECCC-SSCCCHHHHHHHHHH
T ss_pred EEEEcCCC-CCCCCHHHHHHHHHH
Confidence 34555564 478999999998843
No 26
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=28.75 E-value=20 Score=28.47 Aligned_cols=25 Identities=20% Similarity=0.394 Sum_probs=18.6
Q ss_pred CCCCCCCCCCe--eCCChHHHHHHHhh
Q 046437 55 EFDDNFPPGYR--FKPHDIELLVHYLR 79 (125)
Q Consensus 55 ~~~~~LPpGFR--F~PTDEELV~~YLr 79 (125)
...+.+||-|- |.||+++|+.||-.
T Consensus 105 davlv~~Pyy~~~~~~s~~~l~~~f~~ 131 (309)
T 3fkr_A 105 AMVMAMPPYHGATFRVPEAQIFEFYAR 131 (309)
T ss_dssp SEEEECCSCBTTTBCCCHHHHHHHHHH
T ss_pred CEEEEcCCCCccCCCCCHHHHHHHHHH
Confidence 44566777542 89999999998854
No 27
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=28.34 E-value=17 Score=28.54 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=16.7
Q ss_pred CCCCCCCCCCeeCCChHHHHHHHh
Q 046437 55 EFDDNFPPGYRFKPHDIELLVHYL 78 (125)
Q Consensus 55 ~~~~~LPpGFRF~PTDEELV~~YL 78 (125)
...+.+||- .|.||+++|+.||-
T Consensus 104 davlv~~P~-y~~~~~~~l~~~f~ 126 (297)
T 3flu_A 104 DYTLSVVPY-YNKPSQEGIYQHFK 126 (297)
T ss_dssp SEEEEECCC-SSCCCHHHHHHHHH
T ss_pred CEEEECCCC-CCCCCHHHHHHHHH
Confidence 334556664 47899999999884
No 28
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=28.29 E-value=21 Score=28.44 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=17.3
Q ss_pred CCCCCCCCCCeeCCChHHHHHHHhh
Q 046437 55 EFDDNFPPGYRFKPHDIELLVHYLR 79 (125)
Q Consensus 55 ~~~~~LPpGFRF~PTDEELV~~YLr 79 (125)
...+.+||-| |.||+++|+.||-.
T Consensus 121 davlv~~P~y-~~~s~~~l~~~f~~ 144 (315)
T 3na8_A 121 EAVMVLPISY-WKLNEAEVFQHYRA 144 (315)
T ss_dssp SEEEECCCCS-SCCCHHHHHHHHHH
T ss_pred CEEEECCCCC-CCCCHHHHHHHHHH
Confidence 3355566644 78999999998853
No 29
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=27.95 E-value=25 Score=27.96 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=15.9
Q ss_pred CCCCCCCCeeCCChHHHHHHHh
Q 046437 57 DDNFPPGYRFKPHDIELLVHYL 78 (125)
Q Consensus 57 ~~~LPpGFRF~PTDEELV~~YL 78 (125)
.+.+||- .|.||+++|+.||-
T Consensus 107 vlv~~P~-y~~~s~~~l~~~f~ 127 (311)
T 3h5d_A 107 GLAIVPY-YNKPSQEGMYQHFK 127 (311)
T ss_dssp EEEECCC-SSCCCHHHHHHHHH
T ss_pred EEEcCCC-CCCCCHHHHHHHHH
Confidence 4555664 48899999999884
No 30
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=27.51 E-value=42 Score=26.55 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=18.4
Q ss_pred CCCCCCCCeeCCChHHHHHHHhhhhhc
Q 046437 57 DDNFPPGYRFKPHDIELLVHYLRRKRM 83 (125)
Q Consensus 57 ~~~LPpGFRF~PTDEELV~~YLr~Ki~ 83 (125)
.+.-+-|..+.||++|+|.|=..+++.
T Consensus 152 Al~P~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 152 AMQPPSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp SCCCTTCCSSCCCHHHHHHHHTC----
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 344445899999999999987766543
No 31
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=26.55 E-value=19 Score=28.65 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=17.3
Q ss_pred CCCCCCCCCCeeCCChHHHHHHHhh
Q 046437 55 EFDDNFPPGYRFKPHDIELLVHYLR 79 (125)
Q Consensus 55 ~~~~~LPpGFRF~PTDEELV~~YLr 79 (125)
...+.+||-| |.||+++|+.||-.
T Consensus 120 davlv~~P~y-~~~s~~~l~~~f~~ 143 (314)
T 3qze_A 120 DACLLVTPYY-NKPTQEGMYQHFRH 143 (314)
T ss_dssp SEEEEECCCS-SCCCHHHHHHHHHH
T ss_pred CEEEEcCCCC-CCCCHHHHHHHHHH
Confidence 3355566644 79999999998854
No 32
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=25.35 E-value=35 Score=22.70 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=19.8
Q ss_pred hHHHHHHHhhhhhcCCCCCCCcceeecCCC
Q 046437 70 DIELLVHYLRRKRMNEPLPPNRIKEVHLYK 99 (125)
Q Consensus 70 DEELV~~YLr~Ki~G~plp~~~I~evDVY~ 99 (125)
+..+ ..||++++.|+|+...-+..+.+++
T Consensus 26 ~~~~-~~~lk~~L~grPV~~GD~I~i~~~G 54 (83)
T 2jv2_A 26 PPDF-VDVIRIKLQGKTVRTGDVIGISILG 54 (83)
T ss_dssp CHHH-HHHHHHHHTTSEECTTCEEEEEETT
T ss_pred CccH-HHHHHHHHCCCCccCCCEEEEeeCC
Confidence 3444 5799999999998654333366554
No 33
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=24.74 E-value=24 Score=27.52 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=16.9
Q ss_pred CCCCCCCCCeeCC-ChHHHHHHHh
Q 046437 56 FDDNFPPGYRFKP-HDIELLVHYL 78 (125)
Q Consensus 56 ~~~~LPpGFRF~P-TDEELV~~YL 78 (125)
..+.+||-| |.| |+++|+.||-
T Consensus 91 avlv~~P~y-~~~~~~~~l~~~f~ 113 (283)
T 2pcq_A 91 ALLATPPRY-YHGSLGAGLLRYYE 113 (283)
T ss_dssp EEEECCCCT-TGGGTTTHHHHHHH
T ss_pred EEEecCCcC-CCCCCHHHHHHHHH
Confidence 355667755 889 9999999884
No 34
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=23.31 E-value=21 Score=26.95 Aligned_cols=34 Identities=24% Similarity=0.575 Sum_probs=19.9
Q ss_pred cceeecCCCCCCCccccccC---CCCCccEEEecccC
Q 046437 91 RIKEVHLYKFNPDTLSEKYK---PFGENEWYFFTPRE 124 (125)
Q Consensus 91 ~I~evDVY~~ePWdLp~~~~---~~gd~eWYFFspR~ 124 (125)
-+.+||||++.|..-..-+. ..=.-.||||.++.
T Consensus 118 ~l~dC~IYsY~Pd~~~DPf~e~g~lWSfnYFFyNKkl 154 (164)
T 3nr5_A 118 CLAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRL 154 (164)
T ss_dssp CGGGCEEEEECCCGGGCTTCSCCCSCEEEEEEEETTT
T ss_pred CccCCeEEEEcCCCCCCCCCCCCceeeeeeeEEecCc
Confidence 47889999999983322221 11113477777654
No 35
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=23.22 E-value=22 Score=29.41 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=18.0
Q ss_pred CCCCCCCCCCeeCCChHHHHHHHh
Q 046437 55 EFDDNFPPGYRFKPHDIELLVHYL 78 (125)
Q Consensus 55 ~~~~~LPpGFRF~PTDEELV~~YL 78 (125)
...+.+|| |-+.||+++|+.||-
T Consensus 156 davlvv~P-yY~k~sq~gl~~hf~ 178 (360)
T 4dpp_A 156 HAALHINP-YYGKTSIEGLIAHFQ 178 (360)
T ss_dssp SEEEEECC-CSSCCCHHHHHHHHH
T ss_pred CEEEEcCC-CCCCCCHHHHHHHHH
Confidence 34566777 558999999999884
No 36
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=21.74 E-value=46 Score=26.96 Aligned_cols=23 Identities=9% Similarity=-0.164 Sum_probs=17.0
Q ss_pred CCCCCCCCCeeC-CChHHHHHHHhh
Q 046437 56 FDDNFPPGYRFK-PHDIELLVHYLR 79 (125)
Q Consensus 56 ~~~~LPpGFRF~-PTDEELV~~YLr 79 (125)
..+.+||-| |. ||+++|+.||-.
T Consensus 121 avlv~~P~y-~~~~s~~~l~~~f~~ 144 (344)
T 2hmc_A 121 GLMVIPRVL-SRGSVIAAQKAHFKA 144 (344)
T ss_dssp EEEECCCCS-SSTTCHHHHHHHHHH
T ss_pred EEEECCCcc-CCCCCHHHHHHHHHH
Confidence 355566654 78 999999998853
Done!