BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046439
(269 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224095662|ref|XP_002310428.1| predicted protein [Populus trichocarpa]
gi|222853331|gb|EEE90878.1| predicted protein [Populus trichocarpa]
Length = 269
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/269 (89%), Positives = 258/269 (95%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
MGRPLFYEI+EKPATSCIIGICS IWFYIQK+N GYSHVGLSYE A++GHHWRIITSAFS
Sbjct: 1 MGRPLFYEIVEKPATSCIIGICSAIWFYIQKRNFGYSHVGLSYENAIEGHHWRIITSAFS 60
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
HISV+HLVFNMSALWSLGVVEQLG +GLG AYYL +TLVLVVLSG LVLG+YHLLIQRFK
Sbjct: 61 HISVIHLVFNMSALWSLGVVEQLGHIGLGVAYYLHHTLVLVVLSGALVLGMYHLLIQRFK 120
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
+EYFR VTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 IEYFRSVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
SFLGHLSGI+VGYAIAWGLIHGMNNYWA+SMLGWIVLVFV SLKRSG YDF+FLEIESVT
Sbjct: 181 SFLGHLSGIVVGYAIAWGLIHGMNNYWAISMLGWIVLVFVVSLKRSGAYDFDFLEIESVT 240
Query: 241 DPSLPSVRFIGNGRTLQMSAIPVEGVEIV 269
DPSLPSVRF+G+GRTLQ S++PVEGVEIV
Sbjct: 241 DPSLPSVRFLGSGRTLQESSLPVEGVEIV 269
>gi|449454580|ref|XP_004145032.1| PREDICTED: rhomboid protein 2-like [Cucumis sativus]
gi|449471895|ref|XP_004153438.1| PREDICTED: rhomboid protein 2-like [Cucumis sativus]
gi|449520980|ref|XP_004167510.1| PREDICTED: LOW QUALITY PROTEIN: rhomboid protein 2-like [Cucumis
sativus]
Length = 271
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/271 (87%), Positives = 257/271 (94%), Gaps = 2/271 (0%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
MGRPLFYEI+EKPATS IIGIC IWFYIQKKNIGYSHVGLSYETAV+GHHWRIITSAFS
Sbjct: 1 MGRPLFYEILEKPATSGIIGICCAIWFYIQKKNIGYSHVGLSYETAVEGHHWRIITSAFS 60
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
HISV+HLVFNMSALWSLG VEQLG +GLG YYL YTLVLV+LSG+LVLG+YHLLIQ+FK
Sbjct: 61 HISVIHLVFNMSALWSLGAVEQLGHIGLGVPYYLHYTLVLVILSGVLVLGMYHLLIQKFK 120
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
LEYFRRVTAVGYSCVVFGWMTILSV+QPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 LEYFRRVTAVGYSCVVFGWMTILSVRQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
SFLGHLSGIIVGYAIAWGLIHGMNN+WA+SMLGW+VLVF++SLK+S TY+F+FLEIESVT
Sbjct: 181 SFLGHLSGIIVGYAIAWGLIHGMNNFWAISMLGWVVLVFIFSLKKSNTYNFDFLEIESVT 240
Query: 241 DPSLPSVRFI--GNGRTLQMSAIPVEGVEIV 269
DPSLPSVRF+ GNGRTLQM+A+P VEIV
Sbjct: 241 DPSLPSVRFLSSGNGRTLQMNALPTGDVEIV 271
>gi|307136259|gb|ADN34087.1| rhomboid protein [Cucumis melo subsp. melo]
Length = 271
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/271 (87%), Positives = 257/271 (94%), Gaps = 2/271 (0%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
MGRPLFYEI+EKPATS IIGIC IWFYIQKKNIGYSHVGLSYETA++GHHWRIITSAFS
Sbjct: 1 MGRPLFYEILEKPATSGIIGICCAIWFYIQKKNIGYSHVGLSYETAMEGHHWRIITSAFS 60
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
HISV+HLVFNMSALWSLG VEQLG +GLG YYL YTLVLV+LSG+LVLG+YHLLIQ+FK
Sbjct: 61 HISVIHLVFNMSALWSLGAVEQLGHIGLGVPYYLHYTLVLVILSGVLVLGMYHLLIQKFK 120
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
LEYFRRVTAVGYSCVVFGWMTILSV+QPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 LEYFRRVTAVGYSCVVFGWMTILSVRQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
SFLGHLSGIIVGYAIAWGLIHGMNN+WA+SMLGW+VLVF++SLK+S TY+F+FLEIESVT
Sbjct: 181 SFLGHLSGIIVGYAIAWGLIHGMNNFWAISMLGWVVLVFIFSLKKSNTYNFDFLEIESVT 240
Query: 241 DPSLPSVRFI--GNGRTLQMSAIPVEGVEIV 269
DPSLPSVRF+ GNGRTLQM+A+P VEIV
Sbjct: 241 DPSLPSVRFLSSGNGRTLQMNALPTGDVEIV 271
>gi|225433926|ref|XP_002268743.1| PREDICTED: uncharacterized protein LOC100252469 [Vitis vinifera]
gi|147779771|emb|CAN67998.1| hypothetical protein VITISV_001298 [Vitis vinifera]
gi|297743810|emb|CBI36693.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/271 (87%), Positives = 256/271 (94%), Gaps = 2/271 (0%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
MG+PLFYEI+EKPATSCIIG+C IWFYIQKKNIGYSHVGLSYETA++GHHWRIITSA S
Sbjct: 1 MGKPLFYEILEKPATSCIIGLCCAIWFYIQKKNIGYSHVGLSYETAIEGHHWRIITSALS 60
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
HISV+HLVFNMSALWSLGVVEQLG +G+G +YLQYTLVLVVLSG LVLG YH+LIQRFK
Sbjct: 61 HISVIHLVFNMSALWSLGVVEQLGHMGMGVEFYLQYTLVLVVLSGGLVLGSYHVLIQRFK 120
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKL+LFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLELFGFLSLPISFAPFESLIFTSIIVPQA 180
Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
SFLGHLSGIIVGYAIAWG+IHGM NYWA+SMLGWIVLVFV+SLKRSG YDF+FLEIE VT
Sbjct: 181 SFLGHLSGIIVGYAIAWGVIHGMTNYWAVSMLGWIVLVFVFSLKRSGAYDFSFLEIEPVT 240
Query: 241 DPSLPSVRFI--GNGRTLQMSAIPVEGVEIV 269
DPSLPSVRF+ GNGRTLQMSA+PV G ++V
Sbjct: 241 DPSLPSVRFLASGNGRTLQMSALPVGGSDLV 271
>gi|297817250|ref|XP_002876508.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297322346|gb|EFH52767.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 269
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/269 (85%), Positives = 255/269 (94%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
MGRPLFY+I+EKPATSCI+ ICSVIWF IQKK+IGYS VGLSYETA++GH+WR+ITSA S
Sbjct: 1 MGRPLFYDIIEKPATSCIVTICSVIWFVIQKKSIGYSQVGLSYETAIEGHYWRMITSALS 60
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
HISVLHLVFNMSALWSLGVVEQLG VGLGTAYYL YTLVLVV SG+LV+GIYHLLI RFK
Sbjct: 61 HISVLHLVFNMSALWSLGVVEQLGHVGLGTAYYLHYTLVLVVFSGVLVIGIYHLLIARFK 120
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
++YFRRVTAVGYSCVVFGWMTILS+KQPSSKLDLFG LSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 IDYFRRVTAVGYSCVVFGWMTILSMKQPSSKLDLFGLLSLPISFAPFESLIFTSIIVPQA 180
Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
SFLGHLSGI+VGYAI+WGLI GMNNYWAL+MLGWIV+VFV+SLK+SG YDF+FLEIES+T
Sbjct: 181 SFLGHLSGILVGYAISWGLIGGMNNYWALTMLGWIVVVFVFSLKKSGAYDFSFLEIESLT 240
Query: 241 DPSLPSVRFIGNGRTLQMSAIPVEGVEIV 269
D SLPSVRFIGNGRTLQ SA+P+ GVE+V
Sbjct: 241 DASLPSVRFIGNGRTLQASAVPLSGVEVV 269
>gi|388521227|gb|AFK48675.1| unknown [Lotus japonicus]
Length = 271
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 234/271 (86%), Positives = 254/271 (93%), Gaps = 2/271 (0%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
MG+PLFYEI+EKPATS +IGICSVIWFYIQKKNIGYSHVGLSYETA++G HWRIITSAFS
Sbjct: 1 MGKPLFYEILEKPATSVLIGICSVIWFYIQKKNIGYSHVGLSYETAIEGQHWRIITSAFS 60
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
HISV+HLVFNMSALWSLGVVEQL +GLG YYLQYTLVLV+LSG+LVL +YHLLIQRFK
Sbjct: 61 HISVIHLVFNMSALWSLGVVEQLDHLGLGVEYYLQYTLVLVILSGVLVLAMYHLLIQRFK 120
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
+EYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 IEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
SFLGHLSGI+VGY IAWGLIHGM+NYWALS+LGWIVLVFV SLKRSG + NFLEIESVT
Sbjct: 181 SFLGHLSGIVVGYTIAWGLIHGMSNYWALSLLGWIVLVFVLSLKRSGVLELNFLEIESVT 240
Query: 241 DPSLPSVRFI--GNGRTLQMSAIPVEGVEIV 269
DPSLPSVRF+ GNGRTLQMSA+P +++V
Sbjct: 241 DPSLPSVRFLASGNGRTLQMSALPDGNIDLV 271
>gi|15231701|ref|NP_191511.1| RHOMBOID-like protein 13 [Arabidopsis thaliana]
gi|6996288|emb|CAB75449.1| putative protein [Arabidopsis thaliana]
gi|332646414|gb|AEE79935.1| RHOMBOID-like protein 13 [Arabidopsis thaliana]
Length = 269
Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/269 (85%), Positives = 255/269 (94%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
MGRPLFY+I+EKPATSCI+ +CSVIWF IQKK+IGYS VGLSYETA++GH+WR+ITSA S
Sbjct: 1 MGRPLFYDIIEKPATSCIVTLCSVIWFVIQKKSIGYSQVGLSYETAIEGHYWRMITSALS 60
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
HISVLHLVFNMSALWSLGVVEQLG VGLGTAYYL YTLVLVV SG+LV+GIYHLLI RFK
Sbjct: 61 HISVLHLVFNMSALWSLGVVEQLGHVGLGTAYYLHYTLVLVVFSGVLVIGIYHLLIARFK 120
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
++YFRRVTAVGYSCVVFGWMTILSVKQPSSKL+LFG LSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 IDYFRRVTAVGYSCVVFGWMTILSVKQPSSKLNLFGLLSLPISFAPFESLIFTSIIVPQA 180
Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
SFLGHLSGI+VGYAI+WGLI GMNNYWAL+MLGWIV+VFV+SLK+SG YDF+FLEIES+T
Sbjct: 181 SFLGHLSGILVGYAISWGLIGGMNNYWALTMLGWIVVVFVFSLKKSGAYDFSFLEIESLT 240
Query: 241 DPSLPSVRFIGNGRTLQMSAIPVEGVEIV 269
D SLPSVRFIGNGRTLQ SA+P+ GVE+V
Sbjct: 241 DASLPSVRFIGNGRTLQASAVPLSGVEVV 269
>gi|255577227|ref|XP_002529496.1| Rhomboid protein, putative [Ricinus communis]
gi|223531054|gb|EEF32906.1| Rhomboid protein, putative [Ricinus communis]
Length = 269
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/269 (89%), Positives = 262/269 (97%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
MG+PLFYEI+EKPATSCIIGICS IWFYIQKKNIGYSHVGLSYETA++GHHWRIITSAFS
Sbjct: 1 MGKPLFYEILEKPATSCIIGICSAIWFYIQKKNIGYSHVGLSYETAIEGHHWRIITSAFS 60
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
HISVLHLVFNMSALWSLGVVEQLG +GLG AYYL YTLVLVVLSG+LVLG+Y +LIQRFK
Sbjct: 61 HISVLHLVFNMSALWSLGVVEQLGHMGLGIAYYLHYTLVLVVLSGVLVLGMYRILIQRFK 120
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
++YFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 VDYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
SFLGHLSGIIVGY+IAWGLIHGMNN+WA+SMLGWIV++F++SLKRSG YDF+FLEIESVT
Sbjct: 181 SFLGHLSGIIVGYSIAWGLIHGMNNFWAISMLGWIVVIFMFSLKRSGAYDFSFLEIESVT 240
Query: 241 DPSLPSVRFIGNGRTLQMSAIPVEGVEIV 269
D SLPSVRF+GNGRTLQMSA+P+EGVE+V
Sbjct: 241 DASLPSVRFLGNGRTLQMSALPLEGVEVV 269
>gi|356545465|ref|XP_003541163.1| PREDICTED: rhomboid protein 2-like [Glycine max]
Length = 271
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 242/271 (89%), Positives = 256/271 (94%), Gaps = 2/271 (0%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
MG+PLFYEI+EKPATSCIIGICS+IWFYIQKKNIGYSHVGLSYETAV+GHHWRIITSAFS
Sbjct: 1 MGKPLFYEILEKPATSCIIGICSMIWFYIQKKNIGYSHVGLSYETAVEGHHWRIITSAFS 60
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
HISV+HLVFNMSALWSLGVVEQLG +GLG YYLQYTLVLVVLSG+LVL +YHLLIQRFK
Sbjct: 61 HISVIHLVFNMSALWSLGVVEQLGHLGLGVEYYLQYTLVLVVLSGVLVLAMYHLLIQRFK 120
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
SFLGHLSGI+VGYAIAWGLIHGM+NYWALS+LGWI LVFV SLKRSG D NFLEIESVT
Sbjct: 181 SFLGHLSGIVVGYAIAWGLIHGMSNYWALSLLGWIALVFVLSLKRSGAVDLNFLEIESVT 240
Query: 241 DPSLPSVRFIG--NGRTLQMSAIPVEGVEIV 269
DPSLPSVRF+ +GRTLQMSA+P VEIV
Sbjct: 241 DPSLPSVRFLASNSGRTLQMSALPNGNVEIV 271
>gi|356538887|ref|XP_003537932.1| PREDICTED: rhomboid protein 2-like [Glycine max]
Length = 271
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/271 (88%), Positives = 256/271 (94%), Gaps = 2/271 (0%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
MG+PLFYEI+EKPATSCIIGICS+IWFYIQKKNIGYSHVGLSYETA++GHHWRIITSAFS
Sbjct: 1 MGKPLFYEILEKPATSCIIGICSMIWFYIQKKNIGYSHVGLSYETALEGHHWRIITSAFS 60
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
HISV+HLVFNMSALWSLGVVEQLG +GLG YYLQYTLVLVVLSG+LVL +YHLLI+RFK
Sbjct: 61 HISVIHLVFNMSALWSLGVVEQLGHLGLGVEYYLQYTLVLVVLSGVLVLAMYHLLIERFK 120
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
SFLGHLSGI+VGYAIAWGLIHGM+NYWALS+LGWI LVFV SLKRSG D NFLEIESVT
Sbjct: 181 SFLGHLSGIVVGYAIAWGLIHGMSNYWALSLLGWIALVFVLSLKRSGAVDLNFLEIESVT 240
Query: 241 DPSLPSVRFIG--NGRTLQMSAIPVEGVEIV 269
DPSLPSVRF+ +GRTLQMSA+P VEIV
Sbjct: 241 DPSLPSVRFLASNSGRTLQMSALPNGNVEIV 271
>gi|255634698|gb|ACU17711.1| unknown [Glycine max]
Length = 271
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 239/271 (88%), Positives = 256/271 (94%), Gaps = 2/271 (0%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
MG+PLFYEI+EKPATSCIIGICS+IWFYIQKKNIGYSHVGLSYETA++GHHWRIITSAFS
Sbjct: 1 MGKPLFYEILEKPATSCIIGICSMIWFYIQKKNIGYSHVGLSYETALEGHHWRIITSAFS 60
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
HISV+HLVFNMSALWSLGVVEQLG +GLG YYLQYTLVLVVLSG+LVL +YHLLI+RFK
Sbjct: 61 HISVIHLVFNMSALWSLGVVEQLGHLGLGVEYYLQYTLVLVVLSGVLVLAMYHLLIERFK 120
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA
Sbjct: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVT 240
SFLGHLSGI+VGYAIAWGLIHGM+NYWALS+LGWI LVF+ SLKRSG D NFLEIESVT
Sbjct: 181 SFLGHLSGIVVGYAIAWGLIHGMSNYWALSLLGWIALVFILSLKRSGAVDLNFLEIESVT 240
Query: 241 DPSLPSVRFIG--NGRTLQMSAIPVEGVEIV 269
DPSLPSVRF+ +GRTLQMSA+P VEIV
Sbjct: 241 DPSLPSVRFLASNSGRTLQMSALPNGNVEIV 271
>gi|125528698|gb|EAY76812.1| hypothetical protein OsI_04771 [Oryza sativa Indica Group]
Length = 273
Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/269 (78%), Positives = 240/269 (89%), Gaps = 3/269 (1%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDG-HHWRIITSAF 59
MG+PL YEI+EKPA+S +IGICS+IWF+IQK+NIGY VGLSYE A++G +WRIITSAF
Sbjct: 1 MGKPLIYEILEKPASSSVIGICSLIWFFIQKRNIGYGDVGLSYEAAMEGGQYWRIITSAF 60
Query: 60 SHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
SHISV+HLVFNMSALWSLGVVEQLG +GLG YYL YTLVLVVLSGLLVLG YH++IQ+F
Sbjct: 61 SHISVVHLVFNMSALWSLGVVEQLGQIGLGVEYYLHYTLVLVVLSGLLVLGFYHVMIQKF 120
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQ 179
K+EYFRRVTAVGYSCVVFGWMTIL+ KQPSSKL++FG LSLPISFAPFESLIFTSI+VPQ
Sbjct: 121 KVEYFRRVTAVGYSCVVFGWMTILATKQPSSKLNIFGVLSLPISFAPFESLIFTSIMVPQ 180
Query: 180 ASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESV 239
ASF+GHLSGIIVGY+IAWGL+HGMNNYWA+SM GWIVLVFV SLKR+G+ D F+EIE V
Sbjct: 181 ASFIGHLSGIIVGYSIAWGLVHGMNNYWAISMFGWIVLVFVLSLKRTGSMDLRFIEIEPV 240
Query: 240 TDPSLPSVRFIG--NGRTLQMSAIPVEGV 266
TDPSLPSV + NGRTLQM +P GV
Sbjct: 241 TDPSLPSVGVVASRNGRTLQMDVLPRRGV 269
>gi|115441593|ref|NP_001045076.1| Os01g0895500 [Oryza sativa Japonica Group]
gi|57899816|dbj|BAD87561.1| unknown protein [Oryza sativa Japonica Group]
gi|113534607|dbj|BAF06990.1| Os01g0895500 [Oryza sativa Japonica Group]
gi|215686553|dbj|BAG88806.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 273
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/269 (78%), Positives = 240/269 (89%), Gaps = 3/269 (1%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDG-HHWRIITSAF 59
MG+PL YEI+EKPA+S +IGICS+IWF+IQK+NIGY VGLSYE A++G +WRIITSAF
Sbjct: 1 MGKPLIYEILEKPASSSVIGICSLIWFFIQKRNIGYGDVGLSYEAAMEGGQYWRIITSAF 60
Query: 60 SHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
SHISV+HLVFNMSALWSLGVVEQLG +GLG YYL YTLVLVVLSGLLVLG YH++IQ+F
Sbjct: 61 SHISVVHLVFNMSALWSLGVVEQLGQIGLGVEYYLHYTLVLVVLSGLLVLGFYHVMIQKF 120
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQ 179
K+EYFRRVTAVGYSCVVFGWMTIL+ KQPSSKL++FG LSLPISFAPFESLIFTSI+VPQ
Sbjct: 121 KVEYFRRVTAVGYSCVVFGWMTILATKQPSSKLNIFGVLSLPISFAPFESLIFTSIMVPQ 180
Query: 180 ASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESV 239
ASF+GHLSGIIVGY+IAWGL+HGMNNYWA++M GWIVLVFV SLKR+G+ D F+EIE V
Sbjct: 181 ASFIGHLSGIIVGYSIAWGLVHGMNNYWAITMFGWIVLVFVLSLKRTGSMDLRFIEIEPV 240
Query: 240 TDPSLPSVRFIG--NGRTLQMSAIPVEGV 266
TDPSLPSV + NGRTLQM +P GV
Sbjct: 241 TDPSLPSVGVVASRNGRTLQMDVLPRRGV 269
>gi|357126318|ref|XP_003564835.1| PREDICTED: rhomboid protein 2-like [Brachypodium distachyon]
Length = 273
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/268 (78%), Positives = 240/268 (89%), Gaps = 3/268 (1%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDG-HHWRIITSAF 59
MG+PL YEI+EKPA+S +IG+CS+IWF IQK+NIGY+ VGLSYE A++G +WRIITSAF
Sbjct: 1 MGKPLIYEILEKPASSSVIGVCSLIWFLIQKRNIGYADVGLSYEAALEGGQYWRIITSAF 60
Query: 60 SHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
SHISV+HLVFNMSALWSLG VEQLG +GLG YYL YTLVLVVLSGLLVLGIYH++IQ+F
Sbjct: 61 SHISVVHLVFNMSALWSLGAVEQLGQLGLGVEYYLHYTLVLVVLSGLLVLGIYHVMIQKF 120
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQ 179
K+EYFRRVTAVGYSCVVFGWMTIL+ KQPSSKL+LFG LSLPISFAPFESLIFTSI+VPQ
Sbjct: 121 KVEYFRRVTAVGYSCVVFGWMTILAAKQPSSKLNLFGVLSLPISFAPFESLIFTSIMVPQ 180
Query: 180 ASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESV 239
ASF+GHLSGIIVGY+IAWGLIHGMNNYWA++MLGWIVLVFV+SLKR+G+ + F+EIE V
Sbjct: 181 ASFIGHLSGIIVGYSIAWGLIHGMNNYWAITMLGWIVLVFVFSLKRTGSIELRFIEIEPV 240
Query: 240 TDPSLPSVRFIG--NGRTLQMSAIPVEG 265
TDPSLPSV + NGRTLQM P G
Sbjct: 241 TDPSLPSVGVLSSRNGRTLQMDVQPGRG 268
>gi|222619672|gb|EEE55804.1| hypothetical protein OsJ_04394 [Oryza sativa Japonica Group]
Length = 362
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/270 (77%), Positives = 238/270 (88%), Gaps = 3/270 (1%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDG-HHWRIITSAF 59
MG+PL YEI+EKPA+S +IGICS+IWF+IQK+NIGY VGLSYE A++G +WRIITSAF
Sbjct: 1 MGKPLIYEILEKPASSSVIGICSLIWFFIQKRNIGYGDVGLSYEAAMEGGQYWRIITSAF 60
Query: 60 SHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
SHISV+HLVFNMSALWSLGVVEQLG +GLG YYL YTLVLVVLSGLLVLG YH++IQ+F
Sbjct: 61 SHISVVHLVFNMSALWSLGVVEQLGQIGLGVEYYLHYTLVLVVLSGLLVLGFYHVMIQKF 120
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQ 179
K+EYFRRVTAVGYSCVVFGWMTIL+ KQPSSKL++FG LSLPISFAPFESLIFTSI+VPQ
Sbjct: 121 KVEYFRRVTAVGYSCVVFGWMTILATKQPSSKLNIFGVLSLPISFAPFESLIFTSIMVPQ 180
Query: 180 ASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESV 239
ASF+GHLSGIIVGY+IAWGL+HGMNNYWA++M GWIVLVFV SLKR+G+ D F+EIE V
Sbjct: 181 ASFIGHLSGIIVGYSIAWGLVHGMNNYWAITMFGWIVLVFVLSLKRTGSMDLRFIEIEPV 240
Query: 240 TDPSLPSVRFIG--NGRTLQMSAIPVEGVE 267
TDPSLPSV + NGRTLQM GV
Sbjct: 241 TDPSLPSVGVVASRNGRTLQMDVPSRRGVS 270
>gi|242059531|ref|XP_002458911.1| hypothetical protein SORBIDRAFT_03g042510 [Sorghum bicolor]
gi|241930886|gb|EES04031.1| hypothetical protein SORBIDRAFT_03g042510 [Sorghum bicolor]
Length = 273
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/265 (78%), Positives = 238/265 (89%), Gaps = 3/265 (1%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDG-HHWRIITSAF 59
MG+PL YEI+EKPA+S +IGICS+IW+ IQK+ IGY+ VGLSYE AVDG +WRIITSAF
Sbjct: 1 MGKPLIYEILEKPASSSVIGICSLIWWLIQKRGIGYADVGLSYEAAVDGGQYWRIITSAF 60
Query: 60 SHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
SHISV+HLVFNMSALWSLGVVEQLG +GLG YYL YTLVLVVLSGLLVLG YH++IQRF
Sbjct: 61 SHISVVHLVFNMSALWSLGVVEQLGQIGLGVEYYLHYTLVLVVLSGLLVLGFYHMMIQRF 120
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQ 179
K+EYFRRVTAVGYSCVVFGWMTIL+ KQPSSKL++FG LSLPISFAPFESLIFTSI+VPQ
Sbjct: 121 KVEYFRRVTAVGYSCVVFGWMTILAAKQPSSKLNIFGVLSLPISFAPFESLIFTSIMVPQ 180
Query: 180 ASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESV 239
ASF+GHLSGIIVGY+IAWGLIHGMNNYWA++MLGWI LVFV SLKR+G+ + +F+EIE V
Sbjct: 181 ASFIGHLSGIIVGYSIAWGLIHGMNNYWAITMLGWIALVFVLSLKRTGSMELSFIEIEPV 240
Query: 240 TDPSLPSVRFIG--NGRTLQMSAIP 262
TDPSLPSV + NGRTLQM +P
Sbjct: 241 TDPSLPSVGVVAPRNGRTLQMDVLP 265
>gi|219363065|ref|NP_001136563.1| putative Rhomboid family protein [Zea mays]
gi|194696188|gb|ACF82178.1| unknown [Zea mays]
gi|195635987|gb|ACG37462.1| rhomboid family protein [Zea mays]
gi|413951669|gb|AFW84318.1| putative Rhomboid family protein [Zea mays]
Length = 275
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 203/266 (76%), Positives = 235/266 (88%), Gaps = 5/266 (1%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVD-GHHWRIITSAF 59
MG+PL YEI+EKPA+S +IGICS+IW+ IQK+ IGY+ VGLSYE AVD G +WR+ITSAF
Sbjct: 1 MGKPLIYEILEKPASSSVIGICSLIWWLIQKRGIGYADVGLSYEAAVDSGQYWRVITSAF 60
Query: 60 SHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
SH+SV+HLVFNMSALWSLG VEQLG +GLG YYL YTLVLVVLSGLLVLG YH++IQRF
Sbjct: 61 SHVSVVHLVFNMSALWSLGAVEQLGQIGLGVEYYLHYTLVLVVLSGLLVLGFYHVMIQRF 120
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQ 179
K+EYFRRVTAVGYSCVVFGWMTIL+ KQPSSKL++FG LSLPISFAPFESLIFTSI+VPQ
Sbjct: 121 KVEYFRRVTAVGYSCVVFGWMTILAAKQPSSKLNIFGVLSLPISFAPFESLIFTSIMVPQ 180
Query: 180 ASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESV 239
ASF+GHLSGIIVGY+IAWGL+HGMNNYWA++MLGW LVFV SLKR+G+ + +F+EIE V
Sbjct: 181 ASFIGHLSGIIVGYSIAWGLVHGMNNYWAVTMLGWTALVFVLSLKRTGSMELSFIEIEPV 240
Query: 240 TDPSLPSVRFI----GNGRTLQMSAI 261
TDPSLPSV + G RTLQM A+
Sbjct: 241 TDPSLPSVGVVATRNGRSRTLQMDAL 266
>gi|326529769|dbj|BAK04831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 274
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/270 (75%), Positives = 237/270 (87%), Gaps = 4/270 (1%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDG-HHWRIITSAF 59
MG+PL YE++EKPA+S +I +CS+IWF IQKK IGY+ VGLSYE AV+G HWR+IT+AF
Sbjct: 1 MGKPLIYEMLEKPASSGVIALCSLIWFLIQKKGIGYADVGLSYEAAVEGGQHWRLITAAF 60
Query: 60 SHISVLHLVFNMSALWSLGVVEQLG-DVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR 118
SH+SV+HLVFNMSALWSLG VEQLG GLG YYL YTLVLVVLSGLLVLGIYH++I+R
Sbjct: 61 SHVSVVHLVFNMSALWSLGAVEQLGPQAGLGVQYYLHYTLVLVVLSGLLVLGIYHVMIRR 120
Query: 119 FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVP 178
FK++YFRRVTAVGYSCVVFGWMTIL+ KQPSSKL+LFG LSLPISFAPFESLIFTSI+VP
Sbjct: 121 FKVDYFRRVTAVGYSCVVFGWMTILAAKQPSSKLNLFGVLSLPISFAPFESLIFTSIMVP 180
Query: 179 QASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIES 238
QASF+GHLSGIIVGY+IAWGLIHGMNNYWA++MLGWIVLVFV SLKR+G+ + F+EIE
Sbjct: 181 QASFVGHLSGIIVGYSIAWGLIHGMNNYWAVTMLGWIVLVFVLSLKRTGSLEMRFIEIEP 240
Query: 239 VTDPSLPSVRFIG--NGRTLQMSAIPVEGV 266
VTDPSLPS+ + NGRTLQM +P V
Sbjct: 241 VTDPSLPSLGAVASRNGRTLQMDMLPGRAV 270
>gi|21952847|dbj|BAC06262.1| P0696G06.19 [Oryza sativa Japonica Group]
Length = 685
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/251 (78%), Positives = 224/251 (89%), Gaps = 3/251 (1%)
Query: 19 IGICSVIWFYIQKKNIGYSHVGLSYETAVDG-HHWRIITSAFSHISVLHLVFNMSALWSL 77
+GICS+IWF+IQK+NIGY VGLSYE A++G +WRIITSAFSHISV+HLVFNMSALWSL
Sbjct: 431 VGICSLIWFFIQKRNIGYGDVGLSYEAAMEGGQYWRIITSAFSHISVVHLVFNMSALWSL 490
Query: 78 GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVF 137
GVVEQLG +GLG YYL YTLVLVVLSGLLVLG YH++IQ+FK+EYFRRVTAVGYSCVVF
Sbjct: 491 GVVEQLGQIGLGVEYYLHYTLVLVVLSGLLVLGFYHVMIQKFKVEYFRRVTAVGYSCVVF 550
Query: 138 GWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
GWMTIL+ KQPSSKL++FG LSLPISFAPFESLIFTSI+VPQASF+GHLSGIIVGY+IAW
Sbjct: 551 GWMTILATKQPSSKLNIFGVLSLPISFAPFESLIFTSIMVPQASFIGHLSGIIVGYSIAW 610
Query: 198 GLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVTDPSLPSVRFIG--NGRT 255
GL+HGMNNYWA++M GWIVLVFV SLKR+G+ D F+EIE VTDPSLPSV + NGRT
Sbjct: 611 GLVHGMNNYWAITMFGWIVLVFVLSLKRTGSMDLRFIEIEPVTDPSLPSVGVVASRNGRT 670
Query: 256 LQMSAIPVEGV 266
LQM +P GV
Sbjct: 671 LQMDVLPRRGV 681
>gi|168005315|ref|XP_001755356.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693484|gb|EDQ79836.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 272
Score = 362 bits (929), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 176/271 (64%), Positives = 215/271 (79%), Gaps = 10/271 (3%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAV-DGHHWRIITSAF 59
MGRPL Y+I+++PA++C+I ICS W YIQ++N+GYS VGLSYE+ + G +WR ITSAF
Sbjct: 1 MGRPLIYDILDRPASTCVIAICSATWLYIQQRNVGYSDVGLSYESVISQGQYWRFITSAF 60
Query: 60 SHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
SHIS LHLVFNMSALWSLGVVE D LGTAYY+QYT +LV+LSGL+VLG+YH+LI R
Sbjct: 61 SHISFLHLVFNMSALWSLGVVESFNDYNLGTAYYIQYTTILVLLSGLMVLGMYHVLITRA 120
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQ 179
KLEY+RRVTAVGYSCVVFGWMTIL+V+QPS KL+LFG LSLPIS APFESLIFTSIIVPQ
Sbjct: 121 KLEYYRRVTAVGYSCVVFGWMTILAVRQPSLKLNLFGLLSLPISLAPFESLIFTSIIVPQ 180
Query: 180 ASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESV 239
ASFLGHL+GI+VGY I WG++ GM YWA ++ WI L FV+SL R+ ++ +LE++SV
Sbjct: 181 ASFLGHLAGILVGYLIGWGVVQGMTIYWAATLTFWIALGFVWSLSRTTSFQLPYLEVDSV 240
Query: 240 TDPSLPSV---------RFIGNGRTLQMSAI 261
D +PSV + G RTLQ S +
Sbjct: 241 ADLDMPSVGAAPSSTSTSWSGASRTLQGSNL 271
>gi|224132770|ref|XP_002327876.1| predicted protein [Populus trichocarpa]
gi|222837285|gb|EEE75664.1| predicted protein [Populus trichocarpa]
Length = 199
Score = 356 bits (914), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 178/199 (89%), Positives = 187/199 (93%)
Query: 71 MSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAV 130
MSALWSLGVVEQLG +GLG AYYL YTLVLVVLSG LVLG+YH+LIQRFKLEYFRRVTAV
Sbjct: 1 MSALWSLGVVEQLGHIGLGMAYYLHYTLVLVVLSGALVLGMYHILIQRFKLEYFRRVTAV 60
Query: 131 GYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGII 190
GYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGI+
Sbjct: 61 GYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIV 120
Query: 191 VGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVTDPSLPSVRFI 250
VGYAIAWGLIHGMNN+WA+SMLGWIVL V SLKRSG YDF+F+EIESV DPSLPSVRF
Sbjct: 121 VGYAIAWGLIHGMNNFWAISMLGWIVLFSVVSLKRSGAYDFDFIEIESVMDPSLPSVRFP 180
Query: 251 GNGRTLQMSAIPVEGVEIV 269
G GR LQMSA+PVEGVEIV
Sbjct: 181 GTGRALQMSALPVEGVEIV 199
>gi|302785620|ref|XP_002974581.1| hypothetical protein SELMODRAFT_101862 [Selaginella moellendorffii]
gi|300157476|gb|EFJ24101.1| hypothetical protein SELMODRAFT_101862 [Selaginella moellendorffii]
Length = 272
Score = 339 bits (869), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 176/275 (64%), Positives = 219/275 (79%), Gaps = 9/275 (3%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAV-DGHHWRIITSAF 59
MGRPL Y+I+++PA+SC+I +CS +W YIQ ++IGY+ VG+SYET V G +WRI+TS+F
Sbjct: 1 MGRPLVYDIIDRPASSCLIALCSAVWLYIQHRSIGYAEVGMSYETVVLQGQYWRILTSSF 60
Query: 60 SHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
SHIS LHLVFNMSALWSLG+VE L +GLG +Y+ YTL+LV+LS LVLGIYHLLI RF
Sbjct: 61 SHISFLHLVFNMSALWSLGMVEGLKGIGLGVTFYVHYTLLLVLLSAALVLGIYHLLIHRF 120
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQ 179
LE ++RV+AVGYSCVVFGWMTIL+ KQPSSKL+LFG LSLPI+FAPFESL+FTSIIVP+
Sbjct: 121 NLELYKRVSAVGYSCVVFGWMTILASKQPSSKLELFGLLSLPINFAPFESLVFTSIIVPK 180
Query: 180 ASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESV 239
ASFLGHL+GIIVGY IAWG I GM NYW +S+L W+VL+ S+ R+ +Y F FL+IE V
Sbjct: 181 ASFLGHLAGIIVGYLIAWGSIQGMTNYWFVSLLAWMVLLLGLSIHRTSSYQFWFLQIEPV 240
Query: 240 TDPSLPSVRFIGNGRTLQM-----SAIPVEGVEIV 269
DPS+P + N TL +A PV G ++V
Sbjct: 241 ADPSVPQ---LSNSPTLLQNSSFATAPPVFGSQLV 272
>gi|302759717|ref|XP_002963281.1| hypothetical protein SELMODRAFT_79372 [Selaginella moellendorffii]
gi|300168549|gb|EFJ35152.1| hypothetical protein SELMODRAFT_79372 [Selaginella moellendorffii]
Length = 272
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 175/275 (63%), Positives = 218/275 (79%), Gaps = 9/275 (3%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAV-DGHHWRIITSAF 59
MGRPL Y+I+++PA+SC+I +CS +W YIQ ++IGY+ VG+SYET V G +WRI+TS+F
Sbjct: 1 MGRPLVYDIIDRPASSCLIALCSAVWLYIQHRSIGYAEVGMSYETVVLQGQYWRILTSSF 60
Query: 60 SHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
SHIS LHLVFNMSALWSLG+VE L +GLG +Y+ YTL+LV+LS LVLGIYH L+ RF
Sbjct: 61 SHISFLHLVFNMSALWSLGMVEGLKGIGLGITFYVHYTLLLVLLSAALVLGIYHFLVHRF 120
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQ 179
LE ++RV+AVGYSCVVFGWMTIL+ KQPSSKL+LFG LSLPI+FAPFESL+FTSIIVP+
Sbjct: 121 NLELYKRVSAVGYSCVVFGWMTILASKQPSSKLELFGLLSLPINFAPFESLVFTSIIVPK 180
Query: 180 ASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESV 239
ASFLGHL+GIIVGY IAWG I GM NYW +S+L W+VL+ S+ R+ +Y F FL+IE V
Sbjct: 181 ASFLGHLAGIIVGYLIAWGSIQGMTNYWFVSLLAWMVLLLGLSIHRTSSYQFWFLQIEPV 240
Query: 240 TDPSLPSVRFIGNGRTLQMS-----AIPVEGVEIV 269
DPS+P + N TL S A PV G ++V
Sbjct: 241 ADPSVPQ---LSNSPTLLQSSSFATAPPVFGSQLV 272
>gi|255080834|ref|XP_002503990.1| predicted protein [Micromonas sp. RCC299]
gi|226519257|gb|ACO65248.1| predicted protein [Micromonas sp. RCC299]
Length = 183
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/185 (57%), Positives = 145/185 (78%), Gaps = 6/185 (3%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAV-DGHHWRIITSAFSHISVLHLVFNM 71
P TS +I +CS +W+++ K +GY VG+SY V D +WR +T++FSHIS LHL+FNM
Sbjct: 1 PITSLVIALCSGVWYFLNSKGLGYEEVGVSYAKVVRDREYWRCLTASFSHISPLHLLFNM 60
Query: 72 SALWSLGVVEQL---GDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVT 128
S+LWSLGVVEQ+ G+ G G+ +Y++YTLV++V + LV+ YH+L+ R E + RVT
Sbjct: 61 SSLWSLGVVEQMRGRGE-GWGSGWYVRYTLVMLVGTMALVILSYHVLV-RMGHERYERVT 118
Query: 129 AVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSG 188
AVGYSCVVFGWMT+LSV+QP+S L L G++ LP++ APF SLIFTS++VPQASF+GHL+G
Sbjct: 119 AVGYSCVVFGWMTVLSVRQPTSSLSLLGYIQLPVNLAPFGSLIFTSVVVPQASFVGHLAG 178
Query: 189 IIVGY 193
I+VGY
Sbjct: 179 IVVGY 183
>gi|303289455|ref|XP_003064015.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454331|gb|EEH51637.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 319
Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 106/226 (46%), Positives = 155/226 (68%), Gaps = 14/226 (6%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAV-DGHHWRIITSAF 59
M RPL ++E+P TS ++ C+ I +Y+ + +GY VG+SY V + + R +T++
Sbjct: 1 MARPLHEGVLERPVTSLVVATCAAITWYLHARGLGYDDVGMSYAAVVREKKYHRCVTASL 60
Query: 60 SHISVLHLVFNMSALWSLGVVEQLGDVGL------------GTAYYLQYTLVLVVLSGLL 107
SH+SVLHL+FNMS LWS GVVE G G+ G+A+Y + +L++++ + +
Sbjct: 61 SHVSVLHLLFNMSTLWSCGVVEAAGGRGVMSDAESAAGYPWGSAWYARLSLLMLLGTCGI 120
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLF-GFLSLPISFAP 166
VL YH+L+ RF+ E + RVTAVGYS VVFGWMTILSVK+P+S L L G ++LP++ AP
Sbjct: 121 VLATYHVLLTRFRREEYERVTAVGYSAVVFGWMTILSVKRPTSSLVLIGGAVNLPVNLAP 180
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSML 212
F SL FTSI+VP+ASF+GHL+GI++GY IAW L N W ++++
Sbjct: 181 FASLAFTSIVVPRASFVGHLAGIVMGYLIAWDLFAWFNWRWCVAVV 226
>gi|307109842|gb|EFN58079.1| hypothetical protein CHLNCDRAFT_142374 [Chlorella variabilis]
Length = 727
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 150/223 (67%), Gaps = 7/223 (3%)
Query: 7 YEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHH-WRIITSAFSHISVL 65
Y+ + +PATS + + +V + IQ +++GY VGLSY+ V WR S +HI ++
Sbjct: 452 YQALAQPATSALALLLTVAYALIQWRHLGYPDVGLSYDRVVVHRELWRTAASQLAHIDLV 511
Query: 66 HLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFR 125
HL FN+SALWS+G+VE+ LGT +YLQ+T +L +LS + + IYHLLI + E +R
Sbjct: 512 HLAFNLSALWSIGLVERT----LGTLHYLQHTALLFLLSPAICILIYHLLIVVGQREQYR 567
Query: 126 RVTAVGYSCVVFGWMTILSVKQPS--SKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
VTAVGYSCV+FGWM++++ +P + L +FG S+P+ P+ SL+ TS+++P+ASF+
Sbjct: 568 EVTAVGYSCVLFGWMSLMATSKPGGITMLPVFGLASIPLWATPWASLLITSLLIPRASFV 627
Query: 184 GHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRS 226
GHL+G++ GYA+A G +N +W+LS+L W + Y+ RS
Sbjct: 628 GHLAGMLAGYAVALGAFSWLNPWWSLSLLAWAAMGLSYAAARS 670
>gi|384251613|gb|EIE25090.1| rhomboid-domain-containing protein, partial [Coccomyxa
subellipsoidea C-169]
Length = 260
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/254 (42%), Positives = 159/254 (62%), Gaps = 9/254 (3%)
Query: 5 LFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHH-WRIITSAFSHIS 63
L +++E+PATS + + + ++ YI IGY+ VGL+Y+ AV WR++T+ SH+
Sbjct: 1 LMCQVVERPATSLVSTLLTAVYLYITSHGIGYADVGLNYDQAVQKLELWRVLTAQVSHVE 60
Query: 64 VLHLVFNMSALWSLGVVEQLGDVGL--GTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKL 121
+LHL+FN+S LWSLGV+E+ G GT YYLQ +LVL++ SGL+ L YH+L +
Sbjct: 61 LLHLLFNLSTLWSLGVIEESNGNGAKGGTRYYLQTSLVLLIFSGLVCLLFYHVLGVVLRR 120
Query: 122 EYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQAS 181
E + VT VGYS V+FGWMTILS + + +FG ++P+ PF SL+ TSII+P+AS
Sbjct: 121 EQYHTVTTVGYSAVIFGWMTILS-RTGVASFSVFGLANIPMWLTPFASLVLTSIIIPRAS 179
Query: 182 FLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEI---ES 238
FLGHLSGI+VG+ +A G+ + +W S+L W + V+ L R + +L + E
Sbjct: 180 FLGHLSGIVVGFMVASGVFDWLTLWWLGSLLAWSGALLVFHLVRIERLEVPWLRMMPSEG 239
Query: 239 VTD--PSLPSVRFI 250
D +P VR +
Sbjct: 240 AGDIETGVPVVRIV 253
>gi|428173649|gb|EKX42550.1| hypothetical protein GUITHDRAFT_88083, partial [Guillardia theta
CCMP2712]
Length = 241
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 130/218 (59%), Gaps = 9/218 (4%)
Query: 4 PLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYE-TAVDGHHWRIITSAFSHI 62
P + + PAT+ +IG C IW+ I + + Y +G SY ++ WR ++++ SHI
Sbjct: 7 PEIVQWLRFPATASVIGTCCTIWYLIWRNRLDYVDLGSSYRFVVIEKQWWRTLSASLSHI 66
Query: 63 SVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLE 122
+++HL FNM + W L EQ+ LG+ YL++TLV ++LS + I+H+L++ E
Sbjct: 67 NLVHLGFNMFSTWQLRHAEQI----LGSLEYLRFTLVFLLLSVIFQNAIHHVLLRTPSAE 122
Query: 123 YFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASF 182
Y VG+SCVVF WMT +S+ LD F F +P + +PF SLIFT +++P+ F
Sbjct: 123 YTLNTVGVGFSCVVFAWMTWMSLLTSGQSLD-FLFFRVPYNMSPFASLIFTQLMIPRVDF 181
Query: 183 LGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFV 220
+GHLSGII GY WGL ++ YW + +L VL FV
Sbjct: 182 IGHLSGIIAGYWQGWGLNAWLDGYWTVQIL---VLYFV 216
>gi|290980876|ref|XP_002673157.1| rhomboid domain-containing protein [Naegleria gruberi]
gi|284086739|gb|EFC40413.1| rhomboid domain-containing protein [Naegleria gruberi]
Length = 296
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 113/197 (57%), Gaps = 10/197 (5%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAV-DGHHWRIITSAFSHISVLHLVFNM 71
P + I+ I ++++F + I V +Y+ + + WRI+TS FSH S++H++FN+
Sbjct: 12 PLSFTIVLINTIVFFILSFGRIPSEFVSYNYDKIIGEKQVWRIVTSTFSHFSIIHILFNL 71
Query: 72 SALWSLGVVEQLGDVGLGT------AYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFR 125
+LW + VE +G LG+ Y + T +L+V S L + Y L++ K E +R
Sbjct: 72 GSLWGMRQVELIGQETLGSHSFHSVMEYFKITFLLLVFSTLFITVTYFCLVKFMKWENYR 131
Query: 126 RVTAVGYSCVVFGWMT--ILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
+V VGYS V+FG MT IL S +FG L+LP PF SLI T +++PQASF+
Sbjct: 132 QVNIVGYSGVLFGMMTMSILQNGISSKGSSMFG-LNLPNILMPFMSLILTQMLIPQASFV 190
Query: 184 GHLSGIIVGYAIAWGLI 200
GHL GI+ + +G++
Sbjct: 191 GHLGGIVGAFITYYGIL 207
>gi|452822090|gb|EME29113.1| hypothetical protein isoform 1 [Galdieria sulphuraria]
Length = 195
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 103/181 (56%), Gaps = 5/181 (2%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETA-VDGHHWRIITSAFSHISVLHLVFNM 71
P T +I IC ++W I K Y VG +Y+ VD WR I+S SHIS++HL+ NM
Sbjct: 19 PVTCLVIAICIIVWLVITYKGWSYYDVGCNYDCVIVDKETWRWISSTLSHISLMHLILNM 78
Query: 72 SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVG 131
+LW+L +EQ LG+ YL + +V+ LS + L I +L + F E R V VG
Sbjct: 79 YSLWNLSWMEQ----RLGSLVYLTWNVVIAFLSTCVTLFINYLQLTVFHSEQVRHVYLVG 134
Query: 132 YSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIV 191
YS V+FG I S +++ + + + + PF SL +++VP+ASF+GH SGI++
Sbjct: 135 YSAVLFGLFVIASQHIKVARIWILDEVLISPIWIPFISLGVVTLLVPEASFVGHCSGILI 194
Query: 192 G 192
G
Sbjct: 195 G 195
>gi|255635040|gb|ACU17878.1| unknown [Glycine max]
Length = 84
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/60 (90%), Positives = 55/60 (91%)
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESL 170
+YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF L
Sbjct: 1 MYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFGRLNRL 60
>gi|298713340|emb|CBJ33566.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 677
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 116/210 (55%), Gaps = 17/210 (8%)
Query: 8 EIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETA-VDGHHWRIITSAFSHISVLH 66
EI+ P T ++ I +++ + V +SY + +WR+ T++FSH LH
Sbjct: 192 EIVSYPGTVLLLVINLAFAYHLWANRVSPDAVAISYARFWEEREYWRLFTASFSHFEPLH 251
Query: 67 LVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRR 126
LVFN W+ +E+L LGT YL +L LVV + ++V+ I H L++ +E R
Sbjct: 252 LVFNAMGTWNTRELERL----LGTFRYLYLSLDLVVTTIMVVMVIKHALVKWRGVESQRE 307
Query: 127 VTAVGYSCVVFGWMTILSVKQ-----------PSSKLDLF-GFLSLPISFAPFESLIFTS 174
AVG+SCV+F +MT L+V + + +F G SLP++ PF S
Sbjct: 308 GKAVGFSCVLFAYMTYLAVAMREFCPIGTLCFSTYSIPMFWGMPSLPVNLGPFASQAIAQ 367
Query: 175 IIVPQASFLGHLSGIIVGYAIAWGLIHGMN 204
+++P+A+FLGHLSGI +GY +AWG + G++
Sbjct: 368 VVMPRAAFLGHLSGIFMGYLMAWGFLGGLS 397
>gi|302851004|ref|XP_002957027.1| hypothetical protein VOLCADRAFT_45044 [Volvox carteri f.
nagariensis]
gi|300257583|gb|EFJ41829.1| hypothetical protein VOLCADRAFT_45044 [Volvox carteri f.
nagariensis]
Length = 194
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 105/194 (54%), Gaps = 13/194 (6%)
Query: 8 EIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLH 66
+++ P TS + +C +W ++ ++ + + VGLSY V H W R + S H +LH
Sbjct: 1 QVINHPGTSAVTALCVGVWLWLLQRGVSPAAVGLSYHRFVTDHQWWRALISQICHFELLH 60
Query: 67 LVFNMSALWSLGVVEQ---LGDVGLGTAY---------YLQYTLVLVVLSGLLVLGIYHL 114
LV N+S+LW L + + D G A YL+ +L+L++ + L ++H+
Sbjct: 61 LVLNISSLWGLAALAEGAPAEDSASGAARGPSLVPTLEYLRVSLLLLLTCAAICLALHHV 120
Query: 115 LIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTS 174
+ LE FR VGYS V+FGWMT+++ + L G+ S+ + APF L+ T
Sbjct: 121 AVAVLGLERFRHSLLVGYSGVLFGWMTLIAWGEFRGGFSLLGWSSVSATVAPFLLLLVTQ 180
Query: 175 IIVPQASFLGHLSG 188
++P ASFLGHLSG
Sbjct: 181 ALLPTASFLGHLSG 194
>gi|452822089|gb|EME29112.1| hypothetical protein isoform 2 [Galdieria sulphuraria]
Length = 196
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 94/171 (54%), Gaps = 5/171 (2%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETA-VDGHHWRIITSAFSHISVLHLVFNM 71
P T +I IC ++W I K Y VG +Y+ VD WR I+S SHIS++HL+ NM
Sbjct: 19 PVTCLVIAICIIVWLVITYKGWSYYDVGCNYDCVIVDKETWRWISSTLSHISLMHLILNM 78
Query: 72 SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVG 131
+LW+L +EQ LG+ YL + +V+ LS + L I +L + F E R V VG
Sbjct: 79 YSLWNLSWMEQ----RLGSLVYLTWNVVIAFLSTCVTLFINYLQLTVFHSEQVRHVYLVG 134
Query: 132 YSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASF 182
YS V+FG I S +++ + + + + PF SL +++VP+ASF
Sbjct: 135 YSAVLFGLFVIASQHIKVARIWILDEVLISPIWIPFISLGVVTLLVPEASF 185
>gi|397573927|gb|EJK48937.1| hypothetical protein THAOC_32226 [Thalassiosira oceanica]
Length = 713
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 111/224 (49%), Gaps = 34/224 (15%)
Query: 9 IMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHL 67
+++ PAT II + + F+ + + S V Y V H W R IT A +H +LH+
Sbjct: 244 VIDHPATCVIILVNVALAFHYWNRRVDPSSVSKQYARIVHEHEWWRGITGATAHFDLLHV 303
Query: 68 VFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQ---------- 117
FNM ++ +LG ++ L + +L + LVV + ++++ + + I+
Sbjct: 304 GFNMVSMDNLG--REIEGTLLNSIEFLMWNFALVVYTTIIMIAMVYARIRYLQRKIDACG 361
Query: 118 --------RFKLEYFRRVTAVGYSCVVFGWMTILSVKQ-------PSSKLDLFGFLSLP- 161
K + R ++VGYS V+F WM + ++++ P +K F +P
Sbjct: 362 NAEIRATYEMKQDKLRSTSSVGYSAVLFAWMVVSTMERKMPTCPIPFAKDVCFATYEVPG 421
Query: 162 -----ISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLI 200
+++P SLIF II P+ SF+GHL+GII G+ + WGL+
Sbjct: 422 LSWLRFNWSPIVSLIFCQIIFPRVSFIGHLAGIICGFLLHWGLL 465
>gi|219126331|ref|XP_002183413.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405169|gb|EEC45113.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 687
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 21/216 (9%)
Query: 3 RPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAV-DGHHWRIITSAFSH 61
+P ++EKPAT +GI + F + I S V Y + DG WR ++ A +H
Sbjct: 225 KPWQRMLLEKPATLFWMGINIGLAFVYWNRRIAVSSVAKVYSKMMHDGEIWRGLSGATAH 284
Query: 62 ISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKL 121
HL FNM AL+SLG + D G+ Y T + S +L I+ LL++ K
Sbjct: 285 FETWHLFFNMQALYSLGSELESND---GSTKYSSVTFFMYTASLVLWTTIFWLLLETLKR 341
Query: 122 EYFRRVT--------AVGYSCVVFGWMTILSVKQ---------PSSKLDLFGFLSLPISF 164
+ ++ VG+S V+F WM + S++Q PS F+ +F
Sbjct: 342 RFESAMSPVASGDSPTVGFSGVLFAWMVVASLEQSQTCPVHFLPSLCFVTHEFVGFRFNF 401
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLI 200
AP L +++P+ S GHL+GI+ G A+ WGL+
Sbjct: 402 APLVQLGIAQVLLPRVSLTGHLAGILSGLALHWGLL 437
>gi|320168465|gb|EFW45364.1| hypothetical protein CAOG_03370 [Capsaspora owczarzaki ATCC 30864]
Length = 451
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 111/217 (51%), Gaps = 15/217 (6%)
Query: 9 IMEKPAT-SCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLH 66
I+ +PA+ +C+ + S + ++ K + + V SY + RIIT+ F H S++H
Sbjct: 80 IITRPASFACLFALLSGFFGFLNYK-VDFEQVTFSYAAVYERQQLSRIITAPFFHASLVH 138
Query: 67 LVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF------- 119
L+ NMSA+W+ E+ GT Y++ T +L+ LS + L + H L+
Sbjct: 139 LLMNMSAVWTCSFFEE----ERGTLEYMRATALLIGLSAFVHLALTHCLVLHANWRGLVE 194
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQ 179
+ + +R +VGYS V FG T+L + P + F F + P AP +LI T +V +
Sbjct: 195 RRDSYRTCLSVGYSGVAFGLATLLGLAHPMYPVP-FLFANFPAWSAPLFNLILTQFLVRR 253
Query: 180 ASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIV 216
AS L H+SGII G + +G + ++N+ + V
Sbjct: 254 ASLLAHVSGIIAGVFLHFGGLDVVSNFAVFCLAAQFV 290
>gi|397612198|gb|EJK61641.1| hypothetical protein THAOC_17833 [Thalassiosira oceanica]
Length = 620
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 118/251 (47%), Gaps = 36/251 (14%)
Query: 9 IMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHL 67
++ KP+T ++ + + F+ + + S V Y V H W R +T A +H LH+
Sbjct: 107 VLLKPSTCAVMLLNVALAFHYWNRRVDPSSVSKQYARIVGEHEWWRGLTGATAHFEPLHI 166
Query: 68 VFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQ---------- 117
FNM ++ +LG ++ L + +L + LVV + ++++ + + I+
Sbjct: 167 GFNMMSMNTLG--SEIEGSLLNSVEFLMWNGALVVYTTMIMMAMVYARIRYLQRKIDACG 224
Query: 118 ----------RFKLEYFRRVTAVGYSCVVFGWMTI--LSVKQPS-----------SKLDL 154
K E R ++VGYS V+F WM I + KQP+ S ++
Sbjct: 225 NAQPQLQATYEEKQELLRDTSSVGYSAVLFAWMVISTMERKQPTCPIPFLNDVCFSTYEV 284
Query: 155 FGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGW 214
G L + +P SL I+P+ SF+GHL+GI+ G+ + WGL+ + ++G
Sbjct: 285 PGLPFLRFNLSPIVSLFVCQFIMPRVSFMGHLAGIVAGFLLHWGLLPPLELSSVNVLIGG 344
Query: 215 IVLVFVYSLKR 225
+ L+ ++ +R
Sbjct: 345 VFLLGLWRRRR 355
>gi|328875515|gb|EGG23879.1| hypothetical protein DFA_06017 [Dictyostelium fasciculatum]
Length = 206
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 93/175 (53%), Gaps = 18/175 (10%)
Query: 14 ATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVD-GHHWRIITSAFSHISVLHLVFNMS 72
++ +I I +IW Y + V ++E G +WR I+S F+HI+++HL N
Sbjct: 10 GSTIVIAINILIWVYQYETRSQLESVSFNFEKITRYGQYWRFISSTFTHINLVHLALNSI 69
Query: 73 ALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLL-IQRFKLEYFRRVTAVG 131
+LW L +EQ +G Y++Y+ +++ S L+++ ++ IQR L R +G
Sbjct: 70 SLWQLRFLEQ----SIGLYQYVKYSFFILLSSNLMMMFFISIVNIQRPTLNLKDR-NYIG 124
Query: 132 YSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHL 186
YSCV FG T S+ FGF +L I F SL+FT I+ P ASF+GHL
Sbjct: 125 YSCVCFGLSTYYSLIH-------FGFSNLSI----FTSLLFTQILFPNASFIGHL 168
>gi|224010728|ref|XP_002294321.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969816|gb|EED88155.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 827
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 33/222 (14%)
Query: 9 IMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHL 67
I+ P T+ ++ + ++++F+ I S V +Y H W R T A +H LH+
Sbjct: 233 ILRNPTTTLLLLLNTLLYFHYWNHRIPPSSVCKNYNKMCIHHEWWRGFTGATAHFEPLHI 292
Query: 68 VFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI---------YHLL--- 115
FNM +L +LG + G + G+ +L Y + VV++ L+++G+ Y +L
Sbjct: 293 GFNMMSLNTLGRELEGGGI-FGSVVFLVYNVAFVVMTSLVMMGMVFGRLQWIEYQILRTR 351
Query: 116 --IQRFKLE----YFRRVTAVGYSCVVFGWMTI--LSVKQPSSKLDLF-----------G 156
+ R +LE R + VGYS V+F WM I L QP+ + F G
Sbjct: 352 DEVLRQQLEERQTRLRETSTVGYSAVLFAWMVISTLERNQPTCPIPFFSDVCFSTYSVPG 411
Query: 157 FLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
L + AP SL I+P+ SF+GHL+GII G+ + WG
Sbjct: 412 LPFLKFNIAPVISLFIAQFIMPRVSFMGHLAGIICGFGLHWG 453
>gi|66824471|ref|XP_645590.1| hypothetical protein DDB_G0271574 [Dictyostelium discoideum AX4]
gi|60473711|gb|EAL71651.1| hypothetical protein DDB_G0271574 [Dictyostelium discoideum AX4]
Length = 218
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 103/223 (46%), Gaps = 49/223 (21%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
+ F EI + P TS I+ I +IWF +I V +Y+ + G +WR+I+S FS
Sbjct: 6 LNNEFFIEIKQCPITSIILIINVLIWFNHFAYDISTEKVSFNYKEIIGGQYWRVISSTFS 65
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
H +++HL+ N ++W+ +E + G+ YY +Y
Sbjct: 66 HSNIIHLILNSISIWNTSKIEIIK----GSYYYFKYN----------------------- 98
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
+GYSCV FG + I +K ++ + IS+ PF LI++ ++ A
Sbjct: 99 -------HYIGYSCVCFGLLVIY-IKLITNSI---------ISYYPFLCLIYSCFMIKNA 141
Query: 181 SFLGHLSGIIVGYAIAWGLIH-----GMNNYWALSMLGWIVLV 218
S +GH +GII+G I L N+++ ++++ +I +
Sbjct: 142 SIIGHFNGIIIGALINIDLFEKYLPINKNSFYVITLIIFICFI 184
>gi|154421477|ref|XP_001583752.1| Clan S-, family S54, Rhomboid-like serine peptidase [Trichomonas
vaginalis G3]
gi|121917995|gb|EAY22766.1| Clan S-, family S54, Rhomboid-like serine peptidase [Trichomonas
vaginalis G3]
Length = 289
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 4/153 (2%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
+WRI TS + H ++HL NM + LG + +GT + Y + VLS LL
Sbjct: 48 QNEYWRIFTSQYVHADIIHLAMNMMTFYQLG---NFFERSVGTIAFFYYIFIFGVLSNLL 104
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
I + + E+F +AVG+S V+F I S P S+ + G +P F P+
Sbjct: 105 DCLIAWFMAWGGRPEHFIG-SAVGFSGVLFSLTVIDSAVSPGSQRSVMGLFLVPKDFYPW 163
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLI 200
L+F SII+P AS LGH +G+++GY +GL+
Sbjct: 164 ALLLFMSIIIPSASLLGHATGMVMGYLYIFGLL 196
>gi|300123463|emb|CBK24735.2| Peptidase S54 [Blastocystis hominis]
Length = 398
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 33/212 (15%)
Query: 7 YEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVD-GHHWRIITSAFSHISVL 65
Y + P S + ++I+F++ KN+ + V +SY + ++ G WR+IT++FSH+ +L
Sbjct: 109 YHVTNAPMISLFTVVIALIFFWLWDKNVDATEVAVSYSSVMEKGEVWRVITASFSHLDLL 168
Query: 66 HLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFR 125
H+ N++A A L LVV++ + L + L + LE+ +
Sbjct: 169 HVGLNLTAC--------------HIAIIFSINLWLVVMTQAVHLFLV-WLADKMNLEHGK 213
Query: 126 RVTAVGYSCVVFGWMTILSVK-QPSSKLDLFG-------FLSLP---------ISFAPFE 168
V +GYSCV+F MT + +K ++L+G F LP I+ PF
Sbjct: 214 SVWGLGYSCVLFALMTTIILKGDTQCPVNLYGMCFPTYEFKLLPFPSTCTGIRINLYPFV 273
Query: 169 SLIFTSIIVPQASFLGHLSGIIVGYAIAWGLI 200
L+ +IVP +SF GHL+GI+VG I+ L+
Sbjct: 274 LLVVMKLIVPISSFFGHLAGILVGIVISTDLL 305
>gi|299470170|emb|CBN78198.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 305
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 19/234 (8%)
Query: 2 GRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETA-VDGHHWRIITSAFS 60
RPL ++ PAT + + ++ + ++ + + +G SY V WR++T+A +
Sbjct: 44 ARPLSEQLPTYPATCVLSAVLVTVFLAMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVA 103
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
H +LHL F++S+LWS +E LG+ YL + VVL+ + H+L++ +
Sbjct: 104 HGGLLHLAFSISSLWSCRRIE----TELGSWGYLLASAHFVVLAEVFEKMFMHVLLRTGR 159
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFES----LIFTSII 176
+ + GYS VVF W+ +LS++ + + GF+ F+ F S L+ I+
Sbjct: 160 VV---DEVSCGYSGVVFAWIVVLSLRPDAPARVIGGFV-----FSGFASVVLNLVVVRIL 211
Query: 177 VPQASFLGHLSGIIVGYAIAWGLIH--GMNNYWALSMLGWIVLVFVYSLKRSGT 228
+ Q+SF+GHL+G+ G + G + + YW+L + W + V + SLK + T
Sbjct: 212 IRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALAVLLGSLKATTT 265
>gi|159464026|ref|XP_001690243.1| rhomboid-like protease [Chlamydomonas reinhardtii]
gi|158284231|gb|EDP09981.1| rhomboid-like protease [Chlamydomonas reinhardtii]
Length = 394
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 86/153 (56%), Gaps = 5/153 (3%)
Query: 43 YETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLV 101
YET V +R++TS H +LH+ FNM A + +E+L +GT + L++
Sbjct: 54 YETVVHYEVYRLLTSVLVHGGLLHVTFNMLAFVPMACSLERL----VGTVQFTYLLLLMT 109
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
VL+GL+ LL L R A+G+S V+FG + + + + SS +FG ++P
Sbjct: 110 VLAGLVFTATSFLLFFSHVLPAAMRQCAIGFSGVIFGLIVVDNAQSASSHRSIFGLFTVP 169
Query: 162 ISFAPFESLIFTSIIVPQASFLGHLSGIIVGYA 194
++ P+ L+F +++P SF+GHL+G++VG A
Sbjct: 170 AAYYPWALLLFWQLLMPSVSFIGHLAGVLVGAA 202
>gi|281205968|gb|EFA80157.1| hypothetical protein PPL_06979 [Polysphondylium pallidum PN500]
Length = 338
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 116/244 (47%), Gaps = 28/244 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMS 72
P TS ++ + IW Y +IG H+ S A+ G + R + S FSH ++HLV N
Sbjct: 114 PGTSIMMMLIISIWLYQFNYDIGPYHLTSSCNRALKGEYRRTLLSIFSHSGLIHLVLNCV 173
Query: 73 ALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI---QRFKLEYFRRVTA 129
+L L +E+ G+ YLQYT +L++ ++ + I L QR V +
Sbjct: 174 SLIDLKSIEETE----GSFRYLQYTFMLIITCVVVEIIISKQLSGNGQRLM-----DVES 224
Query: 130 VGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGI 189
+GYS V+FG + I + + +G +S + SLI T I A F+GHL+GI
Sbjct: 225 LGYSGVLFGLLVISTFR--------YGIMS--SARTALYSLIITQIFNRNAHFIGHLAGI 274
Query: 190 IVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVTDPSLPSVRF 249
+ G I+ + + + S+L + ++ Y SG N LEI S +P S R
Sbjct: 275 VAGAIISASSYFKVFDLYFYSVL-ILTMILTYQNSSSG----NLLEILSSLNP-FQSRRR 328
Query: 250 IGNG 253
I NG
Sbjct: 329 IVNG 332
>gi|302837730|ref|XP_002950424.1| hypothetical protein VOLCADRAFT_117545 [Volvox carteri f.
nagariensis]
gi|300264429|gb|EFJ48625.1| hypothetical protein VOLCADRAFT_117545 [Volvox carteri f.
nagariensis]
Length = 353
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 18/172 (10%)
Query: 43 YETAVDGHHWRIITSAFSHISVLHLVFNMSAL-WSLGVVEQLGDVGLGTAYYLQYTLVLV 101
Y+T V+G WR+ITS F H+ HL FNMS+L W + L Y + +LV
Sbjct: 74 YQTRVEGQWWRLITSGFLHMDEWHLYFNMSSLVWK--------GIHLERRYGHKLFALLV 125
Query: 102 VLSGLLVLGIYHLL------IQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLF 155
LL G+Y L+ + + Y+ + AVG+S V+FG TIL P ++F
Sbjct: 126 AEMLLLSHGLYVLVTLLLCSVSEHRHIYYHQ-HAVGFSAVLFGLKTILMYNTPGYD-EIF 183
Query: 156 GFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYW 207
G + +P +A + L+ ++VP++SF+GHL GI+ G A L + +W
Sbjct: 184 G-VRVPTKYACWAELVLIWVLVPKSSFIGHLCGILAGGLHAQYLEPSLRRWW 234
>gi|66813132|ref|XP_640745.1| hypothetical protein DDB_G0281359 [Dictyostelium discoideum AX4]
gi|60468764|gb|EAL66765.1| hypothetical protein DDB_G0281359 [Dictyostelium discoideum AX4]
Length = 343
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 120/260 (46%), Gaps = 36/260 (13%)
Query: 14 ATSCIIGICSVIWFY--IQKKNIGYSHVGLSYETAVDG---HHWRIITSAFSHISVLHLV 68
AT I ICS+++ + G LS E+ + + +RII S F+H+S+ H+V
Sbjct: 39 ATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLSIYHIV 98
Query: 69 FNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVT 128
+NM L +E+L GT Y + +++ L+ L IY I R V
Sbjct: 99 YNMITFLDLAKLERLT---FGTLKYFYLLFLFGIITNLICLFIY--FIGR------NNVC 147
Query: 129 AVGYSCVVFGWMTILSVKQPSSKLDLFGF--LSLPISFAPFESLIFTSIIVPQASFLGHL 186
+G+S V+F ++ ++ SS D+F F + +P P+ LI + VP++SF+GH
Sbjct: 148 HLGFSGVLFA---LIYIESNSSGRDVFLFNAVKIPSKLYPWAMLILAHVFVPRSSFIGHF 204
Query: 187 SGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLEIESVTDPSLPS 246
SGI+VG L + G++ + + + K S + I + + P
Sbjct: 205 SGIVVG---------------ILFIKGYLDIFILSNQKLSEIESSQLMNIFTTKNSYFPI 249
Query: 247 VRFIGNGRTLQMSAIPVEGV 266
++F G+ R+ ++G+
Sbjct: 250 IKFGGSRRSYNTDRKSLDGL 269
>gi|428171532|gb|EKX40448.1| hypothetical protein GUITHDRAFT_75573, partial [Guillardia theta
CCMP2712]
Length = 186
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 16/155 (10%)
Query: 52 WRIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
+RI+TSAF H LHL FNM + +++ G +EQ+ +GT ++ +V V LVLG
Sbjct: 15 YRIVTSAFVHGGFLHLGFNMYNFVFAGGRLEQM----MGTVRFVNLIVVWV-----LVLG 65
Query: 111 IYHLLIQ----RFKLEYFRRVTAVGYSCVVFGWMTILSVKQP-SSKLDLFGFLSLPISFA 165
I + +I F+ F AVG+S V+F +T+ S P ++ +FG+ +P +
Sbjct: 66 ILYFVIAFVGALFQYARFWNECAVGFSGVLFAILTVDSFAAPLGTQFSMFGW-QIPARWY 124
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLI 200
P+ LIFT +++P SF+GHL GI+ + + GL+
Sbjct: 125 PWAMLIFTQVLMPNVSFIGHLVGILGAFVFSHGLL 159
>gi|325180697|emb|CCA15102.1| serine protease family S54 putative [Albugo laibachii Nc14]
Length = 295
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 16/154 (10%)
Query: 47 VDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLS 104
V H W R+I SAF H +HL NM S LW +E +G+ ++ + L+++S
Sbjct: 71 VRRHEWERLIGSAFFHGDDIHLYHNMVSFLWKGYQLES----KMGSYHFACLLIYLLLVS 126
Query: 105 -GLLVLGIYHLLIQRFKLEYFRRV---TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSL 160
GL+VL Y LI FKL++ ++G+S V+FG +L+ K P++ +++GF +
Sbjct: 127 HGLIVLASY--LI--FKLQHNPHAWTQCSLGFSAVLFGLKVVLNSKSPNTS-NIYGF-QV 180
Query: 161 PISFAPFESLIFTSIIVPQASFLGHLSGIIVGYA 194
P +A + L+ ++VP ASFLGHL GI+ GY+
Sbjct: 181 PTKYAAWLELVLIHVLVPDASFLGHLCGIVAGYS 214
>gi|412991448|emb|CCO16293.1| predicted protein [Bathycoccus prasinos]
Length = 388
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSA---LWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSG 105
G +RI TSAF+H S HL+ NM A + + G+ +LG V +L +T++
Sbjct: 64 GQFYRIFTSAFTHGSFFHLLVNMCAFIQIGAYGLEMKLGSVNFALLVFL-FTILCGTTHV 122
Query: 106 LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165
LL G+++LL + ++ AVG+S V+F + + + + D+FG +
Sbjct: 123 LLASGMWYLL----GMSGYQNECAVGFSGVIFSLVVLDTAFSNIRQRDVFGLFVVNAYMY 178
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192
PF + ++ P +SFLGHLSG++VG
Sbjct: 179 PFALIAIVQLLAPNSSFLGHLSGVVVG 205
>gi|159481362|ref|XP_001698748.1| hypothetical protein CHLREDRAFT_151844 [Chlamydomonas reinhardtii]
gi|158273459|gb|EDO99248.1| predicted protein [Chlamydomonas reinhardtii]
Length = 180
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 16/189 (8%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
MG L ++ PATS + + ++ +++ + + + V +SY+T V W +A
Sbjct: 1 MGESLPAMVLRHPATSAVNALLVGLFLWLRHRAVVPTAVAMSYQTVVAERQWWRALAA-- 58
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
H +LHLV N+S D+ + LQ ++L + L + L
Sbjct: 59 HFDLLHLVLNVST-----------DLQCAVLHGLQ--IMLALQHAALAAAVRSGLDGEAA 105
Query: 121 LEYFRRVTAVGYSCVVFGWMTILS-VKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQ 179
FR+ VGYS V+FG M ++ + +L G S+P+ APF T +I+P
Sbjct: 106 AASFRQRGVVGYSGVLFGQMAFIAWTAGSEGRFNLLGLTSVPMVLAPFLLAGLTQLIMPN 165
Query: 180 ASFLGHLSG 188
AS LGHLSG
Sbjct: 166 ASALGHLSG 174
>gi|410969603|ref|XP_003991284.1| PREDICTED: rhomboid-related protein 4 [Felis catus]
Length = 316
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ S LS ET W R++ S F H HL FNM S LW +E+
Sbjct: 39 IWFFLSPLKPLLSSC-LSVETCYQQKDWQRLLLSPFHHADDWHLYFNMASMLWKGINLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ + +L+G++ L + L + FRR AVG+S V+F +
Sbjct: 98 R----LGSKWFAYVIVTFSLLTGVVYLLLEFALAEFMNEPGFRRNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P ++ GF +P FA + L+ I P ASF GHL+GI+VG
Sbjct: 154 NNHYCPGGFANVLGF-PVPNRFACWAELVAIHFISPGASFAGHLAGILVG 202
>gi|255080710|ref|XP_002503928.1| predicted protein [Micromonas sp. RCC299]
gi|226519195|gb|ACO65186.1| predicted protein [Micromonas sp. RCC299]
Length = 232
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 13/149 (8%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGL 106
DG +R+ TS H SVLHL FNM A + +E+L LGT +Q+T +LV+ +
Sbjct: 56 DGQVYRMFTSVLFHGSVLHLAFNMMAFVPMASSLERL----LGT---VQFTYILVLFT-- 106
Query: 107 LVLGIYHLLIQRF--KLEY-FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
L+ I+H+ + L Y A+G+S V+FG + + + ++ +FGF ++P
Sbjct: 107 LLASIFHVGLAFIGGTLGYPSMHECAIGFSGVIFGVIVVDTHLSSVAQRSIFGFFTVPSQ 166
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P LIF +++P SF+GHLSG++ G
Sbjct: 167 WYPLSLLIFLQVLMPSVSFVGHLSGLLAG 195
>gi|393907597|gb|EJD74708.1| hypothetical protein LOAG_18018 [Loa loa]
Length = 314
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 7/149 (4%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
R++ S H+ +HL FNM S LW +E LG+ +L + + ++G+
Sbjct: 73 RMLASTVMHVDDMHLYFNMISLLWKGRRLEPW----LGSRRFLLLLATFALATSSTMVGL 128
Query: 112 YHLLIQRFKLEY--FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFES 169
+L + F + AVG+S V+F + + P S +LFG+L +P FA +
Sbjct: 129 SYLADEVFTFNGGGYMNQCAVGFSGVLFALKVLHTTHFPYSDHNLFGWLPIPSQFACWAE 188
Query: 170 LIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
LI ++ P ASF+GHLSGIIVG A G
Sbjct: 189 LILLQMLTPNASFIGHLSGIIVGLAYTMG 217
>gi|395528133|ref|XP_003766186.1| PREDICTED: rhomboid domain-containing protein 1 [Sarcophilus
harrisii]
Length = 344
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 16/196 (8%)
Query: 5 LFYEIME------KPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITS 57
LF++IM+ P T I + IW ++ Y + LS E+ + W R++ S
Sbjct: 15 LFFQIMQVGITNVPPVTLACIAL--NIWLFLNPLKPIYW-LCLSVESCYEKKDWQRLLLS 71
Query: 58 AFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
F H HL FNM S LW +E+ LG+ ++ V +L+G++ L + + +
Sbjct: 72 PFHHADDWHLYFNMVSMLWKGLTLER----RLGSFWFAYIIAVFSLLTGVVYLALEYTVA 127
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSII 176
+ F+ A+G+S V+F + + P ++ G + +P +A + L+ ++
Sbjct: 128 ELLDQREFKVYCAIGFSGVLFALKVLSNNYNPGGHTNIMG-MYIPNKYACWVELVMIHLL 186
Query: 177 VPQASFLGHLSGIIVG 192
P+ SF GHL+GIIVG
Sbjct: 187 SPRTSFAGHLAGIIVG 202
>gi|294460477|gb|ADE75816.1| unknown [Picea sitchensis]
Length = 410
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 111/246 (45%), Gaps = 40/246 (16%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
+RI TS H SVLH++FNM AL +G +E++ +G+ YL TL+L + +L L
Sbjct: 65 YRIYTSVVFHGSVLHVMFNMMALVPIGSGLERI----MGSVRYLHVTLLLATCNAVLHLL 120
Query: 111 IYHLLIQR--FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE 168
I +L +F +G+S ++F + + + + +FG ++P +
Sbjct: 121 IAYLAAHNPVHPYPFFMDECTIGFSGIIFAMIVMETSLNGNQSRSVFGLFNVPGKWYASI 180
Query: 169 SLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH----GMNNYWAL---SMLGWIV----- 216
LI +++P S LGHL GI+ G+A +GL + G+ +Y A+ +ML V
Sbjct: 181 LLILFQLLMPNVSLLGHLCGILSGFAYTYGLFNYFLLGLASYTAIESSAMLACCVRRPGF 240
Query: 217 -------------LVFVYSLKRSGTYDFN--------FLEIESVTDPSLPSVRFIGNGRT 255
L S SG N + E++ + SL RF G GRT
Sbjct: 241 IIGGASGAAATGSLPSFPSTASSGAGLGNVWRSARSLMPQRETLPNQSLQDPRFPGRGRT 300
Query: 256 LQMSAI 261
L S I
Sbjct: 301 LGSSQI 306
>gi|432103473|gb|ELK30578.1| Rhomboid domain-containing protein 1 [Myotis davidii]
Length = 313
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ YS LS E W R++ S F H HL FNM S LW +E+
Sbjct: 39 IWFFLSPLKPVYSSC-LSVEKCYQEKDWQRLLLSPFHHADDWHLYFNMVSMLWKGIHLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ +L+G++ L + + F+R AVG+S V+FG +
Sbjct: 98 R----LGSRWFAYVITTFSLLTGVVYLFLEFAFAECMGEPDFKRSCAVGFSGVLFGLKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P F+ + L+ +I P SF GHL+GI+VG
Sbjct: 154 NNHYFPGGFVNVLGF-PVPHKFSCWAELVAIHLITPGTSFAGHLAGILVG 202
>gi|168022284|ref|XP_001763670.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685163|gb|EDQ71560.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 214
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 7/146 (4%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
+R TS H S+LHLVFNM AL +G +E++ LG+ YL ++ + L+ +
Sbjct: 65 YRPYTSIVFHASILHLVFNMLALAPIGSGLERI----LGSVRYLHVLFIMATSNALIEVV 120
Query: 111 IYHLLIQRFKLEY--FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE 168
I +L Y +G+S V+F + + + P +FGF S+P + P+
Sbjct: 121 IAYLAAYNPVHPYPGLMYECGIGFSGVIFSMIVMETSLNPVQTRSVFGFFSVPAKWYPWA 180
Query: 169 SLIFTSIIVPQASFLGHLSGIIVGYA 194
L+ +++P+AS LGHL+GI+ G+A
Sbjct: 181 LLVLFQLLMPRASLLGHLAGILSGFA 206
>gi|149711182|ref|XP_001496461.1| PREDICTED: rhomboid domain-containing protein 1-like [Equus
caballus]
Length = 316
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IW ++ Y+ LS E W R++ S F H HL FNM S LW +E+
Sbjct: 39 IWLFLNPLKSLYNSC-LSVEKCYQQKDWQRLLLSPFHHADDWHLYFNMASMLWKGINLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ + +L+G++ L + L + FRR AVG+S V+F +
Sbjct: 98 R----LGSKWFAYIIITFSLLTGVVYLFLEFALAEFMDEPDFRRNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ I P SF GHL+GI+VG
Sbjct: 154 NNHYCPGGFVNVLGF-PVPNKFACWAELVAIHFISPGTSFAGHLAGILVG 202
>gi|16041108|dbj|BAB69721.1| hypothetical protein [Macaca fascicularis]
Length = 261
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 18/186 (9%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ + YS LS E W R++ S H + HL FNM S LW +E+
Sbjct: 39 IWFFLNPQKPLYSSC-LSVEKCCQQKDWQRLLLSPLHHANDWHLYFNMASMLWKGIHLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEY-----FRRVTAVGYSCVVF 137
LG+ ++ LV+ + ++ G+ +LL+Q E+ F+R AVG+S V+F
Sbjct: 98 R----LGSRWF-----ALVITTFSILTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLF 148
Query: 138 GWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
+ + P +++ GF +P FA + L+ + P SF GHL+GI+VG
Sbjct: 149 ALKVLNNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHLAGILVGLMYTQ 207
Query: 198 GLIHGM 203
G + M
Sbjct: 208 GPLKKM 213
>gi|109101279|ref|XP_001110165.1| PREDICTED: rhomboid domain-containing protein 1-like isoform 4
[Macaca mulatta]
gi|297265038|ref|XP_001110119.2| PREDICTED: rhomboid domain-containing protein 1-like isoform 3
[Macaca mulatta]
Length = 316
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 18/186 (9%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ + YS LS E W R++ S H + HL FNM S LW +E+
Sbjct: 39 IWFFLNPQKPLYSSC-LSVEKCCQQKDWQRLLLSPLHHANDWHLYFNMASMLWKGIHLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEY-----FRRVTAVGYSCVVF 137
LG+ ++ LV+ + ++ G+ +LL+Q E+ F+R AVG+S V+F
Sbjct: 98 R----LGSRWF-----ALVITTFSILTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLF 148
Query: 138 GWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
+ + P +++ GF +P FA + L+ + P SF GHL+GI+VG
Sbjct: 149 ALKVLNNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHLAGILVGLMYTQ 207
Query: 198 GLIHGM 203
G + M
Sbjct: 208 GPLKKM 213
>gi|355750890|gb|EHH55217.1| hypothetical protein EGM_04375 [Macaca fascicularis]
Length = 316
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 18/186 (9%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ + YS LS E W R++ S H + HL FNM S LW +E+
Sbjct: 39 IWFFLNPQKPLYSSC-LSVEKCCQQKDWQRLLLSPLHHANDWHLYFNMASMLWKGIHLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEY-----FRRVTAVGYSCVVF 137
LG+ ++ LV+ + ++ G+ +LL+Q E+ F+R AVG+S V+F
Sbjct: 98 R----LGSRWF-----ALVITTFSILTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLF 148
Query: 138 GWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
+ + P +++ GF +P FA + L+ + P SF GHL+GI+VG
Sbjct: 149 ALKVLNNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHLAGILVGLMYTQ 207
Query: 198 GLIHGM 203
G + M
Sbjct: 208 GPLKKM 213
>gi|402889541|ref|XP_003908071.1| PREDICTED: rhomboid domain-containing protein 1, partial [Papio
anubis]
Length = 285
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 86/181 (47%), Gaps = 8/181 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ + YS LS E W R++ S H + HL FNM S LW +E+
Sbjct: 39 IWFFLNPQKPLYSSC-LSVEKCCQQKDWQRLLLSPLHHANDWHLYFNMASMLWKGIHLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ VL+G++ L + + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAFVITTFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHG 202
+ P +++ GF +P FA + L+ + P SF GHL+GI+VG G +
Sbjct: 154 NNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHLAGILVGLMYTQGPLKK 212
Query: 203 M 203
M
Sbjct: 213 M 213
>gi|380817122|gb|AFE80435.1| rhomboid domain-containing protein 1 [Macaca mulatta]
gi|380817124|gb|AFE80436.1| rhomboid domain-containing protein 1 [Macaca mulatta]
gi|383422139|gb|AFH34283.1| rhomboid domain-containing protein 1 [Macaca mulatta]
gi|383422141|gb|AFH34284.1| rhomboid domain-containing protein 1 [Macaca mulatta]
gi|384949790|gb|AFI38500.1| rhomboid domain-containing protein 1 [Macaca mulatta]
gi|384949792|gb|AFI38501.1| rhomboid domain-containing protein 1 [Macaca mulatta]
Length = 316
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 18/186 (9%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ + YS LS E W R++ S H + HL FNM S LW +E+
Sbjct: 39 IWFFLNPQKPLYSSC-LSVEKCCQQKDWQRLLLSPLHHANDWHLYFNMASMLWKGIHLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEY-----FRRVTAVGYSCVVF 137
LG+ ++ LV+ + ++ G+ +LL+Q E+ F+R AVG+S V+F
Sbjct: 98 R----LGSRWF-----ALVITTFSILTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLF 148
Query: 138 GWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
+ + P +++ GF +P FA + L+ + P SF GHL+GI+VG
Sbjct: 149 ALKVLNNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHLAGILVGLMYTQ 207
Query: 198 GLIHGM 203
G + M
Sbjct: 208 GPLKKM 213
>gi|355565238|gb|EHH21727.1| hypothetical protein EGK_04857 [Macaca mulatta]
Length = 316
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 18/186 (9%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ + YS LS E W R++ S H + HL FNM S LW +E+
Sbjct: 39 IWFFLNPQKPLYSSC-LSVEKCCQQKDWQRLLLSPLHHANDWHLYFNMASMLWKGIHLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEY-----FRRVTAVGYSCVVF 137
LG+ ++ LV+ + ++ G+ +LL+Q E+ F+R AVG+S V+F
Sbjct: 98 R----LGSRWF-----ALVITTFSILTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLF 148
Query: 138 GWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
+ + P +++ GF +P FA + L+ + P SF GHL+GI+VG
Sbjct: 149 ALKVLNNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHLAGILVGLMYTQ 207
Query: 198 GLIHGM 203
G + M
Sbjct: 208 GPLKKM 213
>gi|330801370|ref|XP_003288701.1| hypothetical protein DICPUDRAFT_98105 [Dictyostelium purpureum]
gi|325081264|gb|EGC34786.1| hypothetical protein DICPUDRAFT_98105 [Dictyostelium purpureum]
Length = 382
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 14/155 (9%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL- 107
+ + IITS + HI++LH++FNM A LG +L GT LQ+ ++V+ S L+
Sbjct: 77 SNAYTIITSNYFHINILHILFNMLAFIPLG--SRLEKSKFGT---LQFFYLIVLFSILIP 131
Query: 108 ----VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
VL + L + Y+ +VG+S +VF + I + + L+G ++P
Sbjct: 132 LMTTVLSVIGLYTNITRFGYYS--CSVGFSGIVFSLLEIEFFED--RLVSLYGITNIPSK 187
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
PF L T +I P +SFLGHLSGI VG G
Sbjct: 188 LYPFAILFITYLIFPSSSFLGHLSGIFVGLLFVKG 222
>gi|296205750|ref|XP_002749971.1| PREDICTED: rhomboid domain-containing protein 1 [Callithrix
jacchus]
Length = 316
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ YS LS E + W R++ S F H HL FNM S LW +E+
Sbjct: 39 IWFFLNPLKSLYSSC-LSVEKCYQQNDWQRLLLSPFHHADDWHLYFNMASMLWKGINLEK 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ +++ +L+G++ L + + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFVCVITTFSILTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ + P SF GHL+GI+VG
Sbjct: 154 NNHYCPGGFVNVLGF-PVPNRFACWVELVAIHLCSPGTSFAGHLAGILVG 202
>gi|242001818|ref|XP_002435552.1| hypothetical protein IscW_ISCW006085 [Ixodes scapularis]
gi|215498888|gb|EEC08382.1| hypothetical protein IscW_ISCW006085 [Ixodes scapularis]
Length = 453
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
G WRI+ +AF H HL +NM + G+ + LG+AY+L + L+G+ +
Sbjct: 68 GQWWRILFAAFEHGDSFHLYYNMVSFIWKGIRM---ETELGSAYFLYIVCLFTGLTGVTL 124
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGF-LSLPISFAPF 167
+G+ +L F F AVG+S V+F + + P + G +S+P +
Sbjct: 125 VGLSYL-CGMFVNPSFNYQCAVGFSAVIFALKVLNNHYWPGISPTIMGMSVSMPSGLIVW 183
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYA 194
L+ ++ P ASFLGHL+GI+VG A
Sbjct: 184 AELVLIQLVTPNASFLGHLAGILVGLA 210
>gi|440800861|gb|ELR21891.1| peptidase, S54 (rhomboid) subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 342
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
+R++T+ F H+ LH+V NM A +L + +G+ + ++ V+S L+ +
Sbjct: 62 YRLLTAGFFHVGFLHVVMNMLAFQALAPSL---ERAMGSFTFSYLVVLFQVVSSLMNTFL 118
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
+L + +G S V+F ++ + S S + LFGF+S+P + P+ L+
Sbjct: 119 SLVLYKTGAYPDAWNQCTIGLSSVLFSFLVLRSHLHQSHNMSLFGFVSVPAQWYPWVLLV 178
Query: 172 FTSIIVPQASFLGHLSGIIVGYAIAWG 198
++P+ SFLGHL+GI+V Y WG
Sbjct: 179 LFQFLMPEVSFLGHLTGILVAYLHVWG 205
>gi|71682851|gb|AAI01263.1| Rhomboid domain containing 1 [Homo sapiens]
Length = 315
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ + YS LS E W R++ S H HL FNM S LW +E+
Sbjct: 39 IWFFLNPQKPLYSSC-LSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ VL+G++ L + + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYVITAFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ + P SF GHL+GI+VG
Sbjct: 154 NNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHLAGILVG 202
>gi|397502459|ref|XP_003821875.1| PREDICTED: rhomboid domain-containing protein 1 [Pan paniscus]
Length = 315
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ + YS LS E W R++ S H HL FNM S LW +E+
Sbjct: 39 IWFFLNPQKPLYSSC-LSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ VL+G++ L + + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYVITTFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ + P SF GHL+GI+VG
Sbjct: 154 NNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHLAGILVG 202
>gi|332251234|ref|XP_003274752.1| PREDICTED: uncharacterized protein LOC100579431 isoform 1 [Nomascus
leucogenys]
gi|332251236|ref|XP_003274753.1| PREDICTED: uncharacterized protein LOC100579431 isoform 2 [Nomascus
leucogenys]
Length = 316
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ + YS LS E W R++ S H HL FNM S LW +E+
Sbjct: 39 IWFFLNPQKPLYSSC-LSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ VL+G++ L + + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYVISTFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ ++ P SF GHL+GI+VG
Sbjct: 154 NNHYCPGGFVNILGF-PVPNRFACWVELVAIHLLSPGTSFAGHLAGILVG 202
>gi|410036272|ref|XP_003950028.1| PREDICTED: rhomboid-related protein 4 [Pan troglodytes]
gi|410211256|gb|JAA02847.1| rhomboid domain containing 1 [Pan troglodytes]
gi|410266108|gb|JAA21020.1| rhomboid domain containing 1 [Pan troglodytes]
gi|410301220|gb|JAA29210.1| rhomboid domain containing 1 [Pan troglodytes]
gi|410339123|gb|JAA38508.1| rhomboid domain containing 1 [Pan troglodytes]
Length = 315
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ + YS LS E W R++ S H HL FNM S LW +E+
Sbjct: 39 IWFFLNPQKPLYSSC-LSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ VL+G++ L + + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYVITTFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ + P SF GHL+GI+VG
Sbjct: 154 NNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHLAGILVG 202
>gi|33300639|ref|NP_115652.2| rhomboid-related protein 4 [Homo sapiens]
gi|263190666|ref|NP_001161080.1| rhomboid-related protein 4 [Homo sapiens]
gi|74723955|sp|Q8TEB9.1|RHBL4_HUMAN RecName: Full=Rhomboid-related protein 4; Short=RRP4; AltName:
Full=Rhomboid domain-containing protein 1; AltName:
Full=Rhomboid-like protein 4
gi|18676811|dbj|BAB85031.1| unnamed protein product [Homo sapiens]
gi|51947534|gb|AAU14246.1| HSD-50 [Homo sapiens]
gi|71680537|gb|AAI01265.1| Rhomboid domain containing 1 [Homo sapiens]
gi|71682034|gb|AAI01264.1| Rhomboid domain containing 1 [Homo sapiens]
gi|71682037|gb|AAI01266.1| Rhomboid domain containing 1 [Homo sapiens]
gi|83405869|gb|AAI11057.1| Rhomboid domain containing 1 [Homo sapiens]
gi|119591247|gb|EAW70841.1| rhomboid domain containing 1, isoform CRA_a [Homo sapiens]
gi|119591248|gb|EAW70842.1| rhomboid domain containing 1, isoform CRA_a [Homo sapiens]
Length = 315
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ + YS LS E W R++ S H HL FNM S LW +E+
Sbjct: 39 IWFFLNPQKPLYSSC-LSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ VL+G++ L + + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYVITAFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ + P SF GHL+GI+VG
Sbjct: 154 NNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHLAGILVG 202
>gi|260796227|ref|XP_002593106.1| hypothetical protein BRAFLDRAFT_120182 [Branchiostoma floridae]
gi|229278330|gb|EEN49117.1| hypothetical protein BRAFLDRAFT_120182 [Branchiostoma floridae]
Length = 297
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)
Query: 49 GHHW-RIITSAFSHISVLHLVFNMSA-LWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
G W R+I +AF H HL +NM++ +W +E+ +G+ +L V V +
Sbjct: 59 GEDWKRLIYAAFFHADEWHLYYNMASFMWKGITLERR----MGSVRFLYVLAVFTVCTHS 114
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
L+LG+ + + F + AVG+S V+F + + P + G+ +P A
Sbjct: 115 LLLGLNYSMDHFFHQSSYLADCAVGFSGVIFALKVLTTHYLPPGMTYVMGWFPVPRRIAC 174
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVG 192
+ L+ I++P+ASF+GHLSGI+VG
Sbjct: 175 WVELVVIQILIPRASFMGHLSGILVG 200
>gi|426338762|ref|XP_004033341.1| PREDICTED: rhomboid-related protein 4 [Gorilla gorilla gorilla]
Length = 315
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ + YS LS E W R++ S H HL FNM S LW +E+
Sbjct: 39 IWFFLNPQKPLYSSC-LSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ VL+G++ L + + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYVITTFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ + P SF GHL+GI+VG
Sbjct: 154 NNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHLAGILVG 202
>gi|334347379|ref|XP_001373833.2| PREDICTED: rhomboid domain-containing protein 1-like [Monodelphis
domestica]
Length = 336
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Query: 39 VGLSYETAVDGHHW-RIITSAFSHISVLHLVFNMSAL-WSLGVVEQLGDVGLGTAYYLQY 96
V LS E+ + W R++ S F H+ HL FNM++L W +E+ LG+ ++
Sbjct: 52 VCLSVESCYEKKDWQRLLLSPFHHVDDWHLYFNMASLLWKGLTLER----RLGSFWFAYV 107
Query: 97 TLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFG 156
V +L G++ L + + L + ++ +G+S V+F + + P ++ G
Sbjct: 108 ISVFSILIGVIYLALEYSLAELLDQPEYKMHCTIGFSGVLFALKVLNNNYNPGGHTNIMG 167
Query: 157 FLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
L +P +A + L+ ++ P+ SF GHL+GIIVG
Sbjct: 168 -LYIPNKYACWMELLMIHLLTPKTSFAGHLAGIIVG 202
>gi|198416524|ref|XP_002119628.1| PREDICTED: similar to rhomboid domain containing 1 [Ciona
intestinalis]
Length = 333
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 13/176 (7%)
Query: 51 HWRIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVL 109
+WRI+ + F H HL +NM S LW +E+ +G+ +L V VL ++L
Sbjct: 79 YWRIVEATFHHGGDWHLYYNMISFLWKGRSLER----KIGSKRFLYMIAVFSVLVNYVML 134
Query: 110 GIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFES 169
+ + F+ + A+G+S VVF + + + L GF+ + + +
Sbjct: 135 WLNYGAANVFRDGSYINQCAIGFSGVVFAVKVVTTQLMEPGTVLLLGFIPVNSRLSCWFE 194
Query: 170 LIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKR 225
LI ++VP ASF GHL+GI+VG A G + ++ W +LVF S +R
Sbjct: 195 LILIQVLVPNASFTGHLAGILVGLAYVKGPLK--------RIMEWPLLVFGRSNRR 242
>gi|330798987|ref|XP_003287530.1| hypothetical protein DICPUDRAFT_78374 [Dictyostelium purpureum]
gi|325082476|gb|EGC35957.1| hypothetical protein DICPUDRAFT_78374 [Dictyostelium purpureum]
Length = 196
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 33/203 (16%)
Query: 3 RPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHH-WRIITSAFSH 61
L +I + P T II I IW Y +I + + Y ++ WRII S+FSH
Sbjct: 8 NELVNQIKQTPITIFIIIINLCIWVYHYAYDIDVTIISFHYNEIINKKQFWRIIFSSFSH 67
Query: 62 ISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKL 121
++ +H +FN ++WS +E V G+ YY T++LV+ + +L L +L
Sbjct: 68 LNFIHFIFNSISIWSSKEIE----VVKGSYYYFICTILLVLFTNILFL---------LEL 114
Query: 122 EYFRRVTA------------VGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFES 169
F++ +GYSC+ FG M +++++ S L G + ISF PF S
Sbjct: 115 YIFKKANGKQNPQLGENNHYLGYSCIAFGLM-VVNIRLIS----LNG--NEIISFLPFLS 167
Query: 170 LIFTSIIVPQASFLGHLSGIIVG 192
L+++SII+ +S +GHL+GI V
Sbjct: 168 LLYSSIIIKSSSIIGHLNGITVD 190
>gi|344257225|gb|EGW13329.1| Rhomboid domain-containing protein 1 [Cricetulus griseus]
Length = 298
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 10/177 (5%)
Query: 25 IWFYIQK-KNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVE 81
IWF++ K + YS + S E W R++ S H HL FNM S LW +E
Sbjct: 39 IWFFLNPLKPLYYSCI--SVEKCYQQKDWQRLLLSPLHHADDWHLYFNMVSMLWKGIKLE 96
Query: 82 QLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMT 141
+ LGT ++ +L+G++ L + L + FRR AVG+S V+F
Sbjct: 97 R----RLGTRWFAYLLTTFSLLTGVVYLVLQFTLAELMNQPDFRRNCAVGFSGVLFALKV 152
Query: 142 ILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
+ + P +++ GFL +P A + L+ P SF GHL+GI+VG G
Sbjct: 153 LSNHYFPGGFVNVLGFL-VPNRLACWAELVAIHFCTPGTSFAGHLAGILVGLMYTQG 208
>gi|354501643|ref|XP_003512899.1| PREDICTED: rhomboid domain-containing protein 1-like [Cricetulus
griseus]
Length = 307
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 10/171 (5%)
Query: 25 IWFYIQK-KNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVE 81
IWF++ K + YS + S E W R++ S H HL FNM S LW +E
Sbjct: 39 IWFFLNPLKPLYYSCI--SVEKCYQQKDWQRLLLSPLHHADDWHLYFNMVSMLWKGIKLE 96
Query: 82 QLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMT 141
+ LGT ++ +L+G++ L + L + FRR AVG+S V+F
Sbjct: 97 RR----LGTRWFAYLLTTFSLLTGVVYLVLQFTLAELMNQPDFRRNCAVGFSGVLFALKV 152
Query: 142 ILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ + P +++ GFL +P A + L+ P SF GHL+GI+VG
Sbjct: 153 LSNHYFPGGFVNVLGFL-VPNRLACWAELVAIHFCTPGTSFAGHLAGILVG 202
>gi|403374294|gb|EJY87090.1| hypothetical protein OXYTRI_06350 [Oxytricha trifallax]
Length = 256
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 13/154 (8%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
+RI+TS FSH +V H+ FNM L GV VE+ GT YY L+++S +L L
Sbjct: 22 YRIVTSEFSHGNVAHIFFNMCGLLVFGVEVEKT----YGTLYYAMINFWLMMISNILSLA 77
Query: 111 IYHLLIQRFKLEYFRRVT------AVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
+ L+ EY R T VGYS ++FG I + K + + + G +
Sbjct: 78 FFMLMAFVIPEEY-RGGTQNFFYCGVGYSNILFGLSIIFAYKGDTQQ-NFMGLCKFEKKY 135
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
P+ +I + +SF+GH G+I G I +G
Sbjct: 136 VPWFYMILIFFTIENSSFIGHFLGMITGLLIKFG 169
>gi|417414315|gb|JAA53453.1| Putative rhomboid domain-containing protein 1, partial [Desmodus
rotundus]
Length = 287
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 83/170 (48%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ S LS ET W R++ S F H HL FNM S LW +E+
Sbjct: 39 IWFFLSPLKPLLSSC-LSVETCYQEKDWQRLLLSPFHHADDWHLYFNMVSMLWKGIQLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ +L+G++ L + L + + F+ AVG+S V+F +
Sbjct: 98 R----LGSRWFAYVITTFSLLTGVVYLVLESALAEFMEEPGFKMNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ +I P SF GHL+GI+VG
Sbjct: 154 SNHYCPGGFVNVLGF-PVPNRFACWAELVAIHLISPGTSFAGHLAGILVG 202
>gi|290999042|ref|XP_002682089.1| rhomboid domain-containing protein [Naegleria gruberi]
gi|284095715|gb|EFC49345.1| rhomboid domain-containing protein [Naegleria gruberi]
Length = 368
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 21/156 (13%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
W++ T F H S+ H++FNM AL+ G + LGT Y+ +L +++ + + I
Sbjct: 125 WQLFTFPFFHGSITHILFNMLALYQFG---NRIESTLGTIYFFFISLFMIIFGSAVWVAI 181
Query: 112 YHLLIQRF----KLEYFRRVTAVGYSCVVFGWMTILSVKQ--------PSSKLDLFGFLS 159
L IQ F L + VGYS V+FG++ + +V+ P + D F
Sbjct: 182 DALFIQGFGAGQTLSFLLDRCTVGYSGVLFGYL-VFTVQYRPLFEQLYPGANADDFA--- 237
Query: 160 LPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAI 195
P+ LI TS+++P S +GHL+G+I GY I
Sbjct: 238 --PKLIPWLMLIVTSLLMPNVSLMGHLTGMISGYLI 271
>gi|156351056|ref|XP_001622342.1| predicted protein [Nematostella vectensis]
gi|156208856|gb|EDO30242.1| predicted protein [Nematostella vectensis]
Length = 321
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 5/145 (3%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSA-LWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
G R+ + F H+ HL +NM++ LW +E LG+ +L V VL+ ++
Sbjct: 65 GDWLRLALAPFFHLDDWHLYYNMASFLWKGKSLE----TKLGSGMFLYLLAVFSVLTSVV 120
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
++G+ L + A G+S V+F + + + PS + G +P+ +A +
Sbjct: 121 LVGLDIFLANVTGDSSYLYSCAAGFSGVIFALKVLTTYELPSGVSMVMGMFPIPVRYACW 180
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVG 192
LI ++VP ASF GHL+GIIVG
Sbjct: 181 AELILIQLMVPNASFTGHLAGIIVG 205
>gi|73994096|ref|XP_543275.2| PREDICTED: rhomboid domain-containing protein 1 [Canis lupus
familiaris]
Length = 316
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
+WF++ Y LS E W R++ S H HL FNM S LW +E+
Sbjct: 39 VWFFLNPLKPLYESC-LSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ + +L+G++ L + L + FRR AVG+S V+F +
Sbjct: 98 R----LGSRWFAYIIVTFSLLTGVVYLFLEFALAEFTDEPGFRRNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P ++ GF +P FA + L+ I P SF GHL+GI+VG
Sbjct: 154 NNHYCPGGFANILGF-PVPNRFACWAELVAIHFISPGTSFAGHLAGILVG 202
>gi|429239375|ref|NP_588499.2| rhomboid family protease [Schizosaccharomyces pombe 972h-]
gi|395398460|sp|O74926.2|RBD2_SCHPO RecName: Full=Rhomboid protein 2
gi|347834486|emb|CAA21293.2| rhomboid family protease [Schizosaccharomyces pombe]
Length = 251
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 8/148 (5%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
+ IIT H+S+LH+VFN +L L + Q A L + + G++ L +
Sbjct: 57 YEIITYVTLHLSMLHIVFNFVSL--LPAMSQFEKKQGTLACILVTVIPYTLFPGIMHLIV 114
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
YH +++ +Y V+ G S F +++ V P + F S+P P LI
Sbjct: 115 YHFFLRK---DY---VSIAGLSGWAFAFISASCVHSPQRLISFFNLFSIPAYCFPIIYLI 168
Query: 172 FTSIIVPQASFLGHLSGIIVGYAIAWGL 199
T+I+VP+ASF+GH SG ++GY + L
Sbjct: 169 MTTILVPKASFIGHASGAVMGYCTPFML 196
>gi|281342330|gb|EFB17914.1| hypothetical protein PANDA_008422 [Ailuropoda melanoleuca]
Length = 286
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 41 LSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTL 98
LS E W R++ S H HL FNM S LW +E+ LG+ ++ +
Sbjct: 54 LSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERR----LGSRWFAYIIV 109
Query: 99 VLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL 158
VL+G++ L + L + FRR AVG+S V+F + + P ++ GF
Sbjct: 110 TFSVLTGVVYLFLEFALAESMGEPGFRRNCAVGFSGVLFALKVLNNHYCPGGFANVLGF- 168
Query: 159 SLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+P FA + L+ I P SF GHL+GI+VG
Sbjct: 169 PVPNRFACWAELVAIHFISPGTSFAGHLAGILVG 202
>gi|148237462|ref|NP_001087563.1| rhomboid domain containing 1 [Xenopus laevis]
gi|51258484|gb|AAH80107.1| MGC84665 protein [Xenopus laevis]
Length = 306
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 7/146 (4%)
Query: 49 GHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
G W R + S F H HL FNM S LW +E+ LGT + LV L G+
Sbjct: 62 GRDWQRFLLSPFHHADDWHLYFNMVSLLWKGAKLERR----LGTGLFASIILVFSQLIGV 117
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
+ + + ++L + F+ AVG+S V+F + + P ++FG L +P +A
Sbjct: 118 VYVILEYVLAEFTGDPSFKMQCAVGFSGVLFALKVLNNHYHPGGSSNVFGIL-IPNKYAC 176
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVG 192
+ L+ ++ P SF+GHLSGI+VG
Sbjct: 177 WAELVAIHLLSPGTSFVGHLSGILVG 202
>gi|403266722|ref|XP_003925512.1| PREDICTED: rhomboid domain-containing protein 1 [Saimiri
boliviensis boliviensis]
Length = 315
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ YS LS E + W R++ S H HL FNM S LW +E+
Sbjct: 39 IWFFLNPLKSLYSSC-LSVERCYQQNDWQRLLLSPVHHADDWHLYFNMASMLWKGIHLEK 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ VL+G++ L + + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFACVITTFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ + P SF GHL+GI+VG
Sbjct: 154 NNHYCPGGFVNVLGF-PVPNRFACWVELVAIHLCSPGTSFAGHLAGILVG 202
>gi|148670186|gb|EDL02133.1| rhomboid domain containing 1, isoform CRA_b [Mus musculus]
Length = 296
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
+WF++ Y H +S E W R++ S H HL FNM S LW +E+
Sbjct: 39 VWFFLNPWKPLY-HSCISVEKCYQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWKGVKLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ +L+G++ L + + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYVIATFSLLTGVVYLLLQFTVAELLNQPDFKRNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ P SF GHL+GI+VG
Sbjct: 154 SNHYCPGGFVNILGF-PVPNRFACWAELVAIHFCTPGTSFAGHLAGILVG 202
>gi|196000606|ref|XP_002110171.1| hypothetical protein TRIADDRAFT_53891 [Trichoplax adhaerens]
gi|190588295|gb|EDV28337.1| hypothetical protein TRIADDRAFT_53891 [Trichoplax adhaerens]
Length = 348
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 7/144 (4%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
R+I AF H S +HL +NM S LW +E+ G+ ++L + L+ + ++ I
Sbjct: 72 RLILGAFFHASDMHLYYNMVSFLWKGIHLEK----KYGSLHFLSMIISFTALTNVTLVAI 127
Query: 112 -YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESL 170
Y + KL YF AVG+S V+F + + P S + + + +A + L
Sbjct: 128 SYAIGHHTDKLHYFTDC-AVGFSGVIFALKVVATYVSPPSTNYIMNLIPISSRYACWAEL 186
Query: 171 IFTSIIVPQASFLGHLSGIIVGYA 194
+ ++VP +SFLGHL+GI+VG A
Sbjct: 187 VLIQVLVPNSSFLGHLAGILVGLA 210
>gi|301768701|ref|XP_002919769.1| PREDICTED: rhomboid domain-containing protein 1-like [Ailuropoda
melanoleuca]
Length = 316
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 41 LSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTL 98
LS E W R++ S H HL FNM S LW +E+ LG+ ++ +
Sbjct: 54 LSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLERR----LGSRWFAYIIV 109
Query: 99 VLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL 158
VL+G++ L + L + FRR AVG+S V+F + + P ++ GF
Sbjct: 110 TFSVLTGVVYLFLEFALAESMGEPGFRRNCAVGFSGVLFALKVLNNHYCPGGFANVLGF- 168
Query: 159 SLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+P FA + L+ I P SF GHL+GI+VG
Sbjct: 169 PVPNRFACWAELVAIHFISPGTSFAGHLAGILVG 202
>gi|13529623|gb|AAH05518.1| Rhomboid domain containing 1 [Mus musculus]
Length = 315
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
+WF++ Y H +S E W R++ S H HL FNM S LW +E+
Sbjct: 39 VWFFLNPWKPLY-HSCISVEKCYQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWKGVKLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ +L+G++ L + + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYVIATFSLLTGVVYLLLQFTVAELMNQPDFKRNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ P SF GHL+GI+VG
Sbjct: 154 SNHYCPGGFVNILGF-PVPNRFACWAELVAIHFCTPGTSFAGHLAGILVG 202
>gi|281204487|gb|EFA78682.1| methionyl-tRNA synthetase beta subunit [Polysphondylium pallidum
PN500]
Length = 400
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 21/164 (12%)
Query: 42 SYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLV 101
S T + ++ + SAF+H +LH++FNMS+ L +E T VLV
Sbjct: 89 SSPTNILDLNFSKLASAFTHSGILHILFNMSSFIQLKSLES--------------TNVLV 134
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRV--TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLS 159
L + LI L Y + +VG S V+F + I S +LF +
Sbjct: 135 SLMSFAI----AFLISYPPLNYMNSLYTCSVGLSGVIFALLEIQCYGSIHST-NLFAQIQ 189
Query: 160 LPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGM 203
+P+ P+ +L+ ++P SF+GHLSGII+G+ A GL+ +
Sbjct: 190 IPLKLYPWAALLLAQFLMPNVSFIGHLSGIIIGFLYAIGLLDAL 233
>gi|12853402|dbj|BAB29735.1| unnamed protein product [Mus musculus]
Length = 315
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
+WF++ Y H +S E W R++ S H HL FNM S LW +E+
Sbjct: 39 VWFFLNPWKPLY-HSCISVEKCYQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWKGVKLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ +L+G++ L + + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYVIATFSLLTGVVYLLLQFTVAELLNQPDFKRNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ P SF GHL+GI+VG
Sbjct: 154 SNHYCPGGFVNILGF-PVPNRFACWAELVAIHFCTPGTSFAGHLAGILVG 202
>gi|170014730|ref|NP_084053.3| rhomboid-related protein 4 [Mus musculus]
gi|170014732|ref|NP_001116157.1| rhomboid-related protein 4 [Mus musculus]
gi|81896101|sp|Q8BHC7.1|RHBL4_MOUSE RecName: Full=Rhomboid-related protein 4; Short=RRP4; AltName:
Full=Rhomboid domain-containing protein 1;
Short=mRHBDD1; AltName: Full=Rhomboid-like protein 4
gi|26325686|dbj|BAC26597.1| unnamed protein product [Mus musculus]
gi|26345628|dbj|BAC36465.1| unnamed protein product [Mus musculus]
gi|26347997|dbj|BAC37647.1| unnamed protein product [Mus musculus]
gi|64213941|gb|AAY41235.1| MSD-50 [Mus musculus]
gi|74209284|dbj|BAE25005.1| unnamed protein product [Mus musculus]
gi|148670185|gb|EDL02132.1| rhomboid domain containing 1, isoform CRA_a [Mus musculus]
gi|148670187|gb|EDL02134.1| rhomboid domain containing 1, isoform CRA_a [Mus musculus]
Length = 315
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
+WF++ Y H +S E W R++ S H HL FNM S LW +E+
Sbjct: 39 VWFFLNPWKPLY-HSCISVEKCYQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWKGVKLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ +L+G++ L + + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYVIATFSLLTGVVYLLLQFTVAELLNQPDFKRNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ P SF GHL+GI+VG
Sbjct: 154 SNHYCPGGFVNILGF-PVPNRFACWAELVAIHFCTPGTSFAGHLAGILVG 202
>gi|302776366|ref|XP_002971354.1| hypothetical protein SELMODRAFT_147697 [Selaginella moellendorffii]
gi|300161336|gb|EFJ27952.1| hypothetical protein SELMODRAFT_147697 [Selaginella moellendorffii]
Length = 413
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 21/189 (11%)
Query: 25 IWFYIQKKNIGYSH---VGLSYETAVDGHH-WRIITSAFSHISVLHLVFNMSALWSLGV- 79
+ YI IGY + V S ++ + +R IT+ H S+LH++FNM AL +G
Sbjct: 34 VAIYIVDLLIGYDNFQQVCFSTDSVIGNFQVYRAITAVLFHASLLHVLFNMLALVPIGSS 93
Query: 80 VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQ---RFKLEYFRRV----TAVGY 132
+E++ +G+ YL L+L V + ++ H+LI + Y + +G+
Sbjct: 94 LERI----MGSVRYLHVILLLAVSNAVI-----HILIAYIVAYNPIYVHKSVLMECQIGF 144
Query: 133 SCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
S ++F + I +FG ++P + P+ LI +I+P+ S LGHLSGI+ G
Sbjct: 145 SGILFAMIVIEGSLYTGQNRSIFGLFNVPAKWYPWVLLIIFQMIMPRVSLLGHLSGILSG 204
Query: 193 YAIAWGLIH 201
+A ++GL +
Sbjct: 205 FAYSYGLFN 213
>gi|242006593|ref|XP_002424134.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212507451|gb|EEB11396.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 236
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 12/144 (8%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIY 112
R+ SA H +HL +NM++ G L Y + ++++ +L GIY
Sbjct: 72 RLFLSALEHGDDMHLYYNMASFLIKGR-------SLEKRYGSKCFAIILIFLTILTSGIY 124
Query: 113 HLLIQR----FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE 168
LL Q F+ + + + A+G+S V+F + + ++PS + L G + +P +A +
Sbjct: 125 VLLAQAMSEVFENDSYMKSCAIGFSGVIFALKVLTTHEEPSLRATLVG-VQIPGKYAAWI 183
Query: 169 SLIFTSIIVPQASFLGHLSGIIVG 192
LI ++VP +SF+GHL+GI+ G
Sbjct: 184 ELILIHLLVPNSSFMGHLAGILAG 207
>gi|224091513|ref|XP_002309277.1| predicted protein [Populus trichocarpa]
gi|222855253|gb|EEE92800.1| predicted protein [Populus trichocarpa]
Length = 410
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 31/219 (14%)
Query: 15 TSCIIGICSVIWFYIQKKNIGYSHVGLSYE-----TAVDGHH--WRIITSAFSHISVLHL 67
TS ++ +C VI Y+ IGY YE TAV H +RI TS F H S+LH+
Sbjct: 26 TSAVVVVCGVI--YLVCLLIGYDSF---YEICFLPTAVVSHFQVYRIYTSIFFHGSLLHV 80
Query: 68 VFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF-------K 120
+FNM AL LG +L + +G+ L Y ++L+ + I+HL I
Sbjct: 81 LFNMLALVPLG--SELERI-MGS-IRLAYLIILLATTN----AIFHLFIALLVAHNPFHP 132
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
+Y A+G+S ++F + I + +FG ++P + F L+ +++
Sbjct: 133 YQYLLDECAIGFSGILFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFILLVAFQLLMTNV 192
Query: 181 SFLGHLSGIIVGYAIAWGLIH----GMNNYWALSMLGWI 215
S LGHL GI+ G+A +GL + G +++ A+ W+
Sbjct: 193 SLLGHLCGILSGFAYTYGLFNFLMPGASSFSAIEASSWL 231
>gi|302756069|ref|XP_002961458.1| hypothetical protein SELMODRAFT_140420 [Selaginella moellendorffii]
gi|300170117|gb|EFJ36718.1| hypothetical protein SELMODRAFT_140420 [Selaginella moellendorffii]
Length = 413
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 95/189 (50%), Gaps = 21/189 (11%)
Query: 25 IWFYIQKKNIGYS---HVGLSYETAVDGHH-WRIITSAFSHISVLHLVFNMSALWSLGV- 79
+ YI IGY V S +T + +R IT+ H S+LH++FNM AL +G
Sbjct: 34 VAIYIVDLLIGYDTFQQVCFSTDTVIGNFQVYRAITAVLFHASLLHVLFNMLALVPIGSS 93
Query: 80 VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQ---RFKLEYFRRV----TAVGY 132
+E++ +G+ YL L+L V + ++ H+LI + Y + +G+
Sbjct: 94 LERV----MGSVRYLHVILLLAVSNAVI-----HILIAYIVAYNPIYVHKSVLMECQIGF 144
Query: 133 SCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
S ++F + I +FG ++P + P+ LI +I+P+ S LGHLSGI+ G
Sbjct: 145 SGILFAMIVIEGSLYTGQNRSIFGLFNVPAKWYPWVLLIIFQMIMPRVSLLGHLSGILSG 204
Query: 193 YAIAWGLIH 201
++ ++GL +
Sbjct: 205 FSYSYGLFN 213
>gi|324513372|gb|ADY45497.1| Rhomboid domain-containing protein 1 [Ascaris suum]
Length = 331
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
R++ S H +HL +NM S LW +E+ LG+ +L LV V S ++ +
Sbjct: 71 RMLASVVMHGDDMHLYYNMISLLWKGRRLERR----LGSWRFLLILLVFAVASSCGIVAL 126
Query: 112 YHLLIQRFKLEYFR--RVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFES 169
L F L Y AVG+S V+F + + P L G++ +P +A +
Sbjct: 127 SVLATDVFHLHYLALMHQCAVGFSGVLFALKVLHTTYFPYEDSMLLGWMPIPSRYACWAE 186
Query: 170 LIFTSIIVPQASFLGHLSGIIVG 192
L+ + P+ASF+GHLSGI+VG
Sbjct: 187 LLLIQFLAPEASFIGHLSGILVG 209
>gi|356570925|ref|XP_003553633.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
At3g58460-like [Glycine max]
Length = 415
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 7/153 (4%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
+RI TS H S+LH+VFNM AL LG +L + +G+ L Y ++LV S + +
Sbjct: 71 YRIYTSILFHGSLLHVVFNMMALVPLG--SELERI-MGSVRLL-YVIILVATSNAIFHVL 126
Query: 112 YHLLIQRFKL---EYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE 168
LL+ L +Y A+G+S V+F + I + +FG ++P + F
Sbjct: 127 IALLVAHNPLLTYDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFF 186
Query: 169 SLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
L+ +++ S LGHL GI+ G+A +GL +
Sbjct: 187 LLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFN 219
>gi|299473184|emb|CBN78760.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 317
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 8/187 (4%)
Query: 14 ATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSA 73
AT CII V F NIG ++V + G ++R+IT A H ++H+VFNM +
Sbjct: 21 ATLCIILQGCVFVF---NTNIG-NYVLIPSRIIYLGEYYRVITGALLHGGLMHIVFNMMS 76
Query: 74 LWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI-YHLLIQRFKLEYFRRVTAVGY 132
S+G + V GT L L ++L+G++ G + + + + +VG+
Sbjct: 77 FLSIGSSLE---VAFGTLSLLFTILWSMILAGVVHCGAEWVMTVWVTHDPTYVNQPSVGF 133
Query: 133 SCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
S V+F + S + +FG + +P P+ L+ S+ + SF+GHLSGI+VG
Sbjct: 134 SGVIFTLALMESYRSTQPTRSVFGMMRVPTRMYPWVLLVLLSVFMRDISFVGHLSGILVG 193
Query: 193 YAIAWGL 199
+GL
Sbjct: 194 VMHVYGL 200
>gi|356505467|ref|XP_003521512.1| PREDICTED: uncharacterized protein At3g58460-like [Glycine max]
Length = 414
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 7/153 (4%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
+RI TS H S+LH+VFNM AL LG +L + +G+ L Y ++LV S + +
Sbjct: 71 YRIYTSILFHGSLLHVVFNMMALVPLG--SELERI-MGSVRLL-YVIILVATSNAIFHVL 126
Query: 112 YHLLIQRFKL---EYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE 168
LL+ L +Y A+G+S V+F + I + +FG ++P + F
Sbjct: 127 IALLVAHNPLLTYDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFF 186
Query: 169 SLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
L+ +++ S LGHL GI+ G+A +GL +
Sbjct: 187 LLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFN 219
>gi|197097614|ref|NP_001125444.1| rhomboid-related protein 4 [Pongo abelii]
gi|75042072|sp|Q5RBS4.1|RHBL4_PONAB RecName: Full=Rhomboid-related protein 4; Short=RRP4; AltName:
Full=Rhomboid domain-containing protein 1; AltName:
Full=Rhomboid-like protein 4
gi|55728068|emb|CAH90786.1| hypothetical protein [Pongo abelii]
Length = 318
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ + YS LS E W R++ S H HL FN S LW +E+
Sbjct: 39 IWFFLNPQKPLYSSC-LSVEKCYQQRDWQRLLLSPLHHADDWHLYFNTASVLWKGINLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ VL+G++ L + + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYVITTFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ + P SF GH +GI+VG
Sbjct: 154 NNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHQAGILVG 202
>gi|340370436|ref|XP_003383752.1| PREDICTED: rhomboid domain-containing protein 1-like [Amphimedon
queenslandica]
Length = 335
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 15/151 (9%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
R+ + F H HL +NM S +W +E+ G+ Y+ ++ + LL G+
Sbjct: 91 RLFLAPFIHADSWHLYYNMISFMWKARTLEKR----YGSLYFA----YMIAMFTLLTSGV 142
Query: 112 YHLL----IQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
Y +L + F Y+ R AVG+S V+F + + QP+ +FG + +P A +
Sbjct: 143 YLILNVHLAEYFDWSYYNRC-AVGFSGVIFAVKVLTTHLQPNHMSYVFG-IGIPSKLAVW 200
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
L+ S++ P ASF+GHL+GI+VG A G
Sbjct: 201 AELLLISVLNPNASFIGHLAGILVGLAFVSG 231
>gi|449518911|ref|XP_004166479.1| PREDICTED: uncharacterized protein At3g58460-like [Cucumis sativus]
Length = 344
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 133/295 (45%), Gaps = 47/295 (15%)
Query: 15 TSCIIGICSVIWFYIQKKNIGY-SHVGLSY-ETAVDGHH--WRIITSAFSHISVLHLVFN 70
TS II IC I Y+ +GY S V + + A+ H +RI TS H S+LH++FN
Sbjct: 34 TSSIILICGTI--YLVCLLVGYDSFVEVCFLPVAILSHFQVYRIFTSVLFHGSLLHVLFN 91
Query: 71 MSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR--FKLEYFRRVT 128
M AL LG +L + +G+ L T++L + + ++ L I ++ +
Sbjct: 92 MLALVPLG--SELERI-MGSIRMLYLTILLAISNAIIHLFIAVVMAHNPFHHYDNLMNEC 148
Query: 129 AVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSG 188
A+G+S ++F + I + +FG ++P + + L+ +++ SFLGHL G
Sbjct: 149 AIGFSGILFSLIVIETSLSGIQSRSVFGLFNVPAQWYVWILLVVFQLLMTNVSFLGHLCG 208
Query: 189 IIVGYAIAWGLIH----GMNNYWAL---SMLGWIVL---------------VFVYSLKRS 226
II G+A +GL++ G Y A+ S+L V + YS + +
Sbjct: 209 IITGFAYIYGLLNFLLPGTAFYSAMESSSLLSSCVRRPKFILCTGGNPSAQLPTYSDQNT 268
Query: 227 GTYDFNFLEI-----------ESVTDPSLPSVRFIGNGRTL---QMSAIPVEGVE 267
+ + + E+VT+P RF G GRTL Q + P + E
Sbjct: 269 TSNSLSVPNVWRNLSSWMPRRETVTEPQQQDNRFPGRGRTLGSAQNQSAPADDSE 323
>gi|449459580|ref|XP_004147524.1| PREDICTED: uncharacterized protein At3g58460-like [Cucumis sativus]
Length = 397
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 133/295 (45%), Gaps = 47/295 (15%)
Query: 15 TSCIIGICSVIWFYIQKKNIGY-SHVGLSY-ETAVDGHH--WRIITSAFSHISVLHLVFN 70
TS II IC I Y+ +GY S V + + A+ H +RI TS H S+LH++FN
Sbjct: 26 TSSIILICGTI--YLVCLLVGYDSFVEVCFLPVAILSHFQVYRIFTSVLFHGSLLHVLFN 83
Query: 71 MSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR--FKLEYFRRVT 128
M AL LG +L + +G+ L T++L + + ++ L I ++ +
Sbjct: 84 MLALVPLG--SELERI-MGSIRMLYLTILLAISNAIIHLFIAVVMAHNPFHHYDNLMNEC 140
Query: 129 AVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSG 188
A+G+S ++F + I + +FG ++P + + L+ +++ SFLGHL G
Sbjct: 141 AIGFSGILFSLIVIETSLSGIQSRSVFGLFNVPAQWYVWILLVVFQLLMTNVSFLGHLCG 200
Query: 189 IIVGYAIAWGLIH----GMNNYWAL---SMLGWIVL---------------VFVYSLKRS 226
II G+A +GL++ G Y A+ S+L V + YS + +
Sbjct: 201 IITGFAYIYGLLNFLLPGTAFYSAMESSSLLSSCVRRPKFILCTGGNPSAQLPTYSDQNT 260
Query: 227 GTYDFNFLEI-----------ESVTDPSLPSVRFIGNGRTL---QMSAIPVEGVE 267
+ + + E+VT+P RF G GRTL Q + P + E
Sbjct: 261 TSNSLSVPNVWRNLSSWMPRRETVTEPQQQDNRFPGRGRTLGSAQNQSAPADDSE 315
>gi|291392324|ref|XP_002712556.1| PREDICTED: rhomboid domain containing 1 [Oryctolagus cuniculus]
Length = 316
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 8/181 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IW ++ Y+ +S E W R++ S H HL FNM S LW +E+
Sbjct: 39 IWLFLNPLKPLYNSC-ISVERCYQQKDWQRLLLSPVHHADDWHLYFNMVSMLWKGVNLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ +L+G++ L + + + +RR AVG+S V+F +
Sbjct: 98 R----LGSKWFAYIIATFSLLTGVVYLLLQFVFAEFMNEPDYRRNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHG 202
+ P +++ GF +P FA + L+ P +SF GHL+GI+VG G +
Sbjct: 154 NNHYCPGGFVNILGF-PVPNRFACWAELVAIHFFTPGSSFSGHLAGILVGLMYTQGPLKK 212
Query: 203 M 203
M
Sbjct: 213 M 213
>gi|391331176|ref|XP_003740026.1| PREDICTED: rhomboid domain-containing protein 1-like [Metaseiulus
occidentalis]
Length = 471
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 12/185 (6%)
Query: 19 IGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSA-LWSL 77
+G+ V W I++ I +Y RI +SA H HL +NM++ +W
Sbjct: 43 LGLIKVPWRSIEECCIS------AYTLIERREFMRIFSSALEHSDSYHLYYNMASFVWKG 96
Query: 78 GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVF 137
++E + +G ++ +V +L L+ + I + L F F A+G+S V+F
Sbjct: 97 IILESV----MGAPFFAYLLVVFTILVALVSVSINYALAILFSSFDFMSSCAIGFSGVIF 152
Query: 138 GWMTILSVKQPSSKLDLFGF-LSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
+++ P + G+ L +P + L S+ VP+ASF+GHL+GI+VG A +
Sbjct: 153 ALKVVVNKVYPDVHPVIGGYNLRVPGGMYVWLELALISLFVPRASFVGHLAGILVGTAYS 212
Query: 197 WGLIH 201
G +H
Sbjct: 213 VGFLH 217
>gi|67846060|ref|NP_001020062.1| rhomboid-related protein 4 [Rattus norvegicus]
gi|81908697|sp|Q4V8F3.1|RHBL4_RAT RecName: Full=Rhomboid-related protein 4; Short=RRP4; AltName:
Full=Rhomboid domain-containing protein 1;
Short=rRHBDD1; AltName: Full=Rhomboid-like protein 4
gi|66910605|gb|AAH97416.1| Rhomboid domain containing 1 [Rattus norvegicus]
Length = 316
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
+WF++ Y H +S E + W R++ S H HL FNM S LW +E+
Sbjct: 39 VWFFLNPWKPLY-HSCISVEKCYQQNDWQRLLLSPVHHGDDWHLYFNMVSMLWKGVKLEK 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ +L+G++ L + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYIIATFSLLTGVVYLLLQFASAELMNQPDFKRNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L P SF GHL+GI+VG
Sbjct: 154 SNHYCPGGFVNILGF-PVPNRFACWAELAAIHFCTPGTSFAGHLAGILVG 202
>gi|449015371|dbj|BAM78773.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 425
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 98/200 (49%), Gaps = 24/200 (12%)
Query: 18 IIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSL 77
++G C++++ Q I S V + E + + +R+ T+ F H++++H+ NM L +
Sbjct: 35 LVGSCTLLFLCQQALQIPLSAVCIDPELQISSNTYRLFTAPFFHVNLVHIFANMIVLLDI 94
Query: 78 GVVEQLGDVGLGTAYYLQYTLVLVVLSG----LLVLGIYHLLIQRFK----------LEY 123
G + LG+ +L +++ +SG +L + + + + F+ L Y
Sbjct: 95 GPPLER---RLGSFLFLFIVFLMICVSGVFRAILAMSV-RVALTPFEMSTRAPLLPLLSY 150
Query: 124 FRRVT---AVGYSCVVFGWMTILSVKQ--PSSKLDLFGFLSLPISFAPFESLIFTSIIVP 178
RR T AVG+S V+F ++ ++ V Q + L + G + P F P L+ ++VP
Sbjct: 151 IRRQTHACAVGFSGVLFAFL-VIHVHQFVATDILWILGVVPCPSRFYPLALLVLLQLMVP 209
Query: 179 QASFLGHLSGIIVGYAIAWG 198
GHL+G++VGY G
Sbjct: 210 AVDLCGHLAGMLVGYTYVRG 229
>gi|224001444|ref|XP_002290394.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973816|gb|EED92146.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 331
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 13/148 (8%)
Query: 50 HHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVL 109
++RIITS+ H S++H+ NM + ++G + + +T+ L VL G+L+
Sbjct: 51 EYYRIITSSLFHGSLMHIGMNMMSTMAIGTSLE--------KRFGTFTMALTVLWGVLLT 102
Query: 110 GIYH-----LLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
+ + LL F E ++G+S V+F + + P+ +FG + +
Sbjct: 103 SVIYMTTSWLLYVGFGYEKMMYQHSLGFSGVIFQLSVLEANLTPNRSRSVFGMIQVSSKM 162
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVG 192
P+ L+ I+PQ SFLGHLSGI++G
Sbjct: 163 YPWCLLVVLQFIMPQISFLGHLSGILLG 190
>gi|344292440|ref|XP_003417935.1| PREDICTED: rhomboid domain-containing protein 1-like [Loxodonta
africana]
Length = 315
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
Query: 41 LSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTL 98
+S E W R++ S F H HL FNM S LW +E+ LG+ ++
Sbjct: 54 ISVEKCYQQKDWQRLLLSPFHHADDWHLYFNMASMLWKGINLERR----LGSRWFAYIIA 109
Query: 99 VLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL 158
+L+G++ L + L FRR AVG+S V+F + + P +++ G L
Sbjct: 110 TFSLLTGVVYLLLESSLAAFLDEPDFRRTCAVGFSGVLFALKVLNNHYCPGCFVNILG-L 168
Query: 159 SLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+P +A + L+ P SF GHL+GI+VG
Sbjct: 169 PVPNRYACWVELVAIHFFTPGTSFAGHLAGILVG 202
>gi|351715240|gb|EHB18159.1| Rhomboid domain-containing protein 1 [Heterocephalus glaber]
Length = 315
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 82/175 (46%), Gaps = 18/175 (10%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IW ++ Y H LS E W R++ S H HL FNM S LW +E+
Sbjct: 39 IWLFLTPLKPLY-HSCLSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEY-----FRRVTAVGYSCVVF 137
LG+ ++ VL S L+ G+ +LL+Q E+ FRR AVG+S V+F
Sbjct: 98 R----LGSRWF---AYVLTTFS--LLTGVVYLLLQVACAEFMDEPDFRRNCAVGFSGVLF 148
Query: 138 GWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ + P +++ GF +P A + L+ P SF GHL+GI+VG
Sbjct: 149 ALKVLSNHYCPGGFVNVLGF-PVPNRLACWAELLAIHFFSPGTSFAGHLAGILVG 202
>gi|355716387|gb|AES05595.1| rhomboid domain containing 1 [Mustela putorius furo]
Length = 294
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 13/176 (7%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ + LS E W R++ S H HL FNM S LW +E+
Sbjct: 39 IWFFLNPLKPLFESC-LSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGIHLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ + +L+G+L L + L + FRR AVG+S V+F +
Sbjct: 98 R----LGSRWFAYVIVTFSLLTGVLYLFLEFALAEFLDEPDFRRNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGF------LSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P ++ GF +P A + L+ + P SF GHL+GI+VG
Sbjct: 154 NNHYCPGGFANILGFPVPNRLACVPNRLACWAELLAIHFLSPGTSFAGHLAGILVG 209
>gi|62858293|ref|NP_001016449.1| rhomboid domain containing 1 [Xenopus (Silurana) tropicalis]
gi|89272850|emb|CAJ82135.1| novel protein containing rhomboid domain [Xenopus (Silurana)
tropicalis]
Length = 308
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 49 GHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
G W R + S F H HL FNM S LW +E+ LG+ + +V L G+
Sbjct: 62 GRDWQRFLLSPFHHADDWHLYFNMVSLLWKGAKLER----KLGSGLFATIIIVFSQLIGV 117
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
+ + + + L + ++ AVG+S V+F + + P ++FG L +P +A
Sbjct: 118 VYVILEYGLAEFTGDPSYKMQCAVGFSGVLFALKVLNNYYHPGGSSNVFGIL-IPNKYAC 176
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVG 192
+ L+ ++ P SF+GHLSGI+VG
Sbjct: 177 WAELVAIHLLSPGTSFVGHLSGILVG 202
>gi|303271301|ref|XP_003055012.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462986|gb|EEH60264.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 231
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 12/148 (8%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
G +R +T+ F H S+LHL NM+A +G L + LGT Q+ L++++ + LV
Sbjct: 55 GEVYRALTAPFFHGSLLHLALNMTAF--VGTASGL-ERSLGTT---QFALIVLLFA--LV 106
Query: 109 LGIYHLLIQRFKLEY----FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
YH+ + A+G S ++FG + + + + +FGF +P +
Sbjct: 107 AAAYHVALATAAALVGFTGAPMECAIGLSGIIFGLIVVDTHLSAIERRSVFGFFDVPSGW 166
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVG 192
P L+F +I P SFLGH +G++ G
Sbjct: 167 YPLGLLLFIQVIAPAVSFLGHAAGLLAG 194
>gi|348544033|ref|XP_003459486.1| PREDICTED: rhomboid domain-containing protein 1-like [Oreochromis
niloticus]
Length = 323
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
R++ S H HL FNM S LW +EQ LG ++L V +L+GL+ L +
Sbjct: 67 RLLLSPLHHADDWHLYFNMVSFLWKGRRLEQR----LGGPWFLYLLSVFSLLTGLVYLVL 122
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS--FAPFES 169
LL + + + + AVG+S V+F + + P S + G LP+S +A +
Sbjct: 123 EALLTELMQDQSYSMACAVGFSGVLFALKVLNNHYYPGSVTYVMG---LPVSSRYASWVE 179
Query: 170 LIFTSIIVPQASFLGHLSGIIVG 192
L+ I P SF+GHLSGI+VG
Sbjct: 180 LVLIHITSPGTSFVGHLSGILVG 202
>gi|9294149|dbj|BAB02051.1| unnamed protein product [Arabidopsis thaliana]
Length = 506
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
R+ SAF H++ HLV+NM S LW +E +G++ + L+ +S + L +
Sbjct: 250 RLFLSAFYHVNEPHLVYNMMSLLWKGIKLE----TSMGSSEFASMVFTLIGMSQGVTLLL 305
Query: 112 YHLLIQRFKLE--YFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFES 169
L+ F + Y+ AVG+S V+F +L+ Q ++G L +P +A +
Sbjct: 306 AKSLLLLFDYDRAYYNEY-AVGFSGVLFAMKVVLN-SQAEDYSSVYGIL-VPTKYAAWAE 362
Query: 170 LIFTSIIVPQASFLGHLSGIIVG 192
LI + VP ASFLGHL GI+ G
Sbjct: 363 LILVQMFVPNASFLGHLGGILAG 385
>gi|50288809|ref|XP_446834.1| hypothetical protein [Candida glabrata CBS 138]
gi|74609932|sp|Q6FSG0.1|RBD2_CANGA RecName: Full=Rhomboid protein 2
gi|49526143|emb|CAG59765.1| unnamed protein product [Candida glabrata]
Length = 266
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 18/145 (12%)
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
H+S LHLVFN +L +V L + +++ +T V++ LS ++ IY ++ +
Sbjct: 65 HLSYLHLVFN-----ALAIVGPLNN--FESSHGTIHTGVVLNLSAVIAGIIYCVVSRLLS 117
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPS--SKLDLFGFL-----SLPISFAPFESLIFT 173
LE G S VF ++T L VK+ +L+L F+ S+P F P L+FT
Sbjct: 118 LE----TGVAGASGWVFTFITYLCVKESQLYPRLELSRFIPGVTQSIPTQFTPVVFLLFT 173
Query: 174 SIIVPQASFLGHLSGIIVGYAIAWG 198
+I+ Q+SFLGH +G+IVGY + +G
Sbjct: 174 AIVFFQSSFLGHTAGMIVGYIMGYG 198
>gi|358348102|ref|XP_003638088.1| hypothetical protein MTR_118s0012 [Medicago truncatula]
gi|355504023|gb|AES85226.1| hypothetical protein MTR_118s0012 [Medicago truncatula]
Length = 403
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 15/211 (7%)
Query: 15 TSCIIGICSVIWFYIQKKNIGYSHVG----LSYETAVDGHHWRIITSAFSHISVLHLVFN 70
TS ++ +C I+F +GY L +RI T+ H S+LH++FN
Sbjct: 26 TSAVVIVCGAIYFVCLL--VGYDSFSEICFLPSAVVSRFQVYRIYTAILFHGSLLHVLFN 83
Query: 71 MSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLE--YFRRVT 128
M AL LG +L + +G+ L T++L + ++ + I L+ L Y
Sbjct: 84 MMALVPLG--SELERI-MGSVRLLYVTILLATSNAIIHVFIALLVAYNPILTNGYLMNEC 140
Query: 129 AVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSG 188
A+G+S V+F + I + +FG ++P + F L+ +++ S LGHLSG
Sbjct: 141 AIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFFLLVVFQLLMQNVSLLGHLSG 200
Query: 189 IIVGYAIAWG----LIHGMNNYWALSMLGWI 215
I+ G+A +G LI G + Y ++ W+
Sbjct: 201 IVSGFAYTFGLFNFLIPGTSFYSSIEASSWL 231
>gi|115620361|ref|XP_780455.2| PREDICTED: rhomboid domain-containing protein 1-like
[Strongylocentrotus purpuratus]
Length = 349
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
R+ +A+ H+ HL FNM S +W +E+ G+ Y+ +V L+ L++ +
Sbjct: 82 RLFLAAWFHLDDFHLYFNMVSFVWKGISLER----KFGSPYFAYLIVVFCFLTNGLLVAL 137
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
L + + A G+S V+F + + P + G S+P +A + L+
Sbjct: 138 NVGLAELLEDSSHIVSCAAGFSGVLFALKVLTTTYTPVQSQRIMGLFSVPSRWACWVELV 197
Query: 172 FTSIIVPQASFLGHLSGIIVGYAIAWG 198
+IVP+ASF GHL+GI+VG A G
Sbjct: 198 LIQLIVPRASFTGHLAGILVGLAYVKG 224
>gi|299471888|emb|CBN77058.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 418
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Query: 42 SYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGT-AYYLQYTLVL 100
+YE + R++ S F H +HL +NM++ GV +L +GT A+ + L
Sbjct: 109 TYERTGEVEIRRLLMSPFVHGDDMHLYYNMASFLLKGVSLELT---MGTQAFAGLLSFSL 165
Query: 101 VVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSL 160
+ L++L + LL+ F + AVG+S V+F +LS + P + GF S+
Sbjct: 166 LASQTLMMLSAWVLLVV-FDVPSPMHACAVGFSGVLFALKYVLSRRSPGVT-SVMGF-SV 222
Query: 161 PISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+A + L+ S++VP ASFLGHL GI+ G
Sbjct: 223 HTRYATWLELVLISVMVPNASFLGHLCGILAG 254
>gi|30684602|ref|NP_850606.1| rhomboid-like protein 14 [Arabidopsis thaliana]
gi|75247670|sp|Q8RXW0.1|Y3761_ARATH RecName: Full=Uncharacterized protein At3g17611
gi|19310562|gb|AAL85014.1| unknown protein [Arabidopsis thaliana]
gi|21436261|gb|AAM51269.1| unknown protein [Arabidopsis thaliana]
gi|332642458|gb|AEE75979.1| rhomboid-like protein 14 [Arabidopsis thaliana]
Length = 334
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIY 112
R+ SAF H++ HLV+NM +L G+ + +G++ + L+ +S + L +
Sbjct: 78 RLFLSAFYHVNEPHLVYNMMSLLWKGIKLE---TSMGSSEFASMVFTLIGMSQGVTLLLA 134
Query: 113 HLLIQRFKLEY-FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
L+ F + + AVG+S V+F +L+ Q ++G L +P +A + LI
Sbjct: 135 KSLLLLFDYDRAYYNEYAVGFSGVLFAMKVVLN-SQAEDYSSVYGIL-VPTKYAAWAELI 192
Query: 172 FTSIIVPQASFLGHLSGIIVG 192
+ VP ASFLGHL GI+ G
Sbjct: 193 LVQMFVPNASFLGHLGGILAG 213
>gi|443690109|gb|ELT92325.1| hypothetical protein CAPTEDRAFT_180450 [Capitella teleta]
Length = 356
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
R+ ++F H+ HL FNM S LW +E+ LG+AY+ LV VL+ +++G+
Sbjct: 70 RLFLASFYHLDEWHLYFNMVSMLWKGVNLERR----LGSAYFAYMVLVFSVLTNAILVGL 125
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
+ + + A G+S V+F + + P + + + + A + L+
Sbjct: 126 GVIAEEILHDHSYISTCAAGFSGVLFALKVVAAHLSPPTTQYVMNIIPVNSRLACWAELL 185
Query: 172 FTSIIVPQASFLGHLSGIIVG 192
I+VP +SF+GHL+GI+VG
Sbjct: 186 LIHILVPNSSFVGHLAGILVG 206
>gi|388508086|gb|AFK42109.1| unknown [Medicago truncatula]
Length = 335
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
R SAF H+ HLVFNM S LW +E +G+ + L+ LS + L +
Sbjct: 77 RFFLSAFYHLGEPHLVFNMISLLWKGIHLES----SIGSLQFASMIASLLALSQSINLVL 132
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
L F + + A G+S V+F M I+ Q +++G L +P +A + LI
Sbjct: 133 SKSLFVFFDYDRYYYEYAAGFSGVLFA-MKIVLNSQSDDYTNVYGVL-IPSRYAAWAELI 190
Query: 172 FTSIIVPQASFLGHLSGIIVG 192
+ VP SFLGHLSGI+ G
Sbjct: 191 LIQMFVPNVSFLGHLSGILAG 211
>gi|444730882|gb|ELW71255.1| Rhomboid domain-containing protein 1 [Tupaia chinensis]
Length = 278
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 22/177 (12%)
Query: 25 IWFYIQK-KNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNMSALWSLGV--V 80
IWF++ K + YS LS E W R++ S H HL FNM+++ GV
Sbjct: 39 IWFFLNPLKPLIYS--CLSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGVHLE 96
Query: 81 EQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEY-----FRRVTAVGYSCV 135
+LG ++ V+ S L+ G+ +LL+Q E+ +R+ AVG+S V
Sbjct: 97 RRLGS--------RRFAYVISTFS--LLTGVVYLLLQFAVAEFMDEPDYRKSCAVGFSGV 146
Query: 136 VFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+F + + P +++ GF +P FA + L+ P SF GHL+GI+VG
Sbjct: 147 LFALKVLNNHYFPGGFVNVLGF-PVPNKFACWAELVAIHFFSPGTSFAGHLAGILVG 202
>gi|296490188|tpg|DAA32301.1| TPA: rhomboid domain-containing protein 1 [Bos taurus]
Length = 268
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ S LS E W R++ S H HL FNM S LW +E+
Sbjct: 39 IWFFLNPLKPLLSSC-LSVEKCYYQKDWQRLLLSPLHHADDWHLYFNMVSMLWKGIHLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ + +L+G++ L + L + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYIIVTFSLLTGVVYLFLEFALAEFLNEPDFKRNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPIS--FAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF P+S FA + L+ I P SF GHL+GI+VG
Sbjct: 154 NNHCCPGGFVNVLGF---PVSNRFACWVELLAIHFISPGTSFAGHLAGILVG 202
>gi|426221661|ref|XP_004005027.1| PREDICTED: rhomboid-related protein 4 [Ovis aries]
Length = 322
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ S LS E W R++ S H HL FNM S LW +E+
Sbjct: 39 IWFFLNPLKPLLSSC-LSVEKCYQQKDWQRLLLSPIHHADDWHLYFNMASMLWKGIHLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ + +L+G++ L + L + F+R A+G+S V+F +
Sbjct: 98 R----LGSRWFAYIIVTFSLLTGVVYLFLEFALAEFLNEPDFKRNCAIGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPIS--FAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF P+S FA + L+ I P SF GHL+GI+VG
Sbjct: 154 NNHCCPGGFVNVLGF---PVSNRFACWVELLAIHFISPGTSFAGHLAGILVG 202
>gi|321459244|gb|EFX70299.1| hypothetical protein DAPPUDRAFT_300486 [Daphnia pulex]
Length = 312
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIY 112
R++ SA H LHL +NM + S G + + G+ Y+ V VL+ + +G+
Sbjct: 70 RLVLSALEHADDLHLYYNMLSFLSKG---RSLERHFGSPYFAYLLSVFTVLTSVTYVGLE 126
Query: 113 HLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIF 172
LL + + + A+G+S V+F + + S FG + + +A + LI
Sbjct: 127 VLLSELLHDKQHYKTCAIGFSGVIFALKVLTTSYWESGYRRYFG-IRVSGKYAVWVELIA 185
Query: 173 TSIIVPQASFLGHLSGIIVGYAIAWG 198
++VP SF+GHL+GI+VG A G
Sbjct: 186 IQLMVPNTSFVGHLAGILVGVAYTQG 211
>gi|297830378|ref|XP_002883071.1| hypothetical protein ARALYDRAFT_898103 [Arabidopsis lyrata subsp.
lyrata]
gi|297328911|gb|EFH59330.1| hypothetical protein ARALYDRAFT_898103 [Arabidopsis lyrata subsp.
lyrata]
Length = 335
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIY 112
R+ SAF H++ HLV+NM +L G+ + +G++ + L+ +S + L +
Sbjct: 79 RLFLSAFYHVNEPHLVYNMMSLLWKGIKLE---TSMGSSEFASMVFTLIGMSQGVTLLLA 135
Query: 113 HLLIQRFKLEY-FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
L+ F + + AVG+S V+F +L+ Q ++G L +P +A + LI
Sbjct: 136 KSLLVLFDYDRAYYNEYAVGFSGVLFALKVVLN-SQAEDYSSVYGIL-VPTKYAAWAELI 193
Query: 172 FTSIIVPQASFLGHLSGIIVG 192
+ VP ASFLGHL GI+ G
Sbjct: 194 LVQMFVPNASFLGHLGGILAG 214
>gi|307103357|gb|EFN51618.1| hypothetical protein CHLNCDRAFT_55006 [Chlorella variabilis]
Length = 326
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 27/206 (13%)
Query: 10 MEKPATSCIIGICSVIWFYIQKKNIGY----SHVGLSYETAVDGHHWRIITSAFSHISVL 65
+E+ I+ + + ++F++Q + + L + + G R++ S F H L
Sbjct: 59 LERKPPITILLVVAQVFFFLQPEGFEWVPSIRQGCLLPRSILSGQWGRLLWSPFLHADNL 118
Query: 66 HLVFNMSAL-WSLGVVEQLG-----------DVGLGTAYYLQYTLVLVVLSGLLVLGIYH 113
HL +NM++L W +QLG + LG+A Y L ++S L +G+
Sbjct: 119 HLYYNMTSLLWK--ASQQLGAGRCCFWGSQLEPRLGSAAYGALVAELALVSNALYMGLAA 176
Query: 114 LLIQRFKLEYFR--RVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS-----FAP 166
LL + + AVG+S V+FG +L+ P +++G ++LP +A
Sbjct: 177 LLARHAPALGWSLMHACAVGFSGVLFGMKVVLNHNSPGWS-EIYG-IALPTKASASMYAC 234
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVG 192
+ L+ ++VP+ASF GHL GI+ G
Sbjct: 235 WAELLVMQLLVPEASFWGHLCGILAG 260
>gi|427785133|gb|JAA58018.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 450
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 8/168 (4%)
Query: 41 LSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTL 98
+S + W RI A H LHL +NM S +W ++E + LG A + +
Sbjct: 59 ISVNAVIFKKQWLRIFYGAIEHGDSLHLYYNMVSFIWKGMLLEPV----LGGAQFAYIIV 114
Query: 99 VLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGF- 157
+ L G+++LG+ +LL F F AVG+S V+F + + P G
Sbjct: 115 LFTALCGIVLLGLNYLL-GTFVDSAFYYQCAVGFSGVIFALKVLNNYYFPGRSRRFLGID 173
Query: 158 LSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNN 205
+ LP + L+ ++ P AS +GHL+GI+VG A +G+I +++
Sbjct: 174 IDLPAGQVVWLELVLIQLVTPNASLVGHLAGILVGLAYVYGVITPVSD 221
>gi|118151086|ref|NP_001071463.1| rhomboid domain-containing protein 1 [Bos taurus]
gi|115304921|gb|AAI23778.1| Rhomboid domain containing 1 [Bos taurus]
Length = 267
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ S LS E W R++ S H HL FNM S LW +E+
Sbjct: 39 IWFFLNPLKPLLSSC-LSVEKCYYQKDWQRLLLSPLHHADDWHLYFNMVSMLWKGIHLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ + +L+G++ L + L + F+R AVG+S V+F +
Sbjct: 98 ----RLGSRWFAYIIVTFSLLTGVVYLFLEFALAEFLNEPDFKRNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPIS--FAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF P+S FA + L+ I P SF GHL+GI+VG
Sbjct: 154 NNHCCPGGFVNVLGF---PVSNRFACWVELLAIHFISPGTSFAGHLAGILVG 202
>gi|291235069|ref|XP_002737468.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 414
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
Query: 50 HHW-RIITSAFSHISVLHLVFNMSA-LWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
H W R++ +++ H S +HL FNM++ LW +E+ LG+ Y+ V VL+ L
Sbjct: 73 HEWSRLLLASWFHTSDMHLYFNMASFLWKGMSLER----KLGSKYFAYMIAVFSVLTSSL 128
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
++ + L + F + AVG+S V+F + + + G + + A +
Sbjct: 129 LVCLDILASEVFGDASYLYSCAVGFSAVIFSIKMVTTYSMAPGTQWIMGLIPVHSRIACW 188
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
L+ ++VP SF GHL+GI+VG A G
Sbjct: 189 VELVLIQVLVPNVSFTGHLAGILVGLAYVKG 219
>gi|146231840|gb|ABQ12995.1| rhomboid domain containing 1 [Bos taurus]
Length = 322
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ S LS E W R++ S H HL FNM S LW +E+
Sbjct: 39 IWFFLNPLKPLLSSC-LSVEKCYYQKDWQRLLLSPLHHADDWHLYFNMVSMLWKGIHLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ + +L+G++ L + L + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYIIVTFSLLTGVVYLFLEFALAEFLNEPDFKRNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPIS--FAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF P+S FA + L+ I P SF GHL+GI+VG
Sbjct: 154 NNHCCPGGFVNVLGF---PVSNRFACWVELLAIHFISPGTSFAGHLAGILVG 202
>gi|440910625|gb|ELR60400.1| Rhomboid domain-containing protein 1 [Bos grunniens mutus]
Length = 322
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ S LS E W R++ S H HL FNM S LW +E+
Sbjct: 39 IWFFLNPLKPLLSSC-LSVEKCYYQKDWQRLLLSPLHHADDWHLYFNMVSMLWKGIHLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ + +L+G++ L + L + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYIIVTFSLLTGVVYLFLEFALAEFLNEPDFKRNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPIS--FAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF P+S FA + L+ I P SF GHL+GI+VG
Sbjct: 154 NNHCCPGGFVNVLGF---PVSNRFACWVELLAIHFISPGTSFAGHLAGILVG 202
>gi|18410961|ref|NP_567064.1| rhomboid-like protein 15 [Arabidopsis thaliana]
gi|73921121|sp|Q8LB17.2|Y3846_ARATH RecName: Full=Uncharacterized protein At3g58460
gi|22531096|gb|AAM97052.1| putative protein [Arabidopsis thaliana]
gi|23197956|gb|AAN15505.1| putative protein [Arabidopsis thaliana]
gi|332646263|gb|AEE79784.1| rhomboid-like protein 15 [Arabidopsis thaliana]
Length = 403
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 109/251 (43%), Gaps = 47/251 (18%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
+R T+ H S+LH++FNM AL +G +L + +G+ L T++L + +L
Sbjct: 65 YRFYTAIIFHGSLLHVLFNMMALVPMG--SELERI-MGSVRLLYLTVLLATTNAVL---- 117
Query: 112 YHLLIQR-------FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
HLLI ++ ++ A+G+S ++F + I + + +FG ++P
Sbjct: 118 -HLLIASLAGYNPFYQYDHLMNECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKL 176
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH----GMNNYWALSMLGWI----- 215
P+ LI +++ S LGHL GI+ G++ ++GL + G + + + W+
Sbjct: 177 YPWILLIVFQLLMTNVSLLGHLCGILSGFSYSYGLFNFLMPGSSFFTTIESASWMSSFIR 236
Query: 216 -------------VLVFVYSLKRSGTYDF----------NFLEIESVTDPSLPSVRFIGN 252
+ YS + + + F ++L ++ S RF G
Sbjct: 237 RPKFIMCTGGNPSSYIPTYSAQNTTSSGFSTGNAWRSLSSWLPQREASNQSSEDSRFPGR 296
Query: 253 GRTLQMSAIPV 263
GRTL + P
Sbjct: 297 GRTLSTARDPT 307
>gi|359481109|ref|XP_002267146.2| PREDICTED: uncharacterized protein At3g58460-like [Vitis vinifera]
gi|296089310|emb|CBI39082.3| unnamed protein product [Vitis vinifera]
Length = 406
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 21/198 (10%)
Query: 15 TSCIIGICSVIWFYIQKKNIGY-SHVGLSYETAV---DGHHWRIITSAFSHISVLHLVFN 70
TS ++ ICS+I Y+ +GY S V + + + +RI T+ H S+LH++FN
Sbjct: 26 TSAVVIICSII--YLVCLLVGYDSFVEICFSPSAIISQFQVYRIYTAIIFHGSLLHVLFN 83
Query: 71 MSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR-------FKLEY 123
M AL LG +L + +G+ L Y +VL+ S I+H+LI + Y
Sbjct: 84 MMALVPLG--SELERI-MGSVR-LFYMIVLLATSN----AIFHVLIASLVAYNPFYSYHY 135
Query: 124 FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
A+G+S ++F + I + + +FG ++P + + L+ +++ S L
Sbjct: 136 LMNECAIGFSGILFSMIVIETSLSGAQTRSVFGLFNVPAKWYAWILLVVFQLLMTNVSLL 195
Query: 184 GHLSGIIVGYAIAWGLIH 201
GHL GI+ G+A +GL +
Sbjct: 196 GHLCGILSGFAYTYGLFN 213
>gi|227204337|dbj|BAH57020.1| AT3G58460 [Arabidopsis thaliana]
Length = 362
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 109/251 (43%), Gaps = 47/251 (18%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
+R T+ H S+LH++FNM AL +G +L + +G+ L T++L + +L
Sbjct: 65 YRFYTAIIFHGSLLHVLFNMMALVPMG--SELERI-MGSVRLLYLTVLLATTNAVL---- 117
Query: 112 YHLLIQR-------FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
HLLI ++ ++ A+G+S ++F + I + + +FG ++P
Sbjct: 118 -HLLIASLAGYNPFYQYDHLMNECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKL 176
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH----GMNNYWALSMLGWI----- 215
P+ LI +++ S LGHL GI+ G++ ++GL + G + + + W+
Sbjct: 177 YPWILLIVFQLLMTNVSLLGHLCGILSGFSYSYGLFNFLMPGSSFFTTIESASWMSSFIR 236
Query: 216 -------------VLVFVYSLKRSGTYDF----------NFLEIESVTDPSLPSVRFIGN 252
+ YS + + + F ++L ++ S RF G
Sbjct: 237 RPKFIMCTGGNPSSYIPTYSAQNTTSSGFSTGNAWRSLSSWLPQREASNQSSEDSRFPGR 296
Query: 253 GRTLQMSAIPV 263
GRTL + P
Sbjct: 297 GRTLSTARDPT 307
>gi|334186083|ref|NP_001190126.1| rhomboid-like protein 15 [Arabidopsis thaliana]
gi|332646264|gb|AEE79785.1| rhomboid-like protein 15 [Arabidopsis thaliana]
Length = 426
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 109/251 (43%), Gaps = 47/251 (18%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
+R T+ H S+LH++FNM AL +G +L + +G+ L T++L + +L
Sbjct: 88 YRFYTAIIFHGSLLHVLFNMMALVPMG--SELERI-MGSVRLLYLTVLLATTNAVL---- 140
Query: 112 YHLLIQR-------FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
HLLI ++ ++ A+G+S ++F + I + + +FG ++P
Sbjct: 141 -HLLIASLAGYNPFYQYDHLMNECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKL 199
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH----GMNNYWALSMLGWI----- 215
P+ LI +++ S LGHL GI+ G++ ++GL + G + + + W+
Sbjct: 200 YPWILLIVFQLLMTNVSLLGHLCGILSGFSYSYGLFNFLMPGSSFFTTIESASWMSSFIR 259
Query: 216 -------------VLVFVYSLKRSGTYDF----------NFLEIESVTDPSLPSVRFIGN 252
+ YS + + + F ++L ++ S RF G
Sbjct: 260 RPKFIMCTGGNPSSYIPTYSAQNTTSSGFSTGNAWRSLSSWLPQREASNQSSEDSRFPGR 319
Query: 253 GRTLQMSAIPV 263
GRTL + P
Sbjct: 320 GRTLSTARDPT 330
>gi|21593075|gb|AAM65024.1| unknown [Arabidopsis thaliana]
Length = 403
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 109/251 (43%), Gaps = 47/251 (18%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
+R T+ H S+LH++FNM AL +G +L + +G+ L T++L + +L
Sbjct: 65 YRFYTAIIFHGSLLHVLFNMMALVPMG--SELERI-MGSVRLLYLTVLLATTNAVL---- 117
Query: 112 YHLLIQR-------FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
HLLI ++ ++ A+G+S ++F + I + + +FG ++P
Sbjct: 118 -HLLIASLAGYNPFYQYDHLMNECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKL 176
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH----GMNNYWALSMLGWI----- 215
P+ LI +++ S LGHL GI+ G++ ++GL + G + + + W+
Sbjct: 177 YPWILLIVFQLLMTNVSLLGHLCGILSGFSYSYGLFNFLMPGSSFFTTIESASWMSSFIR 236
Query: 216 -------------VLVFVYSLKRSGTYDF----------NFLEIESVTDPSLPSVRFIGN 252
+ YS + + + F ++L ++ S RF G
Sbjct: 237 QPKFIMCTGGNPSSYIPTYSAQNTTSSGFSTGNAWRSLSSWLPQREASNQSSEDSRFPGR 296
Query: 253 GRTLQMSAIPV 263
GRTL + P
Sbjct: 297 GRTLSTARDPT 307
>gi|6735363|emb|CAB68184.1| putative protein [Arabidopsis thaliana]
Length = 411
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 90/178 (50%), Gaps = 19/178 (10%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
+R T+ H S+LH++FNM AL +G +L + +G+ L T++L + +L
Sbjct: 65 YRFYTAIIFHGSLLHVLFNMMALVPMG--SELERI-MGSVRLLYLTVLLATTNAVL---- 117
Query: 112 YHLLIQR-------FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
HLLI ++ ++ A+G+S ++F + I + + +FG ++P
Sbjct: 118 -HLLIASLAGYNPFYQYDHLMNECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKL 176
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH----GMNNYWALSMLGWIVLV 218
P+ LI +++ S LGHL GI+ G++ ++GL + G + + + W+++V
Sbjct: 177 YPWILLIVFQLLMTNVSLLGHLCGILSGFSYSYGLFNFLMPGSSFFTTIESASWMLIV 234
>gi|408530693|emb|CCK28867.1| integral membrane protein [Streptomyces davawensis JCM 4913]
Length = 296
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 98/219 (44%), Gaps = 34/219 (15%)
Query: 15 TSCIIGICSVIWFYIQKKNIG------YSHVGLSY-------ETAVDGHHWRIITSAFSH 61
T +IG C + Y+ + +G +S +G +Y E +G +R++TS F H
Sbjct: 85 TKILIGAC--LAAYLVQMAVGDSFTDNFSLIGQAYVPHFGDVEGVAEGQSYRLLTSMFLH 142
Query: 62 ISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKL 121
SV+HL+FNM +LW LG + LG A Y L L +SGL + +LL +
Sbjct: 143 GSVIHLLFNMLSLWWLGGPL---EAALGRARY----LALYFVSGLAGSALAYLLAE---- 191
Query: 122 EYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQAS 181
+G S +FG +V D+ ++L ++ +LIFT S
Sbjct: 192 ---PNTATLGASGAIFGLFGATAVLMRRLNYDMRPIIAL-LAI----NLIFTFSPGFNIS 243
Query: 182 FLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFV 220
+ H+ G++ G I +G++H AL G + LV
Sbjct: 244 WQAHIGGLVAGVVIGYGMVHAPRERRALIQYGTVALVLA 282
>gi|311742190|ref|ZP_07716000.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
gi|311314683|gb|EFQ84590.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
Length = 283
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 82/186 (44%), Gaps = 31/186 (16%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
DG +WR++TSAF H VLHL+FNM AL+ G VE+ LG+A Y+ L + V SG
Sbjct: 119 DGGYWRLLTSAFLHAGVLHLLFNMYALYLFGPFVER----ALGSARYVAAYLTMAVFSGA 174
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
+V +LL R VG S VFG V +K D+ L L
Sbjct: 175 VV----YLLTD-------PRTFTVGASGAVFGLFGYALVLLVRAKQDVRTLLVL------ 217
Query: 167 FESLIFTSII--VPQASFLGHLSGIIVGYAIAWGLIHGMNNYWAL----SMLGWIVLVFV 220
L +I P S+ GHL G I G + + + L S+ G + L V
Sbjct: 218 ---LAVNGVISLAPNISWQGHLGGFIAGLTLGAAVAYAPRERRTLLQVVSVGGLLALSAV 274
Query: 221 YSLKRS 226
+ RS
Sbjct: 275 IVVARS 280
>gi|357128028|ref|XP_003565678.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
At3g17611-like [Brachypodium distachyon]
Length = 312
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 15/145 (10%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLS-GLL 107
G R +SAF H+S LHL+ NM++L S G ++L + +G+ + L+ LS G
Sbjct: 79 GDLRRFFSSAFYHVSELHLLMNMTSLLSAG--DEL-ETSMGSFEFASMVAFLLGLSKGFT 135
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
+L LL+ Y+ + +A G+S V+FG +L+ DL G P +A
Sbjct: 136 ILLSKSLLLLGNNSAYYHQHSA-GFSGVLFGMDVVLN--------DLAG--EGPEKYAVC 184
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVG 192
L+ T +++P+ASF+GHL GI+ G
Sbjct: 185 ARLLLTQVLIPEASFIGHLGGILAG 209
>gi|62955205|ref|NP_001017614.1| rhomboid domain-containing protein 1 [Danio rerio]
gi|62204835|gb|AAH92835.1| Zgc:110266 [Danio rerio]
Length = 335
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 8/142 (5%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIY 112
R++ S F H+ +HL FNM+ L G+ + G AY L V +L+G + L +
Sbjct: 67 RLLLSPFHHVDDMHLYFNMALLLWKGIRLEKKLGGPWFAYLLS---VFSLLTGFVYLLLE 123
Query: 113 HLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS--FAPFESL 170
L + + AVG+S V+FG + + P ++ G LPI+ +A + L
Sbjct: 124 TGLTHMTEDSSYSLQCAVGFSGVLFGLKVVNNHYHPGGATNIMG---LPIANRYACWVEL 180
Query: 171 IFTSIIVPQASFLGHLSGIIVG 192
+ I+ P SF+GHLSGI+VG
Sbjct: 181 VLIHIMNPGTSFVGHLSGILVG 202
>gi|297820678|ref|XP_002878222.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297324060|gb|EFH54481.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 109/251 (43%), Gaps = 47/251 (18%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
+R T+ H S+LH++FNM AL +G +L + +G+ L T++L + +L
Sbjct: 65 YRFYTAIIFHGSLLHVLFNMMALVPMG--SELERI-MGSVRLLYLTILLATTNAIL---- 117
Query: 112 YHLLIQR-------FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
HL+I ++ ++ A+G+S ++F + I + + +FG ++P
Sbjct: 118 -HLIIASLAGYNPFYQYDHLMNECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKL 176
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH----GMNNYWALSMLGWI----- 215
P+ LI +++ S LGHL GI+ G++ ++GL + G + + + W+
Sbjct: 177 YPWILLIVFQLLMTNVSLLGHLCGILSGFSYSYGLFNFLMPGSSFFTTIESASWMSSFVR 236
Query: 216 -------------VLVFVYSLKRSGTYDF----------NFLEIESVTDPSLPSVRFIGN 252
+ YS + + + F ++L ++ S RF G
Sbjct: 237 RPKFIMCTGGNPSSYIPTYSAQNTTSSGFSTGNAWRSLSSWLPQREASNQSSEDSRFPGR 296
Query: 253 GRTLQMSAIPV 263
GRTL + P
Sbjct: 297 GRTLSTARDPA 307
>gi|219112025|ref|XP_002177764.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410649|gb|EEC50578.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 304
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
+RI TSA H +++HL NM ++G L + GT L L ++L+G+L +GI
Sbjct: 54 YRIATSALFHGNIMHLAMNMMTTLAIG---SLLEKRFGTFRLLLIILWSILLTGILYIGI 110
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
L + R +VG+S V+F + S +FGF +P P+ L+
Sbjct: 111 ALFLAIIIQKNQLMRQHSVGFSGVIFHLSVLESNLGTHQSRSVFGFFDVPSYLYPWVLLV 170
Query: 172 FTSIIVPQASFLGHLSGIIVGYAIAWG 198
I +P SF GHL GI+VG +G
Sbjct: 171 GLQIFMPGLSFTGHLVGILVGTLQLYG 197
>gi|255581586|ref|XP_002531598.1| Rhomboid protein, putative [Ricinus communis]
gi|223528794|gb|EEF30801.1| Rhomboid protein, putative [Ricinus communis]
Length = 397
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 15/211 (7%)
Query: 15 TSCIIGICSVIWFYIQKKNIGY-SHVGLSY-ETAVDGHH--WRIITSAFSHISVLHLVFN 70
TS I+ +C I Y+ IGY S + + +A+ H +RI TS H S+LH+ FN
Sbjct: 26 TSAIVIVCGTI--YLACLLIGYDSFFEICFLPSAIISHFQVYRIYTSILFHGSLLHVFFN 83
Query: 71 MSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR--FKLEYFRRVT 128
M AL LG +L + +G+ L T++L + + L I L+ ++
Sbjct: 84 MMALVPLG--SELERI-MGSVRLLYLTILLATSNAIFHLFIATLVAHNPFHSDQHLINEC 140
Query: 129 AVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSG 188
A+G+S ++F + I + +FG ++P + F L+ +++ S LGHL G
Sbjct: 141 AIGFSGILFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFILLVVFQLLMTNVSLLGHLCG 200
Query: 189 IIVGYAIAWGLIH----GMNNYWALSMLGWI 215
I+ G+A +GL + G + Y ++ W+
Sbjct: 201 ILSGFAYTYGLFNFLMPGSSFYSSIEASSWL 231
>gi|242033515|ref|XP_002464152.1| hypothetical protein SORBIDRAFT_01g013170 [Sorghum bicolor]
gi|241918006|gb|EER91150.1| hypothetical protein SORBIDRAFT_01g013170 [Sorghum bicolor]
Length = 396
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 13/194 (6%)
Query: 15 TSCIIGICSVIWFYIQKKNIGY-SHVGLSY-ETAVDGHH--WRIITSAFSHISVLHLVFN 70
TS ++ IC VI Y+ IGY S+ + + +AV H +R TS H S+LH++FN
Sbjct: 26 TSGVVLICGVI--YLLCLLIGYDSYAEICFLPSAVASHFQVYRFYTSVLFHGSLLHVLFN 83
Query: 71 MSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR--FKLEYFRRV 127
M AL LG +E++ +G+ L +L + +L L I L+ F +
Sbjct: 84 MLALVPLGTELERI----MGSVRLLFLMFLLATTNAILHLTIAFLVAYNPLFPVPNLVNE 139
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLS 187
++G+S V+F + I + +FG ++P + + L+ + S LGHL
Sbjct: 140 CSIGFSGVIFSMIVIETSLSGVQSRSVFGLFNVPAKWYAWILLVLFQFLASNVSLLGHLC 199
Query: 188 GIIVGYAIAWGLIH 201
GI+ G+A +GL +
Sbjct: 200 GILSGFAYTYGLFN 213
>gi|290978551|ref|XP_002671999.1| predicted protein [Naegleria gruberi]
gi|284085572|gb|EFC39255.1| predicted protein [Naegleria gruberi]
Length = 230
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
+ GI L Q F L ++G+S V+F ++TI S + LFG +S+P + P+
Sbjct: 70 ISGIMDGLAQFFGL----HECSIGFSGVIFSYLTIASTDTSQTTNSLFGMISVPSKYYPW 125
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGY 193
L+ TS + P +SF+GHL GII GY
Sbjct: 126 ILLLVTSFLFPSSSFVGHLFGIISGY 151
>gi|411003693|ref|ZP_11380022.1| hypothetical protein SgloC_12861 [Streptomyces globisporus C-1027]
Length = 301
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 19/182 (10%)
Query: 42 SYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLV 101
S E +G +R++TS F H V+HL FNM LW LG QL + LG + Y L L
Sbjct: 128 SVEGVAEGQWYRLVTSMFLHQEVVHLGFNMLGLWWLG--GQL-EAALGRSRY----LALY 180
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
+LSGL + +LL + + ++G S V+G +V D+ P
Sbjct: 181 LLSGLAGSALTYLLAAQNQ-------PSLGASGAVYGLFGATAVLMRRMNYDMR-----P 228
Query: 162 ISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVY 221
+ +L FT ++ H+ G+I G AIA G++H G LV +
Sbjct: 229 VLILLAVNLAFTFFNRDGIAWQAHVGGLIAGVAIAIGMVHAPRERRTAVQTGTCALVLLA 288
Query: 222 SL 223
SL
Sbjct: 289 SL 290
>gi|348577789|ref|XP_003474666.1| PREDICTED: rhomboid domain-containing protein 1-like [Cavia
porcellus]
Length = 309
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 19/160 (11%)
Query: 41 LSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWS-LGVVEQLGDVGLGTAYYLQYT 97
LS E W R++ S H HL FNM S LW + + +LG + + Y
Sbjct: 54 LSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMVSMLWKGINLERRLG------SRWFAYV 107
Query: 98 LVLVVLSGLLVLGIYHLLIQRFKLEY-----FRRVTAVGYSCVVFGWMTILSVKQPSSKL 152
L VL G+ +LL+Q E+ FRR AVG+S V+F + + P +
Sbjct: 108 LATFVL----FTGVVYLLLQVACAEFMDEPDFRRNCAVGFSGVLFALKVLNNHYCPGGFV 163
Query: 153 DLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
++ G +P A + L+ + P SF GHL+GI+VG
Sbjct: 164 NILG-CPVPNKLACWAELLAIHFLSPGTSFAGHLAGILVG 202
>gi|197304727|ref|NP_001127873.1| rhomboid domain containing 1 [Nasonia vitripennis]
Length = 246
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWR-IITSAFSHISVLHLVFNM 71
PAT + + S+++ + K V +S + WR + S F H S +HL +NM
Sbjct: 32 PATLLGMAVQSLLYAGMIKVPWNPEDVCISTLKILKHKDWRSFVVSNFEHGSDMHLYYNM 91
Query: 72 -SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI------QRFKLEY- 123
S L +E + GTA + +L GLL LG + + + +Y
Sbjct: 92 VSFLLKGSYLEPM----YGTANF-------ALLIGLLSLGCSSMYVFLGYALTQITTDYA 140
Query: 124 FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
+ A+G+S V+F I+ ++ D+ GF +P FA + L+ ++VP +SF+
Sbjct: 141 YYTSCAIGFSAVLFALKVIVVCEEHDRPTDVGGF-RVPSKFAVWAELVLIHLLVPNSSFI 199
Query: 184 GHLSGIIVG 192
GHL GI+VG
Sbjct: 200 GHLGGILVG 208
>gi|384252274|gb|EIE25750.1| rhomboid-domain-containing protein, partial [Coccomyxa
subellipsoidea C-169]
Length = 286
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 53 RIITSAFSHISVLHLVFNMSALW--SLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
R+ TSAF H +LH+ FNM A ++ + QLG + + + + L
Sbjct: 63 RLFTSAFFHAGLLHIGFNMLAFVPVAMSLERQLGSLQTLHLLLMLILVGDIFYISASYLA 122
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESL 170
+ L R L A+G S +FG + + + + +FG ++ + P+ L
Sbjct: 123 SFVLADARSYLA----SCAIGLSGAIFGLIVVDNACSGAQTRSIFGMFTVSAKWYPWALL 178
Query: 171 IFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
+F +++P SFLGHL G++ G A WG +
Sbjct: 179 VFWQLLMPGVSFLGHLGGVLAGQAYVWGWLR 209
>gi|449670102|ref|XP_002160201.2| PREDICTED: rhomboid-related protein 4-like [Hydra magnipapillata]
Length = 369
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 7/147 (4%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
R+I S+F H+ +HL FNM S +W +E+ + + YL + VL+ +++L +
Sbjct: 71 RLIYSSFYHLDDMHLYFNMVSFIWKGRNLER----RMKRSQYLVLLALFSVLTQVVMLLL 126
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
+L F + + A G+S V+F + +L+ + G + +P +A + L+
Sbjct: 127 NSILSFIFTNDVYLHSCAAGFSAVIFA-LKVLTTHNSIDYETVMGIV-VPSRYACWAELV 184
Query: 172 FTSIIVPQASFLGHLSGIIVGYAIAWG 198
I+VP SF GHL+GI+VG +G
Sbjct: 185 LIQIMVPNVSFTGHLAGILVGLMYIFG 211
>gi|154147965|ref|YP_001406479.1| rhomboid family protein [Campylobacter hominis ATCC BAA-381]
gi|153803974|gb|ABS50981.1| rhomboid family protein [Campylobacter hominis ATCC BAA-381]
Length = 177
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 10 MEKPATSCII-GICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLV 68
M+ T II IC + +++Q + GL+ +G +W+I+TS F H + H+
Sbjct: 1 MKATVTLIIINAICFLAAYFLQNSA---EYFGLNIFF-FNGAYWQILTSMFMHAGIFHIA 56
Query: 69 FNMSALWSLGVVEQ--LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRR 126
NM+ LW G + + LG + Y L+L +L+ +L L + R E
Sbjct: 57 MNMAVLWQFGTILEKFLGSLRFSLIY-----LILGILTNILCLAFVYFDFTR--GEIINV 109
Query: 127 VTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHL 186
V A G CV+FG I++ P + LF + L ISFAP ++ ++ HL
Sbjct: 110 VGASGAICVLFG---IVAFYDPRNAKGLF-LMILIISFAPL-------LLGVNIAWYAHL 158
Query: 187 SGIIVGY 193
G +GY
Sbjct: 159 LGFFLGY 165
>gi|242015304|ref|XP_002428304.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212512889|gb|EEB15566.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 287
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 19 IGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNMSALWSL 77
+GI +V W +K+ V +S + ++ W R+ SA H +HL FNM++
Sbjct: 45 MGIINVPW---EKE-----EVCISGNSIINDKDWKRLFLSAVEHGDDMHLYFNMASFLIK 96
Query: 78 GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVF 137
G + + G+ + L +++ L+ + + ++ + + A+G+S V+F
Sbjct: 97 G---RSLEARYGSKNFAIILTFLTIVTSLMYVILAFIMSNVMEATSYMDSCAIGFSGVIF 153
Query: 138 GWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ + ++P + L G + +P +A + LI ++VP +SF+GH +GI+ G
Sbjct: 154 ALKVLTTHEEPYIRAMLLG-VDIPGKYAAWVELIIIHMLVPNSSFMGHFAGILSG 207
>gi|380024431|ref|XP_003695999.1| PREDICTED: rhomboid domain-containing protein 1-like [Apis florea]
Length = 247
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 13/159 (8%)
Query: 50 HHWR-IITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLS--- 104
H W I S F H S +HL +NM +L G +E + + + ++L +LS
Sbjct: 69 HDWNSFIISNFEHGSDMHLYYNMVSLILKGSYLEPMYKT-------MNFIILLTILSFGC 121
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
+ +G+ ++L+Q + A+G+S ++F + ++ + + K+ G L +P
Sbjct: 122 STMYIGLSYVLMQLTGDYGYYVQCAIGFSAILFA-LKVIVICEEYDKIHDIGGLRVPSKI 180
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGM 203
A + LI ++VPQ+SF+GHL GI++G + I M
Sbjct: 181 AVWVELILIHLLVPQSSFIGHLGGILIGCLYCYTFIGEM 219
>gi|212722872|ref|NP_001131556.1| uncharacterized protein LOC100192896 [Zea mays]
gi|194691838|gb|ACF80003.1| unknown [Zea mays]
gi|414872100|tpg|DAA50657.1| TPA: hypothetical protein ZEAMMB73_465757 [Zea mays]
Length = 321
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 13/194 (6%)
Query: 15 TSCIIGICSVIWFYIQKKNIGY-SHVGLSY-ETAVDGHH--WRIITSAFSHISVLHLVFN 70
TS +I IC VI Y+ IGY S+V + + +AV H +R TS H S+LH++FN
Sbjct: 26 TSGVILICGVI--YLLCLLIGYDSYVEICFLPSAVASHFQVYRFYTSVLFHGSLLHVLFN 83
Query: 71 MSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR--FKLEYFRRV 127
M AL LG +E++ +G+ L L+L + +L L I L+ + +
Sbjct: 84 MLALVPLGTELERI----MGSVRLLFLMLLLATTNAILHLTIAFLVAYNPLYHVPNLVNE 139
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLS 187
++G+S V+F + I + +FG ++P + + L+ + S LGHL
Sbjct: 140 CSIGFSGVIFSMIVIETSLSGVQSRSVFGLFNVPAKWYAWILLVLFQFLASNVSLLGHLC 199
Query: 188 GIIVGYAIAWGLIH 201
GI+ G+A +GL +
Sbjct: 200 GILSGFAYTYGLFN 213
>gi|326508430|dbj|BAJ99482.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 13/149 (8%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLS-GLLVLGI 111
R SAF H+S H +NM++L G+ QL + +G+ + L+ LS G +L
Sbjct: 17 RFFLSAFYHLSETHFFYNMTSLLWKGI--QL-ETSMGSVEFASMVTALLGLSQGFTLLLS 73
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLS---LPISFAPFE 168
LL+ ++ Y+ + AVG+S V+FG +L+ D + FL +P +A +
Sbjct: 74 KGLLLLGNEVPYYDQY-AVGFSGVLFGMKIVLNAWS-----DDYVFLHGMVIPAKYAAWA 127
Query: 169 SLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
L+ +P SF+GHLSGI+ G A W
Sbjct: 128 ELLLIQAFIPGTSFIGHLSGILAGLAYLW 156
>gi|50752018|ref|XP_422616.1| PREDICTED: rhomboid domain-containing protein 1 [Gallus gallus]
Length = 317
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 9/182 (4%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM 71
P+ + + I +V +F + + +S + A +W R++ S H+ HL +NM
Sbjct: 28 PSVTLAVLILNVFFFLNPMRPL--HEACISVKEAFYRQNWQRLLLSPVHHVDDWHLYYNM 85
Query: 72 -SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAV 130
S LW +E+ LG+ ++ V VL+G++ + + +L++ + AV
Sbjct: 86 VSMLWKGITLER----KLGSMWFAYIIAVFSVLTGIVYVLLEFMLVKILNDPSYEMSCAV 141
Query: 131 GYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGII 190
G+S V+F + + P + G L + +A + L+ I P+ SF GHL+GI+
Sbjct: 142 GFSGVLFALKVLNNHYNPGRVSSVLG-LQISSKYACWVELVAIHFIAPRTSFAGHLAGIL 200
Query: 191 VG 192
VG
Sbjct: 201 VG 202
>gi|358248954|ref|NP_001240224.1| uncharacterized protein LOC100816495 [Glycine max]
gi|255640981|gb|ACU20770.1| unknown [Glycine max]
Length = 322
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSG--LLVL 109
R + S F HI HLV+NM S LW +E +G+ + L+VLS L+L
Sbjct: 77 RFLLSPFYHIGEPHLVYNMLSLLWKGFQLE----TSMGSVDFASIVASLLVLSQGVTLML 132
Query: 110 GIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFES 169
LL ++ Y+ + VG+S V+F +L+ Q + ++G + +P +A +
Sbjct: 133 SKSLLLFFDYERSYYSEYS-VGFSGVLFAMKVVLN-SQSENYTSVYGII-VPSRYAAWAE 189
Query: 170 LIFTSIIVPQASFLGHLSGIIVG 192
L+ ++VP SFLGHL GI+ G
Sbjct: 190 LVLAQLLVPGVSFLGHLGGILAG 212
>gi|356565565|ref|XP_003551010.1| PREDICTED: uncharacterized protein At3g17611-like [Glycine max]
Length = 332
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSG--LLVL 109
R + S F HI HLV+NM S LW +E +G+ + L+VLS L+L
Sbjct: 88 RFLLSPFYHIGEPHLVYNMLSLLWKGFQLE----TSMGSVNFSSMVASLLVLSQGVTLML 143
Query: 110 GIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFES 169
LL ++ Y+ + VG+S V+F +L+ Q + ++G + +P +A +
Sbjct: 144 SKSLLLFFDYERSYYSEYS-VGFSGVLFAMKVVLN-SQSENYTSVYGVI-VPSRYAAWAE 200
Query: 170 LIFTSIIVPQASFLGHLSGIIVG 192
L+ ++VP SFLGHL GI+ G
Sbjct: 201 LVLAQLLVPGVSFLGHLGGILAG 223
>gi|300120076|emb|CBK19630.2| unnamed protein product [Blastocystis hominis]
Length = 152
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
+++GLL + IY LL F V A G+S V+F + +++ L +FG S+P
Sbjct: 10 IINGLLYVLIYKLL--SLINSSFLYVAAAGFSGVIFSLLLVMTYVIDVDTLSIFGLFSVP 67
Query: 162 ISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSM 211
+ LI S+++P SF+GHL GI+ GY +G ++ WA+ M
Sbjct: 68 RKWYAIIYLILMSVLIPGVSFIGHLCGILSGYLFVFGYLN-----WAIPM 112
>gi|397733720|ref|ZP_10500434.1| rhomboid family protein [Rhodococcus sp. JVH1]
gi|396930518|gb|EJI97713.1| rhomboid family protein [Rhodococcus sp. JVH1]
Length = 305
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 77/181 (42%), Gaps = 35/181 (19%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
VDG R++ S F H ++HL NM ALW +G +L LG A Y V + L
Sbjct: 126 VDGQIVRVLGSGFLHFGIIHLAVNMFALWVIGRDTEL---VLGRARY-----ACVYFASL 177
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
L +L Q VTA G S VFG M +V L L S AP
Sbjct: 178 LGGSAAVMLFQ------LGAVTA-GASGAVFGLMGAQAVI----------LLRLRRSPAP 220
Query: 167 FESLI----FTSIIVPQASFLGHLSGIIVGYAIAWGLIHGM------NNYWALSMLGWIV 216
S+I SI +P S GHL G++ G A G+++G NN +GW+
Sbjct: 221 VISVIAINVIISITIPGISLWGHLGGLVAGAAATAGILYGPQLLGVGNNREKAVTVGWVC 280
Query: 217 L 217
L
Sbjct: 281 L 281
>gi|367004200|ref|XP_003686833.1| hypothetical protein TPHA_0H01940 [Tetrapisispora phaffii CBS 4417]
gi|357525135|emb|CCE64399.1| hypothetical protein TPHA_0H01940 [Tetrapisispora phaffii CBS 4417]
Length = 269
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 86/174 (49%), Gaps = 16/174 (9%)
Query: 53 RIITSAFSHISVLHLVFNMSALWS-LGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
R++ +H+S+ HL+FN AL++ L E GT Y +L V++G++ +
Sbjct: 55 RLLLYPLAHLSIPHLLFNCFALFTPLNAFEATH----GTVYTFIMLNILSVVTGVIYCVV 110
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTIL-SVKQPSSKLDLFGFLSLPISFAPFESL 170
H L + A G+ +F + ++ S +P++ L F +++P P +L
Sbjct: 111 GHWLYPTVAI-----AGASGWCFTLFAYFSVRESTVKPTTTL-FFANITIPTILDPVVTL 164
Query: 171 IFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLK 224
+ ++++P +SF GHL G++VGY + W I + + + WI+ F LK
Sbjct: 165 VVIALLIPGSSFWGHLFGLLVGYLMGWKEII----FRMVVIPSWIITYFESKLK 214
>gi|414872102|tpg|DAA50659.1| TPA: hypothetical protein ZEAMMB73_465757 [Zea mays]
Length = 390
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 13/194 (6%)
Query: 15 TSCIIGICSVIWFYIQKKNIGY-SHVGLSY-ETAVDGHH--WRIITSAFSHISVLHLVFN 70
TS +I IC VI Y+ IGY S+V + + +AV H +R TS H S+LH++FN
Sbjct: 26 TSGVILICGVI--YLLCLLIGYDSYVEICFLPSAVASHFQVYRFYTSVLFHGSLLHVLFN 83
Query: 71 MSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR--FKLEYFRRV 127
M AL LG +E++ +G+ L L+L + +L L I L+ + +
Sbjct: 84 MLALVPLGTELERI----MGSVRLLFLMLLLATTNAILHLTIAFLVAYNPLYHVPNLVNE 139
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLS 187
++G+S V+F + I + +FG ++P + + L+ + S LGHL
Sbjct: 140 CSIGFSGVIFSMIVIETSLSGVQSRSVFGLFNVPAKWYAWILLVLFQFLASNVSLLGHLC 199
Query: 188 GIIVGYAIAWGLIH 201
GI+ G+A +GL +
Sbjct: 200 GILSGFAYTYGLFN 213
>gi|414872101|tpg|DAA50658.1| TPA: hypothetical protein ZEAMMB73_465757 [Zea mays]
Length = 381
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 13/194 (6%)
Query: 15 TSCIIGICSVIWFYIQKKNIGY-SHVGLSY-ETAVDGHH--WRIITSAFSHISVLHLVFN 70
TS +I IC VI Y+ IGY S+V + + +AV H +R TS H S+LH++FN
Sbjct: 26 TSGVILICGVI--YLLCLLIGYDSYVEICFLPSAVASHFQVYRFYTSVLFHGSLLHVLFN 83
Query: 71 MSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR--FKLEYFRRV 127
M AL LG +E++ +G+ L L+L + +L L I L+ + +
Sbjct: 84 MLALVPLGTELERI----MGSVRLLFLMLLLATTNAILHLTIAFLVAYNPLYHVPNLVNE 139
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLS 187
++G+S V+F + I + +FG ++P + + L+ + S LGHL
Sbjct: 140 CSIGFSGVIFSMIVIETSLSGVQSRSVFGLFNVPAKWYAWILLVLFQFLASNVSLLGHLC 199
Query: 188 GIIVGYAIAWGLIH 201
GI+ G+A +GL +
Sbjct: 200 GILSGFAYTYGLFN 213
>gi|419967548|ref|ZP_14483436.1| rhomboid family protein [Rhodococcus opacus M213]
gi|424859689|ref|ZP_18283671.1| rhomboid family protein [Rhodococcus opacus PD630]
gi|356661133|gb|EHI41465.1| rhomboid family protein [Rhodococcus opacus PD630]
gi|414567056|gb|EKT77861.1| rhomboid family protein [Rhodococcus opacus M213]
Length = 305
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 78/181 (43%), Gaps = 35/181 (19%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
VDG R++ S F H ++HL NM ALW +G +L LG A Y V +L G
Sbjct: 126 VDGQIVRVLGSGFLHFGIIHLAVNMFALWVIGRDTEL---VLGRARYACVYFV-SLLGGS 181
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
+ ++ L VTA G S VFG M +V L L S AP
Sbjct: 182 AAVMLFQL----------GAVTA-GASGAVFGLMGAQAVI----------LLRLRRSPAP 220
Query: 167 FESLI----FTSIIVPQASFLGHLSGIIVGYAIAWGLIHGM------NNYWALSMLGWIV 216
S+I SI +P S GHL G++ G A G+++G NN +GWI
Sbjct: 221 VISVIAVNVIISITIPGISLWGHLGGLVAGAAATAGILYGPQLLGAGNNREKAITVGWIC 280
Query: 217 L 217
L
Sbjct: 281 L 281
>gi|223942663|gb|ACN25415.1| unknown [Zea mays]
gi|414872103|tpg|DAA50660.1| TPA: rhomboid family protein [Zea mays]
Length = 396
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 13/194 (6%)
Query: 15 TSCIIGICSVIWFYIQKKNIGY-SHVGLSY-ETAVDGHH--WRIITSAFSHISVLHLVFN 70
TS +I IC VI Y+ IGY S+V + + +AV H +R TS H S+LH++FN
Sbjct: 26 TSGVILICGVI--YLLCLLIGYDSYVEICFLPSAVASHFQVYRFYTSVLFHGSLLHVLFN 83
Query: 71 MSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR--FKLEYFRRV 127
M AL LG +E++ +G+ L L+L + +L L I L+ + +
Sbjct: 84 MLALVPLGTELERI----MGSVRLLFLMLLLATTNAILHLTIAFLVAYNPLYHVPNLVNE 139
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLS 187
++G+S V+F + I + +FG ++P + + L+ + S LGHL
Sbjct: 140 CSIGFSGVIFSMIVIETSLSGVQSRSVFGLFNVPAKWYAWILLVLFQFLASNVSLLGHLC 199
Query: 188 GIIVGYAIAWGLIH 201
GI+ G+A +GL +
Sbjct: 200 GILSGFAYTYGLFN 213
>gi|384107096|ref|ZP_10007998.1| rhomboid family protein [Rhodococcus imtechensis RKJ300]
gi|383833031|gb|EID72500.1| rhomboid family protein [Rhodococcus imtechensis RKJ300]
Length = 305
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 78/181 (43%), Gaps = 35/181 (19%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
VDG R++ S F H ++HL NM ALW +G +L LG A Y V +L G
Sbjct: 126 VDGQIVRVLGSGFLHFGIIHLAVNMFALWVIGRDTEL---VLGRARYACVYFV-SLLGGS 181
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
+ ++ L VTA G S VFG M +V L L S AP
Sbjct: 182 AAVMLFQL----------GAVTA-GASGAVFGLMGAQAVI----------LLRLRRSPAP 220
Query: 167 FESLI----FTSIIVPQASFLGHLSGIIVGYAIAWGLIHGM------NNYWALSMLGWIV 216
S+I SI +P S GHL G++ G A G+++G NN +GWI
Sbjct: 221 VISVIAVNVIISITIPGISLWGHLGGLVAGAAATAGILYGPQLLGAGNNREKAITVGWIC 280
Query: 217 L 217
L
Sbjct: 281 L 281
>gi|195627118|gb|ACG35389.1| rhomboid family protein [Zea mays]
Length = 396
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 13/194 (6%)
Query: 15 TSCIIGICSVIWFYIQKKNIGY-SHVGLSY-ETAVDGHH--WRIITSAFSHISVLHLVFN 70
TS +I IC VI Y+ IGY S+V + + +AV H +R TS H S+LH++FN
Sbjct: 26 TSGVILICGVI--YLLCLLIGYDSYVEICFLPSAVASHFQVYRFYTSVLFHGSLLHVLFN 83
Query: 71 MSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR--FKLEYFRRV 127
M AL LG +E++ +G+ L L+L + +L L I L+ + +
Sbjct: 84 MLALVPLGTELERI----MGSVRLLFLMLLLATTNAILHLTIAFLVAYNPLYHVPNLVNE 139
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLS 187
++G+S V+F + I + +FG ++P + + L+ + S LGHL
Sbjct: 140 CSIGFSGVIFSMIVIETSLSGVQSRSVFGLFNVPAKWYAWILLVLFQFLASNVSLLGHLC 199
Query: 188 GIIVGYAIAWGLIH 201
GI+ G+A +GL +
Sbjct: 200 GILSGFAYTYGLFN 213
>gi|345307084|ref|XP_001505522.2| PREDICTED: rhomboid domain-containing protein 1-like
[Ornithorhynchus anatinus]
Length = 318
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 41 LSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTL 98
+S E + W R++ S F H HL FNM S LW +E+ LG+ +
Sbjct: 54 ISVEECFEQGDWQRLLLSPFHHADDWHLYFNMVSMLWKGMKLEKR----LGSGKFAIIIA 109
Query: 99 VLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL 158
VL G++ + + L + ++ AVG+S V+F + + P ++L GF
Sbjct: 110 SFSVLIGIVYMILEFALAEFLAEPAYKMQCAVGFSGVLFALKVLNNHYHPGGSINLMGF- 168
Query: 159 SLPIS--FAPFESLIFTSIIVPQASFLGHLSGIIVG 192
P+S ++ + L+ ++ P SF GHL+GI+VG
Sbjct: 169 --PVSNRYSCWVELVAIHLLSPGTSFAGHLAGILVG 202
>gi|405979365|ref|ZP_11037709.1| hypothetical protein HMPREF9241_00432 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404392746|gb|EJZ87804.1| hypothetical protein HMPREF9241_00432 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 284
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR +T+AF H +H+ FNM AL+S+GV +EQ+ LG YL L+ + + L VL
Sbjct: 106 WRFLTTAFLHSGFMHIAFNMLALYSVGVELEQV----LGRTRYLSVYLLSAIGASLFVLA 161
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESL 170
+LIQ L VG S VFG + V Q S +D + L
Sbjct: 162 --WVLIQPSSLG----TVTVGASGAVFGLFGAMFVLQKQSGMDTRAVVGL------LLVN 209
Query: 171 IFTSIIVPQASFLGHLSGIIVGYAIAW 197
+ IVP S+ GH+ G+ G W
Sbjct: 210 LLIGFIVPNVSWQGHVGGLATGALATW 236
>gi|326489153|dbj|BAK01560.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 342
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 13/149 (8%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLS-GLLVLGI 111
R SAF H+S H +NM++L G+ QL + +G+ + L+ LS G +L
Sbjct: 90 RFFLSAFYHLSETHFFYNMTSLLWKGI--QL-ETSMGSVEFASMVTALLGLSQGFTLLLS 146
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLS---LPISFAPFE 168
LL+ ++ Y+ + AVG+S V+FG +L+ D + FL +P +A +
Sbjct: 147 KGLLLLGNEVPYYDQY-AVGFSGVLFGMKIVLNAWS-----DDYVFLHGMVIPAKYAAWA 200
Query: 169 SLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
L+ +P SF+GHLSGI+ G A W
Sbjct: 201 ELLLIQAFIPGTSFIGHLSGILAGLAYLW 229
>gi|328779994|ref|XP_001122441.2| PREDICTED: rhomboid domain-containing protein 1-like [Apis
mellifera]
Length = 247
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 13/159 (8%)
Query: 50 HHWR-IITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLS--- 104
H W I S F H S +HL +NM +L G +E + + + ++L +LS
Sbjct: 69 HDWNSFIISNFEHGSDMHLYYNMVSLILKGSYLEPMYKT-------MNFVILLTILSFGC 121
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
+ +G+ ++L+Q + A+G+S ++F + ++ + + ++ G L +P
Sbjct: 122 STMYIGLSYVLMQLTGDYGYYVQCAIGFSSILFA-LKVIVICEEYDRIHDVGGLRVPSKI 180
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGM 203
A + LI ++VPQ+SF+GHL GI++G + I M
Sbjct: 181 AVWVELILIHLLVPQSSFIGHLGGILIGCLYCYTFIGEM 219
>gi|344233876|gb|EGV65746.1| hypothetical protein CANTEDRAFT_112606 [Candida tenuis ATCC 10573]
Length = 284
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 6/78 (7%)
Query: 130 VGYSCVVFGWMTILSVK----QPSS-KLDLFGF-LSLPISFAPFESLIFTSIIVPQASFL 183
+G S ++F ++T +VK QP S + L G +SLP ++PF SL ++I P +SF
Sbjct: 129 IGLSGIIFSFVTYFAVKEHEFQPVSFRFPLNGTDISLPTKYSPFVSLAIVTVIFPGSSFF 188
Query: 184 GHLSGIIVGYAIAWGLIH 201
GHL+GI GY +A+G ++
Sbjct: 189 GHLAGISSGYLLAYGKLN 206
>gi|444321935|ref|XP_004181623.1| hypothetical protein TBLA_0G01600 [Tetrapisispora blattae CBS 6284]
gi|387514668|emb|CCH62104.1| hypothetical protein TBLA_0G01600 [Tetrapisispora blattae CBS 6284]
Length = 262
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 14/148 (9%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIY 112
R+ + H+S+ H++FN+ AL L + + T + YT VL+ +S + V G+
Sbjct: 55 RLSSYPLGHMSITHIIFNILALIPLLNIFE-------TTHGTLYTGVLLNISAV-VCGVM 106
Query: 113 HLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPS--SKLDLFGF-LSLPISFAPFES 169
+ + RF + V+ +G S F + +VK+ S + LFG S P P +
Sbjct: 107 YCVAGRF---LYPEVSVLGASGWGFTFFAYFAVKEASVRPRQRLFGTQYSFPTLIGPIVT 163
Query: 170 LIFTSIIVPQASFLGHLSGIIVGYAIAW 197
L +I VP +SF GHL G+I GY + W
Sbjct: 164 LALIAIFVPGSSFWGHLFGMIFGYFMGW 191
>gi|405975233|gb|EKC39814.1| Serine/threonine-protein kinase RIO2 [Crassostrea gigas]
Length = 670
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 124 FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
+R AVG+S V+F +++ PS L GF+ +P + + L+F +I P SF+
Sbjct: 500 YRLTCAVGFSGVIFALKVLVTHYSPSGTQYLMGFIPVPSKYIFWAELVFIQMITPNVSFV 559
Query: 184 GHLSGIIVG 192
GHL+GI+VG
Sbjct: 560 GHLAGILVG 568
>gi|255645151|gb|ACU23074.1| unknown [Glycine max]
Length = 234
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSG--LLVL 109
R + S F HI HLV+NM S LW +E +G+ + L+VLS L+L
Sbjct: 77 RFLLSPFYHIGEPHLVYNMLSLLWKGFQLE----TSMGSVDFASIVASLLVLSQGVTLML 132
Query: 110 GIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFES 169
LL ++ Y+ + VG+S V+F +L+ Q + ++G + +P +A +
Sbjct: 133 SKSLLLFFDYERSYYSEYS-VGFSGVLFAMKVVLN-SQSENYTSVYGII-VPSRYAAWAE 189
Query: 170 LIFTSIIVPQASFLGHLSGIIVG 192
L+ ++VP SFLGHL GI+ G
Sbjct: 190 LVLAQLLVPGVSFLGHLGGILAG 212
>gi|395823332|ref|XP_003784941.1| PREDICTED: rhomboid domain-containing protein 1 [Otolemur
garnettii]
Length = 316
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 7/154 (4%)
Query: 41 LSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTL 98
LS E + W R++ S H HL FNM S LW +E+ LG+ ++
Sbjct: 54 LSVEKCYEHRDWQRLLLSPLHHADDWHLYFNMVSMLWKGINLERR----LGSRWFACVIA 109
Query: 99 VLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL 158
+L+GL+ L + L + + RR AVG+S V+F + + P +++ GF
Sbjct: 110 TFSLLTGLVYLLLQFALAEFMREPELRRSCAVGFSGVLFALKVLNNHYFPGGFVNVLGF- 168
Query: 159 SLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+P FA + L+ + P SF GHL+GI+VG
Sbjct: 169 PVPNRFACWAELVAIHLFSPGTSFAGHLAGILVG 202
>gi|440717205|ref|ZP_20897696.1| glpG protein [Rhodopirellula baltica SWK14]
gi|436437672|gb|ELP31290.1| glpG protein [Rhodopirellula baltica SWK14]
Length = 329
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 44/179 (24%)
Query: 34 IGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAY 92
I Y+ G ++ + G WR++T AF H S +HLVFNM AL++LG VVE+L ++
Sbjct: 172 IDYATTGDAWVSIKKGEIWRLVTPAFLHGSTMHLVFNMMALFTLGSVVERLHG-----SW 226
Query: 93 YLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKL 152
+L S LLV I +++Q ++ AVG S VFG
Sbjct: 227 FLA--------SLLLVSHIIGMIVQVVLPDWLESPMAVGASGAVFG-------------- 264
Query: 153 DLFGFL--------SLPISFAPFESLIFTSIIVPQASFL-------GHLSGIIVGYAIA 196
+FGF+ S P+ PF + + + L H+ G++ G A+A
Sbjct: 265 -VFGFIWIRPRFQPSYPVGIPPFNVYLMLGFMFACMTPLIQGIANGAHVGGLLTGMAVA 322
>gi|408825539|ref|ZP_11210429.1| hypothetical protein SsomD4_00040 [Streptomyces somaliensis DSM
40738]
Length = 292
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 73/163 (44%), Gaps = 19/163 (11%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
DG +RI+TS F H V H+ FNM LW LG + LG Y L L +LSGL
Sbjct: 124 ADGEWYRILTSVFLHQEVWHIGFNMLGLWMLGGPLE---AALGRVRY----LALYLLSGL 176
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
+ ++L+ + ++G S VFG M V + D L L I+
Sbjct: 177 AGSALTYVLVAPNQ-------PSLGASGAVFGLMGATFVLLRRLRYDPRPVLGL-IALNV 228
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWAL 209
+ +F I QA HL G++ G +A+G++ G AL
Sbjct: 229 LITFVFRDTIAWQA----HLGGLVAGAVVAYGMVSGSRGKRAL 267
>gi|345851676|ref|ZP_08804644.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
gi|345636882|gb|EGX58421.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
Length = 295
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 19/174 (10%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
+G WR++TS F+H +V H FNM +LW LG + LG A Y L L SGL
Sbjct: 127 AEGEWWRLVTSMFTHEAVWHFAFNMLSLWWLGGPL---EAALGRARY----LALYFCSGL 179
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
+LL ++G S +FG +V + D+ ++L +
Sbjct: 180 AGSAFTYLLAD-------PHTASLGASGAIFGLFGATAVLLRRLQYDMRPIIALLVI--- 229
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFV 220
+LIFT S+ H+ G++ G I + ++H AL G LV
Sbjct: 230 --NLIFTFAPGFNISWQAHIGGLVAGVIIGYAMVHAPRERRALVQYGTCALVLA 281
>gi|421615034|ref|ZP_16056072.1| glpG protein [Rhodopirellula baltica SH28]
gi|408494207|gb|EKJ98827.1| glpG protein [Rhodopirellula baltica SH28]
Length = 329
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 79/180 (43%), Gaps = 46/180 (25%)
Query: 34 IGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQL-GDVGLGTA 91
I Y+ G ++ + G WR++T AF H S +HLVFNM AL++LG VVE+L G LG
Sbjct: 172 IDYATTGDAWVSIKKGEIWRLVTPAFLHGSTMHLVFNMMALFTLGSVVERLHGSWFLG-- 229
Query: 92 YYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSK 151
S LLV I +++Q ++ AVG S VFG
Sbjct: 230 ------------SLLLVSHIIGMIVQVVLPDWLESPMAVGASGAVFG------------- 264
Query: 152 LDLFGFL--------SLPISFAPFESLIFTSIIVPQASFL-------GHLSGIIVGYAIA 196
+FGF+ S P+ PF + + + L H+ G++ G A+A
Sbjct: 265 --VFGFIWIRPRFQPSYPVGIPPFNVYLMLGFMFACMTPLIQGIANGAHVGGLLTGMAVA 322
>gi|410910522|ref|XP_003968739.1| PREDICTED: rhomboid-related protein 4-like [Takifugu rubripes]
Length = 321
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 10/143 (6%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
R++ S H HL FNM S LW +E+ LG A++L V +L+G++ L +
Sbjct: 67 RLLLSPLHHADDFHLYFNMVSFLWKGVRLERR----LGGAWFLYLLSVFSLLTGVVYLAL 122
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS--FAPFES 169
LL + + + + AVG+S V+F I + P + G LPIS +A +
Sbjct: 123 ETLLAELTQDQSYNMQCAVGFSGVLFALKVINNHYYPGGTTYVMG---LPISNRYASWVE 179
Query: 170 LIFTSIIVPQASFLGHLSGIIVG 192
L+ I P S +GHLSGI+VG
Sbjct: 180 LVLIHITAPGTSLIGHLSGIVVG 202
>gi|417304444|ref|ZP_12091465.1| glpG protein [Rhodopirellula baltica WH47]
gi|327539221|gb|EGF25844.1| glpG protein [Rhodopirellula baltica WH47]
Length = 340
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 44/179 (24%)
Query: 34 IGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAY 92
I Y+ G ++ + G WR++T AF H S +HLVFNM AL++LG VVE+L ++
Sbjct: 183 IDYATTGDAWVSIKKGEIWRLVTPAFLHGSTMHLVFNMMALFTLGSVVERLHG-----SW 237
Query: 93 YLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKL 152
+L S LLV I +++Q ++ AVG S VFG
Sbjct: 238 FLA--------SLLLVSHIIGIIVQVVLPDWLESPMAVGASGAVFG-------------- 275
Query: 153 DLFGFL--------SLPISFAPFESLIFTSIIVPQASFL-------GHLSGIIVGYAIA 196
+FGF+ S P+ PF + + + L H+ G++ G A+A
Sbjct: 276 -VFGFIWIRPRFQPSYPVGIPPFNVYLMLGFMFACMTPLIQGIANGAHVGGLLTGMAVA 333
>gi|387018080|gb|AFJ51158.1| Rhomboid domain-containing protein 1-like [Crotalus adamanteus]
Length = 310
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 8/170 (4%)
Query: 25 IWFYIQK-KNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
I+F++Q K + + + ++Y H R+ SAF H HL FNM S LW +E
Sbjct: 39 IFFFLQPLKPLDKACISVNYCLYKKDWH-RLYLSAFHHADDWHLYFNMVSLLWKGIKLES 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LGT ++ + +L G + + + +L + + AVG+S V+F +
Sbjct: 98 R----LGTMWFGYIIALFSLLVGAVYIFLEAVLAELLGNPSYEHHCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P ++ G L++ ++ + L+ ++ PQ+SF GHL+GI+VG
Sbjct: 154 NNYYHPGGSTNIMG-LNVSNKYSCWLELLAIHLLNPQSSFAGHLAGILVG 202
>gi|218187998|gb|EEC70425.1| hypothetical protein OsI_01431 [Oryza sativa Indica Group]
Length = 348
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIY 112
R SAF H+S H FNMS+L G+ QL + +G+ + L+ +S + L +
Sbjct: 91 RFFLSAFYHLSETHFFFNMSSLLWKGI--QL-ETSMGSVEFASMVAALLGMSQGITLLLS 147
Query: 113 HLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLS---LPISFAPFES 169
L+ E + AVG+S V+FG +L+ D + FL +P +A +
Sbjct: 148 KGLLLFGNDEAYYDQYAVGFSGVLFGMKVVLNAWS-----DDYVFLHGVVIPAKYAAWAE 202
Query: 170 LIFTSIIVPQASFLGHLSGIIVGYAIAW 197
L+ +P S +GHL GI+ G A W
Sbjct: 203 LLLIQAFIPGTSLIGHLGGILAGLAYLW 230
>gi|115436016|ref|NP_001042766.1| Os01g0283500 [Oryza sativa Japonica Group]
gi|13486724|dbj|BAB39959.1| OSJNBa0004B13.13 [Oryza sativa Japonica Group]
gi|13486740|dbj|BAB39974.1| unknown protein [Oryza sativa Japonica Group]
gi|15408827|dbj|BAB64219.1| unknown protein [Oryza sativa Japonica Group]
gi|113532297|dbj|BAF04680.1| Os01g0283500 [Oryza sativa Japonica Group]
gi|222618217|gb|EEE54349.1| hypothetical protein OsJ_01336 [Oryza sativa Japonica Group]
Length = 350
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIY 112
R SAF H+S H FNMS+L G+ QL + +G+ + L+ +S + L +
Sbjct: 93 RFFLSAFYHLSETHFFFNMSSLLWKGI--QL-ETSMGSVEFASMVAALLGMSQGITLLLS 149
Query: 113 HLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLS---LPISFAPFES 169
L+ E + AVG+S V+FG +L+ D + FL +P +A +
Sbjct: 150 KGLLLFGNDEAYYDQYAVGFSGVLFGMKVVLNAWS-----DDYVFLHGVVIPAKYAAWAE 204
Query: 170 LIFTSIIVPQASFLGHLSGIIVGYAIAW 197
L+ +P S +GHL GI+ G A W
Sbjct: 205 LLLIQAFIPGTSLIGHLGGILAGLAYLW 232
>gi|226528725|ref|NP_001140801.1| uncharacterized protein LOC100272876 [Zea mays]
gi|194701136|gb|ACF84652.1| unknown [Zea mays]
gi|195636066|gb|ACG37501.1| rhomboid domain containing 1 [Zea mays]
gi|413946850|gb|AFW79499.1| Rhomboid domain containing 1 [Zea mays]
Length = 344
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
+G R S F H+S HL +NM++L G+ QL + +G+ + L+ LS +
Sbjct: 81 NGDLVRFFLSPFYHLSESHLFYNMTSLLWKGI--QL-ETSMGSVEFASMVAALLGLSQGI 137
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
L + L+ + AVG+S V+F +L+ S + +P +A +
Sbjct: 138 ALLLSKGLLLLGDYTAYYDQYAVGFSGVLFAMKVVLNAW--SEDFVYLHGMVIPAKYAAW 195
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSML 212
LI + +P SFLGHLSGI+ G W L +N L++L
Sbjct: 196 AELILIQVFIPGTSFLGHLSGILAGLVYLW-LKRALNGPDPLTLL 239
>gi|432333562|ref|ZP_19585328.1| rhomboid family protein [Rhodococcus wratislaviensis IFP 2016]
gi|430779509|gb|ELB94666.1| rhomboid family protein [Rhodococcus wratislaviensis IFP 2016]
Length = 249
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 78/181 (43%), Gaps = 35/181 (19%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
VDG R++ S F H ++HL NM ALW +G +L LG A Y V +L G
Sbjct: 70 VDGQIVRVLGSGFLHFGIIHLAVNMFALWVIGRDTEL---VLGRARYACVYFV-SLLGGS 125
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
+ ++ L VTA G S VFG M +V L L S AP
Sbjct: 126 AAVMLFQL----------GAVTA-GASGAVFGLMGAQAVI----------LLRLRRSPAP 164
Query: 167 FESLI----FTSIIVPQASFLGHLSGIIVGYAIAWGLIHGM------NNYWALSMLGWIV 216
S+I SI +P S GHL G++ G A G+++G NN +GWI
Sbjct: 165 VISVIAVNVIISITIPGISLWGHLGGLVAGAAATAGILYGPQLLGAGNNREKAITVGWIC 224
Query: 217 L 217
L
Sbjct: 225 L 225
>gi|302853316|ref|XP_002958174.1| hypothetical protein VOLCADRAFT_99376 [Volvox carteri f.
nagariensis]
gi|300256535|gb|EFJ40799.1| hypothetical protein VOLCADRAFT_99376 [Volvox carteri f.
nagariensis]
Length = 373
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 7/155 (4%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
D +R T+ H +LH+ FNM A +G + GT L + L+ L G++
Sbjct: 83 DYQVYRFFTAVLVHGGLLHVTFNMLAFVPIGASLERAA---GTWQLLHFMLLSCFLEGVI 139
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM----TILSVKQPSSKLDLFGFLSLPIS 163
+ LL + AVG+S V+FG + +LS SS +FG +P
Sbjct: 140 YAVVSGLLAASGLVHGALFHGAVGFSGVIFGLLVWDSALLSSSSSSSHRSIFGLFHVPAP 199
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
+ P+ L+ +++P+AS LGHL+G++VG WG
Sbjct: 200 WYPWVLLLLCQLMLPEASLLGHLAGLLVGQLWVWG 234
>gi|327267037|ref|XP_003218309.1| PREDICTED: rhomboid domain-containing protein 1-like [Anolis
carolinensis]
Length = 317
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 6/141 (4%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
R+ SAF H HL FNM S LW +E+ LG+ ++ + VL G++ + +
Sbjct: 70 RLYLSAFHHADDWHLYFNMVSLLWKGIKLERR----LGSMWFGYIITLFSVLVGIVYMIL 125
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
L + + F + AVG+S V+F + + P L G + + +A + LI
Sbjct: 126 EFTLAELLENPSFIQSCAVGFSGVLFALKVLNNYYHPGGSSSLMG-IYVSNKYACWVELI 184
Query: 172 FTSIIVPQASFLGHLSGIIVG 192
++ P +SF GHL+GI+VG
Sbjct: 185 AIHLLSPGSSFAGHLAGILVG 205
>gi|319937466|ref|ZP_08011871.1| hypothetical protein HMPREF9488_02707 [Coprobacillus sp. 29_1]
gi|319807306|gb|EFW03915.1| hypothetical protein HMPREF9488_02707 [Coprobacillus sp. 29_1]
Length = 213
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 37/218 (16%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIW-----FYIQKKNI-------GYSHVGLSYETAVD 48
M L + P TS +I +C VI+ Y ++ N+ GY+ V + ++
Sbjct: 1 MKNQLLKQYKRAPVTSVLIALCVVIYVISFLLYGEEMNVYEGMAFGGYNPVFVQ----LN 56
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
++R+IT+ F H ++H+ N +L+ +G+ + + +Y +VL + S L
Sbjct: 57 HEYYRLITANFIHFGIIHIAVNCYSLYGIGMFIE------SSLKPKKYCIVLFI-SALAT 109
Query: 109 LGIYHLL--IQRFKLEYFRRVTAVGYSCVVFGW---MTILSVKQPSSKLDLFGFLSLPIS 163
G+ +LL I F+ + G S V+FG + L++K LD+F L+ +
Sbjct: 110 TGLPYLLYLINGFE----ANTVSGGISGVIFGLIGALGALALKYRDIFLDVFRQLAPNLL 165
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
++F S++VP S GH++G+I G+ + ++H
Sbjct: 166 L-----MLFISVVVPSISLSGHVAGMIGGFIATYIILH 198
>gi|291438500|ref|ZP_06577890.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291341395|gb|EFE68351.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 296
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 21/174 (12%)
Query: 41 LSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLV 99
L E DG +R+ TS F+H ++ H+ FNM LW L G +EQ LG A Y L
Sbjct: 122 LPTEGVADGEWYRLFTSMFTHEAIWHIAFNMLGLWWLGGPLEQ----ALGRARY----LA 173
Query: 100 LVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLS 159
L ++SGL + +LL +G S +FG ++V D+ ++
Sbjct: 174 LYLISGLAGSALTYLLAS-------GTTATLGASGAIFGLFGAMAVLMRRLDYDMRPIIA 226
Query: 160 LPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLG 213
L + +LIFT ++ H+ G++ G I + ++H AL G
Sbjct: 227 LLVI-----NLIFTFSPGFNIAWQAHIGGLVAGVVIGYAMVHAPRERRALIQYG 275
>gi|20093492|ref|NP_613339.1| membrane serine protease [Methanopyrus kandleri AV19]
gi|19886321|gb|AAM01269.1| Predicted membrane serine protease of the Rhomboid superfamily
[Methanopyrus kandleri AV19]
Length = 210
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 23/173 (13%)
Query: 29 IQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGL 88
I + ++ YS+ GL Y + H +IT F H +++HL+FNM L + GV QL V L
Sbjct: 24 IIRPDVLYSY-GL-YLHNITVHPECLITYMFLHANLIHLLFNMLGLLTFGV--QLERV-L 78
Query: 89 GTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQP 148
T+ + LVL +LSGL+ + V VG S +FG + L++ +P
Sbjct: 79 STSEF----LVLYLLSGLMG--------GLAQTALTPDVPVVGASAAIFGLLGCLTMLRP 126
Query: 149 SSKLDLFGFLSLPIS-----FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
S + +F F+ +P++ +A + S +V Q + GHL G+IVG +A
Sbjct: 127 MSMM-MFLFIPMPLALFAVLYAALALFVIQSGVVTQVAHAGHLVGMIVGGVLA 178
>gi|395533706|ref|XP_003768895.1| PREDICTED: uncharacterized protein LOC100925524 [Sarcophilus
harrisii]
Length = 305
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 50 HHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVL 109
H W ++ + H + HL N+ LW G +L +GT L + +G L L
Sbjct: 157 HWWLLLLAPVHHENPWHLACNVVGLWLTGRRLELS---VGTGLLLVLMTSAALFTGFLHL 213
Query: 110 GIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFES 169
+ + + +R A+G+S V+F M ++S SS+ L G L L ++ ES
Sbjct: 214 ALNLAMEVTLQESSYRADCALGFSGVLFA-MQVMS----SSENSLVGNLLLCLA----ES 264
Query: 170 LIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWA 208
L+ S P+ SF GHL+G++VG A WG + +++ A
Sbjct: 265 LV-ASYFAPKVSFSGHLTGVLVGLAYRWGPMRDLSHTGA 302
>gi|242057071|ref|XP_002457681.1| hypothetical protein SORBIDRAFT_03g011570 [Sorghum bicolor]
gi|241929656|gb|EES02801.1| hypothetical protein SORBIDRAFT_03g011570 [Sorghum bicolor]
Length = 344
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIY 112
R S F H+S HL +NM++L G+ QL + +G+ + L+ LS + L +
Sbjct: 86 RFFLSPFYHLSESHLFYNMTSLLWKGI--QL-ETSMGSVEFASMVAALLGLSQGITLLLS 142
Query: 113 HLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIF 172
L+ + AVG+S V+F +L+ S + +P +A + LI
Sbjct: 143 KGLLLLGDYTAYYNQYAVGFSGVLFAMKVVLNAW--SEDFVYLHGMVIPAKYAAWAELIL 200
Query: 173 TSIIVPQASFLGHLSGIIVGYAIAW 197
+ +P SFLGHLSGI+ G W
Sbjct: 201 IQVFIPGTSFLGHLSGILAGLVYLW 225
>gi|381394664|ref|ZP_09920376.1| hypothetical protein GPUN_1385 [Glaciecola punicea DSM 14233 = ACAM
611]
gi|379329631|dbj|GAB55509.1| hypothetical protein GPUN_1385 [Glaciecola punicea DSM 14233 = ACAM
611]
Length = 211
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 42/173 (24%)
Query: 37 SHVGLSYETAV-DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQ 95
+++GL Y V DG +WR+I+S F H S+LH+ FNM L+ LG QL + LG+
Sbjct: 33 TNMGLLYGPLVQDGQYWRMISSGFLHGSILHIAFNMYLLYMLG--PQL-ESALGSV---- 85
Query: 96 YTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLF 155
RF L YF + + + FG+M ++ + L L
Sbjct: 86 ----------------------RFSLMYFGALIGGTLAVLSFGFMQP-TLGASGAVLGLA 122
Query: 156 GFLSLPI---SFAPFESLIFT--------SIIVPQASFLGHLSGIIVGYAIAW 197
G + + + +P +S +F +++P SF GH G++ G A+A+
Sbjct: 123 GAMFITLWGRGISPTKSPVFGLVVLNLGLPLLIPGISFWGHFGGVVAGGALAY 175
>gi|383847955|ref|XP_003699618.1| PREDICTED: rhomboid domain-containing protein 1-like [Megachile
rotundata]
Length = 247
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 13/169 (7%)
Query: 50 HHWR-IITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLS--- 104
W+ I S F H S +HL +NM +L G +E + GT + + ++L VLS
Sbjct: 69 RDWKSFIISNFEHGSDMHLYYNMVSLILKGSYLEPM----YGT---MNFVILLAVLSFGC 121
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
+ + + L+Q + A+G+S V+F + ++ V + ++ G L +P
Sbjct: 122 SAMYTSLGYALMQLTGDYGYYTQCAIGFSAVLFA-LKVIVVCEEQDRIHDVGGLRVPSKI 180
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLG 213
A + LI ++VPQ+SF+GHL GI+VG + + M + +M G
Sbjct: 181 AVWVELILIHLLVPQSSFVGHLGGILVGCLYCYTFVGEMIDNLIYTMSG 229
>gi|255556632|ref|XP_002519350.1| conserved hypothetical protein [Ricinus communis]
gi|223541665|gb|EEF43214.1| conserved hypothetical protein [Ricinus communis]
Length = 325
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 6/146 (4%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
DG R SAF H+ HLV+NM +L G+ QL + +G+ + L+ +S +
Sbjct: 71 DGDLKRFFLSAFYHVGESHLVYNMMSLLWKGI--QL-ETSMGSVEFASMVAALLTMSQGI 127
Query: 108 VLGIYHLLIQRFKL-EYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
L + L+ F F AVG+S V+F +L+ Q + + G L +P A
Sbjct: 128 TLLLAKSLLLFFDYGRPFYSEYAVGFSGVLFAMKVVLN-SQSDNYTHVHG-LVVPARHAA 185
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVG 192
+ LI + VP SFLGHL GI+ G
Sbjct: 186 WAELILIQMFVPGVSFLGHLGGILAG 211
>gi|406603411|emb|CCH45089.1| Rhomboid protein 2 [Wickerhamomyces ciferrii]
Length = 369
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 159 SLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
SLP F PF LI SII+P +SF GHL G+I GYA+A+G
Sbjct: 243 SLPTIFTPFGPLILISIILPGSSFFGHLFGLIAGYALAFG 282
>gi|256823918|ref|YP_003147878.1| membrane protein [Kytococcus sedentarius DSM 20547]
gi|256687311|gb|ACV05113.1| uncharacterized membrane protein [Kytococcus sedentarius DSM 20547]
Length = 306
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 26/211 (12%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
+G F + + P T +IGIC +W +Q + G D WR +TSAF
Sbjct: 75 LGGRRFGNLGDMPVTYGLIGICVGVWV-LQLLFPRLTLEGAFVPGLADSEPWRFLTSAFL 133
Query: 61 HIS--VLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
H +HL+FNM ALW++G + + LG + Y + V L L
Sbjct: 134 HDPSGPMHLMFNMFALWTVGGYLEKLLGQLRFAALYLVSGFGGGVGSLLLSA---PPDLE 190
Query: 117 QRFKLEYFRRVTAVGYSCVVFG-WMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSI 175
R ++F +VG S VFG ++ +L V + + P +LI ++
Sbjct: 191 ARSVGDWFS--PSVGASGAVFGLFLALLVVDHARGR-----------TITPMLALIAVNL 237
Query: 176 IV----PQASFLGHLSGIIVGYAIAWGLIHG 202
++ P + HL G + G IAWG+ G
Sbjct: 238 VIGFVYPNIEWQAHLGGAVTGAVIAWGMTRG 268
>gi|297200957|ref|ZP_06918354.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197712264|gb|EDY56298.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length = 294
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 92/219 (42%), Gaps = 36/219 (16%)
Query: 15 TSCIIGICSVIWFYIQKKNIGYSHVGL----------SYETAVDGHHWRIITSAFSHISV 64
T +IGI ++ IQ K + + L E DG ++R++TS F+H +
Sbjct: 85 TKILIGINVAVFIAIQAKASLATDLSLVGAWPPAPFQPTEGVADGQYYRLVTSMFAHQEI 144
Query: 65 LHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYF 124
H+ FNM +LW LG + LG A YL V SGL + +LL
Sbjct: 145 WHIGFNMMSLWWLGGPL---EAALGRARYLTVYFV----SGLAGGALAYLLAS------- 190
Query: 125 RRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFT---SIIVPQAS 181
+G S +FG +V DL ++L + +LIFT S I QA
Sbjct: 191 PSTATLGASGAIFGLFGATAVLMRRLNYDLRPIIALLVI-----NLIFTFSWSGISWQAH 245
Query: 182 FLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFV 220
G ++G+I GY G++H AL G LV +
Sbjct: 246 IGGLVAGLITGY----GMVHAPRERRALVQYGTSALVLL 280
>gi|108710127|gb|ABF97922.1| expressed protein [Oryza sativa Japonica Group]
Length = 379
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 17/158 (10%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
+R TS H S+LH++FNM AL LG +E++ +G+ L +L +
Sbjct: 65 YRFYTSVVFHGSLLHVLFNMLALVPLGTELERI----MGSVRLLFLMFLLATTNA----- 115
Query: 111 IYHLLIQ-------RFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
I+HL+I + L + ++G+S V+F + I + +FG ++P +
Sbjct: 116 IFHLIIAFLAAYNPLYPLHFLVDECSIGFSGVIFSMIVIETSLSGVQTRSVFGLFNVPAN 175
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
+ + L+ + S LGHL GI+ G+A +GL +
Sbjct: 176 WYAWILLVLFQFLASNVSLLGHLCGILSGFAYTYGLFN 213
>gi|413934803|gb|AFW69354.1| hypothetical protein ZEAMMB73_186009 [Zea mays]
Length = 345
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIY 112
R S F H+S HL +NM++L G+ + +G+A + VL+ LS + L +
Sbjct: 86 RFFLSPFYHLSESHLFYNMTSLLWKGIHLE---TSMGSAEFASMVAVLLGLSQGITLLLS 142
Query: 113 HLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLS---LPISFAPFES 169
L+ + AVG+S V+F +L+ D F +L +P +A +
Sbjct: 143 RGLLLLGDDTMYYDQHAVGFSGVLFAMKVVLNAWS-----DDFVYLHGMVIPAKYAAWAE 197
Query: 170 LIFTSIIVPQASFLGHLSGIIVGYAIAW 197
LI + +P SFLGHL GI+ G W
Sbjct: 198 LILIQVFIPGTSFLGHLGGILAGLVYLW 225
>gi|31712095|gb|AAP68399.1| unknown protein [Oryza sativa Japonica Group]
gi|108710126|gb|ABF97921.1| expressed protein [Oryza sativa Japonica Group]
gi|218193411|gb|EEC75838.1| hypothetical protein OsI_12827 [Oryza sativa Indica Group]
gi|222625474|gb|EEE59606.1| hypothetical protein OsJ_11927 [Oryza sativa Japonica Group]
Length = 399
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 17/158 (10%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
+R TS H S+LH++FNM AL LG +E++ +G+ L +L +
Sbjct: 65 YRFYTSVVFHGSLLHVLFNMLALVPLGTELERI----MGSVRLLFLMFLLATTNA----- 115
Query: 111 IYHLLIQ-------RFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
I+HL+I + L + ++G+S V+F + I + +FG ++P +
Sbjct: 116 IFHLIIAFLAAYNPLYPLHFLVDECSIGFSGVIFSMIVIETSLSGVQTRSVFGLFNVPAN 175
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
+ + L+ + S LGHL GI+ G+A +GL +
Sbjct: 176 WYAWILLVLFQFLASNVSLLGHLCGILSGFAYTYGLFN 213
>gi|62733420|gb|AAX95537.1| Putative Rhomboid family protein [Oryza sativa Japonica Group]
Length = 393
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 17/158 (10%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
+R TS H S+LH++FNM AL LG +E++ +G+ L +L +
Sbjct: 59 YRFYTSVVFHGSLLHVLFNMLALVPLGTELERI----MGSVRLLFLMFLLATTNA----- 109
Query: 111 IYHLLIQ-------RFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
I+HL+I + L + ++G+S V+F + I + +FG ++P +
Sbjct: 110 IFHLIIAFLAAYNPLYPLHFLVDECSIGFSGVIFSMIVIETSLSGVQTRSVFGLFNVPAN 169
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
+ + L+ + S LGHL GI+ G+A +GL +
Sbjct: 170 WYAWILLVLFQFLASNVSLLGHLCGILSGFAYTYGLFN 207
>gi|32472115|ref|NP_865109.1| glpG protein [Rhodopirellula baltica SH 1]
gi|32397487|emb|CAD72793.1| probable glpG protein [Rhodopirellula baltica SH 1]
Length = 340
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 78/180 (43%), Gaps = 46/180 (25%)
Query: 34 IGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQL-GDVGLGTA 91
I Y+ G ++ + G WR++T AF H S +HLVFNM AL++LG VVE+L G LG
Sbjct: 183 IDYATTGDAWVSIKKGEIWRLVTPAFLHGSTMHLVFNMMALFTLGSVVERLHGSWFLG-- 240
Query: 92 YYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSK 151
S LL I +++Q ++ AVG S VFG
Sbjct: 241 ------------SLLLASHIIGMIVQVVLPDWLESPMAVGASGAVFG------------- 275
Query: 152 LDLFGFL--------SLPISFAPFESLIFTSIIVPQASFL-------GHLSGIIVGYAIA 196
+FGF+ S P+ PF + + + L H+ G++ G A+A
Sbjct: 276 --VFGFIWIRPRFQPSYPVGIPPFNVYLMLGFMFACMTPLIQGIANGAHVGGLLTGMAVA 333
>gi|357119970|ref|XP_003561705.1| PREDICTED: uncharacterized protein At3g58460-like [Brachypodium
distachyon]
Length = 403
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 13/194 (6%)
Query: 15 TSCIIGICSVIWFYIQKKNIGY-SHVGLSY-ETAVDGHH--WRIITSAFSHISVLHLVFN 70
TS +I IC I Y+ IGY S+ + + +AV H +R TS H S+LH++FN
Sbjct: 26 TSGVILICGAI--YLVCLLIGYDSYREICFLPSAVASHFQVYRFYTSVLFHGSLLHVLFN 83
Query: 71 MSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR--FKLEYFRRV 127
M L LG +E++ +G+ L +L + +L L + L+ + +
Sbjct: 84 MLTLAPLGTELERI----MGSVRLLFLMFLLATTNAVLHLIVAFLVAYNPLYPVPSLVDE 139
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLS 187
++G+S V+F + I + +FG ++P + + LI + S LGHLS
Sbjct: 140 CSIGFSGVLFSMIVIETSLSGVQSRSVFGLFNIPAKWYAWILLILFQFLASNVSLLGHLS 199
Query: 188 GIIVGYAIAWGLIH 201
GI+ G+A +GL +
Sbjct: 200 GILSGFAYTYGLFN 213
>gi|397569632|gb|EJK46866.1| hypothetical protein THAOC_34449 [Thalassiosira oceanica]
Length = 246
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 101 VVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSL 160
++L+G + + I LL F LE A G+S V+F + S P+ +FG ++
Sbjct: 24 ILLTGAIYISISWLLFAVFGLEKMMLQHAAGFSGVIFQLSVLESNLSPNRTRSVFGVFTV 83
Query: 161 PISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
P+ L+ +++P SFLGHLSGI++G
Sbjct: 84 SSRMYPWALLVAIQLVMPHISFLGHLSGILIG 115
>gi|255083188|ref|XP_002504580.1| predicted protein [Micromonas sp. RCC299]
gi|226519848|gb|ACO65838.1| predicted protein [Micromonas sp. RCC299]
Length = 381
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 94/190 (49%), Gaps = 12/190 (6%)
Query: 11 EKPATSCIIGICSVIWFYIQKKNIGYS--HVGLSYETAVD-GHHWRIITSAFSHISVLHL 67
+ P T ++G + + F +G S + LS V+ G +RI+TS S+ +HL
Sbjct: 65 KPPVTLAVMGASAALHFGFLNLPMGTSAAEMCLSAGAIVEAGQFYRILTSFLSYGDEMHL 124
Query: 68 VFNMSA-LWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKL-EYFR 125
++N+S+ LW +E + +G+ + + + L+V + + +G+ + + + E +R
Sbjct: 125 IYNLSSFLWKGANLE----IKMGSEKFTKLLIGLLVCTNAMAVGVMYAMAAYLGMPEAYR 180
Query: 126 RVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQ-ASFLG 184
+G + V F TIL + +S + G +++P +A + L ++ P A +
Sbjct: 181 NSCVMGNNGVNFALKTILFADE-ASNTSMLG-ITMPSKWASWAELGLMYLMYPHTAGLVV 238
Query: 185 HLSGIIVGYA 194
H+ GI+VG A
Sbjct: 239 HVCGILVGLA 248
>gi|328870427|gb|EGG18801.1| methionyl-tRNA synthetase beta subunit [Dictyostelium fasciculatum]
Length = 277
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 37/148 (25%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
WR+ITS HI++LHL+FNM A L + G+ Y LV ++ S L+ + I
Sbjct: 67 WRLITSTLFHINLLHLLFNMMAFIPF---STLLENSCGSVLYGYLMLVFMITSSLMAVII 123
Query: 112 YHLLIQRFKLEYFRRVTAVGYSC------VVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165
+ + Y+ TA+ YSC VVF +T+ +++ P SF
Sbjct: 124 SNTI-------YWIDPTAISYSCTIGLSGVVFLLVTVNC-----------HWVTTPRSF- 164
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVGY 193
I+ PQ+SF+GHL GI+ Y
Sbjct: 165 ---------ILFPQSSFIGHLGGIVAAY 183
>gi|326500926|dbj|BAJ95129.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 401
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 23/199 (11%)
Query: 15 TSCIIGICSVIWFYIQKKNIGY-SHVGLSY-ETAVDGHH--WRIITSAFSHISVLHLVFN 70
TS + IC+ I Y+ IGY S+ + + +AV H +R TS H S+LH++FN
Sbjct: 26 TSGVTIICAAI--YLVCLLIGYDSYAEICFLPSAVASHFQVYRFYTSVLFHGSLLHVLFN 83
Query: 71 MSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQ-------RFKLE 122
M LG +E++ +G+ L +L + I+HL++ + +
Sbjct: 84 MLTFVPLGTELERI----MGSVRLLFLMFLLATTNA-----IFHLIVAFLVDYNPLYHVS 134
Query: 123 YFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASF 182
Y ++G+S V+F + I + +FG ++P + + LI + S
Sbjct: 135 YLVDECSIGFSGVIFSMIVIETSLSGVQYRSVFGLFNVPAKWYAWILLILFQFLASNVSL 194
Query: 183 LGHLSGIIVGYAIAWGLIH 201
LGHLSGI+ G+A +GL +
Sbjct: 195 LGHLSGILSGFAYTYGLFN 213
>gi|398784354|ref|ZP_10547618.1| hypothetical protein SU9_14461 [Streptomyces auratus AGR0001]
gi|396995277|gb|EJJ06295.1| hypothetical protein SU9_14461 [Streptomyces auratus AGR0001]
Length = 303
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 25/175 (14%)
Query: 35 GYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYL 94
GY VG++ +G +R++T+ F H V H+ FNM +LW LG + LG A +
Sbjct: 128 GYHLVGVA-----EGEWYRLLTAMFLHQQVAHIAFNMLSLWWLGPPLE---AALGRARF- 178
Query: 95 QYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
+ L +L+GL + + L + + ++G S +FG + +V + D+
Sbjct: 179 ---IALYLLAGLGGSALSYFLAAQNQ-------PSLGASGAIFGLLGATAVLLRRLRYDM 228
Query: 155 FGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWAL 209
P+ +L+FT + P ++ H+ G++VG A+A+G++H + AL
Sbjct: 229 K-----PVLILLGLNLVFT-FLWPNIAWQAHVGGLVVGAAVAFGMVHAPRDRRAL 277
>gi|358462907|ref|ZP_09173011.1| Peptidase S54, rhomboid domain protein [Frankia sp. CN3]
gi|357071027|gb|EHI80658.1| Peptidase S54, rhomboid domain protein [Frankia sp. CN3]
Length = 400
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 16/91 (17%)
Query: 15 TSCIIGICSVIWF-----------YIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHIS 63
T +IG+C V + I + I YS +G+ + A+D +WR++T+AF H S
Sbjct: 188 TKILIGLCLVAYVLQGVPGLTGTSRINQFTIDYSLIGV--KIALDDEYWRLVTAAFLHGS 245
Query: 64 VLHLVFNMSALWSLGVVEQLGDVGLGTAYYL 94
VLH++FNM AL+ LG QL V LG A YL
Sbjct: 246 VLHILFNMYALFLLGT--QLEAV-LGRARYL 273
>gi|283787942|ref|YP_003367807.1| hypothetical protein ROD_44001 [Citrobacter rodentium ICC168]
gi|282951396|emb|CBG91095.1| putative membrane protein [Citrobacter rodentium ICC168]
Length = 276
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 23/162 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITS 57
P F + E+ P T I+ +C ++ +I + IGY V ++ ++ WR T
Sbjct: 84 PFFATLRERAGPVTWFIMALCVLV--FIVQSLIGYQTVMAWLAWPFDPSLKFEVWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
AF H S++H++FN+ W L G VE+ LG+ + T++ +LSG +
Sbjct: 142 AFMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITVISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL 158
Q+F +F ++ V Y+ + + W+ V+ P S + L G L
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GVRDPQSGIYLQGGL 229
>gi|429758897|ref|ZP_19291409.1| peptidase, S54 family [Actinomyces sp. oral taxon 181 str. F0379]
gi|429172593|gb|EKY14141.1| peptidase, S54 family [Actinomyces sp. oral taxon 181 str. F0379]
Length = 264
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 21/189 (11%)
Query: 15 TSCIIGICSVIWF-YIQKKNIGYSHVGLSYETAVDG--HHWRIITSAFSHISVLHLVFNM 71
T IIG+C +W I K + ++G T + G WRI+T+AF H++++H+ FNM
Sbjct: 51 TYAIIGVCVALWVGDILTKGVITQYLGF---TPIHGLYQPWRILTTAFLHVNLMHIAFNM 107
Query: 72 SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVG 131
+L+++G + + LG Y L+ + L VLG + L+ L VG
Sbjct: 108 VSLYAIG---RALEPALGRGPYFCLYLLSALGGTLGVLG-WVLIDPSSALT-----VTVG 158
Query: 132 YSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIV 191
S +FG + V Q ++ +D+ + L + IV S+ HL G++
Sbjct: 159 ASGAIFGLFGSVFVLQRAAGIDVRAVVGL------LAVNLLYGFIVSGVSWQAHLGGLLF 212
Query: 192 GYAIAWGLI 200
G WG++
Sbjct: 213 GMLATWGML 221
>gi|224107010|ref|XP_002314342.1| predicted protein [Populus trichocarpa]
gi|222863382|gb|EEF00513.1| predicted protein [Populus trichocarpa]
Length = 328
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIY 112
R + S F H+S HLV+NM +L G+ QL + +G+ + L+ +S + L +
Sbjct: 75 RFLLSPFYHVSDSHLVYNMMSLLWKGI--QL-ETSVGSVEFASMLAALLAMSQGITLLLA 131
Query: 113 HLLIQRFKLEY-FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
L+ F + F + G+S V+F +L+ Q S +++G L +P A + LI
Sbjct: 132 RSLLLFFDYDKPFYSEYSAGFSGVLFAMKVVLN-SQSESLTNVYG-LVIPARHAAWAELI 189
Query: 172 FTSIIVPQASFLGHLSGIIVG 192
+ VP SFLGHL GI+ G
Sbjct: 190 LIQMFVPGVSFLGHLGGILAG 210
>gi|350397339|ref|XP_003484847.1| PREDICTED: rhomboid domain-containing protein 1-like [Bombus
impatiens]
Length = 247
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 7/145 (4%)
Query: 50 HHWR-IITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
H W + S F H S +HL +NM +L G +E + GT ++ +L +
Sbjct: 69 HDWNSFLISNFEHGSDMHLYYNMVSLILKGSYLEPM----YGTINFVMLLAILSFGCSTM 124
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
G+ + L+Q + A+G+S ++F I+ ++ D+ GF + A +
Sbjct: 125 YAGLGYALMQLTGDYGYYTQCAIGFSAILFALKVIVVCEEYDRIQDVGGF-RVSSKIAVW 183
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVG 192
LI ++VPQ+SF+GHL GI+VG
Sbjct: 184 VELILIHLLVPQSSFIGHLGGILVG 208
>gi|115379487|ref|ZP_01466582.1| rhomboid family protein [Stigmatella aurantiaca DW4/3-1]
gi|310822642|ref|YP_003955000.1| rhomboid family protein [Stigmatella aurantiaca DW4/3-1]
gi|115363496|gb|EAU62636.1| rhomboid family protein [Stigmatella aurantiaca DW4/3-1]
gi|309395714|gb|ADO73173.1| Rhomboid family protein [Stigmatella aurantiaca DW4/3-1]
Length = 236
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 67/159 (42%), Gaps = 24/159 (15%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
G WR++T AF H +HL+FNMSA ++LG + +G+ +L +LV V S
Sbjct: 75 QGQPWRVLTYAFEHGGPIHLLFNMSAAFTLGPSL---ERAIGSWRFLGLSLVTCVGSAAF 131
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
L L F + T VG S ++ GW+ L P G L I+
Sbjct: 132 AL-----------LFDFDQPT-VGASGMILGWLGALLPIAPGYTRRQLGLWLLQIALI-- 177
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNY 206
++P S+ GHL G++ G L G Y
Sbjct: 178 -------SLIPGVSWAGHLGGVLFGLPCGLALKMGKAVY 209
>gi|401623399|gb|EJS41500.1| rbd2p [Saccharomyces arboricola H-6]
Length = 262
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 20/160 (12%)
Query: 61 HISVLHLVFNMSALWS-LGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
H+S+ HL+FN+ A+W+ L + E+ GT Y T V + LS L GI + L+ +
Sbjct: 63 HLSLPHLLFNVLAIWAPLNLFEETH----GTVY----TGVFLNLSALFA-GILYCLLGKL 113
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVK-QPSSKLDLFGFLSLPISFAPFESLIFTSIIVP 178
A G+ +F + + + +P ++L S+P + P LI ++IVP
Sbjct: 114 LYPGVFVAGASGWCFTLFAYYSYKESQVRPRTRL-FHTEYSVPTLYTPIALLIAIAVIVP 172
Query: 179 QASFLGHLSGIIVGYAIAWGLIHGMNNYW--ALSMLGWIV 216
+SF GH G+ VGYAI G W ++ GWI+
Sbjct: 173 GSSFWGHFFGLCVGYAI------GYKESWFHKITPPGWII 206
>gi|326925844|ref|XP_003209118.1| PREDICTED: rhomboid domain-containing protein 1-like [Meleagris
gallopavo]
Length = 317
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 7/154 (4%)
Query: 41 LSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTL 98
+S A +W R++ S H+ HL +NM S LW ++E+ +G+ ++
Sbjct: 54 ISVREAFYRQNWQRLLLSPVHHVDDWHLYYNMISMLWKGIMLERR----VGSVWFAYIIA 109
Query: 99 VLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL 158
V VL+G++ + + +L++ + AVG+S V+F + + P + G L
Sbjct: 110 VFSVLTGIVYVLLELMLVKILNDPSYEMSCAVGFSGVLFALKVLNNHYNPGRVSSVLG-L 168
Query: 159 SLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ +A + L+ I P SF GHL+GI+VG
Sbjct: 169 QISSKYACWVELVAIHFISPGTSFAGHLAGILVG 202
>gi|315446599|ref|YP_004079478.1| hypothetical protein Mspyr1_51170 [Mycobacterium gilvum Spyr1]
gi|315264902|gb|ADU01644.1| uncharacterized membrane protein [Mycobacterium gilvum Spyr1]
Length = 279
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 92/209 (44%), Gaps = 22/209 (10%)
Query: 15 TSCIIGICSVIWFYIQKKNIGYSHV-GLSYETAVDGHHWRIITSAFSHISVLHLVFNMSA 73
T +IGI +++ F +Q + G GL DG +R++TSAF H + HL FNM A
Sbjct: 70 TYALIGI-NLLAFALQMASPGLQRAFGLWSPAVADGEMYRLLTSAFLHFGLTHLAFNMLA 128
Query: 74 LWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYS 133
L+ +G + LG A ++ LV + +LV L F +TA G S
Sbjct: 129 LYFVGPPL---EAALGRARFVTLYLVSALGGSVLVY-----------LLTFNALTA-GAS 173
Query: 134 CVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI--FTSIIVPQASFLGHLSGIIV 191
VFG V +D+ +++ + F LI FTS + S+ GH+ G++
Sbjct: 174 GAVFGLFGATFVVGRKLNMDVRSVMAIIVLNLAFTFLIPLFTSQNI---SWQGHIGGLVT 230
Query: 192 GYAIAWGLIHGMNNYWALSMLGWIVLVFV 220
G +A ++ L G V + V
Sbjct: 231 GALVAAAFVYAPRAQRTLVQTGATVAILV 259
>gi|225432236|ref|XP_002270713.1| PREDICTED: uncharacterized protein At3g17611 [Vitis vinifera]
gi|147864086|emb|CAN81122.1| hypothetical protein VITISV_038478 [Vitis vinifera]
gi|297736839|emb|CBI26040.3| unnamed protein product [Vitis vinifera]
Length = 328
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 8/142 (5%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIY 112
R + S F H+ HLV+NM +L G+ QL + +G+A + L+ +S + L +
Sbjct: 76 RFLLSPFYHMDEAHLVYNMMSLLWKGI--QL-ETSMGSAEFASMVATLLGMSQGITLLLA 132
Query: 113 HLLIQRFKLE--YFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESL 170
L+ F E Y+ + AVG+S V+F +L+ + S+ L +P A + L
Sbjct: 133 KSLLLFFDYERAYYSQF-AVGFSGVLFAMKVVLNSQ--SADYTYVHGLIVPTRHAAWVEL 189
Query: 171 IFTSIIVPQASFLGHLSGIIVG 192
I + VP SFLGHL GI+ G
Sbjct: 190 ILIQMFVPGVSFLGHLGGILAG 211
>gi|151942556|gb|EDN60902.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190407719|gb|EDV10984.1| rhomboid protease [Saccharomyces cerevisiae RM11-1a]
gi|207340765|gb|EDZ69014.1| YPL246Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270648|gb|EEU05813.1| Rbd2p [Saccharomyces cerevisiae JAY291]
gi|259149911|emb|CAY86714.1| Rbd2p [Saccharomyces cerevisiae EC1118]
gi|323302636|gb|EGA56442.1| Rbd2p [Saccharomyces cerevisiae FostersB]
gi|323306904|gb|EGA60188.1| Rbd2p [Saccharomyces cerevisiae FostersO]
gi|323335253|gb|EGA76542.1| Rbd2p [Saccharomyces cerevisiae Vin13]
gi|323346079|gb|EGA80369.1| Rbd2p [Saccharomyces cerevisiae Lalvin QA23]
gi|349581576|dbj|GAA26733.1| K7_Rbd2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365762680|gb|EHN04213.1| Rbd2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 262
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 20/168 (11%)
Query: 61 HISVLHLVFNMSALWS-LGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
H+S+ HL+FN+ A+W+ L + E+ GT Y T V + LS L GI + L+ +
Sbjct: 63 HLSLPHLLFNVLAIWAPLNLFEETH----GTVY----TGVFLNLSALFA-GILYCLLGKL 113
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVK-QPSSKLDLFGFLSLPISFAPFESLIFTSIIVP 178
A G+ +F + + + +P +++ + S+P + P L+ ++++P
Sbjct: 114 LYPEVLVAGASGWCFTLFAYYSFKESQIRPRTRIFRTDY-SIPTLYTPLVLLVAIAVVIP 172
Query: 179 QASFLGHLSGIIVGYAIAWGLIHGMNNYW--ALSMLGWIVLVFVYSLK 224
+SF GH G+ VGYAI G W ++ GWI+ SL
Sbjct: 173 GSSFWGHFFGLCVGYAI------GYKESWFNKITPPGWIITKIEKSLD 214
>gi|6325010|ref|NP_015078.1| Rbd2p [Saccharomyces cerevisiae S288c]
gi|74583829|sp|Q12270.1|RBD2_YEAST RecName: Full=Rhomboid protein 2
gi|1061243|emb|CAA91598.1| putative protein [Saccharomyces cerevisiae]
gi|1370507|emb|CAA97967.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285815299|tpg|DAA11191.1| TPA: Rbd2p [Saccharomyces cerevisiae S288c]
gi|392296043|gb|EIW07146.1| Rbd2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 262
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 20/168 (11%)
Query: 61 HISVLHLVFNMSALWS-LGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
H+S+ HL+FN+ A+W+ L + E+ GT Y T V + LS L GI + L+ +
Sbjct: 63 HLSLPHLLFNVLAIWAPLNLFEETH----GTVY----TGVFLNLSALFA-GILYCLLGKL 113
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVK-QPSSKLDLFGFLSLPISFAPFESLIFTSIIVP 178
A G+ +F + + + +P +++ + S+P + P L+ ++++P
Sbjct: 114 LYPEALVAGASGWCFTLFAYYSFKESQIRPRTRIFRTDY-SIPTLYTPLVLLVAIAVVIP 172
Query: 179 QASFLGHLSGIIVGYAIAWGLIHGMNNYW--ALSMLGWIVLVFVYSLK 224
+SF GH G+ VGYAI G W ++ GWI+ SL
Sbjct: 173 GSSFWGHFFGLCVGYAI------GYKESWFNKITPPGWIITKIEKSLD 214
>gi|345007980|ref|YP_004810334.1| rhomboid family protein [Streptomyces violaceusniger Tu 4113]
gi|344034329|gb|AEM80054.1| Rhomboid family protein [Streptomyces violaceusniger Tu 4113]
Length = 294
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 26/177 (14%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
+G WR++TS F H ++H+ FNM +LW +G + LG + +VL +LSGL
Sbjct: 126 AEGQWWRLVTSIFLHQQLIHIAFNMLSLWWIGGPL---EAALGRVRF----IVLYILSGL 178
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
+ +LL + + ++G S +FG + +V D+ ++L ++
Sbjct: 179 GGSALSYLLAAQNQ-------PSLGASGAIFGLLGATAVLMRRLNYDMRPVIAL-LAL-- 228
Query: 167 FESLIFT---SIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFV 220
+L+FT S I QA H+ G++ G +A+G++H AL G LV +
Sbjct: 229 --NLLFTFTWSGIAWQA----HVGGLVAGTVVAYGMVHAPREKRALVQRGTCALVLL 279
>gi|381179391|ref|ZP_09888244.1| Rhomboid family protein [Treponema saccharophilum DSM 2985]
gi|380768686|gb|EIC02672.1| Rhomboid family protein [Treponema saccharophilum DSM 2985]
Length = 229
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 15/168 (8%)
Query: 3 RPLFYEIMEKPATSCIIGICSVIWFYIQKKN---IGYSHVGLSYETAVDGH-HWRIITSA 58
RP Y K AT II I +V++F N +G + ++ V W+ +T
Sbjct: 11 RPFRYSF--KNATLSIIAINAVVYFLFNFTNLIPVGEDYFSINVVGFVFHQCFWQPLTYM 68
Query: 59 FSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLL-- 115
F H ++ HL FNM L G+ VE+ LG+ ++ LV+ VLSGL +G+Y+ L
Sbjct: 69 FMHGNIQHLFFNMLGLLFFGMQVER----ALGSKEFVMMYLVVGVLSGLFSVGVYYALGA 124
Query: 116 --IQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
I + Y V+ VG S ++G + +V P S++ ++ + +P
Sbjct: 125 YMISQGMYPYTYLVSLVGASGAIYGILLAYAVIFPRSRIFVWFVIPVP 172
>gi|168008302|ref|XP_001756846.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692084|gb|EDQ78443.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 354
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 9/192 (4%)
Query: 6 FYEIMEKPA-TSCIIGICSVIWFYIQKKNIGY---SHVGLS-YETAVDGHHWRIITSAFS 60
F ++ KP T+ +I + ++I K + S V L+ Y D R+ SAF
Sbjct: 25 FMQLPRKPPVTAALIAVQTLIHLRPGKLDDALPTLSEVCLNPYFVIKDWDLKRLFLSAFY 84
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
H+ HLV+NM +L GV + G +G L L+ + S ++ +
Sbjct: 85 HVDETHLVYNMISLMWKGVQLE-GSMGSQKFAGLLAVLLGLSSSLVVASSSLLAFLADSP 143
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
++ AVG+S V+F +L+ PS +++G L +P +A + L+ + VP
Sbjct: 144 TSFYSEC-AVGFSGVLFALKVVLNYNSPS-HTNVYGIL-VPSRYAAWVELLVIQMFVPGT 200
Query: 181 SFLGHLSGIIVG 192
SFLGHL GI+ G
Sbjct: 201 SFLGHLCGILAG 212
>gi|168027437|ref|XP_001766236.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682450|gb|EDQ68868.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 330
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 15/173 (8%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIY 112
R+ SA H+ HLV+NM +L G+ QL + +G+ Y VL+ LS LV+
Sbjct: 65 RLWLSALYHVDETHLVYNMISLTWKGI--QLEN-SMGSQNYAAMVAVLLGLSSSLVVASS 121
Query: 113 HLL--IQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESL 170
L I ++ + VG+S V+F +L+ P+ +++G L +P +A + L
Sbjct: 122 SFLAFIADSPTSFYSECS-VGFSGVLFALKVVLNYNSPT-HTNVYGIL-VPSRYAAWVEL 178
Query: 171 IFTSIIVPQASFLGHLSGIIVG--YAIAWGLIHGMNNYWA-----LSMLGWIV 216
+ + VP SFLGHL GI+ G Y G++ G + W L L W V
Sbjct: 179 LVIQMFVPGTSFLGHLCGILAGLIYVNTPGVVSGTLSMWGVLPMMLGALSWPV 231
>gi|302843800|ref|XP_002953441.1| hypothetical protein VOLCADRAFT_94253 [Volvox carteri f.
nagariensis]
gi|300261200|gb|EFJ45414.1| hypothetical protein VOLCADRAFT_94253 [Volvox carteri f.
nagariensis]
Length = 412
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Query: 21 ICSVIWFYIQKKNIGYSHVGLSYETAVDGHH-WRIITSAFSHISVLHLVFNMSALWSLGV 79
+ + +W Y+ + V LS +D + R+ T++ +H+ + HL+ N+++L
Sbjct: 125 VAASVWRYLNP--VLLREVCLSPYCVIDRNEVGRLWTASLTHLDLPHLMSNLASLLPDAA 182
Query: 80 VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG---IYHLLIQRFKLEYFRRVTAVGYSCVV 136
V + + G+A ++ +L LS L +G + ++QR Y V AVG S +
Sbjct: 183 VLERQE---GSALFIADVALLSTLSSGLFVGWAVLEKQVLQRTGTYYA--VGAVGLSSLA 237
Query: 137 FGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSII-VPQASFLGHLSGIIVGYA 194
F + + + G L LP F+ SL FT ++ P SF GH+ G++ G A
Sbjct: 238 FALQVVADETRAGGERRCLG-LPLPGRFSWVLSLGFTHLVSAPDTSFAGHMCGVLAGIA 295
>gi|115454379|ref|NP_001050790.1| Os03g0651100 [Oryza sativa Japonica Group]
gi|62733419|gb|AAX95536.1| Putative Rhomboid family protein [Oryza sativa Japonica Group]
gi|113549261|dbj|BAF12704.1| Os03g0651100 [Oryza sativa Japonica Group]
Length = 222
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 36/220 (16%)
Query: 15 TSCIIGICSVIWFYIQKKNIGYSHVG----LSYETAVDGHHWRIITSAFSHISVLHLVFN 70
TS +I IC I Y+ GY L A +R TS H S+LH++FN
Sbjct: 26 TSGVILICGAI--YLVCLLTGYDSFAEICFLPSVVASRFQVYRFYTSVVFHGSLLHVLFN 83
Query: 71 MSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQ-------RFKLE 122
M AL LG +E++ +G+ L +L + I+HL+I + L
Sbjct: 84 MLALVPLGTELERI----MGSVRLLFLMFLLATTNA-----IFHLIIAFLAAYNPLYPLH 134
Query: 123 YFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASF 182
+ ++G+S V+F + I + +FG ++P ++ + L+ + S
Sbjct: 135 FLVDECSIGFSGVIFSMIVIETSLSGVQTRSVFGLFNVPANWYAWILLVLFQFLASNVSL 194
Query: 183 LGHLSGIIVGYAIAWGLIHGMNNYWALSMLG-WIVLVFVY 221
LGHL GI+ GY WA+ +L W +++F Y
Sbjct: 195 LGHLCGILSGY------------LWAVQLLASWTIILFFY 222
>gi|365862905|ref|ZP_09402633.1| Peptidase S54, rhomboid domain protein [Streptomyces sp. W007]
gi|364007635|gb|EHM28647.1| Peptidase S54, rhomboid domain protein [Streptomyces sp. W007]
Length = 308
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 99/232 (42%), Gaps = 40/232 (17%)
Query: 3 RPLFYEIMEKPAT--SCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
RP EI+++ A + + G ++Y GY G++ DG +R++T AF
Sbjct: 94 RP---EIVDRFAVLGAALTGPDGEQYYYRGDTYAGYELTGIA-----DGEWYRLVTGAFL 145
Query: 61 HI------SVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYH 113
H+ V+HLVFNM ALW++G VE LG A YL L+ V +LV +
Sbjct: 146 HLPPDASFGVMHLVFNMFALWNIGRAVEGQ----LGRARYLALYLLSAVGGSVLV----Y 197
Query: 114 LLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFT 173
LL + VG S VFG V D+ F L++
Sbjct: 198 LLAP--------DTSTVGASGAVFGLAAAYWVIHRRLGRDMAAVNRFMAGF-----LLWM 244
Query: 174 SIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNY--WALSMLGWIVLVFVYSL 223
I S+ GHL G++ G + +GL W + + G +VL ++++
Sbjct: 245 LISAAFTSWQGHLGGLLTGALVTYGLAFAPAKLRVWPVQLAGGVVLAGLFAV 296
>gi|374988154|ref|YP_004963649.1| hypothetical protein SBI_05398 [Streptomyces bingchenggensis BCW-1]
gi|297158806|gb|ADI08518.1| hypothetical protein SBI_05398 [Streptomyces bingchenggensis BCW-1]
Length = 295
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 37/209 (17%)
Query: 15 TSCIIGICSVIWFYIQKKNIGYSH----VGLSYETAV-------DGHHWRIITSAFSHIS 63
T +IG+ +WF + + VG +Y+ +G +R++T+ F H
Sbjct: 84 TKILIGLNLAVWFVALAIGDRFVNALDLVGRAYDPTAAGLVGVAEGQWYRLVTAMFLHQQ 143
Query: 64 VLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEY 123
H+ FNM +LW LG + LG A YL L L+GL + +LL + +
Sbjct: 144 AYHIAFNMLSLWWLGGPL---EAALGRARYLAVYL----LAGLGGSALSYLLAAQNQ--- 193
Query: 124 FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFT---SIIVPQA 180
++G S +FG + +V D+ ++L + +LIFT S I QA
Sbjct: 194 ----PSLGASGAIFGLLGATAVLMRRLNYDMRPVIALLVL-----NLIFTFAWSGIAWQA 244
Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNYWAL 209
H+ G++VG A+A+G++H AL
Sbjct: 245 ----HVGGLVVGTAVAYGMVHAPREKRAL 269
>gi|159470379|ref|XP_001693337.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277595|gb|EDP03363.1| predicted protein [Chlamydomonas reinhardtii]
Length = 249
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 127 VTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHL 186
AVG+S V+F +L+ QP + + GF LP + + L+ S + PQA F+GHL
Sbjct: 134 TCAVGFSAVLFALKVVLNYNQPGNS-SIMGF-ELPTKYLCWAELVLASYLTPQACFIGHL 191
Query: 187 SGIIVG 192
GI+ G
Sbjct: 192 GGILAG 197
>gi|357131656|ref|XP_003567452.1| PREDICTED: uncharacterized protein At3g17611-like [Brachypodium
distachyon]
Length = 345
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLS-GLLVLGI 111
R SAF H+S H +NM++L G+ QL + +G+ + L+ LS G+ +L
Sbjct: 90 RFFLSAFYHLSETHFFYNMTSLLWKGI--QL-ETSVGSVEFASMVAALLALSQGITLLLS 146
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLS---LPISFAPFE 168
LL+ + Y+ + AVG+S V+FG +L+ D + FL +P +A +
Sbjct: 147 KGLLLFGNETAYYDQY-AVGFSGVLFGMKIVLNAWS-----DDYVFLHGMVIPAKYAAWA 200
Query: 169 SLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
L+ +P SF+GHL GI+ G W
Sbjct: 201 ELLLIQAFIPGTSFIGHLGGILAGLTYLW 229
>gi|374310995|ref|YP_005057425.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
gi|358753005|gb|AEU36395.1| Peptidase S54, rhomboid domain protein [Granulicella mallensis
MP5ACTX8]
Length = 284
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 24/114 (21%)
Query: 8 EIMEKPATSCIIGIC----SVIWFY-----IQKKNIGYSHVGLSYET------------- 45
+++ PAT +IGI ++++ Y + +++I + + S++
Sbjct: 21 SLLDYPATYLLIGINLLVFAIMFRYSPALPLMRQHISWQILTASFDVNTLLRFGGSDAAY 80
Query: 46 AVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ--LGDVGLGTAYYLQYT 97
++G WR+ITS F H+++LHLV NM LW+LG+ + LG GL Y L T
Sbjct: 81 VMNGQWWRLITSTFVHVTILHLVLNMWCLWNLGLFGEPLLGRPGLIAVYLLTGT 134
>gi|242094106|ref|XP_002437543.1| hypothetical protein SORBIDRAFT_10g029120 [Sorghum bicolor]
gi|241915766|gb|EER88910.1| hypothetical protein SORBIDRAFT_10g029120 [Sorghum bicolor]
Length = 344
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIY 112
R S F H+S HL +NM++L G+ QL + +G+ + + VL+ LS + L +
Sbjct: 86 RFFLSPFYHLSESHLFYNMTSLLWKGI--QL-ETSMGSTEFASMSAVLLGLSQGITLLLS 142
Query: 113 HLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLS---LPISFAPFES 169
L+ + AVG+S ++F +L+ D F +L LP +A +
Sbjct: 143 RGLLLLGDDTAYYDQHAVGFSGILFAMKVVLNAWS-----DDFVYLHGMILPSKYAAWAE 197
Query: 170 LIFTSIIVPQASFLGHLSGIIVGYAIAW 197
LI + +P SFLG L GI+ G W
Sbjct: 198 LILIQVFIPGTSFLGQLGGILAGLVYLW 225
>gi|152996186|ref|YP_001341021.1| rhomboid family protein [Marinomonas sp. MWYL1]
gi|150837110|gb|ABR71086.1| Rhomboid family protein [Marinomonas sp. MWYL1]
Length = 290
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 16/154 (10%)
Query: 44 ETAVDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVV 102
E G +WR T A H SVLH+VFN +W + G +E++ LG+ + +++ V
Sbjct: 136 EVFSKGEYWRFFTPALLHFSVLHIVFNTLWIWDIGGKLERI----LGSVVWSVGVVIIAV 191
Query: 103 LSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGW-MTILSVKQP---SSKLDLFGFL 158
LS +L I + L F ++ V Y + F W + ILS + P S +L +F +
Sbjct: 192 LSNVL-----QYQISGYPL--FGGLSGVVYGLIGFAWLLPILSKRWPIIISKQLMVFFVV 244
Query: 159 SLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
L I + PF ++ I A +G LSG+++G
Sbjct: 245 WLGIGYTPFPEMLGLGSIANTAHTIGLLSGLVLG 278
>gi|237806919|ref|YP_002891359.1| rhomboid family protein [Tolumonas auensis DSM 9187]
gi|237499180|gb|ACQ91773.1| Rhomboid family protein [Tolumonas auensis DSM 9187]
Length = 276
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 20/156 (12%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
G WR+ T F H SVLHLVFN++ W LG G Y L +V++SG L+
Sbjct: 131 GQIWRLFTPVFLHFSVLHLVFNLAWWWYLG--------GRTEQRYGVIKLAIVLISGALI 182
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS---KLDLFGFLSLPISFA 165
+ ++ F ++ V Y+ + + W+ + + PS LF F+ + +
Sbjct: 183 PNVLQAMVSG---SLFGGMSGVTYALLGYLWLRERNSEDPSQVTVSNGLFIFMLVWLVLG 239
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
FT+++ + L HL G++VG W H
Sbjct: 240 ------FTNLLGFNTANLAHLGGLLVGLIQGWRDSH 269
>gi|302559651|ref|ZP_07311993.1| rhomboid family protein [Streptomyces griseoflavus Tu4000]
gi|302477269|gb|EFL40362.1| rhomboid family protein [Streptomyces griseoflavus Tu4000]
Length = 295
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 28/184 (15%)
Query: 41 LSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLV 99
L + +G +R+ TS F+H + H+ FNM +LW L G +EQ LG Y L
Sbjct: 122 LPTQGVAEGEWYRLFTSMFTHQEIWHIAFNMLSLWWLGGPLEQ----ALGRVRY----LT 173
Query: 100 LVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLS 159
L ++SGL + +LL ++G S +FG +V D+ ++
Sbjct: 174 LYLISGLAGGALTYLLASGT-------TASLGASGAIFGLFGATAVLMRRLNYDMRPVIA 226
Query: 160 LPISFAPFESLIFT---SIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIV 216
L + +LIFT S I QA G ++G+++GYA ++H AL G
Sbjct: 227 LLVI-----NLIFTFGWSNIAWQAHIGGLVAGVVIGYA----MVHAPRERRALVQYGTCA 277
Query: 217 LVFV 220
LV V
Sbjct: 278 LVLV 281
>gi|357412396|ref|YP_004924132.1| rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
gi|320009765|gb|ADW04615.1| Rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
Length = 300
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 26/174 (14%)
Query: 28 YIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVG 87
Y+ +++ GY V +G +R++TS F H V H+ FNM LW LG +
Sbjct: 120 YVDERSAGYQGV-------AEGQWYRLVTSTFLHQEVWHIAFNMLGLWWLGGPLE---SA 169
Query: 88 LGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQ 147
LG A Y L L +LSGL + +L+ + +G S VFG + +V
Sbjct: 170 LGRARY----LALYLLSGLAGSALTYLIADPAQ-------GTLGASGSVFGLLGATAVLM 218
Query: 148 PSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
D+ ++L + +LIFT ++ H+ G+I G IA ++H
Sbjct: 219 RRMNYDMRPVIALLVV-----NLIFTFNPWGGIAWQAHVEGLIAGALIAVAMVH 267
>gi|449480819|ref|XP_004156004.1| PREDICTED: uncharacterized protein At3g17611-like [Cucumis sativus]
Length = 314
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 24/150 (16%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLS-GLLVLG 110
R + S F H+ HLV+NM S LW +E +G+ + L+++S G+ +L
Sbjct: 64 RFLLSPFYHVGDPHLVYNMISLLWKGTQLE----TSMGSIEFASMVGALLIMSQGITLLL 119
Query: 111 IYHLLI-----QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGF---LSLPI 162
I LLI + + EY +VG+S V+F +L S+ D + + L +P
Sbjct: 120 IKSLLIFFNYGRPYYYEY-----SVGFSGVLFAMKVVLG-----SETDSYTYVHGLRVPS 169
Query: 163 SFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
S A + LI ++ P SFLGHL GI+ G
Sbjct: 170 SHAAWLELILIQMVSPGVSFLGHLGGILAG 199
>gi|449457305|ref|XP_004146389.1| PREDICTED: uncharacterized protein At3g17611-like [Cucumis sativus]
Length = 314
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 24/150 (16%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLS-GLLVLG 110
R + S F H+ HLV+NM S LW +E +G+ + L+++S G+ +L
Sbjct: 64 RFLLSPFYHVGDPHLVYNMISLLWKGTQLE----TSMGSIEFASMVGALLIMSQGITLLL 119
Query: 111 IYHLLI-----QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGF---LSLPI 162
I LLI + + EY +VG+S V+F +L S+ D + + L +P
Sbjct: 120 IKSLLIFFNYGRPYYYEY-----SVGFSGVLFAMKVVLG-----SETDSYTYVHGLRVPS 169
Query: 163 SFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
S A + LI ++ P SFLGHL GI+ G
Sbjct: 170 SHAAWLELILIQMVSPGVSFLGHLGGILAG 199
>gi|308806321|ref|XP_003080472.1| Rhomboid family proteins (ISS) [Ostreococcus tauri]
gi|116058932|emb|CAL54639.1| Rhomboid family proteins (ISS) [Ostreococcus tauri]
Length = 350
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 27/168 (16%)
Query: 51 HW----RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDV--GLGTAYY----LQYTLVL 100
HW R+ TS F+H ++ H++FN A S G G++ +GT ++ + + V
Sbjct: 52 HWTAYYRVYTSIFTHGNLPHVIFNALAFVSTG-----GNLERSVGTFHFAWLFVTFAHVA 106
Query: 101 VVLSGLLVLGIYHLLIQRFKLEYFRRV--TAVGYSCVVFGWMTILSVKQPSSKLDLFGFL 158
S L G+Y F L Y + + AVG S V+F + + + +FG
Sbjct: 107 YFASAALAWGLY------FGLGYTQGILTCAVGMSGVIFALIVCETNYTDVGRRSVFGLF 160
Query: 159 SLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNY 206
+ + P L+ +++P SFLGH G++ G W + G N+
Sbjct: 161 DVASEWYPLALLVLIQLMIPGVSFLGHAGGVVCG----WMYVKGYLNF 204
>gi|89894371|ref|YP_517858.1| hypothetical protein DSY1625 [Desulfitobacterium hafniense Y51]
gi|219668797|ref|YP_002459232.1| rhomboid family protein [Desulfitobacterium hafniense DCB-2]
gi|423073963|ref|ZP_17062698.1| peptidase, S54 family [Desulfitobacterium hafniense DP7]
gi|89333819|dbj|BAE83414.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539057|gb|ACL20796.1| Rhomboid family protein [Desulfitobacterium hafniense DCB-2]
gi|361855174|gb|EHL07168.1| peptidase, S54 family [Desulfitobacterium hafniense DP7]
Length = 327
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVV--EQLGDVGLGTAYYL 94
+ G +WR+ TS F HI LHL FN+ ALW+LG + E LG V T Y L
Sbjct: 189 IQGEYWRLFTSMFLHIGFLHLAFNLYALWALGAIAEELLGRVRYITVYIL 238
>gi|389628520|ref|XP_003711913.1| hypothetical protein MGG_13226 [Magnaporthe oryzae 70-15]
gi|351644245|gb|EHA52106.1| hypothetical protein MGG_13226 [Magnaporthe oryzae 70-15]
Length = 324
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 41 LSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVL 100
LS + +G W +ITSAFSH HL+FNM +L GV L GLG VL
Sbjct: 139 LSRKNIEEGRWWTLITSAFSHKDPFHLLFNMLSL-RFGVEAAL-HTGLGP------LRVL 190
Query: 101 VVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGF--- 157
++ +G + Y L ++ +G S +V G++ +++ +P ++ L
Sbjct: 191 LLATGAALSSSYASLWDGATRKHGADRAGLGASGIVQGFLAAMALTRPWMQVSLMFIPIP 250
Query: 158 LSLPISFAPFESLIFTSI-IVPQASFLGHLSGIIVGYA 194
+SLPI + F + F ++ I Q SG +VGYA
Sbjct: 251 VSLPIVWGLFTAWDFYNLHIARQNGDSPSASGSVVGYA 288
>gi|379733579|ref|YP_005327084.1| putative rhomboid protease [Blastococcus saxobsidens DD2]
gi|378781385|emb|CCG01035.1| Putative rhomboid protease [Blastococcus saxobsidens DD2]
Length = 253
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 73/161 (45%), Gaps = 32/161 (19%)
Query: 42 SYETAVD-GHHWRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGD---VGLGTAYYLQ 95
Y AV+ G WR++T+AF HI +LHL NM AL G + QLG VGL YL
Sbjct: 80 QYPLAVEFGQPWRLLTAAFLHIGLLHLALNMLALLIFGSELERQLGRWRYVGL----YL- 134
Query: 96 YTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLF 155
+ L G IQ F + R V G S ++G + L V + D+
Sbjct: 135 ----VSALGG-------STAIQLFG-DPLRPVA--GASTAIYGLLGALGVLMLVRRQDIR 180
Query: 156 GFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
G L L +F S + P S LGHL G++ G A+A
Sbjct: 181 GILVL------LAINVFISFL-PGVSLLGHLGGLVTGAALA 214
>gi|404212656|ref|YP_006666831.1| putative membrane protein [Gordonia sp. KTR9]
gi|403643455|gb|AFR46695.1| putative membrane protein [Gordonia sp. KTR9]
Length = 237
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 30/175 (17%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQ-YTLVLVVLSGLL 107
G +WR++T+ F H SV+H+ NM +L+ LG +L LG YL Y + L+ S +
Sbjct: 56 GEYWRLLTAGFLHFSVMHVAVNMLSLYILGRDLEL---ALGIGRYLAVYGIALLGGSAAV 112
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
+L E R +TA G S ++G M + V +++ L L I F
Sbjct: 113 ML-----------FEDDRALTA-GASGAIYGLMGAMLVIVLKARVSPVPVL-LIIGFN-- 157
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH--------GMNNYWALSMLGW 214
+ S +P S LGHL G+ G A +++ G N A S LGW
Sbjct: 158 ---VVLSFSLPGISVLGHLGGLFFGAAATAAIVYLPDAVLPAGRRNPRAASRLGW 209
>gi|213512430|ref|NP_001133781.1| Rhomboid domain-containing protein 1 [Salmo salar]
gi|209155312|gb|ACI33888.1| Rhomboid domain-containing protein 1 [Salmo salar]
gi|209734730|gb|ACI68234.1| Rhomboid domain-containing protein 1 [Salmo salar]
Length = 313
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 53 RIITSAFSHISVLHLVFNMSA-LWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
R++ S H+ HL FNM++ LW +E LG+++Y V +L+G++ L +
Sbjct: 68 RLVLSPLHHLDDWHLYFNMASFLWKGVKLEPR----LGSSFYAWLLAVFSLLTGVIYLLL 123
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS--FAPFES 169
+L + + + AVG+S V+F + + P + G +P++ +A +
Sbjct: 124 EMVLSEITQDPSYSMQCAVGFSGVLFALKVLSNHYHPGGVSYVMG---VPVANRYASWVE 180
Query: 170 LIFTSIIVPQASFLGHLSGIIVG 192
L+ + P SF+GHL+GI+VG
Sbjct: 181 LVLIHLTSPGTSFVGHLAGILVG 203
>gi|67968683|dbj|BAE00700.1| unnamed protein product [Macaca fascicularis]
Length = 232
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Query: 98 LVLVVLSGLLVLGIYHLLIQRFKLEY-----FRRVTAVGYSCVVFGWMTILSVKQPSSKL 152
LV+ + ++ G+ +LL+Q E+ F+R AVG+S V+F + + P +
Sbjct: 20 FALVITTFSILTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVLNNHYCPGGFV 79
Query: 153 DLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGM 203
++ GF +P FA + L+ + P SF GHL+GI+VG G + M
Sbjct: 80 NILGF-PVPNRFACWVELVAIHLFSPGTSFAGHLAGILVGLMYTQGPLKKM 129
>gi|24376143|ref|NP_720186.1| intramembrane protease rhomboid family GlpG [Shewanella oneidensis
MR-1]
gi|24351184|gb|AAN57630.1| intramembrane protease rhomboid family GlpG [Shewanella oneidensis
MR-1]
Length = 280
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 35/197 (17%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYS---HVGLSYETAVDG----HHWRIITSAFSHISVL 65
P T I G+C++I+ N+G++ + LSY AV G WR+ T + H S +
Sbjct: 98 PITLIIFGLCTLIY---AAMNLGFASPVYQALSYFGAVPGTGVSQFWRVFTPSLLHFSAM 154
Query: 66 HLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF-KLEYF 124
H++FN+ W LG + +GTA L++L LLV G ++Q + F
Sbjct: 155 HIIFNLLWWWYLGGKI---ETRIGTA-------PLLIL--LLVAGTLPNVVQYYVSGPNF 202
Query: 125 RRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE----SLIFTSIIVPQA 180
++ V Y+ + W ++ +++P + + LP S+ F +L FT +
Sbjct: 203 GGLSGVVYAVAGYTW--VMGLRKPEAG------IGLPPSYMGFMLIWLALGFTDFLGISV 254
Query: 181 SFLGHLSGIIVGYAIAW 197
+ H+ G+++G A W
Sbjct: 255 ANGAHIGGLLIGLAQGW 271
>gi|440470952|gb|ELQ39991.1| phosphatidylinositol phospholipase C [Magnaporthe oryzae Y34]
gi|440488279|gb|ELQ68010.1| phosphatidylinositol phospholipase C [Magnaporthe oryzae P131]
Length = 709
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 41 LSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVL 100
LS + +G W +ITSAFSH HL+FNM +L GV L GLG VL
Sbjct: 139 LSRKNIEEGRWWTLITSAFSHKDPFHLLFNMLSL-RFGVEAAL-HTGLGP------LRVL 190
Query: 101 VVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGF--- 157
++ +G + Y L ++ +G S +V G++ +++ +P ++ L
Sbjct: 191 LLATGAALSSSYASLWDGATRKHGADRAGLGASGIVQGFLAAMALTRPWMQVSLMFIPIP 250
Query: 158 LSLPISFAPFESLIFTSI-IVPQASFLGHLSGIIVGYA 194
+SLPI + F + F ++ + Q SG +VGYA
Sbjct: 251 VSLPIVWGLFTAWDFYNLHMARQNGDSPSASGSVVGYA 288
>gi|377572160|ref|ZP_09801257.1| hypothetical protein GOTRE_152_00160 [Gordonia terrae NBRC 100016]
gi|377530656|dbj|GAB46422.1| hypothetical protein GOTRE_152_00160 [Gordonia terrae NBRC 100016]
Length = 237
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 42/182 (23%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQ-YTLVLVVLSGLL 107
G +WR++T+ F H SV+H+ NM +L+ LG +L LG YL Y + L+ S +
Sbjct: 56 GEYWRLLTAGFLHFSVMHVAVNMLSLYILGRDLEL---ALGIGRYLAVYVIALLGGSAAV 112
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM-----TILSVK-QPSSKLDLFGFLSLP 161
+L E R +TA G S ++G M IL + P L + GF ++
Sbjct: 113 ML-----------FENDRALTA-GASGAIYGLMGAMLVIILKARVSPVPVLLIIGF-NVV 159
Query: 162 ISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH--------GMNNYWALSMLG 213
+SF+ +P S LGHL G++ G A +++ G + S +G
Sbjct: 160 LSFS-----------LPGISVLGHLGGLVFGAAATAAIVYLPDAVLPAGRRDPQTASRVG 208
Query: 214 WI 215
WI
Sbjct: 209 WI 210
>gi|405362758|ref|ZP_11025811.1| rhomboid family protein [Chondromyces apiculatus DSM 436]
gi|397090218|gb|EJJ21092.1| rhomboid family protein [Myxococcus sp. (contaminant ex DSM 436)]
Length = 243
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 28/179 (15%)
Query: 43 YETAVD-GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLV 101
Y AV G +WR++ + H +HL+FNMS + +LG + G+G+ +L +LV
Sbjct: 76 YGPAVQAGQYWRLLGAVLEHGGAIHLLFNMSVVVTLGFTLER---GIGSLRFLGLSLVTA 132
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM-TILSVKQPSSKLDLFGFLSL 160
L F L + V VG S ++ GW +L V + DLF +L
Sbjct: 133 ------------LGASAFSLIFDFDVPTVGASGMILGWAGAMLPVATREGRRDLFIWL-- 178
Query: 161 PISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNY-WALSMLGWIVLV 218
+ + ++P S+ GHL G + G L G Y AL ++ +I LV
Sbjct: 179 --------AQVAVLSLLPFVSWAGHLGGFLFGLPCGLALRMGRQVYARALPIILFITLV 229
>gi|340725934|ref|XP_003401319.1| PREDICTED: rhomboid domain-containing protein 1-like [Bombus
terrestris]
Length = 247
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 55 ITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLS---GLLVLG 110
+ S F H S +HL +NM +L G +E + GT + + ++L +LS + G
Sbjct: 75 LISNFEHGSDMHLYYNMVSLILKGSYLEPM----YGT---INFVILLAILSFGCSTMYAG 127
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESL 170
+ + L+Q + A+G+S ++F I+ ++ D+ GF + A + L
Sbjct: 128 LGYALMQLTGDYGYYTQCAIGFSAILFALKVIVVCEEYDRIQDVGGF-RVSSKIAVWVEL 186
Query: 171 IFTSIIVPQASFLGHLSGIIVG 192
I ++VPQ+SF+GHL GI+VG
Sbjct: 187 ILIHLLVPQSSFIGHLGGILVG 208
>gi|184155757|ref|YP_001844097.1| hypothetical protein LAF_1281 [Lactobacillus fermentum IFO 3956]
gi|260663527|ref|ZP_05864417.1| rhomboid family protein [Lactobacillus fermentum 28-3-CHN]
gi|183227101|dbj|BAG27617.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
gi|260552068|gb|EEX25121.1| rhomboid family protein [Lactobacillus fermentum 28-3-CHN]
Length = 221
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 8 EIMEKPATSCIIGICSVIWFYIQ-----KKNIGYSHVGLSYETAVD-GHHWRIITSAFSH 61
I + P T C++G+C +++ + + ++G +Y V G WR+ T+AF H
Sbjct: 4 AIQQAPLTCCLVGVCVLVYLLEELAGGATNSATLLNLGANYGPFVRAGQWWRVFTAAFLH 63
Query: 62 ISVLHLVFNMSALWSLG-VVEQL 83
I + HL NM L+ LG +E+L
Sbjct: 64 IGLTHLFLNMMVLYYLGRTIEEL 86
>gi|449509605|ref|XP_002194576.2| PREDICTED: rhomboid-related protein 4 [Taeniopygia guttata]
Length = 314
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 11/160 (6%)
Query: 37 SHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYL 94
S LS AV +W R++ + F H HL +NM S LW ++E+ L + ++
Sbjct: 50 SEACLSVNEAVYRKNWQRLLLAPFHHADDWHLYYNMISMLWKGIMLER----KLKSIWFA 105
Query: 95 QYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
V VL G++ + + LL+ + VG+S V+F + + P +
Sbjct: 106 YIIAVFSVLIGIVYMVLELLLVIILDDPSYEMNCGVGFSGVLFALKVLNNHYNPGRVSSV 165
Query: 155 FGFLSLPIS--FAPFESLIFTSIIVPQASFLGHLSGIIVG 192
G LPIS +A + L+ I P SF GHLSGI+VG
Sbjct: 166 LG---LPISSKYACWVELLAIHFISPGTSFAGHLSGILVG 202
>gi|242057069|ref|XP_002457680.1| hypothetical protein SORBIDRAFT_03g011560 [Sorghum bicolor]
gi|241929655|gb|EES02800.1| hypothetical protein SORBIDRAFT_03g011560 [Sorghum bicolor]
Length = 342
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 16/145 (11%)
Query: 57 SAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVL-GIYHLL 115
S + H + +HL NM+ L GV +L + +GTA+ + +L++ G L L G
Sbjct: 70 SPWCHTNEVHLFSNMTTLLWTGV--EL-ETSMGTAWPVTGCAILLLSKGCLSLVGNGAPY 126
Query: 116 IQRFKLEYFRRVTAVGYSCVVFGWMTI-LSVKQPSSK--LDLFGFLSLPISFAPFESLIF 172
F +G+S V+FG + +S S L L G + +P +A + L+
Sbjct: 127 YDEF---------CIGFSGVLFGIKAVSMSAHAAESGDFLHLAGMVVIPAKYAVWAELLL 177
Query: 173 TSIIVPQASFLGHLSGIIVGYAIAW 197
++P SF+GHL GI+ G+ W
Sbjct: 178 VQALMPNTSFVGHLGGILAGHVYLW 202
>gi|227515651|ref|ZP_03945700.1| S54 family peptidase [Lactobacillus fermentum ATCC 14931]
gi|227086081|gb|EEI21393.1| S54 family peptidase [Lactobacillus fermentum ATCC 14931]
Length = 221
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 8 EIMEKPATSCIIGICSVIWFYIQ-----KKNIGYSHVGLSYETAVD-GHHWRIITSAFSH 61
I + P T C++G+C +++ + + ++G +Y V G WR+ T+AF H
Sbjct: 4 AIQQAPLTCCLVGVCVLVYLLEELAGGATNSATLLNLGANYGPFVRAGQWWRVFTAAFLH 63
Query: 62 ISVLHLVFNMSALWSLG-VVEQL 83
I + HL NM L+ LG +E+L
Sbjct: 64 IGLTHLFLNMMVLYYLGRTIEEL 86
>gi|451343563|ref|ZP_21912634.1| hypothetical protein HMPREF9943_00859 [Eggerthia catenaformis OT
569 = DSM 20559]
gi|449337660|gb|EMD16817.1| hypothetical protein HMPREF9943_00859 [Eggerthia catenaformis OT
569 = DSM 20559]
Length = 202
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 21/160 (13%)
Query: 50 HHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
++R+IT+ F H +LHL NMSA+++LG+ VE++ Q +++V LL
Sbjct: 59 QYYRLITANFIHFGILHLAVNMSAIYNLGIFVERI----------FQKKMIIVAFVSLLS 108
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSK---LDLFGFLSLPISFA 165
L+ + + + + G S ++FG + L+ K D+F L LP A
Sbjct: 109 TNFLPYLLYLYN-GFGKLTVSGGISGLIFGLIGALAALALLKKNIFSDIFKSL-LPNLIA 166
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNN 205
+I SIIVP S GH+ G I G+ ++ LI +NN
Sbjct: 167 ----MILISIIVPNISLSGHICGFIGGFFSSYLLIK-INN 201
>gi|333999825|ref|YP_004532437.1| rhomboid family protein [Treponema primitia ZAS-2]
gi|333738842|gb|AEF84332.1| rhomboid family protein [Treponema primitia ZAS-2]
Length = 209
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 15/153 (9%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGL 106
+G +W+ +T F+H S+ H++FNM AL+ G VE+ +G+ +L Y LV VL+G+
Sbjct: 49 NGFYWQFLTYMFAHGSITHILFNMLALFFFGAQVER----RMGSKEFLLYYLVTGVLAGV 104
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSL--PISF 164
L IY F Y V +G S +F + P S + L+G L L P+
Sbjct: 105 LSFCIYW-----FTGAY--MVQLMGASGALFAVQLAYATFFPDSMVYLWGILPLRAPVMV 157
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
F +L S + S + HL+ + G+A W
Sbjct: 158 LGFTALELFSSVFGFRSGVAHLTH-LAGFAFGW 189
>gi|332024419|gb|EGI64617.1| Rhomboid domain-containing protein 1 [Acromyrmex echinatior]
Length = 246
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 31/198 (15%)
Query: 10 MEKPATSCIIGICSVIWFYIQKKNIGYS--HVGLSYETAVDGHHWR-IITSAFSHISVLH 66
++K + +IGI + Y+ + ++ V +S + +WR S F H S +H
Sbjct: 26 LDKIPPATLIGIIAQTLLYMGLIRVSWNAEDVCISAIKIIKYKNWRSFFLSNFEHGSDMH 85
Query: 67 LVFNMSAL-----------WSLGVVEQLGDVGLG-TAYYLQYTLVLVVLSGLLVLGIYHL 114
L +NM + ++ V LG + +G +A Y+ +L+ L+G
Sbjct: 86 LYYNMLSFILKGSYLEPIYGTMNFVLLLGVLSIGCSAMYVFLGYILMQLTG--------- 136
Query: 115 LIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTS 174
YF A+G+S +F + ++++ + KL L +P A + LI
Sbjct: 137 -----DYGYFT-ACAIGFSATLFA-LKVIALCEERDKLQNINGLIVPSKIAVWLELILIH 189
Query: 175 IIVPQASFLGHLSGIIVG 192
++VP +SF+GHL GI+VG
Sbjct: 190 LLVPNSSFIGHLGGILVG 207
>gi|408673735|ref|YP_006873483.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
gi|387855359|gb|AFK03456.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
Length = 307
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 9/157 (5%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
W I+T F+H LHL+FNM + G + Q +G+ L L+ +LSGL + I
Sbjct: 70 WTIVTYCFTHYGFLHLLFNMLTFFWFGTLVQ---EFIGSRKLLNIYLIGGILSGLFYITI 126
Query: 112 YHLLI---QRFKLEYFR-RVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
Y+L+ Q L T +G S V+ M P + LFG + + I + +
Sbjct: 127 YNLIALANQSGSLNLNNITPTILGASAAVYAVMFAAVALLPEYEFYLFGIVLIKIRYVAW 186
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMN 204
LI S I+P +S + HL G I GY + L G++
Sbjct: 187 FFLIL-SFIMP-SSGISHLGGAISGYFYIYFLRRGVD 221
>gi|338535843|ref|YP_004669177.1| rhomboid family protein [Myxococcus fulvus HW-1]
gi|337261939|gb|AEI68099.1| rhomboid family protein [Myxococcus fulvus HW-1]
Length = 212
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 26/159 (16%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
G +WR++ + H S LHL+FNMS + +LG + G+G+ + +LV
Sbjct: 52 GQYWRLLGAVLEHGSPLHLLFNMSVVVTLGFTA---ERGIGSLRFFGLSLVTA------- 101
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM-TILSVKQPSSKLDLFGFLSLPISFAPF 167
L F L + V VG S ++ GW +L V + DLF +L
Sbjct: 102 -----LGASTFSLIFDFDVPTVGASGMILGWAGAMLPVATREGRRDLFIWL--------- 147
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNY 206
+ + ++P S+ GHL G + G L G Y
Sbjct: 148 -AQVAVLSLLPFVSWAGHLGGFLFGLPCGLALRMGRQVY 185
>gi|455648311|gb|EMF27191.1| hypothetical protein H114_20747 [Streptomyces gancidicus BKS 13-15]
Length = 295
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 28/177 (15%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSG 105
DG +R++TS F+H + H+ FNM +LW L G +EQ LG A Y L L ++SG
Sbjct: 128 ADGEWYRLVTSMFTHEEIWHIGFNMLSLWLLGGPLEQH----LGRARY----LALYLISG 179
Query: 106 LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165
L + +LL ++G S VFG +V + D+ ++L +
Sbjct: 180 LAGSALTYLLAGGG-------TASLGASGAVFGLFGATAVLMRRLRYDMRPIVALLVI-- 230
Query: 166 PFESLIFT---SIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVF 219
+L+ T S I QA G ++G+++GYA ++H AL G LV
Sbjct: 231 ---NLVITFGWSGIAWQAHIGGLVAGVVIGYA----MVHAPRERRALVQYGTCALVL 280
>gi|392393767|ref|YP_006430369.1| hypothetical protein Desde_2230 [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390524845|gb|AFM00576.1| putative membrane protein [Desulfitobacterium dehalogenans ATCC
51507]
Length = 275
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVV--EQLGDVGLGTAYYL 94
+ G +WR+ TS F HI LHL FN+ ALW+LG + E LG + T Y L
Sbjct: 137 IQGEYWRLFTSMFLHIGFLHLAFNLYALWALGPIAEELLGRIRYITVYIL 186
>gi|358371343|dbj|GAA87951.1| rhomboid protein 2 [Aspergillus kawachii IFO 4308]
Length = 911
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 81/183 (44%), Gaps = 25/183 (13%)
Query: 23 SVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ 82
IW +Q ++ VG G +R+ T F H+ H N+ AL L +E+
Sbjct: 44 QTIWSVVQWGSVIPEEVGF-------GTMYRLNTYPFIHLGFFHAFLNILALTPL--LER 94
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVL--GIYHLLIQRFKLEYFRRVTAVGYSCVVF--- 137
A + T V + + L L GIY +LI++F L R VG S VF
Sbjct: 95 F------EAEHGTLTAVALFIGPLSTLPAGIY-ILIEKFVLH--RNTAVVGSSIWVFLLL 145
Query: 138 GWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
G I + K S+ G +P +P + SI+VP SFLGHL I+VGY +
Sbjct: 146 GSEAIRTFK--SNPYFSLGSTKIPTWTSPLFACALVSILVPNTSFLGHLCAILVGYLLGL 203
Query: 198 GLI 200
G++
Sbjct: 204 GVL 206
>gi|294656613|ref|XP_458911.2| DEHA2D10252p [Debaryomyces hansenii CBS767]
gi|218511831|sp|Q6BSA9.2|RBD2_DEBHA RecName: Full=Rhomboid protein 2
gi|199431606|emb|CAG87065.2| DEHA2D10252p [Debaryomyces hansenii CBS767]
Length = 286
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 19/148 (12%)
Query: 61 HISVLHLVFNMSALWS-LGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
H H + N+ L+S L + E+ GT + VL V +GL + LL
Sbjct: 72 HRGFTHWLLNVVGLFSPLAIFERTN----GTVFTGVTLNVLAVTAGLQFCIVGKLL---- 123
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGF------LSLPISFAPFESLIFT 173
+ +G S VVF +M+ ++ K+ + ++ F +S+P ++PF LI
Sbjct: 124 ----YPNTQVIGLSGVVFSFMSFMAYKEHHTTPVIYTFKYQGSEVSIPTLYSPFIFLIVC 179
Query: 174 SIIVPQASFLGHLSGIIVGYAIAWGLIH 201
+++P +SF GHL+GI GY +A G I
Sbjct: 180 MVLIPGSSFWGHLAGISSGYLLALGYIK 207
>gi|444429847|ref|ZP_21225028.1| rhomboid family protein [Gordonia soli NBRC 108243]
gi|443889267|dbj|GAC66749.1| rhomboid family protein [Gordonia soli NBRC 108243]
Length = 268
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 31/192 (16%)
Query: 43 YETAV-DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQ-YTLVL 100
Y+ A+ DG +WR+ TS F H+SV+H+ NM AL+ LG +L LG Y+ Y L
Sbjct: 79 YKPAIADGQYWRLFTSGFLHLSVIHIAGNMLALYILGRDLEL---ALGIPRYVAVYVTSL 135
Query: 101 VVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSL 160
S ++L E VTA G S ++G M + V ++L LS+
Sbjct: 136 FGGSAFVML-----------FESDTAVTA-GASGAIYGLMGAILVVLLKARLSPVPVLSI 183
Query: 161 PISFAPFESLIFTSIIVPQASFLGHLSGII------VGYAIAWGLIHGMNNYWA--LSML 212
I SI +P S H+ G++ G A GL+ G + A S++
Sbjct: 184 ------IGLNIVLSIAIPGISIWAHIGGLVFGAVATAGIVFAPGLLGGSSRPSAKTASII 237
Query: 213 GWIVLVFVYSLK 224
GW+ + ++ L
Sbjct: 238 GWVTIAVLFVLA 249
>gi|239989111|ref|ZP_04709775.1| hypothetical protein SrosN1_17547 [Streptomyces roseosporus NRRL
11379]
gi|291446112|ref|ZP_06585502.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291349059|gb|EFE75963.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 300
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 20/182 (10%)
Query: 42 SYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLV 101
S E +G +R++TS F H ++H+ FNM LW LG QL + LG + Y L L
Sbjct: 128 SIEGVAEGQWYRLVTSMFLHQELMHIGFNMLGLWWLG--GQL-EAALGRSRY----LALY 180
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
+LSG + +L+ + + ++G S V+G +V D+ P
Sbjct: 181 LLSGFAGSALTYLIAAQNQ-------PSLGASGAVYGLFGATAVLMRRMNYDMR-----P 228
Query: 162 ISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVY 221
+ +L+FT ++ H+ G+I G AIA G++H G LV +
Sbjct: 229 VLVLLALNLVFT-FTWGGIAWEAHVGGLIAGVAIAVGMVHAPRERRTAVQTGTCALVLLA 287
Query: 222 SL 223
SL
Sbjct: 288 SL 289
>gi|2209272|gb|AAC45436.1| OrfD [Bacillus firmus]
Length = 162
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 12 KPATSCIIGICSVIWFYIQKKNIGYSHV------GLSYETAV-DGHHWRIITSAFSHISV 64
KP + ++ I + FYI ++N G +HV G Y A+ +G WR +S F HI
Sbjct: 69 KPIATYVLLIMIAVMFYIVEQNGGSTHVLTLIEFGAKYNPAILEGEWWRFFSSMFLHIGF 128
Query: 65 LHLVFNMSALWSLG 78
+HL N AL+ LG
Sbjct: 129 IHLFMNSPALFYLG 142
>gi|357019099|ref|ZP_09081357.1| rhomboid family protein [Mycobacterium thermoresistibile ATCC
19527]
gi|356481160|gb|EHI14270.1| rhomboid family protein [Mycobacterium thermoresistibile ATCC
19527]
Length = 281
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 81/173 (46%), Gaps = 27/173 (15%)
Query: 23 SVIWFYIQKKNIGYSHVGLSYETAVD-GHHWRIITSAFSHISVLHLVFNMSALWSLG--V 79
+V+ + +Q+ + G++ + + AV G ++R++TSAF H ++HL+FNM AL+ +G +
Sbjct: 84 NVLMYVLQRASTGFTEAFVLWAPAVAAGEYYRLVTSAFLHFGLMHLLFNMFALYVIGGPL 143
Query: 80 VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGW 139
LG + G Y L L G ++ +Y L + G S VFG
Sbjct: 144 EAALGRLRFGLLYALS------ALGGSVL--VYLLAMN----------PTAGASGAVFGL 185
Query: 140 MTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
V LD+ L + +L+ T +VP S+ GHL G++ G
Sbjct: 186 FAATYVVAKRLNLDVRFVTGLIVV-----NLVIT-FVVPGISWQGHLGGLLTG 232
>gi|410867339|ref|YP_006981950.1| Peptidase, S54 family protein [Propionibacterium acidipropionici
ATCC 4875]
gi|410823980|gb|AFV90595.1| Peptidase, S54 family protein [Propionibacterium acidipropionici
ATCC 4875]
Length = 229
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 82/191 (42%), Gaps = 31/191 (16%)
Query: 15 TSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSH-ISVLHLVFNMSA 73
T +IG+C +IW + + LS A WR +TSAF+H ++ H+ FNM A
Sbjct: 13 TWTLIGVCVLIWLGELAIPGFINTIALS-AAAGKTEPWRFLTSAFAHSTNITHIGFNMFA 71
Query: 74 LWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVT---- 128
LWSLG V+E+ LG +L L+ + G L ++ EY V
Sbjct: 72 LWSLGRVLERF----LGRGRFLATYLLSALAGGAL------FVVMAAGTEYGSAVIPGWY 121
Query: 129 --AVGYSCVVFGWMTILSVKQP---SSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
VG S +FG L V Q S L+ L L ++ F +P ++
Sbjct: 122 DGVVGASGAIFGLFGTLLVVQRRLGGSTRSLWMVLILNVALVFF---------IPDIAWQ 172
Query: 184 GHLSGIIVGYA 194
H+ G IVG A
Sbjct: 173 AHVGGFIVGAA 183
>gi|357413987|ref|YP_004925723.1| rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
gi|320011356|gb|ADW06206.1| Rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
Length = 304
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 21/110 (19%)
Query: 35 GYSHVGLSYETAVDGHHWRIITSAFSHI------SVLHLVFNMSALWSLGVVEQLGDVGL 88
G ++ GL DG +R++T AF H+ V+HLVFNM ALW+LG ++ + L
Sbjct: 115 GETYPGLELTGVADGEWYRLLTGAFLHLPPDASFGVMHLVFNMFALWNLG---RMVEDQL 171
Query: 89 GTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFG 138
G A YL L+ V +LV + TAVG S +FG
Sbjct: 172 GRARYLALYLLSAVGGSVLVYLVSP------------ETTAVGASGAIFG 209
>gi|350630141|gb|EHA18514.1| hypothetical protein ASPNIDRAFT_52561 [Aspergillus niger ATCC 1015]
Length = 899
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 23 SVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ 82
IW +Q ++ VG G +R+ T F H+ H N+ AL L +E+
Sbjct: 44 QTIWSVVQWGSVIPEEVGF-------GTMYRLNTYPFIHLGFFHAFLNILALTPL--LER 94
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVL--GIYHLLIQRFKLEYFRRVTAVGYSCVVF--- 137
A + T V + + L L GIY +LI++F L R VG S VF
Sbjct: 95 F------EAEHGTLTAVALFIGPLSTLPAGIY-ILIEKFVLH--RNTAVVGSSIWVFLLL 145
Query: 138 GWMTILSVK-QPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
G I + K P L G +P +P + SI+VP SFLGHL I+VGY +
Sbjct: 146 GSEAIRTFKSNPYFSFSL-GSTKIPTWTSPLFACALVSILVPNTSFLGHLCAILVGYLLG 204
Query: 197 WGLI 200
G++
Sbjct: 205 LGVL 208
>gi|326779930|ref|ZP_08239195.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
gi|326660263|gb|EGE45109.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
Length = 303
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 105/240 (43%), Gaps = 54/240 (22%)
Query: 3 RPLFYEIMEKPAT--SCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
RP EI+++ A + + G ++Y GY G++ DG +R++T AF
Sbjct: 89 RP---EIVDRFAVLGAALTGPDGEQYYYRGDTYPGYDLTGIA-----DGEWYRLVTGAFL 140
Query: 61 HI------SVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYH 113
H+ V+HLVFNM ALW++G VE LG A YL L+ V +LV +
Sbjct: 141 HLPPDASFGVMHLVFNMFALWNIGRAVEGQ----LGRARYLALYLLSAVGGSVLV----Y 192
Query: 114 LLIQRFKLEYFRRVTAVGYSCVVFG-----WMTILSVKQPSSKLDLF--GFLSLPISFAP 166
LL + VG S VFG W+ + + ++ F GFL +
Sbjct: 193 LLAP--------DTSTVGASGAVFGLAAAYWVIHRRLGHDMAAVNRFMAGFLVWMVL--- 241
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNY--WALSMLGWIVLVFVYSLK 224
S +FT S+ GHL G++ G + +GL W + G +VL ++++
Sbjct: 242 --SALFT-------SWQGHLGGLLTGALVTYGLAFAPAKLRVWPAQLAGGLVLAGLFAVA 292
>gi|431793836|ref|YP_007220741.1| hypothetical protein Desdi_1896 [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784062|gb|AGA69345.1| putative membrane protein [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 321
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQL 83
+ G +WR+ TS F HI V+HL FN+ ALW+LG ++E+L
Sbjct: 183 LQGEYWRLFTSMFLHIGVIHLAFNLYALWALGPILEEL 220
>gi|317030716|ref|XP_001393177.2| rhomboid protein 2 [Aspergillus niger CBS 513.88]
Length = 270
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 23 SVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ 82
IW +Q ++ VG G +R+ T F H+ H N+ AL L +E+
Sbjct: 44 QTIWSVVQWGSVIPEEVGF-------GTMYRLNTYPFIHLGFFHAFLNILALTPL--LER 94
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVL--GIYHLLIQRFKLEYFRRVTAVGYSCVVF--- 137
A + T V + + L L GIY +LI++F L R VG S VF
Sbjct: 95 F------EAEHGTLTAVALFIGPLSTLPAGIY-ILIEKFVLH--RNTAVVGSSIWVFLLL 145
Query: 138 GWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
G I + K S+ G +P +P + SI+VP SFLGHL I+VGY +
Sbjct: 146 GSEAIRTFK--SNPYFSLGSTKIPTWTSPLFACALVSILVPNTSFLGHLCAILVGYLLGL 203
Query: 198 GLIH 201
G++
Sbjct: 204 GVLK 207
>gi|224541443|ref|ZP_03681982.1| hypothetical protein CATMIT_00605 [Catenibacterium mitsuokai DSM
15897]
gi|224525635|gb|EEF94740.1| peptidase, S54 family [Catenibacterium mitsuokai DSM 15897]
Length = 183
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 19 IGICSVIWFYIQ-----KKNIGYSHVGLSYETAVD--GHHWRIITSAFSHISVLHLVFNM 71
+ IC ++ YI K H+G Y V G +WR ITSAF H LHL NM
Sbjct: 1 MAICIAVFVYINYFSKDNKTSEAMHLGALYTPYVKNRGEYWRFITSAFIHTEFLHLFMNM 60
Query: 72 SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
++ LG +L + LG YL LV +V+S L
Sbjct: 61 YCIFYLG---RLFETILGPVRYLILVLVSIVMSSL 92
>gi|441142545|ref|ZP_20962413.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440622490|gb|ELQ85269.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 303
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 20/174 (11%)
Query: 36 YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQ 95
++ L + +G +R++T+ F H + +H++FNM +LW LG L A+
Sbjct: 124 FTREDLQFIGVAEGEWYRLLTAVFLHQAPMHIIFNMLSLWWLGPP-------LEAAFGRV 176
Query: 96 YTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLF 155
L L +LSGL + +LL + + ++G S +FG + + D+
Sbjct: 177 RFLALYLLSGLGGSALSYLLAAQNQ-------PSLGASGAIFGLLGATVILMRRLNYDM- 228
Query: 156 GFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWAL 209
P+ +L+FT P ++ H+ G+++G A+ +G++H AL
Sbjct: 229 ----RPVLILLALNLVFT-FAWPDIAWQAHVGGLVMGAAVTYGMVHAPRARRAL 277
>gi|408672893|ref|YP_006872641.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
gi|387854517|gb|AFK02614.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
Length = 234
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 18/126 (14%)
Query: 43 YETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG------VVEQLGDVGLGTAYYLQY 96
Y + R ITS F H +HL FNM L+S G +++ D +G+ Y+ +
Sbjct: 59 YAVERRKEYHRFITSGFVHADYMHLFFNMYTLYSFGEFMEQVFIQRFDDPKIGSVAYVLF 118
Query: 97 TLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVG-YSCVVFGWMTILSVKQPSSKLDLF 155
++ +V+S L ++ K +R + A G S V+FG TIL + P+++L +F
Sbjct: 119 YVIAIVVSDLPT------FVKHRKDSGYRSLGASGAVSAVIFG--TILFI--PTAQLAIF 168
Query: 156 GFLSLP 161
F+ +P
Sbjct: 169 -FIPMP 173
>gi|350427238|ref|XP_003494696.1| PREDICTED: valyl-tRNA synthetase-like [Bombus impatiens]
Length = 1223
Score = 45.8 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 18/157 (11%)
Query: 37 SHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQY 96
+++G + V G WR IT F H S+LHL+FN+S W LG G Q
Sbjct: 1072 AYLGFPVNSHVYGDIWRWITPIFLHFSLLHLIFNLSWWWYLG----------GMIERQQK 1121
Query: 97 TLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL-F 155
TL L+ ++ + L I + YF ++ V Y+ + + W + +P+ + L
Sbjct: 1122 TLKLLEITIIAAL-ISNASEALLSNPYFGGLSGVVYALIGYTWF--MGKFKPAKGIYLDN 1178
Query: 156 GFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
G +S+ I + + FT P A+ + H+ G++VG
Sbjct: 1179 GIISMAIIWL---FIGFTGYFGPIAN-VAHIIGLLVG 1211
>gi|108760756|ref|YP_632796.1| rhomboid family protein [Myxococcus xanthus DK 1622]
gi|108464636|gb|ABF89821.1| rhomboid family protein [Myxococcus xanthus DK 1622]
Length = 217
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 26/159 (16%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
G +WR++ + H S LHL+FNMS + +LG + G+G+ + +LV
Sbjct: 57 GQYWRLLGAVLEHGSPLHLLFNMSVVVTLGFTL---ERGIGSLRFFGLSLVTA------- 106
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM-TILSVKQPSSKLDLFGFLSLPISFAPF 167
L F L + V VG S ++ GW +L V + DLF +L
Sbjct: 107 -----LGASTFSLIFDFDVPTVGASGMILGWAGAMLPVATREGRRDLFIWL--------- 152
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNY 206
+ + ++P S+ GHL G + G L G Y
Sbjct: 153 -AQVAVLSLLPFVSWAGHLGGFLFGLPCGLALRMGRQVY 190
>gi|120406695|ref|YP_956524.1| rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
gi|119959513|gb|ABM16518.1| Rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
Length = 290
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 3 RPLFYEIMEKPATS-------CIIGICSVIWFYIQKKNIGYSH-VGLSYETAVDGHHWRI 54
RP+ + +PA S +IG+ +++ F +Q + +GL A DG +R+
Sbjct: 62 RPVTNAVGARPARSTTPVVTYALIGL-NLLMFALQMASPDLDRALGLWPPAAADGELYRL 120
Query: 55 ITSAFSHISVLHLVFNMSALWSLGV 79
+TSAF H SV H+ FNM AL+ +G
Sbjct: 121 LTSAFLHFSVTHIAFNMLALYFVGA 145
>gi|182439278|ref|YP_001826997.1| hypothetical protein SGR_5485 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178467794|dbj|BAG22314.1| putative membrane protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 303
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 105/240 (43%), Gaps = 54/240 (22%)
Query: 3 RPLFYEIMEKPAT--SCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
RP EI+++ A + + G ++Y GY G++ DG +R++T AF
Sbjct: 89 RP---EIVDRFAVLGAALTGPDGEQYYYRGDTYPGYDLTGIA-----DGEWYRLVTGAFL 140
Query: 61 HI------SVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYH 113
H+ V+HLVFNM ALW++G VE LG A YL L+ V +LV +
Sbjct: 141 HLPPDASFGVMHLVFNMFALWNIGRAVEGQ----LGRARYLALYLLSAVGGSVLV----Y 192
Query: 114 LLIQRFKLEYFRRVTAVGYSCVVFG-----WMTILSVKQPSSKLDLF--GFLSLPISFAP 166
LL + VG S VFG W+ + + ++ F GFL +
Sbjct: 193 LLAP--------DTSTVGASGAVFGLAAAYWVIHRRLGHDMAAVNRFMAGFLVWMVL--- 241
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNY--WALSMLGWIVLVFVYSLK 224
S +FT S+ GHL G++ G + +GL W + G +VL ++++
Sbjct: 242 --SALFT-------SWQGHLGGLLTGALVTYGLAFAPAKLRVWPAQLAGGLVLAGLFAVA 292
>gi|387132659|ref|YP_006298631.1| peptidase, S54 family [Prevotella intermedia 17]
gi|386375507|gb|AFJ09253.1| peptidase, S54 family [Prevotella intermedia 17]
Length = 318
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 33/181 (18%)
Query: 39 VGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTL 98
+GL + + D H W+++T F H +H++ NM LW G+V + +V G+ +L Y +
Sbjct: 36 LGLHFFLSNDFHLWQLVTYMFMHGGYMHILMNMFMLWMFGMV--MENV-WGSKKFLLYYM 92
Query: 99 VLVVLSGL----------LVLGIYHLL-----IQRFKLE-YFRRVTAVGYSCVVFGWMTI 142
V + +GL + G+ H + R +E Y R T VG S V+G +
Sbjct: 93 VTGIGAGLCQELAQYATYMAEGLNHYQYVVTEMGRMPMENYLSRWTTVGASGAVYGVLLA 152
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLG----------HLSGIIVG 192
+ P+ ++ + + +PI + +IF SI + S +G HL G++ G
Sbjct: 153 FGLTFPNERMFI---IPIPIPLKA-KWIIFGSIAIELFSAMGTSNDGVAHLAHLGGMLFG 208
Query: 193 Y 193
Y
Sbjct: 209 Y 209
>gi|311105467|ref|YP_003978320.1| rhomboid family protein [Achromobacter xylosoxidans A8]
gi|310760156|gb|ADP15605.1| rhomboid family protein [Achromobacter xylosoxidans A8]
Length = 425
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVV 80
+ G +WR+ TS F H+ LHL NM ALWSLGV+
Sbjct: 62 LSGEYWRLFTSMFLHVGFLHLAINMLALWSLGVI 95
>gi|442322030|ref|YP_007362051.1| rhomboid family protein [Myxococcus stipitatus DSM 14675]
gi|441489672|gb|AGC46367.1| rhomboid family protein [Myxococcus stipitatus DSM 14675]
Length = 241
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 35/174 (20%)
Query: 39 VGLSYETAVD-GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYT 97
+G Y AV G +WR++ +AF H +LHL FNMS + +LG + G+G+ + +
Sbjct: 70 LGALYGPAVQAGQYWRLVAAAFEHGGILHLAFNMSVVVTLGFTL---ERGIGSLRFAGLS 126
Query: 98 LVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGW---MTILSVKQPSSKLDL 154
LV L F L + T VG S ++ GW M ++ +Q +L
Sbjct: 127 LVTA------------LGASAFSLLFDFDKTMVGASGMILGWAGAMLPIATRQGRRELGT 174
Query: 155 FGFLSLPISFAPFESLIFTSI--IVPQASFLGHLSGIIVGYAIAWGLIHGMNNY 206
+ L+ ++ ++P S+ GHL G + G + G Y
Sbjct: 175 W--------------LVQVAVLSLLPMVSWSGHLGGFLFGLPCGIAMRQGRRVY 214
>gi|343507028|ref|ZP_08744478.1| protein GlpG [Vibrio ichthyoenteri ATCC 700023]
gi|342800662|gb|EGU36175.1| protein GlpG [Vibrio ichthyoenteri ATCC 700023]
Length = 274
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 38/195 (19%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRI---ITSAFSHISVLHLVF 69
P T I+ ICSVI F +Q+ G S + A G W+I ++ A H S++H+ F
Sbjct: 98 PFTLAIMAICSVI-FILQQFGAGQSVFNALHFPAFAGQEWQIWRWVSHALLHFSIMHIAF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLE--YFR 125
N+ W LG GD+ LG+ +Q + LSG I +F +E F
Sbjct: 157 NLLWWWQLG-----GDIEQRLGSGKLIQLFVFSAALSG----------IGQFWVEGANFG 201
Query: 126 RVTAVGYSCVVFGWMTILSVKQPSSKL----DLFGFL--SLPISF-APFESLIFTSIIVP 178
++ V Y+ V + W ++ + P L L GF+ L + F PF ++ T+ +V
Sbjct: 202 GLSGVVYALVGYIW--LMGYRAPEKGLMMPKPLIGFMLVWLVLGFVQPFMAIANTAHLV- 258
Query: 179 QASFLGHLSGIIVGY 193
G L+G+++G+
Sbjct: 259 -----GLLAGVMLGW 268
>gi|449278548|gb|EMC86359.1| Rhomboid domain-containing protein 1 [Columba livia]
Length = 220
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
R++ S H HL +NM S LW ++E+ L + ++ V VL G++ + +
Sbjct: 67 RLLLSPVHHADDWHLYYNMVSMLWKGIMLEK----KLKSVWFAYIIAVFSVLIGVVYMML 122
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS--FAPFES 169
+L++ + AVG+S V+F + + P + G LPI+ +A +
Sbjct: 123 EFMLVEILDDPSYEMNCAVGFSGVLFALKVLNNHYNPGRVSSVLG---LPIASKYACWVE 179
Query: 170 LIFTSIIVPQASFLGHLSGIIVG 192
L+ I P SF GHL+GI+VG
Sbjct: 180 LVAIHFISPGTSFAGHLAGILVG 202
>gi|42572467|ref|NP_974329.1| rhomboid-like protein 14 [Arabidopsis thaliana]
gi|332642457|gb|AEE75978.1| rhomboid-like protein 14 [Arabidopsis thaliana]
Length = 239
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 129 AVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSG 188
AVG+S V+F +L+ Q ++G L +P +A + LI + VP ASFLGHL G
Sbjct: 57 AVGFSGVLFAMKVVLN-SQAEDYSSVYGIL-VPTKYAAWAELILVQMFVPNASFLGHLGG 114
Query: 189 IIVG 192
I+ G
Sbjct: 115 ILAG 118
>gi|294813767|ref|ZP_06772410.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|326442188|ref|ZP_08216922.1| hypothetical protein SclaA2_14039 [Streptomyces clavuligerus ATCC
27064]
gi|294326366|gb|EFG08009.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 301
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 20/158 (12%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
+R++T+ F H + H++FN+ LW LG ++ + LG + L L +LSGL +
Sbjct: 139 YRLLTAVFLHQELSHILFNLLGLWFLG---RMVEPALGRRRF----LALYLLSGLGGSTL 191
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
+L+ + + ++G S +FG M V +LD+ P+ SL+
Sbjct: 192 AYLVAEPNQ-------PSLGASGAIFGLMGAFVVLARRVQLDMR-----PVVLILGVSLV 239
Query: 172 FTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWAL 209
T P S+ GH+ G++ G IA G+++ AL
Sbjct: 240 LT-FTRPDISWEGHIGGLVTGAVIAAGMVYAPRERRAL 276
>gi|296268056|ref|YP_003650688.1| rhomboid family protein [Thermobispora bispora DSM 43833]
gi|296090843|gb|ADG86795.1| Rhomboid family protein [Thermobispora bispora DSM 43833]
Length = 286
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 28/166 (16%)
Query: 48 DGHHWRIITSAFSHI---SVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVL 103
G WR+ITSAF H S H++FNM AL+ +G +E+L LG+A + L L L
Sbjct: 116 QGEWWRLITSAFLHAPPPSFWHILFNMWALYVIGPDLERL----LGSARFAALYL-LSAL 170
Query: 104 SGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
G + + Y V A+G S ++G L V D+ G L L
Sbjct: 171 GGSVAI-------------YLFGVAALGASGAIYGLFGALFVVARRLGTDVRGVLWL--- 214
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWAL 209
+ + +VP S+ GHL G++ G +A GL++ + L
Sbjct: 215 ---IGINVLITFVVPGISWQGHLGGLVTGTVVAAGLVYAPERHRTL 257
>gi|47221041|emb|CAG12735.1| unnamed protein product [Tetraodon nigroviridis]
Length = 343
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 28/164 (17%)
Query: 53 RIITSAFSHISVLHLVFNMSA-LWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
R++ S H HL FNM++ LW +E+ LG A++L V VL+G++ L +
Sbjct: 67 RLLLSPLHHADDFHLYFNMASFLWKGIRLERR----LGGAWFLYLLSVFSVLTGVVYLVL 122
Query: 112 YHLLIQRFKLEYFRRVTAVGYS-------CVVF-GWMTIL----------SVKQPSSKLD 153
LL + + + + AVG+S C V+ G++ I ++K S+
Sbjct: 123 ETLLAELTQDQSYSMQCAVGFSGILRNLNCNVYNGYLYIFLFFLFRGVLFALKVLSNHYH 182
Query: 154 LFGF---LSLPIS--FAPFESLIFTSIIVPQASFLGHLSGIIVG 192
G + LP+S +A + L+ I P S +GHLSGI+VG
Sbjct: 183 PGGVTYVMGLPVSNRYASWVELVLIHITAPGTSLIGHLSGIVVG 226
>gi|396483794|ref|XP_003841791.1| similar to Integral membrane protease of the rhomboid family
involved in different forms of regulated intramembrane
proteolysis (ISS) [Leptosphaeria maculans JN3]
gi|312218366|emb|CBX98312.1| similar to Integral membrane protease of the rhomboid family
involved in different forms of regulated intramembrane
proteolysis (ISS) [Leptosphaeria maculans JN3]
Length = 264
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 11/129 (8%)
Query: 38 HVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYT 97
++ L+ + GH W + TS F+HI + H+ N+ ++ LG + T Y+
Sbjct: 96 NMSLNLDDVRQGHWWLLFTSTFTHIDLSHIFSNLFTVFFLGRFLARHPIITPTRYF---- 151
Query: 98 LVLVVLSGLLVLGIYHLLIQRFKLEY----FRRVTAVGYSCVVFGWMTILSVKQPSSKLD 153
V+ + SGL G + L R+ E + V +G+S VV G ++ + PS+K+
Sbjct: 152 -VIAMGSGL--SGSFGWLANRYAQERNPLSRKYVRGLGFSGVVMGISSVAACLMPSAKVH 208
Query: 154 LFGFLSLPI 162
L+G + +P+
Sbjct: 209 LYGIIPVPM 217
>gi|149191752|ref|ZP_01869991.1| GlpG protein [Vibrio shilonii AK1]
gi|148834394|gb|EDL51392.1| GlpG protein [Vibrio shilonii AK1]
Length = 277
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 28/188 (14%)
Query: 14 ATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRI---ITSAFSHISVLHLVFN 70
AT I+ ICSVI F +Q+ G + + A+DG W+I T A H S LH++FN
Sbjct: 99 ATLSIMLICSVI-FILQQLGWGEAIFASLHFPALDGQQWQIWRWFTHALLHFSALHIIFN 157
Query: 71 MSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVT 128
+ W LG GD+ LG+ ++ L+ +SG G Y + + F ++
Sbjct: 158 LLWWWQLG-----GDIEKRLGSLKLIEIFLISAAVSG---TGQYWV-----EGANFGGLS 204
Query: 129 AVGYSCVVFGWMTILSVKQPSSKL----DLFGFLSLPISFAPFESLIFTSIIVPQASFLG 184
V Y+ V + WM L+ K+P L + GF+ + + F+ + I A G
Sbjct: 205 GVVYALVGYLWM--LTWKRPELGLIIQKPIVGFMLVWLILGFFQPFL---AIANMAHLTG 259
Query: 185 HLSGIIVG 192
SGI++G
Sbjct: 260 LASGIVLG 267
>gi|434399081|ref|YP_007133085.1| Rhomboid family protein [Stanieria cyanosphaera PCC 7437]
gi|428270178|gb|AFZ36119.1| Rhomboid family protein [Stanieria cyanosphaera PCC 7437]
Length = 208
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 19/159 (11%)
Query: 44 ETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVL 103
E A+ G WR++++ F H LHL+ NM+AL+ LG +L + G Y L++
Sbjct: 48 EKAIAGEWWRLLSANFLHFGWLHLITNMAALYFLG---RLVEASFGLIRY----LIVYFF 100
Query: 104 SGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM-TILSV-----KQPSSKLDLFGF 157
SG+ + ++ L + E V VG S + G + +IL++ + +K++
Sbjct: 101 SGIGAMFLFTLFTLKTGEE---NVVLVGASAAIMGLIGSILAIFLQIWFKKRTKVN--AR 155
Query: 158 LSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
I +F + +VP+ SF HL G+I+G+ I+
Sbjct: 156 RLRLIIVVIIIQFLFDN-LVPEVSFSSHLFGLIIGFVIS 193
>gi|365860674|ref|ZP_09400469.1| hypothetical protein SPW_0771 [Streptomyces sp. W007]
gi|364009831|gb|EHM30776.1| hypothetical protein SPW_0771 [Streptomyces sp. W007]
Length = 220
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 19/154 (12%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
+G +R++TS F H V+H+ FNM LW LG QL + LG + Y L L +LSGL
Sbjct: 53 EGQWYRLVTSMFLHQEVVHIAFNMLGLWWLG--GQL-EAALGRSRY----LALYLLSGLA 105
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
+ +LL + + ++G S V+G +V D+ P+
Sbjct: 106 GSALTYLLAEPGQ-------GSLGASGAVYGLFGATAVLMRRMNYDMR-----PVLVLLA 153
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
+L FT ++ H+ G+I G IA G++H
Sbjct: 154 LNLAFTFYNRDGIAWEAHVGGLIAGVVIAIGMVH 187
>gi|322802448|gb|EFZ22798.1| hypothetical protein SINV_10941 [Solenopsis invicta]
Length = 247
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 13/154 (8%)
Query: 52 WR-IITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLS---GL 106
WR S F H S +HL +NM S + +E L GT + L+L +LS +
Sbjct: 71 WRSFFLSNFEHGSDMHLYYNMISFILKGSYLEPL----YGTT---NFVLLLAILSFGCSV 123
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
+ + + ++L+Q + A+G+S +F + ++ ++ GF+ +P A
Sbjct: 124 MYVSLGYILMQLTGDYGYFTACAIGFSATLFALKVVALCEERDKLHNISGFI-VPSKLAV 182
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLI 200
+ LI ++VP +SF+GHL GI+VG ++ I
Sbjct: 183 WFELILIHLLVPNSSFIGHLGGILVGCLYSYTFI 216
>gi|319954281|ref|YP_004165548.1| peptidase s54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
gi|319422941|gb|ADV50050.1| Peptidase S54, rhomboid domain protein [Cellulophaga algicola DSM
14237]
Length = 251
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 49/194 (25%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGD---------VGLGTA------YYL 94
W++IT F H H++FNM LW G V E LG GLG A YY
Sbjct: 46 WQVITHMFMHGGPAHILFNMFGLWMFGSSVEEYLGKKQFLFLYFSAGLGAALFQLGFYYY 105
Query: 95 QY---------------TLVLVVLSGLLVLGIYHLLIQRFKLEY--FRR---VTAVGYSC 134
+Y +V ++ + + G+ + + + + + +R + VG S
Sbjct: 106 EYLPIHSELINLGLTSDQIVDMISTNRTIDGLSEVQVSKLQEAFPIYRNTYFASMVGASG 165
Query: 135 VVFGWMTILSVKQPSSKLDLFGFLSLPIS---FAP-------FESLIFTSIIVP-QASFL 183
+ G + V +P+++L L FL +PI F P F +L S P +F+
Sbjct: 166 CIMGVLAAFGVMKPNAELMLM-FLPIPIKAKYFIPGIILLDLFSALSGKSYFSPSNTAFM 224
Query: 184 GHLSGIIVGYAIAW 197
H+ G +VG+ + W
Sbjct: 225 AHVGGAVVGFIMMW 238
>gi|156848694|ref|XP_001647228.1| hypothetical protein Kpol_1002p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156117913|gb|EDO19370.1| hypothetical protein Kpol_1002p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 261
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 18/193 (9%)
Query: 11 EKPA---TSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHL 67
KP T C++ + V++ NI ++GL + D R+ +H+S++HL
Sbjct: 12 NKPPSAVTVCVLALLIVLYVVNLYVNIN-DNLGLRPSSLFDFELSRLSLYPLAHLSIIHL 70
Query: 68 VFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
VFN+ +L+ L + + + TA L T V +G++ + LL + V
Sbjct: 71 VFNVISLFPLLNLYESTHGTVMTAVTLNIT---AVAAGVMYCIVGSLL--------YPDV 119
Query: 128 TAVGYSCVVFGWMTILSVKQPS--SKLDLFG-FLSLPISFAPFESLIFTSIIVPQASFLG 184
G S F + S K+ S + +F ++P +P ++ +++P +SF G
Sbjct: 120 GVAGSSGWFFSLLGYYSFKEASVHPRTPIFKTHYTIPTQLSPLILIVVIFVLIPHSSFWG 179
Query: 185 HLSGIIVGYAIAW 197
H G++VGY + W
Sbjct: 180 HFFGLLVGYFMGW 192
>gi|157373239|ref|YP_001471839.1| rhomboid family protein [Shewanella sediminis HAW-EB3]
gi|157315613|gb|ABV34711.1| rhomboid family protein [Shewanella sediminis HAW-EB3]
Length = 278
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 37/193 (19%)
Query: 13 PATSCIIGICSVIW--FYIQKKNIGYSHVGLSYETAVDGHH----WRIITSAFSHISVLH 66
P T I G+C +I+ F + N Y + LS+ AV G WR+ T + H S LH
Sbjct: 98 PLTLSIFGVCILIFAGFNLGFANPIYEY--LSFFNAVPGTELTDFWRVFTPSLLHFSALH 155
Query: 67 LVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF-KLEY 123
++FN+ W LG + ++G + +L+ LLV G ++Q F +
Sbjct: 156 IIFNLLWWWYLGGKIENKIG--------------ISPLLTLLLVAGTLPNILQYFIGGPH 201
Query: 124 FRRVTAVGYSCVVFGWMTILSVKQPSSKLD----LFGFLSLPISFAPFESLIFTSIIVPQ 179
F ++ V Y V + W I+ VK+P + L GFL L + F FT +
Sbjct: 202 FGGLSGVVYGVVGYTW--IMGVKRPEKGIGLPPALMGFLMLWLVFG------FTDLFGLS 253
Query: 180 ASFLGHLSGIIVG 192
+ H G++VG
Sbjct: 254 IANGAHTGGLVVG 266
>gi|365832927|ref|ZP_09374453.1| hypothetical protein HMPREF1021_03217 [Coprobacillus sp. 3_3_56FAA]
gi|365259760|gb|EHM89743.1| hypothetical protein HMPREF1021_03217 [Coprobacillus sp. 3_3_56FAA]
Length = 214
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 27/199 (13%)
Query: 7 YEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDG-----------HHWRII 55
++ + P T+ +IGIC +++ Y K Y +Y+ G +WR+I
Sbjct: 3 FDYKKYPVTAGVIGICILVYCYTTVK---YDFEMNAYQGIRAGGFNPILVLAGNQYWRLI 59
Query: 56 TSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHL 114
++ F H ++H+ N +L +LG V+E L LG YL L+ L+ ++ ++++
Sbjct: 60 SANFIHFGIMHIFCNCYSLVNLGSVMEYL----LGMKRYL-IILIASALATTILPTVFYI 114
Query: 115 LIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTS 174
L G S +FG M L K D++ +L IS + ++ S
Sbjct: 115 LTGNGASSIMG-----GISGAIFGLMGALLALAWKFK-DVYAYLFKQIS-SSVLLMLLIS 167
Query: 175 IIVPQASFLGHLSGIIVGY 193
I+VP S GH+SG+I G+
Sbjct: 168 ILVPSISLSGHISGMIGGF 186
>gi|119472796|ref|XP_001258417.1| rhomboid family protein, putative [Neosartorya fischeri NRRL 181]
gi|119406569|gb|EAW16520.1| rhomboid family protein, putative [Neosartorya fischeri NRRL 181]
Length = 272
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 21/179 (11%)
Query: 23 SVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ 82
IW +Q ++ + +G+ G +R+ T F H+ H N+ AL L +E+
Sbjct: 44 QTIWSVVQWGSLTPNEIGI-------GSMYRLNTYPFIHVGFFHAFVNLLALTPL--LER 94
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVL--GIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM 140
A + T V + + L GIY +LI++F L VG S VF +
Sbjct: 95 F------EAEHGTLTAVALFIGPLSTFPAGIY-ILIEKFILH--SNTAVVGASVWVFLLL 145
Query: 141 TILSVKQ-PSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
++K S+ G +P +P + SI VP SFLGHLS II+GY + G
Sbjct: 146 GSEAIKTFKSNPYFSLGTTKIPTWTSPLFACALVSIFVPNTSFLGHLSAIIIGYLLGLG 204
>gi|254295337|ref|YP_003061360.1| rhomboid family protein [Hirschia baltica ATCC 49814]
gi|254043868|gb|ACT60663.1| Rhomboid family protein [Hirschia baltica ATCC 49814]
Length = 208
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 31/193 (16%)
Query: 31 KKNIGYSHVGLSYET-----------AVDGHHW-RIITSAFSHISVLHLVFNMSALWSLG 78
N+ +S +G S E V H W R++TS F H+S HL+ NM L+ G
Sbjct: 16 AANVAFSLIGFSNEKFFRANYLLVGDIVQKHQWYRVLTSGFLHVSPGHLLLNMLTLFFFG 75
Query: 79 VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFG 138
++ +G T Y L Y + L+ VL Y +L+Y +AVG S V G
Sbjct: 76 PYLEIKLLG-PTGYLLVYFVSLIAGGAWAVLENYR------RLDY----SAVGASGAVSG 124
Query: 139 WMTILSVKQPSSKLDLFGFLSLP--------ISFAPFESLIFTSIIVPQASFLGHLSGII 190
+ + +P S + LF + +P IS++ F S S I +A G ++G++
Sbjct: 125 ALISFCMFEPFSLIYLFMIIPIPAIVFGVAFISYSAFASGNEDSKIGHEAHLGGAIAGLL 184
Query: 191 VGYAIAWGLIHGM 203
V + G+++ +
Sbjct: 185 VTVCLHPGILNSL 197
>gi|254566099|ref|XP_002490160.1| Possible rhomboid protease, has similarity to eukaryotic rhomboid
proteases including Pcp1p [Komagataella pastoris GS115]
gi|238029956|emb|CAY67879.1| Possible rhomboid protease, has similarity to eukaryotic rhomboid
proteases including Pcp1p [Komagataella pastoris GS115]
gi|328350561|emb|CCA36961.1| rhomboid family protein [Komagataella pastoris CBS 7435]
Length = 258
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 22/149 (14%)
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL--LVLGIYHLLIQR 118
H S LHL FN+ AL S + + + + T L VL V++ L VLG
Sbjct: 72 HSSFLHLFFNIFALISPLSLYERSNGTVHTGVVLN---VLAVVTALPYCVLG-------- 120
Query: 119 FKLEYFRRVTAVGYSC---VVFGWMTIL-SVKQPSSKLDLFGFLSLPISFAPFESLIFTS 174
+ +F +V+ VG S FG+ + L S+ P+ K+ + +P PF L+ ++
Sbjct: 121 --MVFFPKVSVVGASAWCFSFFGYYSYLQSLSYPTFKVQDY---EIPTIATPFILLVASA 175
Query: 175 IIVPQASFLGHLSGIIVGYAIAWGLIHGM 203
+I P +SF+GHL G++ G+A+A G + +
Sbjct: 176 LIFPGSSFIGHLLGLLSGFALAKGYLKPL 204
>gi|388602835|ref|ZP_10161231.1| peptidase [Vibrio campbellii DS40M4]
Length = 280
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T I+ +C+VI+F +Q G L + A +G W R I+ A H SV H+VF
Sbjct: 98 PVTLLIMAVCTVIYF-LQMFGFGDGVFALLHFPAFEGQQWQLWRWISHALLHFSVTHIVF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ L + LQ L+ LSG
Sbjct: 157 NLLWWWQLG-----GDIERRLSSGKLLQIFLISAALSG 189
>gi|167756710|ref|ZP_02428837.1| hypothetical protein CLORAM_02248 [Clostridium ramosum DSM 1402]
gi|374627722|ref|ZP_09700124.1| hypothetical protein HMPREF0978_03444 [Coprobacillus sp.
8_2_54BFAA]
gi|167702885|gb|EDS17464.1| peptidase, S54 family [Clostridium ramosum DSM 1402]
gi|373912961|gb|EHQ44804.1| hypothetical protein HMPREF0978_03444 [Coprobacillus sp.
8_2_54BFAA]
Length = 214
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 27/199 (13%)
Query: 7 YEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDG-----------HHWRII 55
++ + P T+ +IGIC +++ Y K Y +Y+ G +WR+I
Sbjct: 3 FDYKKYPVTAGVIGICILVYCYTTVK---YGFEMNAYQGIRAGGFNPILVLAGNQYWRLI 59
Query: 56 TSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHL 114
++ F H ++H+ N +L +LG V+E L LG YL L+ L+ ++ ++++
Sbjct: 60 SANFIHFGIMHIFCNCYSLVNLGSVMEYL----LGMKRYL-IILIASALATTILPTVFYI 114
Query: 115 LIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTS 174
L G S +FG M L K D++ +L IS + ++ S
Sbjct: 115 LTGNGASSIMG-----GISGAIFGLMGALLALAWKFK-DVYAYLFKQIS-SSVLLMLLIS 167
Query: 175 IIVPQASFLGHLSGIIVGY 193
I+VP S GH+SG+I G+
Sbjct: 168 ILVPSISLSGHISGMIGGF 186
>gi|270307582|ref|YP_003329640.1| rhomboid [Dehalococcoides sp. VS]
gi|270153474|gb|ACZ61312.1| rhomboid [Dehalococcoides sp. VS]
Length = 190
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 20/184 (10%)
Query: 22 CSVIWFYIQ-KKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-V 79
C +++F + IG ++ L TA+ + W IITS F H + HL NM L+ G
Sbjct: 20 CVIVFFGVNFAPQIG-PYLALQPATAIS-YPWTIITSLFVHADLWHLFANMITLYFFGNA 77
Query: 80 VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGW 139
+ Q+ + Q + +++ G L + +L+ Y +G S VF
Sbjct: 78 LLQMIN---------QRSWLIIFFGGGLAGSLLFILLNAGSFGY-----VIGASGAVFAL 123
Query: 140 MTILSVKQPSSKLDLFGF-LSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
L+V +P+SK+ +F + +P+ A S I S + P ++ GHL G++VG A +
Sbjct: 124 GGTLAVLRPNSKVMVFPLPVPIPLWIAVIGSFIILSFL-PSVAWQGHLGGLLVGAACGYL 182
Query: 199 LIHG 202
+ G
Sbjct: 183 IKQG 186
>gi|402572950|ref|YP_006622293.1| hypothetical protein Desmer_2505 [Desulfosporosinus meridiei DSM
13257]
gi|402254147|gb|AFQ44422.1| putative membrane protein [Desulfosporosinus meridiei DSM 13257]
Length = 314
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 29/151 (19%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
G WR +TS F HI LHL+FN+ ALWSLG + + + LV+ ++SG
Sbjct: 175 GELWRFLTSVFIHIGFLHLLFNLYALWSLGPISE-------RNFGHWRFLVIYIMSG--- 224
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTIL---SVKQPS---SKLDLFGFLSLPI 162
L +F + G S +FG + L S+K+PS S L + + + I
Sbjct: 225 ------LGGSIASYFFSTALSAGASGAIFGLLGALLYYSLKRPSLWKSGLGMNLVIVIII 278
Query: 163 SFAPFESLIFTSIIVPQASFLGHLSGIIVGY 193
+F + P HL G+I+G+
Sbjct: 279 NFG-------FGLTQPGIDNYAHLGGLIIGF 302
>gi|66819575|ref|XP_643447.1| hypothetical protein DDB_G0275611 [Dictyostelium discoideum AX4]
gi|60471600|gb|EAL69556.1| hypothetical protein DDB_G0275611 [Dictyostelium discoideum AX4]
Length = 458
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 129 AVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSG 188
+VG+S +F +TI + + L+G +P P+ LI T+ I+P SF+GHLSG
Sbjct: 258 SVGFSGCIFALLTIHCFN--DNLVSLYGITRIPSKLYPWAILIITNFILPMTSFVGHLSG 315
Query: 189 IIVG 192
I++G
Sbjct: 316 ILIG 319
>gi|288555804|ref|YP_003427739.1| rhomboid protein membrane-associated serine peptidase [Bacillus
pseudofirmus OF4]
gi|288546964|gb|ADC50847.1| rhomboid protein, putative membrane-associated serine peptidase
[Bacillus pseudofirmus OF4]
Length = 512
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 12 KPATSCIIGICSVIWFYIQKKNIGYSHV------GLSYETAV-DGHHWRIITSAFSHISV 64
KP + ++ I + FYI ++N G +HV G Y A+ +G WR +S F HI
Sbjct: 182 KPIATYVLLIMIAVMFYIVEQNGGSTHVLTLIEFGAKYNPAILEGEWWRFFSSMFLHIGF 241
Query: 65 LHLVFNMSALWSL-GVVEQL 83
+HL N AL+ L G VE++
Sbjct: 242 IHLFMNSLALFYLGGAVERM 261
>gi|153835509|ref|ZP_01988176.1| GlpG protein [Vibrio harveyi HY01]
gi|444428496|ref|ZP_21223822.1| peptidase [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|148867922|gb|EDL67134.1| GlpG protein [Vibrio harveyi HY01]
gi|444238266|gb|ELU49881.1| peptidase [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 280
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T I+ +C+VI+F +Q G L + A +G W R I+ A H SV H+VF
Sbjct: 98 PVTLLIMAVCTVIYF-LQMFGFGDGVFALLHFPAFEGQQWQLWRWISHALLHFSVTHIVF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ L + LQ L+ LSG
Sbjct: 157 NLLWWWQLG-----GDIERRLSSGKLLQIFLISAALSG 189
>gi|311273152|ref|XP_003133738.1| PREDICTED: rhomboid domain-containing protein 1-like [Sus scrofa]
Length = 299
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ +S LS E W R++ S H+ HL FNM S LW +E+
Sbjct: 39 IWFFLNPLKPLFSSC-LSVEKCYQQKDWQRLLLSPLHHVDDWHLYFNMASMLWKGINLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ +L+G++ L + L + FRR AVG+S V+F +
Sbjct: 98 R----LGSRWFAYIIATFSLLTGVVYLLLEFALAELLDEPGFRRNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVP 178
+ P +++ GF +P FA + L+ I P
Sbjct: 154 NNHYCPGGFVNVLGF-PVPNKFACWAELLAIHFISP 188
>gi|84497160|ref|ZP_00995982.1| membrane spanning protein [Janibacter sp. HTCC2649]
gi|84382048|gb|EAP97930.1| membrane spanning protein [Janibacter sp. HTCC2649]
Length = 260
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 31/204 (15%)
Query: 2 GRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAV-DGHHWRIITSAFS 60
GRPL T IIGIC + ++ + I +++ + D WR +TSAF+
Sbjct: 30 GRPLV--------TLTIIGICVAV--FVGQMAIPSLTDDVAFAPYLGDTQPWRFLTSAFA 79
Query: 61 HI--SVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL--LVLGIYHLLI 116
H + LH+ FNM ALW +G Q + LG A + L+ + L+L H +
Sbjct: 80 HAPNNFLHIGFNMWALWMMG---QYLEPMLGRARFAALYLISAFGGSVVYLLLAFPHSIA 136
Query: 117 QRFKLEYFR-RVTAVGYSCVVFGWMT---ILSVKQPSSKLDLFGFLSLPISFAPFESLIF 172
Q +Y AVG S VFG IL + S ++ +++ ++I
Sbjct: 137 QLNNRDYGPWETAAVGASGAVFGLFGAFLILQRRLGRSAATMYATIAI-------NAVI- 188
Query: 173 TSIIVPQASFLGHLSGIIVGYAIA 196
+VP ++ HL G +VG A A
Sbjct: 189 -GFVVPGIAWQAHLGGFLVGIACA 211
>gi|443626016|ref|ZP_21110448.1| putative membrane protein [Streptomyces viridochromogenes Tue57]
gi|443340440|gb|ELS54650.1| putative membrane protein [Streptomyces viridochromogenes Tue57]
Length = 313
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 98/219 (44%), Gaps = 35/219 (15%)
Query: 15 TSCIIGICSVIWFYIQKKNIG------YSHVGLSY-------ETAVDGHHWRIITSAFSH 61
T +IGIC + ++ + ++G + +G +Y E +G +R++TS F H
Sbjct: 103 TKVLIGICLAV--FLAQLSMGDPFTDRFDLMGRAYVPELGDVEGVAEGQWYRLLTSMFLH 160
Query: 62 ISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKL 121
S +H++FNM +LW +G + LG Y+ LV SGL + +L+ +
Sbjct: 161 GSYIHILFNMLSLWWIGGPLE---AALGRVRYIALYLV----SGLAGSALTYLIAAANQ- 212
Query: 122 EYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQAS 181
++G S +FG +V + D+ ++L + +LIFT + Q +
Sbjct: 213 ------PSLGASGAIFGLFGATAVLMRRLQYDMRPVIALLVI-----NLIFT-FGLAQIA 260
Query: 182 FLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFV 220
+ H+ G++ G + + ++H + L G LV
Sbjct: 261 WQAHIGGLVAGLLVGYAMVHAPREHRTLVQYGTCALVLA 299
>gi|50953938|ref|YP_061226.1| rhomboid family membrane protein [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50950420|gb|AAT88121.1| rhomboid family membrane protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 285
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 15 TSCIIGICSVIWFYIQKKNI-------------GYSHVGLSYETAVDGHHWRIITSAFSH 61
T II +C V+ F +Q I GYSH S + WR++TS F+H
Sbjct: 76 TYAIIAVCVVV-FLLQNAPIVGGRIESALIYAGGYSHPTGSLSPLIAFEPWRMLTSLFAH 134
Query: 62 ISVLHLVFNMSALWSLGVV 80
S++HL NM LW G+
Sbjct: 135 ASLIHLALNMYTLWVFGIA 153
>gi|237732716|ref|ZP_04563197.1| predicted protein [Mollicutes bacterium D7]
gi|229384211|gb|EEO34302.1| predicted protein [Coprobacillus sp. D7]
Length = 209
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 27/199 (13%)
Query: 7 YEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDG-----------HHWRII 55
++ + P T+ +IGIC +++ Y K Y +Y+ G +WR+I
Sbjct: 3 FDYKKYPVTAGVIGICILVYCYTTVK---YGFEMNAYQGIRAGGFNPILVLAGNQYWRLI 59
Query: 56 TSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHL 114
++ F H ++H+ N +L +LG V+E L LG YL L+ L+ ++ ++++
Sbjct: 60 SANFIHFGIMHIFCNCYSLVNLGSVMEYL----LGMKRYL-IILIASALATTILPTVFYI 114
Query: 115 LIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTS 174
L G S +FG M L K D++ +L IS + ++ S
Sbjct: 115 LTGNGASSIMG-----GISGAIFGLMGALLALAWKFK-DVYAYLFKQIS-SSVLLMLLIS 167
Query: 175 IIVPQASFLGHLSGIIVGY 193
I+VP S GH+SG+I G+
Sbjct: 168 ILVPSISLSGHISGMIGGF 186
>gi|348676100|gb|EGZ15918.1| hypothetical protein PHYSODRAFT_507191 [Phytophthora sojae]
Length = 326
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
RI+ S H+ HL NM S LW +E LG+ +L L+VL +LV+ +
Sbjct: 83 RIVASGLIHVDDWHLYHNMISFLWKGYNLE----YKLGSVRFLLTVGYLLVLCHVLVVVV 138
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
+L F++ +VG+S V+F +L+ P+ ++GF +P + + L+
Sbjct: 139 ALVLATGFQMPAPLHQCSVGFSGVLFALKVLLNHNSPAFFSSVYGF-QVPTKYTAWLELV 197
Query: 172 FTSIIVPQASFLGHLSGIIVGY 193
+VP++SF+GH+ GI+ GY
Sbjct: 198 VIHFLVPRSSFMGHMCGILAGY 219
>gi|440796367|gb|ELR17476.1| peptidase, S54 (rhomboid) subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 293
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 72/138 (52%), Gaps = 8/138 (5%)
Query: 57 SAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLL 115
++F H+ +HL +NM S LW +E +G+ + ++ ++S +L++ + +L
Sbjct: 71 ASFFHLDDMHLYYNMVSLLWKGRDLEPR----MGSKRFATLVVLFALVSNMLMV-VGSVL 125
Query: 116 IQRF-KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTS 174
+ RF + AVG+S V+F + +++ +S F + +P + + L+
Sbjct: 126 LDRFADMPGPYNSCAVGFSAVLFA-LKVVTTHYSTSPYSHFMGMLVPTQYLYWFELVLIH 184
Query: 175 IIVPQASFLGHLSGIIVG 192
++VP +SF GHL GI+ G
Sbjct: 185 LLVPGSSFFGHLCGILTG 202
>gi|392945858|ref|ZP_10311500.1| putative membrane protein [Frankia sp. QA3]
gi|392289152|gb|EIV95176.1| putative membrane protein [Frankia sp. QA3]
Length = 341
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 41 LSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYL 94
+ + AVD ++R++T+AF H VLH++FNM AL+ LG QL + LG A YL
Sbjct: 169 IGFRIAVDDQYYRLLTAAFLHAGVLHILFNMYALYLLGF--QLEAI-LGRARYL 219
>gi|159124724|gb|EDP49842.1| rhomboid family protein, putative [Aspergillus fumigatus A1163]
Length = 272
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 21/179 (11%)
Query: 23 SVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ 82
IW +Q ++ + +G+ G +R+ T F H+ H N+ AL L +E+
Sbjct: 44 QTIWSVVQWGSLTPNEIGI-------GSMYRLNTYPFIHVGFFHAFVNLLALTPL--LER 94
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVL--GIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM 140
A + T V + + L GIY +L+++F L VG S +F +
Sbjct: 95 F------EAEHGTLTAVALFIGPLSTFPAGIY-ILVEKFILR--SNTAVVGASVWIFLLL 145
Query: 141 TILSVKQ-PSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
++K S+ G +P +P + SI VP SFLGHLS II+GY + G
Sbjct: 146 GSEAIKTFKSNPYFSLGTTKIPTWTSPLFACALVSIFVPNTSFLGHLSAIIIGYLLGLG 204
>gi|153002839|ref|YP_001368520.1| rhomboid family protein [Shewanella baltica OS185]
gi|151367457|gb|ABS10457.1| Rhomboid family protein [Shewanella baltica OS185]
Length = 281
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHH----WRIITSAFSHISVLHLV 68
P T + +C +I+ + ++ LSY AV WR+ T + H S +H++
Sbjct: 98 PVTLIVFAVCVLIFAAMNLGFANQTYAALSYFGAVPSSEFSQFWRVFTPSLLHFSAMHVI 157
Query: 69 FNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF-KLEYFR 125
FN+ W LG + ++G T L++L L V G +IQ + F
Sbjct: 158 FNLLWWWYLGGKIETRIG------------TAPLLIL--LFVAGTLPNVIQYYVGGPNFG 203
Query: 126 RVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE----SLIFTSIIVPQAS 181
++ V Y+ V + W ++ +++P+S +D P S+ F +L FT I+ +
Sbjct: 204 GLSGVVYAVVGYTW--VMGIRKPASGID------FPPSYMAFMMIWLALGFTDILGVAVA 255
Query: 182 FLGHLSGIIVGYA 194
H+ G+++G A
Sbjct: 256 NGAHIGGLLIGLA 268
>gi|42525643|ref|NP_970741.1| rhomboid [Treponema denticola ATCC 35405]
gi|422340835|ref|ZP_16421776.1| rhomboid family protein [Treponema denticola F0402]
gi|449103871|ref|ZP_21740614.1| hypothetical protein HMPREF9730_01511 [Treponema denticola AL-2]
gi|449106028|ref|ZP_21742720.1| hypothetical protein HMPREF9729_00985 [Treponema denticola ASLM]
gi|449108116|ref|ZP_21744760.1| hypothetical protein HMPREF9722_00456 [Treponema denticola ATCC
33520]
gi|449110633|ref|ZP_21747233.1| hypothetical protein HMPREF9735_00282 [Treponema denticola ATCC
33521]
gi|449114556|ref|ZP_21751033.1| hypothetical protein HMPREF9721_01551 [Treponema denticola ATCC
35404]
gi|449118805|ref|ZP_21755206.1| hypothetical protein HMPREF9725_00671 [Treponema denticola H1-T]
gi|449121194|ref|ZP_21757546.1| hypothetical protein HMPREF9727_00306 [Treponema denticola MYR-T]
gi|449124938|ref|ZP_21761255.1| hypothetical protein HMPREF9723_01299 [Treponema denticola OTK]
gi|449129942|ref|ZP_21766170.1| hypothetical protein HMPREF9724_00835 [Treponema denticola SP37]
gi|451967767|ref|ZP_21920996.1| hypothetical protein HMPREF9728_00162 [Treponema denticola US-Trep]
gi|41815654|gb|AAS10622.1| rhomboid family protein [Treponema denticola ATCC 35405]
gi|325475239|gb|EGC78424.1| rhomboid family protein [Treponema denticola F0402]
gi|448940621|gb|EMB21526.1| hypothetical protein HMPREF9723_01299 [Treponema denticola OTK]
gi|448944577|gb|EMB25455.1| hypothetical protein HMPREF9724_00835 [Treponema denticola SP37]
gi|448951420|gb|EMB32233.1| hypothetical protein HMPREF9727_00306 [Treponema denticola MYR-T]
gi|448951833|gb|EMB32642.1| hypothetical protein HMPREF9725_00671 [Treponema denticola H1-T]
gi|448956181|gb|EMB36943.1| hypothetical protein HMPREF9721_01551 [Treponema denticola ATCC
35404]
gi|448960007|gb|EMB40724.1| hypothetical protein HMPREF9735_00282 [Treponema denticola ATCC
33521]
gi|448961966|gb|EMB42660.1| hypothetical protein HMPREF9722_00456 [Treponema denticola ATCC
33520]
gi|448964324|gb|EMB44996.1| hypothetical protein HMPREF9730_01511 [Treponema denticola AL-2]
gi|448966596|gb|EMB47251.1| hypothetical protein HMPREF9729_00985 [Treponema denticola ASLM]
gi|451703553|gb|EMD57919.1| hypothetical protein HMPREF9728_00162 [Treponema denticola US-Trep]
Length = 209
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 51 HWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVL 109
+W+ T F H HL FNM AL+ GV VE+ +GT ++ Y L++ + G+L
Sbjct: 53 YWQFFTYQFVHGDFFHLAFNMLALFFFGVPVER----KIGTKEFILYYLLIGTIGGILSF 108
Query: 110 GIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
+Y F +T +G S +FG + + +V P+S + ++G + +P
Sbjct: 109 LVY-------AATGFYTITLIGASGAIFGVLLLYAVLYPNSVIYIWGVIPVP 153
>gi|359419226|ref|ZP_09211185.1| putative rhomboid family protein [Gordonia araii NBRC 100433]
gi|358244841|dbj|GAB09254.1| putative rhomboid family protein [Gordonia araii NBRC 100433]
Length = 218
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 32/163 (19%)
Query: 36 YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYL 94
+++ L+ + +WR++TS F H+S++H+ NM +L LG ++E + LGTA +L
Sbjct: 27 FNNSTLTPTDIANHEYWRLLTSGFLHLSIMHIAVNMISLVLLGTIIEPI----LGTARFL 82
Query: 95 QYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM-----TILSVKQPS 149
LV + V L G S ++G M +L K P+
Sbjct: 83 LVYLVALFGGSAAV-----------TLLSGTNTATAGASGAIYGLMGAMLVIVLKFKAPA 131
Query: 150 SKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
++ A IF SI VP S +GHL G++ G
Sbjct: 132 GQV-----------IAIIAVNIFISISVPGISLVGHLGGLLFG 163
>gi|70992609|ref|XP_751153.1| rhomboid family protein [Aspergillus fumigatus Af293]
gi|74670449|sp|Q4WLP9.1|RBD2_ASPFU RecName: Full=Rhomboid protein 2
gi|66848786|gb|EAL89115.1| rhomboid family protein, putative [Aspergillus fumigatus Af293]
Length = 272
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 21/179 (11%)
Query: 23 SVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ 82
IW +Q ++ + +G+ G +R+ T F H+ H N+ AL L +E+
Sbjct: 44 QTIWSVVQWGSLTPNEIGI-------GSMYRLNTYPFIHVGFFHAFVNLLALTPL--LER 94
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVL--GIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM 140
A + T V + + L GIY +L+++F L VG S +F +
Sbjct: 95 F------EAEHGTLTAVALFIGPLSTFPAGIY-ILVEKFILR--SNTAVVGASVWIFLLL 145
Query: 141 TILSVKQ-PSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
++K S+ G +P +P + SI VP SFLGHLS II+GY + G
Sbjct: 146 GSEAIKTFKSNPYFSLGTTKIPTWTSPLFACALVSIFVPNTSFLGHLSAIIIGYLLGLG 204
>gi|183220412|ref|YP_001838408.1| hypothetical protein LEPBI_I1008 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189910526|ref|YP_001962081.1| rhomboid family protein [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167775202|gb|ABZ93503.1| Rhomboid family protein [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167778834|gb|ABZ97132.1| Conserved hypothetical protein; putative membrane protein
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 274
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 16/158 (10%)
Query: 38 HVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYT 97
++GLS E G W++++ AF H S LH++FNM +LW G +L +V G +L++
Sbjct: 49 YLGLSPELVFRGWVWQLVSYAFLHGSFLHILFNMLSLWMFG--SELAEV-WGERAFLKFY 105
Query: 98 LVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGF 157
L G+ + + I + VG S ++G + + P+ +L F
Sbjct: 106 FFTAFLGGIGTITAQYFGIP--------QGVVVGASASIYGLLVAYGMTWPNR--ELLVF 155
Query: 158 LSLPISFAPFESLIFTSIIVPQA---SFLGHLSGIIVG 192
L P+ F ++ ++ Q + HL G I G
Sbjct: 156 LIFPMRAKYFVMIVMLMVLFAQGERVAHFAHLGGAIGG 193
>gi|311277646|ref|YP_003939877.1| rhomboid protease [Enterobacter cloacae SCF1]
gi|308746841|gb|ADO46593.1| Rhomboid protease [Enterobacter cloacae SCF1]
Length = 274
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 21/143 (14%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITSAFSHISVLHLV 68
P T CI+ C ++ +I +G V Y+ +++ WR +T AF H S+LH++
Sbjct: 93 PFTWCIMMACILV--FIVMNIVGDRAVMGWLAWPYDPSLNFELWRYVTHAFMHFSLLHIL 150
Query: 69 FNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
FN+ W L G VE+ LG+ + T++ +LSG + Q+F +F +
Sbjct: 151 FNLLWWWYLGGAVEKR----LGSGKLIVITVISALLSGFIQ--------QKFSGPWFGGL 198
Query: 128 TAVGYSCVVFGWMTILSVKQPSS 150
+ V Y+ + + W+ + P S
Sbjct: 199 SGVVYALMGYVWLR--GERDPQS 219
>gi|119714290|ref|YP_921255.1| rhomboid family protein [Nocardioides sp. JS614]
gi|119534951|gb|ABL79568.1| Rhomboid family protein [Nocardioides sp. JS614]
Length = 306
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
DG +W+++TS F+H+ LH+ FNM AL+ LG QL ++ +G + L L +LSGL
Sbjct: 139 DGAYWQLLTSTFTHVQPLHIAFNMFALYVLG--PQL-ELAIGRIRF----LALYLLSGLT 191
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSV 145
+ + F+ VG S +FG M L V
Sbjct: 192 GSALVYWASPEFQ-------ATVGASGAIFGLMGALLV 222
>gi|154422081|ref|XP_001584053.1| Clan S-, family S54, Rhomboid-like serine peptidase [Trichomonas
vaginalis G3]
gi|121918298|gb|EAY23067.1| Clan S-, family S54, Rhomboid-like serine peptidase [Trichomonas
vaginalis G3]
Length = 256
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 86/205 (41%), Gaps = 14/205 (6%)
Query: 12 KPATSCIIGICSVIWFYIQKK---NIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLV 68
+PAT CII +++ +Q K + + + YE + + W++ TS F H S HL
Sbjct: 13 QPATVCIITTLIIVYVSMQMKVEYREYWKYALIPYEIEIR-NFWKLFTSPFVHSSFPHLF 71
Query: 69 FNMSALWS-LGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHL--LIQRFKLEYFR 125
N+ +W +E+ G A+ + + VL GL GI L + F L Y++
Sbjct: 72 LNIVFIWQRFSHIEKRA----GMAFLFMHVFLFSVLIGLTYSGIIILFSVAGCFGL-YYK 126
Query: 126 RVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGH 185
V +G + ++ I S + L G + +P + P I I + S H
Sbjct: 127 PV--IGMTSILLALNVIESQLSSNPYSSLLGLIHVPTRWLPIAISITYHIALSNVSTFAH 184
Query: 186 LSGIIVGYAIAWGLIHGMNNYWALS 210
+ + VGY + G+ W +
Sbjct: 185 ICALTVGYTYWLIVGKGLRRLWGTT 209
>gi|326778165|ref|ZP_08237430.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
gi|326658498|gb|EGE43344.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
Length = 300
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 20/183 (10%)
Query: 42 SYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLV 101
S E +G +R++TS F H V+H+ FNM LW LG QL + LG + Y L L
Sbjct: 128 SIEGVAEGQWYRLVTSMFLHQEVVHIAFNMLGLWWLG--GQL-EAALGRSRY----LALY 180
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
+LSGL + +L+ + ++G S V+G +V D+ L L
Sbjct: 181 LLSGLAGSALTYLIAAPNQ-------GSLGASGAVYGLFGATAVLMRRMNYDMRPVLVL- 232
Query: 162 ISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVY 221
++ + + I ++ H+ G+I G IA G++H G LV +
Sbjct: 233 LAINMVFTFTWGGI-----AWEAHVGGLIAGVVIAVGMVHAPRERRTAVQAGTCALVLLA 287
Query: 222 SLK 224
++
Sbjct: 288 TVA 290
>gi|366995179|ref|XP_003677353.1| hypothetical protein NCAS_0G01130 [Naumovozyma castellii CBS 4309]
gi|342303222|emb|CCC71000.1| hypothetical protein NCAS_0G01130 [Naumovozyma castellii CBS 4309]
Length = 269
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 20/169 (11%)
Query: 52 WRIITSAFSHISVLHLVFNMSAL-WSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
+R+ T H+S+ HL FN++ + L + E GT Y + + V++GLL
Sbjct: 55 YRLSTYPLIHLSIFHLFFNIAGIIGPLTIFESRH----GTVYTGIFLNMSAVITGLLYCI 110
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVK-QPSSKLDLFGFLSLPISFAPFES 169
+ LL + + G+ FG+ +L +P + GF +P P
Sbjct: 111 VGQLLYPTVSV-----AGSSGWCFTFFGYFAVLESHIRPRYAIGGSGF-GIPTIMTPLVL 164
Query: 170 LIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSML--GWIV 216
L+ ++++P +SF GHL G+I+GYA+ G+ W +L GWI+
Sbjct: 165 LLVIAVLIPGSSFWGHLFGLIIGYAV------GLKEPWVHKLLPPGWII 207
>gi|441509684|ref|ZP_20991598.1| rhomboid family protein [Gordonia aichiensis NBRC 108223]
gi|441446200|dbj|GAC49559.1| rhomboid family protein [Gordonia aichiensis NBRC 108223]
Length = 230
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 28/191 (14%)
Query: 36 YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQ 95
+ H L +G +WR++T+ F H +V H+ NM +L+ LG + +GLG Y +
Sbjct: 39 FQHGDLVRADVANGEYWRLLTAGFLHFTVAHIALNMISLYILG-RDLEAALGLGR-YLMV 96
Query: 96 YTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLF 155
Y + L S ++L F+ R + G S ++G M + V +++
Sbjct: 97 YFVALFGGSAAVML---------FEAGNVR---SAGASGAIYGLMGAVLVVVLKARVSPT 144
Query: 156 GFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH--------GMNNYW 207
G +++ + +L+F S+ +P S H+ G++ G A +I+ G
Sbjct: 145 GVITIIV-----INLVF-SVTMPGISLAAHVGGLVFGAAATAAIIYLPGVVLHRGSRTQQ 198
Query: 208 ALSMLGWIVLV 218
S +GW+ LV
Sbjct: 199 NASRVGWVALV 209
>gi|312193973|ref|YP_004014034.1| rhomboid family protein [Frankia sp. EuI1c]
gi|311225309|gb|ADP78164.1| Rhomboid family protein [Frankia sp. EuI1c]
Length = 390
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 13/76 (17%)
Query: 15 TSCIIGICSVIWF-----------YIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHIS 63
T +IGIC V + +I + + YS +G+ + A +WR++T+AF H S
Sbjct: 178 TKILIGICLVAYVLEGVPGLTGTSHINQFTLDYSLIGV--DIAQKHEYWRLVTAAFLHGS 235
Query: 64 VLHLVFNMSALWSLGV 79
VLH+ FNM AL+ LG
Sbjct: 236 VLHIAFNMYALFLLGT 251
>gi|403727958|ref|ZP_10947871.1| rhomboid family protein [Gordonia rhizosphera NBRC 16068]
gi|403203710|dbj|GAB92202.1| rhomboid family protein [Gordonia rhizosphera NBRC 16068]
Length = 254
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 38/184 (20%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQ--YTLVLVVLSG 105
DG +WR++T+ F H SV H+ NM +L+ LG L ++ +G YL T +L +
Sbjct: 71 DGEYWRLLTAGFLHFSVTHIAVNMLSLYILG--RDL-EIAIGIPRYLGVYLTALLGGSAA 127
Query: 106 LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMT---ILSVKQPSSKLDLFGFLSLPI 162
++VLG + V A G S ++G M ++ +K +S + + L +
Sbjct: 128 VMVLGADN------------GVNA-GASGAIYGLMGAVLVVVIKARASPTPVITIIVLNL 174
Query: 163 SFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHG--------MNNYWALSMLGW 214
S+ +P S H+ G++ G A G+I G A S +GW
Sbjct: 175 VL---------SVTIPGISLFAHVGGLVFGAAATAGIIFGPQWVLAPERRTAAAASRVGW 225
Query: 215 IVLV 218
I ++
Sbjct: 226 IAMI 229
>gi|182437510|ref|YP_001825229.1| hypothetical protein SGR_3717 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178466026|dbj|BAG20546.1| putative membrane protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 285
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 20/183 (10%)
Query: 42 SYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLV 101
S E +G +R++TS F H V+H+ FNM LW LG QL + LG + Y L L
Sbjct: 113 SIEGVAEGQWYRLVTSMFLHQEVVHIAFNMLGLWWLG--GQL-EAALGRSRY----LALY 165
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
+LSGL + +L+ + ++G S V+G +V D+ P
Sbjct: 166 LLSGLAGSALTYLIAAPNQ-------GSLGASGAVYGLFGATAVLMRRMNYDMR-----P 213
Query: 162 ISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVY 221
+ +++FT ++ H+ G+I G IA G++H G LV +
Sbjct: 214 VLVLLAINMVFT-FTWGGIAWEAHVGGLIAGVVIAVGMVHAPRERRTAVQAGTCALVLLA 272
Query: 222 SLK 224
++
Sbjct: 273 TVA 275
>gi|307213224|gb|EFN88719.1| Rhomboid domain-containing protein 1 [Harpegnathos saltator]
Length = 247
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 11/184 (5%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYS--HVGLSYETAVDGHHWR-IITSAFSHISVLHLVF 69
PAT +IG+ S YI + ++ V +S +WR S F H S +HL +
Sbjct: 32 PAT--LIGVISQTLLYIGLIKVPWNAEEVCISAVKIFKYKNWRSFFFSNFEHGSDMHLYY 89
Query: 70 NM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVT 128
NM S + +E + GT ++ +L + + + ++L+Q +
Sbjct: 90 NMISFILKGSYLEPI----YGTMNFVLLLFILSTGCSAMYVSLGYILMQLTGDYGYYTTC 145
Query: 129 AVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSG 188
A+G+S +F I ++ ++ GF + A + LI ++VP ASF+GHL G
Sbjct: 146 AIGFSATLFALKVIALCEERDRLHNINGF-QVQSKLAVWVELILIHLLVPNASFVGHLGG 204
Query: 189 IIVG 192
I+VG
Sbjct: 205 ILVG 208
>gi|114049479|ref|YP_740029.1| rhomboid family protein [Shewanella sp. MR-7]
gi|113890921|gb|ABI44972.1| Rhomboid family protein [Shewanella sp. MR-7]
Length = 280
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 33/196 (16%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDG----HHWRIITSAFSHISVLHLV 68
P T I G+C +I+ + G + LSY AV WR+ T + H S +H++
Sbjct: 98 PVTLIIFGLCVLIYAAMNLGFGGPVYETLSYFGAVPDTSVSQFWRVFTPSLMHFSAMHII 157
Query: 69 FNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF-KLEYFR 125
FN+ W LG + ++G T L++L LLV G +IQ + F
Sbjct: 158 FNLLWWWYLGGKIETRIG------------TAPLLIL--LLVAGTLPNVIQYYVSGPNFG 203
Query: 126 RVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE----SLIFTSIIVPQAS 181
++ V Y+ + W ++ +++P++ + LP S+ F L FT + +
Sbjct: 204 GLSGVVYAVAGYTW--VMGIRKPAAG------IGLPPSYMGFMLIWLVLGFTDFLGVSVA 255
Query: 182 FLGHLSGIIVGYAIAW 197
H+ G+++G A W
Sbjct: 256 NGAHIGGLLIGLAQGW 271
>gi|449117125|ref|ZP_21753569.1| hypothetical protein HMPREF9726_01554 [Treponema denticola H-22]
gi|448952389|gb|EMB33193.1| hypothetical protein HMPREF9726_01554 [Treponema denticola H-22]
Length = 209
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 51 HWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
+W+ T F H HL FNM AL+ GV + +GT ++ Y L++ + G+L
Sbjct: 53 YWQFFTYQFVHGDFFHLAFNMLALFFFGVPV---ECKIGTKEFILYYLLIGTIGGILSFL 109
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
+Y F +T +G S +FG + + +V P+S + ++G + +P
Sbjct: 110 VY-------AATGFYTITLIGASGAIFGVLLLYAVLYPNSVIYIWGVIPVP 153
>gi|410614708|ref|ZP_11325747.1| GlpG protein [Glaciecola psychrophila 170]
gi|410165706|dbj|GAC39636.1| GlpG protein [Glaciecola psychrophila 170]
Length = 286
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 6 FYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAV----DGHHWRIITSAFSH 61
Y++ + P TS I+ IC VI + + I + L + G WR++ A H
Sbjct: 95 LYDLKQAPFTSSILAICLVI-YLLAMIGISGPYFWLKIQPIAILIDSGQWWRLLGPALIH 153
Query: 62 ISVLHLVFNMSALWSLG 78
SVLH+ FNM WSLG
Sbjct: 154 FSVLHIAFNMLWWWSLG 170
>gi|453054357|gb|EMF01810.1| hypothetical protein H340_04358 [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 286
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 96/218 (44%), Gaps = 43/218 (19%)
Query: 10 MEKPA-----TSCIIGICSVIWFYIQKKNIGYSHVGL----------SYETAVDGHHWRI 54
+E+P T ++GI IW + K G VG E +G +R+
Sbjct: 69 VERPGDPFLVTKVLLGINIAIWIAVMVK--GQDVVGTLELVGRDPFQDGEGVAEGQWYRL 126
Query: 55 ITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHL 114
+TS F H SV+H+ FNM +LW LG L A+ L L +LSGL + +L
Sbjct: 127 LTSLFLHESVMHIGFNMLSLWWLGPP-------LEAAFGRARYLALYLLSGLGGGALTYL 179
Query: 115 LIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFT- 173
++ Y G S +FG + +V K D+ ++L + +LIFT
Sbjct: 180 MVDPGGRSY-------GASGAIFGLLGATAVLMRRLKYDMRPVMALLVL-----NLIFTF 227
Query: 174 --SIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWAL 209
+ I +A H+ G++VG +A+G++H AL
Sbjct: 228 TWNNIAKEA----HIGGLVVGALVAYGMVHAPRARRAL 261
>gi|145221663|ref|YP_001132341.1| rhomboid family protein [Mycobacterium gilvum PYR-GCK]
gi|145214149|gb|ABP43553.1| Rhomboid family protein [Mycobacterium gilvum PYR-GCK]
Length = 279
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 83/181 (45%), Gaps = 22/181 (12%)
Query: 15 TSCIIGICSVIWFYIQKKNIGYSHV-GLSYETAVDGHHWRIITSAFSHISVLHLVFNMSA 73
T +IGI +++ F +Q + G GL DG +R++TSAF H + HL FNM A
Sbjct: 70 TYALIGI-NLLAFALQMASPGLQRAFGLWSPAVADGEMYRLLTSAFLHFGLTHLAFNMLA 128
Query: 74 LWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYS 133
L+ +G + LG A ++ TL LV G VL +Y L + G S
Sbjct: 129 LYFVGPPL---EAALGRARFI--TLYLVSALGGSVL-VYLLTLNALT---------AGAS 173
Query: 134 CVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI--FTSIIVPQASFLGHLSGIIV 191
VFG V +D+ +++ + F LI FTS + S+ GH+ G++
Sbjct: 174 GAVFGLFGATFVVGRKLNMDVRSVMAIIVLNLAFTFLIPLFTSQNI---SWQGHIGGLVT 230
Query: 192 G 192
G
Sbjct: 231 G 231
>gi|170766588|ref|ZP_02901041.1| peptidase, S54 (rhomboid) family [Escherichia albertii TW07627]
gi|170124026|gb|EDS92957.1| peptidase, S54 (rhomboid) family [Escherichia albertii TW07627]
Length = 276
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C ++ +I + +G V L +E A+ WR T
Sbjct: 84 PFFATLRERAGPVTWAVMIACVLV--FIAMQILGDQEVMLWLAWPFEPALKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|225874838|ref|YP_002756297.1| S54 (rhomboid) family peptidase [Acidobacterium capsulatum ATCC
51196]
gi|225792351|gb|ACO32441.1| peptidase, S54 (rhomboid) family [Acidobacterium capsulatum ATCC
51196]
Length = 299
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 16/96 (16%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYS----------HVGLSYETAVDGHH--WRIITSAFS 60
PAT ++GI +++ ++ + G+S + G + V HH WR+IT+ F
Sbjct: 55 PATYTLVGINCLVYLWMCLR--GFSPWAPTTLQLYYSGANIGPLVLAHHQWWRLITAMFV 112
Query: 61 HISVLHLVFNMSALWSLGVVEQ--LGDVGLGTAYYL 94
H ++HL NM LW+LG++ + +G VG+ AY L
Sbjct: 113 HGGIIHLGVNMWCLWNLGLLAEPLMGPVGVFAAYLL 148
>gi|160877584|ref|YP_001556900.1| rhomboid family protein [Shewanella baltica OS195]
gi|378710793|ref|YP_005275687.1| rhomboid protease [Shewanella baltica OS678]
gi|418022902|ref|ZP_12661888.1| Rhomboid protease [Shewanella baltica OS625]
gi|160863106|gb|ABX51640.1| Rhomboid family protein [Shewanella baltica OS195]
gi|315269782|gb|ADT96635.1| Rhomboid protease [Shewanella baltica OS678]
gi|353537904|gb|EHC07460.1| Rhomboid protease [Shewanella baltica OS625]
Length = 281
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHH----WRIITSAFSHISVLHLV 68
P T + +C +I+ + ++ LSY AV WR+ T + H S +H++
Sbjct: 98 PVTLIVFAVCVLIFAAMNLGFANQTYAALSYFGAVPNSEFSQFWRVFTPSLLHFSAMHVI 157
Query: 69 FNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF-KLEYFR 125
FN+ W LG + ++G T L++L L V G +IQ + F
Sbjct: 158 FNLLWWWYLGGKIETRIG------------TAPLLIL--LFVAGTLPNVIQYYVGGPNFG 203
Query: 126 RVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE----SLIFTSIIVPQAS 181
++ V Y+ V + W ++ +++P++ +D P S+ F +L FT I+ +
Sbjct: 204 GLSGVVYAVVGYTW--VMGIRKPTAGID------FPPSYMAFMMIWLALGFTDILGVAVA 255
Query: 182 FLGHLSGIIVGYA 194
H+ G+++G A
Sbjct: 256 NGAHIGGLLIGLA 268
>gi|431917916|gb|ELK17145.1| Rhomboid domain-containing protein 1 [Pteropus alecto]
Length = 189
Score = 43.9 bits (102), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 8/155 (5%)
Query: 26 WFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQL 83
WF++ Y LS E W R++ S F H HL FNM S LW +E+
Sbjct: 40 WFFLSPLKPLYGSC-LSVEKCFQQKDWQRLLLSPFHHADDWHLYFNMVSLLWKGINLER- 97
Query: 84 GDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTIL 143
LG+ ++ +L+G++ L + + FR AVG+S V+F +
Sbjct: 98 ---RLGSKWFAYVIATFSLLTGVVYLFLELAFAEFMDEPSFRMNCAVGFSGVLFALKVLN 154
Query: 144 SVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVP 178
+ P + + GF +P FA + L+ ++VP
Sbjct: 155 NHYFPGGFVSVMGF-PVPNKFACWAELVAIHLMVP 188
>gi|113972230|ref|YP_736023.1| rhomboid family protein [Shewanella sp. MR-4]
gi|113886914|gb|ABI40966.1| Rhomboid family protein [Shewanella sp. MR-4]
Length = 280
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 33/196 (16%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDG----HHWRIITSAFSHISVLHLV 68
P T I G+C +I+ + G + LSY AV WR+ T + H S +H++
Sbjct: 98 PVTLIIFGLCVLIYAAMNLGFGGPVYETLSYFGAVPDTSVSQFWRVFTPSLMHFSAMHII 157
Query: 69 FNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF-KLEYFR 125
FN+ W LG + ++G T L++L LLV G ++Q + F
Sbjct: 158 FNLLWWWYLGGKIETRIG------------TAPLLIL--LLVAGTLPNVVQYYVSGPNFG 203
Query: 126 RVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE----SLIFTSIIVPQAS 181
++ V Y+ + W ++ +++P++ + LP S+ F L FT + +
Sbjct: 204 GLSGVVYAVAGYTW--VMGIRKPAAG------IGLPPSYMGFMLIWLMLGFTDFLGVSVA 255
Query: 182 FLGHLSGIIVGYAIAW 197
H+ G+++G A W
Sbjct: 256 NGAHIGGLLIGLAQGW 271
>gi|410101899|ref|ZP_11296827.1| hypothetical protein HMPREF0999_00599 [Parabacteroides sp. D25]
gi|409239697|gb|EKN32481.1| hypothetical protein HMPREF0999_00599 [Parabacteroides sp. D25]
Length = 201
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 15 TSCIIGICSVIWFY-IQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSA 73
T IIGI V+ F + + + Y T + ++RI+T F H + HL+ NM
Sbjct: 3 TYLIIGITVVLSFICFSNRELFMKLAFIPYRTIRNHEYYRIVTHGFIHADMTHLLVNMFT 62
Query: 74 LWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVG 131
WS G + +G G+ YL + G++V +Y LI+R Y+ + A G
Sbjct: 63 FWSFGLYIERTFRYMGFGSGAYLAF-----YFGGMIVASLYD-LIKRRNDPYYVSIGASG 116
Query: 132 -YSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
S V+F + + P K+ F L +P
Sbjct: 117 AVSAVLFTSIFL----DPWGKILFFAVLPVP 143
>gi|217975426|ref|YP_002360177.1| rhomboid family protein [Shewanella baltica OS223]
gi|217500561|gb|ACK48754.1| Rhomboid family protein [Shewanella baltica OS223]
Length = 281
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHH----WRIITSAFSHISVLHLV 68
P T + +C +I+ + ++ LSY AV WR+ T + H S +H++
Sbjct: 98 PVTLIVFAVCVLIFAAMNLGFANQTYAALSYFGAVPNSEFSQFWRVFTPSLLHFSAMHVI 157
Query: 69 FNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF-KLEYFR 125
FN+ W LG + ++G T L++L L V G +IQ + F
Sbjct: 158 FNLLWWWYLGGKIETRIG------------TAPLLIL--LFVAGTLPNVIQYYVGGPNFG 203
Query: 126 RVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE----SLIFTSIIVPQAS 181
++ V Y+ V + W ++ +++P++ +D P S+ F +L FT I+ +
Sbjct: 204 GLSGVVYAVVGYTW--VMGIRKPAAGID------FPPSYMAFMIIWLALGFTDILGVAVA 255
Query: 182 FLGHLSGIIVGYA 194
H+ G+++G A
Sbjct: 256 NGAHIGGLLIGLA 268
>gi|87119015|ref|ZP_01074913.1| Rhomboid-like protein [Marinomonas sp. MED121]
gi|86165406|gb|EAQ66673.1| Rhomboid-like protein [Marinomonas sp. MED121]
Length = 290
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 17/157 (10%)
Query: 43 YETAVDGH-HWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVL 100
+ +D H +WR+IT F H S++H+ FN+ +W +G +E++ +G+ Y L+L
Sbjct: 134 FSYVLDNHQYWRLITPIFIHFSMMHIAFNLLWVWDIGRKIEKV----IGSVLY----LIL 185
Query: 101 VVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGW-MTILSVKQP---SSKLDLFG 156
VV++ L + +L+ + F ++ V Y+ + F W M L P S + +F
Sbjct: 186 VVITALASNYLQYLVTES---PLFGGMSGVVYAIIGFAWLMPKLIPNCPNLVSKPIMMFL 242
Query: 157 FLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGY 193
+ L + + F I I A +G +SG+I Y
Sbjct: 243 MVWLALGYTTFFEQIGLGKIANTAHLVGLISGLICAY 279
>gi|411007398|ref|ZP_11383727.1| hypothetical protein SgloC_31738 [Streptomyces globisporus C-1027]
Length = 302
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 107/240 (44%), Gaps = 54/240 (22%)
Query: 3 RPLFYEIMEKPAT--SCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
RP EI+++ A + + G ++Y GY G++ DG +R++T AF
Sbjct: 89 RP---EIVDRFAVLGAALTGPDGEQYYYRGDTFPGYELTGIA-----DGEWYRLVTGAFL 140
Query: 61 HI------SVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYH 113
H+ V+HL+FNM ALW++G VE LG A YL L+ V +LV +
Sbjct: 141 HLPPDASFGVMHLLFNMFALWNIGRAVEGQ----LGRARYLALYLLSAVGGSVLV----Y 192
Query: 114 LLIQRFKLEYFRRVTAVGYSCVVFG-----WMTILSVKQPSSKLDLF--GFLSLPISFAP 166
LL + VG S VFG W+ + + ++ F GFL +
Sbjct: 193 LLAP--------DTSTVGASGAVFGLAAAYWVIHRRLGHDMAAVNRFMAGFLIWMVL--- 241
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYW--ALSMLGWIVLVFVYSLK 224
S +FT S+ GHL G++ G + +GL + AL + G VL+ ++++
Sbjct: 242 --SALFT-------SWQGHLGGLLTGALVTYGLAYAPARLRTGALQLAGGAVLLGLFAVA 292
>gi|111226097|ref|YP_716891.1| hypothetical protein FRAAL6764 [Frankia alni ACN14a]
gi|111153629|emb|CAJ65387.1| Hypothetical protein; putative membrane protein [Frankia alni
ACN14a]
Length = 252
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 41 LSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYL 94
+ + A D ++R++T+AF H VLH++FNM AL+ LG QL + LG A YL
Sbjct: 80 IGFRIAADDQYYRLLTAAFLHAGVLHILFNMYALYLLGF--QLEAI-LGRARYL 130
>gi|407071373|ref|ZP_11102211.1| thiosulfate sulfurtransferase GlpG [Vibrio cyclitrophicus ZF14]
Length = 280
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 91/204 (44%), Gaps = 40/204 (19%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T ++ +C VI F +Q+ G + + AVDG W R ++ A H SV+H+ F
Sbjct: 98 PVTLSLMLVCVVI-FVLQQIGFGQAIFNALHFPAVDGQQWQLWRWLSHAVLHFSVMHIAF 156
Query: 70 NMSALWSLGVVEQLGDV--GLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
N+ W LG GD+ LG+ LQ + LSG G Y + + F +
Sbjct: 157 NILWWWQLG-----GDIEKKLGSLKLLQIFAISSALSG---AGQYWV-----EGANFGGL 203
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLD----LFGFLSLPISFA---PFESLIFTSIIVPQA 180
+ V Y+ V G++ IL K P L+ + GF+ L + PF ++ T+
Sbjct: 204 SGVVYALV--GYLWILGSKAPQLGLNIPRQIVGFMLLWLVLGYMQPFMAIANTA------ 255
Query: 181 SFLGHLSGIIVGYAIAWGLIHGMN 204
HL+G+ G I GLI M
Sbjct: 256 ----HLAGLAAGLII--GLIDSMK 273
>gi|145596990|ref|YP_001161287.1| rhomboid family protein [Salinispora tropica CNB-440]
gi|145306327|gb|ABP56909.1| Rhomboid family protein [Salinispora tropica CNB-440]
Length = 303
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
DG +R++T+ F H V+HL+ NM ALW LG + + LG A +L LV L G
Sbjct: 135 ADGQWYRLVTAMFLHYGVIHLLLNMYALWILG---RTLEASLGPARFLALYLV-AGLGG- 189
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
+ + + TA G S +FG L V D+ L + +
Sbjct: 190 --------NVAAYLISAPNAATA-GASTAIFGLFAALFVVGRRMGRDVSQVLPILVI--- 237
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
+L+FT + VP S GHL G+ VG +A+
Sbjct: 238 --NLVFT-LTVPGISIPGHLGGLAVGGLMAF 265
>gi|399028335|ref|ZP_10729595.1| putative membrane protein [Flavobacterium sp. CF136]
gi|398074069|gb|EJL65225.1| putative membrane protein [Flavobacterium sp. CF136]
Length = 212
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
G R+++S F H ++HL FNM LW V++ LG+ ++ +LV + L
Sbjct: 39 GEQIRMLSSGFLHADIMHLAFNMLTLWFFAPTVIDYLGN----------FSFILVYVGSL 88
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
+ + +L + Y AVG S V G + + QP L +FG + +P
Sbjct: 89 IFGSLLTMLFHKNDYSY----RAVGASGAVTGVLYSAILLQPDMMLGIFGIIPIP 139
>gi|358012853|ref|ZP_09144663.1| hypothetical protein AP8-3_15163 [Acinetobacter sp. P8-3-8]
Length = 270
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 29/169 (17%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVL----VVLSGLL 107
+R+ +S F H +LHL+ NM W+L V + + G AYYL ++ +LSG L
Sbjct: 67 YRLFSSMFFHFGILHLMMNM---WALFVFGNVAEQTFGRAYYLGLYIIAGLMGSLLSGYL 123
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGW---MTILSVKQPS-------SKLDLFGF 157
+ + L+Q F ++ V+A G S V G + +LS+ P K L
Sbjct: 124 DIRNSYALLQSFDVKLLPHVSA-GASGAVMGLGGALAMLSLFPPVPNQRFILDKKSLLSI 182
Query: 158 LSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG--YAIAWGLIHGMN 204
L++ ++F F + I + H+ G+++G A+AW + +N
Sbjct: 183 LAINLAFGFFATGINNA---------AHIGGMVMGAILALAWYIAQRVN 222
>gi|407796208|ref|ZP_11143164.1| S54 family peptidase [Salimicrobium sp. MJ3]
gi|407019562|gb|EKE32278.1| S54 family peptidase [Salimicrobium sp. MJ3]
Length = 507
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 25/154 (16%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSG 105
++G WR+I+S F HI VLHL+ NM AL+ LG VEQ+ G+ ++T++ L+G
Sbjct: 222 IEGEWWRLISSMFLHIGVLHLLMNMLALFYLGTAVEQI----YGS---FRFTMI-YFLAG 273
Query: 106 LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTIL---SVKQPSSKLDLFGFLSLPI 162
+L YF A G S +FG L + + PS G+ +L I
Sbjct: 274 ILGSAASF---------YFNTSVAAGASGAIFGLFGALLYFAWRYPSLFFRTMGW-NLII 323
Query: 163 SFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
A +++F I VPQ GH+ G+I G+ A
Sbjct: 324 LVAI--NIVF-GITVPQVDNSGHMGGLIGGFLAA 354
>gi|156042502|ref|XP_001587808.1| hypothetical protein SS1G_11048 [Sclerotinia sclerotiorum 1980]
gi|154695435|gb|EDN95173.1| hypothetical protein SS1G_11048 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 269
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 78/189 (41%), Gaps = 17/189 (8%)
Query: 15 TSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHH-WRIITSAFSHISVLHLVFNMSA 73
T CI+ I ++W + G Y + +R T H+ +H++ N+ A
Sbjct: 24 TRCIVAIIFILWLVSLQSAWDLQKWGGLYPNEIGLQTMYRTNTFPLIHMGFIHMIMNIIA 83
Query: 74 LWSL--GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVG 131
L L + G + + + + ++ + GI+H+ +G
Sbjct: 84 LTPLLERFEAEYGTLTTLALFMGPLSTIPALIYTFVERGIFHM-----------NTGVMG 132
Query: 132 YSCVVFGWMTILSVKQPSSKLD-LFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGII 190
S VF + + ++K + + + G + +P P +F S +VP SFLGHL G++
Sbjct: 133 ASIWVFTLLAMEAIKTYKTNPNFVLGTVQIPTWTTPIILTLFISFLVPHTSFLGHLCGLV 192
Query: 191 VGYAIAWGL 199
GY WGL
Sbjct: 193 FGY--GWGL 199
>gi|117922538|ref|YP_871730.1| rhomboid family protein [Shewanella sp. ANA-3]
gi|117614870|gb|ABK50324.1| Rhomboid family protein [Shewanella sp. ANA-3]
Length = 280
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 33/196 (16%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDG----HHWRIITSAFSHISVLHLV 68
P T I G+C +I+ + G + LSY AV WR+ T + H S +H++
Sbjct: 98 PVTLIIFGLCVLIYAAMNLGFGGPVYETLSYFGAVPDTSISQFWRVFTPSLMHFSAMHII 157
Query: 69 FNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF-KLEYFR 125
FN+ W LG + ++G T L++L LLV G ++Q + F
Sbjct: 158 FNLLWWWYLGGKIETRIG------------TAPLLIL--LLVAGTLPNVVQYYVSGPNFG 203
Query: 126 RVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE----SLIFTSIIVPQAS 181
++ V Y+ + W ++ +++P++ + LP S+ F L FT + +
Sbjct: 204 GLSGVVYAVAGYTW--VMGIRKPAAG------IGLPPSYMGFMLIWLMLGFTDFLGVSVA 255
Query: 182 FLGHLSGIIVGYAIAW 197
H+ G+++G A W
Sbjct: 256 NGAHIGGLLIGLAQGW 271
>gi|336121537|ref|YP_004576312.1| Rhomboid family protein [Methanothermococcus okinawensis IH1]
gi|334856058|gb|AEH06534.1| Rhomboid family protein [Methanothermococcus okinawensis IH1]
Length = 191
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 22/186 (11%)
Query: 15 TSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSAL 74
T IIG+C V++ + N + + + + A++ W+ ITS F H S HL NM L
Sbjct: 4 TITIIGVCVVVFLFELFSNSLVNLLSFNPQYALN-MPWQFITSIFIHGSFTHLFLNMFVL 62
Query: 75 WSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYS 133
+ G+ +E+ +G A +L+ + +SG + I +LL +Y + AVG S
Sbjct: 63 FFFGLRLEKW----IGGANFLK----IFFISG-IAGNIAYLLYSYSTNQY---IPAVGAS 110
Query: 134 CVVFGWMTILSVKQPSSKLDLFGFLSLPIS-------FAPFESLIFTSIIVPQASFLGHL 186
+ G + L++ P+ ++ +F F +PI FA FE L I+P HL
Sbjct: 111 GAISGIIGALTILDPNMEIMIFPF-PIPIKLKYATILFAGFEILCLIFSIMPTIGHAAHL 169
Query: 187 SGIIVG 192
G+ G
Sbjct: 170 GGLFTG 175
>gi|375129605|ref|YP_004991702.1| peptidase, S54 (rhomboid) family [Vibrio furnissii NCTC 11218]
gi|315178776|gb|ADT85690.1| peptidase, S54 (rhomboid) family, hypothetical [Vibrio furnissii
NCTC 11218]
Length = 281
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 85/192 (44%), Gaps = 38/192 (19%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T ++ +C+VI F + +G G + A G W R T A H SV+H+VF
Sbjct: 98 PLTLLVMAVCAVI-FVLAYVGLGNQIFGALHFPAHAGQQWQLWRWFTHALLHFSVIHIVF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
N+ W LG GD+ LG+ LQ L+ LSG G Y + + F +
Sbjct: 157 NLLWWWQLG-----GDIEKRLGSGKLLQVFLISAALSG---AGQYWV-----EGANFGGL 203
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKL----DLFGFLSLPISFA---PFESLIFTSIIVPQA 180
+ V Y+ V + WM L V+ P L L GF+ + + PF ++ T+
Sbjct: 204 SGVVYALVGYLWM--LGVRAPHVGLGMPKPLIGFMLVWLVLGYVQPFMAIANTA------ 255
Query: 181 SFLGHLSGIIVG 192
HL+G++ G
Sbjct: 256 ----HLAGLVTG 263
>gi|406576099|ref|ZP_11051770.1| rhomboid family protein [Janibacter hoylei PVAS-1]
gi|404554503|gb|EKA60034.1| rhomboid family protein [Janibacter hoylei PVAS-1]
Length = 297
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 20/140 (14%)
Query: 2 GRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSH 61
GRP+ T II IC+V+W + V + WR+ITSAF+H
Sbjct: 77 GRPML--------TMGIIAICAVVWVAELLSPRVFQEVAFAPALGT-AEPWRLITSAFAH 127
Query: 62 I--SVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR 118
+H++FNM ALW + G +E++ LG A YL LV L+G + ++ +
Sbjct: 128 SPNQPMHILFNMLALWLVGGYLERM----LGWARYLAVYLV-AALAGSVTWLLFQPVDPY 182
Query: 119 FKLEYFRRVTAVGYSCVVFG 138
Y V VG S VFG
Sbjct: 183 DPGAY---VPVVGASGAVFG 199
>gi|126172311|ref|YP_001048460.1| rhomboid family protein [Shewanella baltica OS155]
gi|373947473|ref|ZP_09607434.1| Rhomboid protease [Shewanella baltica OS183]
gi|386326678|ref|YP_006022795.1| rhomboid protease [Shewanella baltica BA175]
gi|386338988|ref|YP_006035354.1| rhomboid protease [Shewanella baltica OS117]
gi|125995516|gb|ABN59591.1| Rhomboid family protein [Shewanella baltica OS155]
gi|333820823|gb|AEG13489.1| Rhomboid protease [Shewanella baltica BA175]
gi|334861389|gb|AEH11860.1| Rhomboid protease [Shewanella baltica OS117]
gi|373884073|gb|EHQ12965.1| Rhomboid protease [Shewanella baltica OS183]
Length = 281
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHH----WRIITSAFSHISVLHLV 68
P T + +C +I+ + ++ LSY AV WR+ T + H S +H++
Sbjct: 98 PVTLIVFAVCVLIFAAMNLGFANQTYAALSYFGAVPSSEFSQFWRVFTPSLLHFSAMHVI 157
Query: 69 FNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF-KLEYFR 125
FN+ W LG + ++G T L++L L V G +IQ + F
Sbjct: 158 FNLLWWWYLGGKIETRIG------------TAPLLIL--LFVAGTLPNVIQYYVGGPNFG 203
Query: 126 RVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE----SLIFTSIIVPQAS 181
++ V Y+ V + W ++ +++P++ +D P S+ F +L FT I+ +
Sbjct: 204 GLSGVVYAVVGYTW--VMGIRKPAAGID------FPPSYMAFMMIWLALGFTDILGVAVA 255
Query: 182 FLGHLSGIIVGYA 194
H+ G+++G A
Sbjct: 256 NGAHIGGLLIGLA 268
>gi|434384588|ref|YP_007095199.1| putative membrane protein [Chamaesiphon minutus PCC 6605]
gi|428015578|gb|AFY91672.1| putative membrane protein [Chamaesiphon minutus PCC 6605]
Length = 528
Score = 43.5 bits (101), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 17/192 (8%)
Query: 13 PATSCIIGI-----CSVIWFYIQKKNIGYSHV---GLSYETAVDGHHWRIITSAFSHISV 64
P T+ II I C+ +++ + + ++ + GLS V G WRIIT+ F H+ +
Sbjct: 327 PVTNFIIAINVLIFCAELFWQSKIGDKDFTFIPWGGLSAPLVVGGQWWRIITANFLHMGI 386
Query: 65 LHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYF 124
LHL NM AL LG + + LGT YL LV +GL + + + ++
Sbjct: 387 LHLGMNMLALLYLG---KFVEYRLGTWKYLFAYLV----AGLGSMAVITYIDLKWMTTPH 439
Query: 125 RRVTAVGYSCVVFGWMTILSVKQ-PSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
V A G + G M + ++ +K+ G + F+ L+F + S +
Sbjct: 440 ITVGASGAIMGMLGAMGAIHLRGWRQAKVAAAGRQFQAVLFSVGFQLVF-DLTNGHTSIV 498
Query: 184 GHLSGIIVGYAI 195
GH SG+I+G+ I
Sbjct: 499 GHFSGLIIGFLI 510
>gi|344999051|ref|YP_004801905.1| Rhomboid family protein [Streptomyces sp. SirexAA-E]
gi|344314677|gb|AEN09365.1| Rhomboid family protein [Streptomyces sp. SirexAA-E]
Length = 304
Score = 43.5 bits (101), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 56/120 (46%), Gaps = 28/120 (23%)
Query: 26 WFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHI------SVLHLVFNMSALWSLG- 78
++Y GY G++ DG +R++T AF H+ V+HLVFNM ALW+LG
Sbjct: 111 YYYEGGTYPGYELTGVA-----DGEWYRLLTGAFLHLPPDTSFGVMHLVFNMFALWNLGR 165
Query: 79 VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFG 138
VVE LG A YL L+ V +LV + TAVG S VFG
Sbjct: 166 VVEGQ----LGRARYLALYLLSAVGGSVLVYLVSP------------ETTAVGASGAVFG 209
>gi|449134320|ref|ZP_21769821.1| glpG protein [Rhodopirellula europaea 6C]
gi|448886950|gb|EMB17338.1| glpG protein [Rhodopirellula europaea 6C]
Length = 340
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 28/171 (16%)
Query: 34 IGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAY 92
I Y + + G WRIIT A H S +HLVFNM ++ L GV+E+ L ++
Sbjct: 183 IEYQKSNDPWVSIKKGEVWRIITPAVLHGSPMHLVFNMMWVYMLGGVIER-----LHGSW 237
Query: 93 YLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKL 152
+L + + + +SG++V +++ + LE + A G + +FG++ I QP
Sbjct: 238 FLVFLMTITHVSGMIV----QIVLPDW-LESPMAIGASGAALGIFGFIWIRPRFQP---- 288
Query: 153 DLFGFLSLPISFAPFESLIFTSIIVPQASFL-------GHLSGIIVGYAIA 196
+ P+ PF + V + L H+ G++ G AIA
Sbjct: 289 ------TYPVGIPPFNVYLILGFTVACMTPLIQGIANGAHVGGLVAGMAIA 333
>gi|218290248|ref|ZP_03494402.1| Rhomboid family protein [Alicyclobacillus acidocaldarius LAA1]
gi|218239723|gb|EED06914.1| Rhomboid family protein [Alicyclobacillus acidocaldarius LAA1]
Length = 233
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 21 ICSVIWFYIQKKNIGYSHVGLS-----YETAVDGHHW-RIITSAFSHISVLHLVFNMSAL 74
+ +V+W+ I + G S GL Y V+ W R++++ F H+S+ H++ NM +L
Sbjct: 30 LVTVLWYLIVETITGRSTFGLLRAGALYPPLVEHGQWFRVLSTMFVHVSLWHILVNMISL 89
Query: 75 WSLGVVEQ 82
W+L VVEQ
Sbjct: 90 WTLFVVEQ 97
>gi|312884405|ref|ZP_07744110.1| thiosulfate sulfurtransferase GlpG [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367927|gb|EFP95474.1| thiosulfate sulfurtransferase GlpG [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 265
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRI---ITSAFSHISVLHLVF 69
P T I+ +C V+ F +Q+ N+ + L + +VDG W+I + A H S LH+ F
Sbjct: 87 PVTLTIMSLCVVV-FLLQQINLNHFAFNLLHFPSVDGEQWQIWRWFSHALLHFSFLHITF 145
Query: 70 NMSALWSLG--VVEQLG 84
N+ W LG + ++LG
Sbjct: 146 NLLWWWQLGSDIEQKLG 162
>gi|420393523|ref|ZP_14892768.1| rhomboid family protein [Escherichia coli EPEC C342-62]
gi|391310364|gb|EIQ68019.1| rhomboid family protein [Escherichia coli EPEC C342-62]
Length = 274
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 82 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 140 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 188 QKFSGPWFGGLSGVAYALMGYVWLR--GERDPQS 219
>gi|218437706|ref|YP_002376035.1| rhomboid family protein [Cyanothece sp. PCC 7424]
gi|218170434|gb|ACK69167.1| Rhomboid family protein [Cyanothece sp. PCC 7424]
Length = 515
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 17/140 (12%)
Query: 11 EKPATSCIIGICSVIWFYIQKK-------NIGYSHVGLSYETAVDGHHWRIITSAFSHIS 63
+KP + + + ++I+F ++ K NI Y+ GL E +G WR+IT+ F H
Sbjct: 324 KKPYITIFLILINLIYFGLEIKQGGSEDINILYNLGGLVPEEVENGQWWRLITANFLHYG 383
Query: 64 VLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEY 123
LHL NM L+ LG ++ LG Y L+ ++SG+ + +Y LL KLE
Sbjct: 384 WLHLSMNMMGLYFLG---HFVELTLGRLRY----LIAYLVSGIGSMSLYTLL--SLKLED 434
Query: 124 FRRVTAVGYSCVVFGWMTIL 143
++ VG S + G + +L
Sbjct: 435 SGQI-LVGASAAIMGLVGVL 453
>gi|350529682|ref|ZP_08908623.1| peptidase [Vibrio rotiferianus DAT722]
Length = 280
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T I+ +C+VI+F +Q G L + A +G W R ++ A H SV H+VF
Sbjct: 98 PVTLLIMAVCTVIYF-LQMFGFGDGVFALLHFPAFEGQQWQLWRWVSHALLHFSVTHIVF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ L + LQ + LSG
Sbjct: 157 NLLWWWQLG-----GDIERRLSSGKLLQIFFISAALSG 189
>gi|28899725|ref|NP_799330.1| GlpG protein [Vibrio parahaemolyticus RIMD 2210633]
gi|153839843|ref|ZP_01992510.1| GlpG protein [Vibrio parahaemolyticus AQ3810]
gi|260361676|ref|ZP_05774703.1| rhomboid protease GlpG [Vibrio parahaemolyticus K5030]
gi|260897189|ref|ZP_05905685.1| rhomboid protease GlpG (Intramembrane serineprotease) [Vibrio
parahaemolyticus Peru-466]
gi|308126055|ref|ZP_05907537.2| rhomboid protease GlpG [Vibrio parahaemolyticus AQ4037]
gi|28807977|dbj|BAC61214.1| GlpG protein [Vibrio parahaemolyticus RIMD 2210633]
gi|149746638|gb|EDM57626.1| GlpG protein [Vibrio parahaemolyticus AQ3810]
gi|308089318|gb|EFO39013.1| rhomboid protease GlpG (Intramembrane serineprotease) [Vibrio
parahaemolyticus Peru-466]
gi|308107494|gb|EFO45034.1| rhomboid protease GlpG [Vibrio parahaemolyticus AQ4037]
gi|308111293|gb|EFO48833.1| rhomboid protease GlpG [Vibrio parahaemolyticus K5030]
Length = 280
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 38/196 (19%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T I+ +C+VI + +Q G L + A +G W R ++ A H SV H++F
Sbjct: 98 PVTLLIMTVCAVI-YGLQMLGFGNGVFALLHFPAFEGQQWQLWRWVSHALLHFSVTHIIF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
N+ W LG GD+ LG+ LQ +V LSG +F +E
Sbjct: 157 NLLWWWQLG-----GDIERRLGSGKLLQIFVVSAALSG----------AGQFYVEGANFG 201
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDL------FGFLSLPISF-APFESLIFTSIIVPQA 180
G + G++ +L + P L L F + L + F PF ++ T+
Sbjct: 202 GLSGVVYALLGYLWVLGYRLPHLGLTLPKSIIGFMLVWLVLGFVQPFMAIANTA------ 255
Query: 181 SFLGHLSGIIVGYAIA 196
HL+G++ G AIA
Sbjct: 256 ----HLAGLLAGMAIA 267
>gi|354603563|ref|ZP_09021561.1| hypothetical protein HMPREF9450_00476 [Alistipes indistinctus YIT
12060]
gi|353348943|gb|EHB93210.1| hypothetical protein HMPREF9450_00476 [Alistipes indistinctus YIT
12060]
Length = 204
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 24/154 (15%)
Query: 43 YETAVDGHHWRIITSAFSHISVLHLVFNMSALWS--------LGVVEQLGDVGLGTAYYL 94
Y D WR+IT F H +HL NM L S G +Q+G V G +YL
Sbjct: 31 YRVVHDRQWWRVITHGFVHGDYVHLAVNMFVLLSFGQFIERFFGAYQQIGLVSNGDLWYL 90
Query: 95 QYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
L+ G++ +Y L+ R Y + S VVF + P SK+ L
Sbjct: 91 -----LLYFGGMVAASVYDLIRYRNNPRYASIGASGAVSAVVFASIFF----NPWSKIYL 141
Query: 155 FGFLSLPISFAPFESLIFTSIIVPQASFLGHLSG 188
G + +P +IF + + +S++G G
Sbjct: 142 LGVIPIP-------GIIFGLLYIGYSSYMGRHQG 168
>gi|269961506|ref|ZP_06175869.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|424044423|ref|ZP_17782046.1| rhomboid protease glpG [Vibrio cholerae HENC-03]
gi|269833735|gb|EEZ87831.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|408888004|gb|EKM26468.1| rhomboid protease glpG [Vibrio cholerae HENC-03]
Length = 280
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T I+ +C+VI+F +Q G L + A +G W R ++ A H SV H+VF
Sbjct: 98 PVTLLIMAVCTVIYF-LQMFGFGDGVFALLHFPAFEGQQWQLWRWVSHALLHFSVTHIVF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ L + LQ + LSG
Sbjct: 157 NLLWWWQLG-----GDIERRLSSGKLLQIFFISAALSG 189
>gi|302543949|ref|ZP_07296291.1| rhomboid family protein [Streptomyces hygroscopicus ATCC 53653]
gi|302461567|gb|EFL24660.1| rhomboid family protein [Streptomyces himastatinicus ATCC 53653]
Length = 292
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 25/165 (15%)
Query: 7 YEIMEKPATSCIIGICSVIWFYI----QKKNIGYSHVGLSYETA-------VDGHHWRII 55
Y + T +IG+ +W + + G+ VG +Y+ +G +R++
Sbjct: 73 YTADPRLVTKILIGLNIAVWLAVLGTGDRLVDGFDLVGRAYDPGTADIVGVAEGQWYRLL 132
Query: 56 TSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLL 115
T+AF H LH+ FNM +LW +G + LG A Y L L +LSGL + +LL
Sbjct: 133 TAAFLHQQPLHIAFNMLSLWWIGAPL---EAALGRARY----LTLYLLSGLGGSALSYLL 185
Query: 116 IQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSL 160
+ + ++G S VFG + +V D+ ++L
Sbjct: 186 AAQNQ-------PSLGASGAVFGLLGATAVLMRRLNYDMRPVIAL 223
>gi|308094753|ref|ZP_05891717.2| rhomboid protease GlpG [Vibrio parahaemolyticus AN-5034]
gi|308092838|gb|EFO42533.1| rhomboid protease GlpG [Vibrio parahaemolyticus AN-5034]
Length = 269
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 38/196 (19%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T I+ +C+VI + +Q G L + A +G W R ++ A H SV H++F
Sbjct: 87 PVTLLIMTVCAVI-YGLQMLGFGNGVFALLHFPAFEGQQWQLWRWVSHALLHFSVTHIIF 145
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
N+ W LG GD+ LG+ LQ +V LSG +F +E
Sbjct: 146 NLLWWWQLG-----GDIERRLGSGKLLQIFVVSAALSG----------AGQFYVEGANFG 190
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDL------FGFLSLPISF-APFESLIFTSIIVPQA 180
G + G++ +L + P L L F + L + F PF ++ T+
Sbjct: 191 GLSGVVYALLGYLWVLGYRLPHLGLTLPKSIIGFMLVWLVLGFVQPFMAIANTA------ 244
Query: 181 SFLGHLSGIIVGYAIA 196
HL+G++ G AIA
Sbjct: 245 ----HLAGLLAGMAIA 256
>gi|146313465|ref|YP_001178539.1| intramembrane serine protease GlpG [Enterobacter sp. 638]
gi|172046003|sp|A4WFK8.1|GLPG_ENT38 RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|145320341|gb|ABP62488.1| Rhomboid family protein [Enterobacter sp. 638]
Length = 276
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 21/153 (13%)
Query: 4 PLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLS----YETAVDGHHWRIITSAF 59
P F + E+ ++ + + I +I +G V ++ Y AV WR T A
Sbjct: 84 PFFATVRERAGPFTLLLMAACILVFIIMNVVGDQRVMIALAWPYGPAVQYDVWRYFTHAL 143
Query: 60 SHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQ 117
H SVLH++FN+ W LG V ++LG L +V+ ++S LL + H
Sbjct: 144 MHFSVLHILFNLLWWWYLGGAVEKRLGSGKL---------IVITIISALLSGYVQH---- 190
Query: 118 RFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
+F +F ++ V Y+ + + W+ + P S
Sbjct: 191 KFSGPWFGGLSGVVYALMGYAWLR--GERDPES 221
>gi|419116946|ref|ZP_13661956.1| rhomboid family protein [Escherichia coli DEC5A]
gi|377958005|gb|EHV21529.1| rhomboid family protein [Escherichia coli DEC5A]
Length = 276
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ A+ WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPALKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|417320733|ref|ZP_12107275.1| GlpG protein [Vibrio parahaemolyticus 10329]
gi|328472448|gb|EGF43314.1| GlpG protein [Vibrio parahaemolyticus 10329]
Length = 280
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 38/196 (19%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T I+ +C+VI + +Q G L + A +G W R ++ A H SV H++F
Sbjct: 98 PVTLLIMTVCAVI-YGLQMLGFGNGVFALLHFPAFEGQQWQLWRWVSHALLHFSVTHIIF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
N+ W LG GD+ LG+ LQ +V LSG +F +E
Sbjct: 157 NLLWWWQLG-----GDIERRLGSGKLLQIFVVSAALSG----------AGQFYVEGANFG 201
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDL------FGFLSLPISF-APFESLIFTSIIVPQA 180
G + G++ +L + P L L F + L + F PF ++ T+
Sbjct: 202 GLSGVVYALLGYLWVLGYRLPHLGLTLPKSIIGFMLVWLVLGFVQPFMAIANTA------ 255
Query: 181 SFLGHLSGIIVGYAIA 196
HL+G++ G AIA
Sbjct: 256 ----HLAGLLAGMAIA 267
>gi|256374174|ref|YP_003097834.1| rhomboid family protein [Actinosynnema mirum DSM 43827]
gi|255918477|gb|ACU33988.1| Rhomboid family protein [Actinosynnema mirum DSM 43827]
Length = 298
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
G WR++TS F H+ V H+ NM++L+ LG L V LG A +L L L +L G
Sbjct: 131 GEWWRLVTSGFLHLGVTHIGLNMASLYILG--RDLEPV-LGRARFLAVYL-LSLLGGSAS 186
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE 168
+ ++ ++ +TA G S ++G M L V +L+ L++
Sbjct: 187 VYLFEEVVS---------LTA-GASGAIYGLMGSLLVVLLRRRLNATPVLAI------IA 230
Query: 169 SLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
+F S +P S LGHL GI VG A+ L++
Sbjct: 231 INVFLSFSLPNISILGHLGGIAVGAAVTAALVY 263
>gi|15803931|ref|NP_289967.1| intramembrane serine protease GlpG [Escherichia coli O157:H7 str.
EDL933]
gi|15833521|ref|NP_312294.1| intramembrane serine protease GlpG [Escherichia coli O157:H7 str.
Sakai]
gi|74314024|ref|YP_312443.1| intramembrane serine protease GlpG [Shigella sonnei Ss046]
gi|82778761|ref|YP_405110.1| intramembrane serine protease GlpG [Shigella dysenteriae Sd197]
gi|168753180|ref|ZP_02778187.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4401]
gi|168779511|ref|ZP_02804518.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4076]
gi|168785232|ref|ZP_02810239.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC869]
gi|168797198|ref|ZP_02822205.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC508]
gi|187775654|ref|ZP_02797687.2| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4196]
gi|188024498|ref|ZP_02772117.2| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4113]
gi|189402769|ref|ZP_02790782.2| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4486]
gi|208806161|ref|ZP_03248498.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4206]
gi|208814554|ref|ZP_03255883.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4045]
gi|209397686|ref|YP_002272861.1| intramembrane serine protease GlpG [Escherichia coli O157:H7 str.
EC4115]
gi|254795341|ref|YP_003080178.1| intramembrane serine protease GlpG [Escherichia coli O157:H7 str.
TW14359]
gi|291284762|ref|YP_003501580.1| Rhomboid protease glpG [Escherichia coli O55:H7 str. CB9615]
gi|383180592|ref|YP_005458597.1| intramembrane serine protease GlpG [Shigella sonnei 53G]
gi|387508793|ref|YP_006161049.1| intramembrane serine protease GlpG [Escherichia coli O55:H7 str.
RM12579]
gi|387884573|ref|YP_006314875.1| intramembrane serine protease GlpG [Escherichia coli Xuzhou21]
gi|414578204|ref|ZP_11435375.1| rhomboid protease glpG [Shigella sonnei 3233-85]
gi|415851313|ref|ZP_11528062.1| rhomboid family protein [Shigella sonnei 53G]
gi|416315950|ref|ZP_11659763.1| intramembrane serine protease GlpG [Escherichia coli O157:H7 str.
1044]
gi|416320207|ref|ZP_11662759.1| intramembrane serine protease GlpG [Escherichia coli O157:H7 str.
EC1212]
gi|416326547|ref|ZP_11666756.1| intramembrane serine protease GlpG [Escherichia coli O157:H7 str.
1125]
gi|416801197|ref|ZP_11885370.1| intramembrane serine protease GlpG [Escherichia coli O157:H- str. H
2687]
gi|416812151|ref|ZP_11890320.1| intramembrane serine protease GlpG [Escherichia coli O55:H7 str.
3256-97]
gi|416822402|ref|ZP_11894838.1| intramembrane serine protease GlpG [Escherichia coli O55:H7 str.
USDA 5905]
gi|417630809|ref|ZP_12281043.1| rhomboid family protein [Escherichia coli STEC_MHI813]
gi|418268892|ref|ZP_12887561.1| rhomboid family protein [Shigella sonnei str. Moseley]
gi|419047562|ref|ZP_13594494.1| rhomboid family protein [Escherichia coli DEC3A]
gi|419053175|ref|ZP_13600042.1| rhomboid family protein [Escherichia coli DEC3B]
gi|419059128|ref|ZP_13605929.1| rhomboid family protein [Escherichia coli DEC3C]
gi|419064675|ref|ZP_13611395.1| rhomboid family protein [Escherichia coli DEC3D]
gi|419082606|ref|ZP_13628051.1| rhomboid family protein [Escherichia coli DEC4A]
gi|419094395|ref|ZP_13639674.1| rhomboid family protein [Escherichia coli DEC4C]
gi|419106023|ref|ZP_13651146.1| rhomboid family protein [Escherichia coli DEC4E]
gi|419111404|ref|ZP_13656455.1| rhomboid family protein [Escherichia coli DEC4F]
gi|419128027|ref|ZP_13672901.1| rhomboid family protein [Escherichia coli DEC5C]
gi|419133513|ref|ZP_13678340.1| rhomboid family protein [Escherichia coli DEC5D]
gi|420271930|ref|ZP_14774281.1| rhomboid protease glpG [Escherichia coli PA22]
gi|420277442|ref|ZP_14779722.1| rhomboid protease glpG [Escherichia coli PA40]
gi|420288793|ref|ZP_14790975.1| rhomboid protease glpG [Escherichia coli TW10246]
gi|420294553|ref|ZP_14796664.1| rhomboid protease glpG [Escherichia coli TW11039]
gi|420306284|ref|ZP_14808272.1| rhomboid protease glpG [Escherichia coli TW10119]
gi|420311607|ref|ZP_14813535.1| rhomboid protease glpG [Escherichia coli EC1738]
gi|420317335|ref|ZP_14819207.1| rhomboid protease glpG [Escherichia coli EC1734]
gi|420360773|ref|ZP_14861727.1| rhomboid protease glpG [Shigella sonnei 3226-85]
gi|420365562|ref|ZP_14866426.1| rhomboid family protein [Shigella sonnei 4822-66]
gi|421814353|ref|ZP_16250057.1| rhomboid family protease GlpG [Escherichia coli 8.0416]
gi|421826245|ref|ZP_16261598.1| rhomboid protease glpG [Escherichia coli FRIK920]
gi|421832994|ref|ZP_16268274.1| rhomboid protease glpG [Escherichia coli PA7]
gi|422833836|ref|ZP_16881901.1| rhomboid protease glpG [Escherichia coli E101]
gi|423727370|ref|ZP_17701275.1| rhomboid protease glpG [Escherichia coli PA31]
gi|424079568|ref|ZP_17816532.1| rhomboid protease glpG [Escherichia coli FDA505]
gi|424086026|ref|ZP_17822509.1| rhomboid protease glpG [Escherichia coli FDA517]
gi|424092426|ref|ZP_17828352.1| rhomboid protease glpG [Escherichia coli FRIK1996]
gi|424105310|ref|ZP_17840049.1| rhomboid protease glpG [Escherichia coli FRIK1990]
gi|424111956|ref|ZP_17846182.1| rhomboid protease glpG [Escherichia coli 93-001]
gi|424117897|ref|ZP_17851726.1| rhomboid protease glpG [Escherichia coli PA3]
gi|424124083|ref|ZP_17857386.1| rhomboid protease glpG [Escherichia coli PA5]
gi|424130232|ref|ZP_17863131.1| rhomboid protease glpG [Escherichia coli PA9]
gi|424136554|ref|ZP_17868998.1| rhomboid protease glpG [Escherichia coli PA10]
gi|424143107|ref|ZP_17874970.1| rhomboid protease glpG [Escherichia coli PA14]
gi|424149509|ref|ZP_17880876.1| rhomboid protease glpG [Escherichia coli PA15]
gi|424155357|ref|ZP_17886285.1| rhomboid protease glpG [Escherichia coli PA24]
gi|424255344|ref|ZP_17891833.1| rhomboid protease glpG [Escherichia coli PA25]
gi|424333832|ref|ZP_17897741.1| rhomboid protease glpG [Escherichia coli PA28]
gi|424451795|ref|ZP_17903460.1| rhomboid protease glpG [Escherichia coli PA32]
gi|424457983|ref|ZP_17909089.1| rhomboid protease glpG [Escherichia coli PA33]
gi|424464448|ref|ZP_17914814.1| rhomboid protease glpG [Escherichia coli PA39]
gi|424470746|ref|ZP_17920553.1| rhomboid protease glpG [Escherichia coli PA41]
gi|424477249|ref|ZP_17926559.1| rhomboid protease glpG [Escherichia coli PA42]
gi|424483013|ref|ZP_17931985.1| rhomboid protease glpG [Escherichia coli TW07945]
gi|424489195|ref|ZP_17937737.1| rhomboid protease glpG [Escherichia coli TW09098]
gi|424495866|ref|ZP_17943467.1| rhomboid protease glpG [Escherichia coli TW09195]
gi|424502545|ref|ZP_17949427.1| rhomboid protease glpG [Escherichia coli EC4203]
gi|424508799|ref|ZP_17955176.1| rhomboid protease glpG [Escherichia coli EC4196]
gi|424516153|ref|ZP_17960780.1| rhomboid protease glpG [Escherichia coli TW14313]
gi|424522349|ref|ZP_17966457.1| rhomboid protease glpG [Escherichia coli TW14301]
gi|424528227|ref|ZP_17971935.1| rhomboid protease glpG [Escherichia coli EC4421]
gi|424534374|ref|ZP_17977714.1| rhomboid protease glpG [Escherichia coli EC4422]
gi|424540427|ref|ZP_17983363.1| rhomboid protease glpG [Escherichia coli EC4013]
gi|424546559|ref|ZP_17988922.1| rhomboid protease glpG [Escherichia coli EC4402]
gi|424558967|ref|ZP_18000369.1| rhomboid protease glpG [Escherichia coli EC4436]
gi|424565305|ref|ZP_18006301.1| rhomboid protease glpG [Escherichia coli EC4437]
gi|424571436|ref|ZP_18011976.1| rhomboid protease glpG [Escherichia coli EC4448]
gi|424577590|ref|ZP_18017635.1| rhomboid protease glpG [Escherichia coli EC1845]
gi|424583409|ref|ZP_18023048.1| rhomboid protease glpG [Escherichia coli EC1863]
gi|425100083|ref|ZP_18502807.1| rhomboid family protease GlpG [Escherichia coli 3.4870]
gi|425106181|ref|ZP_18508490.1| rhomboid family protease GlpG [Escherichia coli 5.2239]
gi|425112191|ref|ZP_18514104.1| rhomboid family protease GlpG [Escherichia coli 6.0172]
gi|425128116|ref|ZP_18529276.1| rhomboid family protease GlpG [Escherichia coli 8.0586]
gi|425133859|ref|ZP_18534701.1| rhomboid family protease GlpG [Escherichia coli 8.2524]
gi|425140435|ref|ZP_18540808.1| rhomboid family protease GlpG [Escherichia coli 10.0833]
gi|425146142|ref|ZP_18546127.1| rhomboid family protease GlpG [Escherichia coli 10.0869]
gi|425152262|ref|ZP_18551868.1| rhomboid family protease GlpG [Escherichia coli 88.0221]
gi|425164485|ref|ZP_18563364.1| rhomboid protease glpG [Escherichia coli FDA506]
gi|425170230|ref|ZP_18568695.1| rhomboid protease glpG [Escherichia coli FDA507]
gi|425176289|ref|ZP_18574400.1| rhomboid protease glpG [Escherichia coli FDA504]
gi|425182334|ref|ZP_18580020.1| rhomboid protease glpG [Escherichia coli FRIK1999]
gi|425188599|ref|ZP_18585863.1| rhomboid protease glpG [Escherichia coli FRIK1997]
gi|425201843|ref|ZP_18598042.1| rhomboid protease glpG [Escherichia coli NE037]
gi|425208226|ref|ZP_18604014.1| rhomboid protease glpG [Escherichia coli FRIK2001]
gi|425213981|ref|ZP_18609373.1| rhomboid family protease GlpG [Escherichia coli PA4]
gi|425220103|ref|ZP_18615057.1| rhomboid protease glpG [Escherichia coli PA23]
gi|425226652|ref|ZP_18621110.1| rhomboid protease glpG [Escherichia coli PA49]
gi|425232906|ref|ZP_18626938.1| rhomboid protease glpG [Escherichia coli PA45]
gi|425238831|ref|ZP_18632542.1| rhomboid protease glpG [Escherichia coli TT12B]
gi|425245069|ref|ZP_18638367.1| rhomboid protease glpG [Escherichia coli MA6]
gi|425251255|ref|ZP_18644191.1| rhomboid protease glpG [Escherichia coli 5905]
gi|425257042|ref|ZP_18649546.1| rhomboid protease glpG [Escherichia coli CB7326]
gi|425263296|ref|ZP_18655289.1| rhomboid protease glpG [Escherichia coli EC96038]
gi|425269295|ref|ZP_18660918.1| rhomboid protease glpG [Escherichia coli 5412]
gi|425296747|ref|ZP_18686907.1| rhomboid protease glpG [Escherichia coli PA38]
gi|425313439|ref|ZP_18702610.1| rhomboid protease glpG [Escherichia coli EC1735]
gi|425319416|ref|ZP_18708196.1| rhomboid protease glpG [Escherichia coli EC1736]
gi|425325518|ref|ZP_18713865.1| rhomboid protease glpG [Escherichia coli EC1737]
gi|425331883|ref|ZP_18719711.1| rhomboid protease glpG [Escherichia coli EC1846]
gi|425338060|ref|ZP_18725408.1| rhomboid protease glpG [Escherichia coli EC1847]
gi|425344373|ref|ZP_18731255.1| rhomboid protease glpG [Escherichia coli EC1848]
gi|425350173|ref|ZP_18736632.1| rhomboid protease glpG [Escherichia coli EC1849]
gi|425356481|ref|ZP_18742540.1| rhomboid protease glpG [Escherichia coli EC1850]
gi|425362443|ref|ZP_18748081.1| rhomboid protease glpG [Escherichia coli EC1856]
gi|425368658|ref|ZP_18753773.1| rhomboid protease glpG [Escherichia coli EC1862]
gi|425374976|ref|ZP_18759609.1| rhomboid protease glpG [Escherichia coli EC1864]
gi|425387863|ref|ZP_18771414.1| rhomboid protease glpG [Escherichia coli EC1866]
gi|425400654|ref|ZP_18783351.1| rhomboid protease glpG [Escherichia coli EC1869]
gi|425406744|ref|ZP_18788958.1| rhomboid protease glpG [Escherichia coli EC1870]
gi|425413128|ref|ZP_18794883.1| rhomboid protease glpG [Escherichia coli NE098]
gi|425419440|ref|ZP_18800702.1| rhomboid protease glpG [Escherichia coli FRIK523]
gi|428955221|ref|ZP_19027008.1| rhomboid family protease GlpG [Escherichia coli 88.1042]
gi|428961175|ref|ZP_19032463.1| rhomboid family protease GlpG [Escherichia coli 89.0511]
gi|428967829|ref|ZP_19038533.1| rhomboid family protease GlpG [Escherichia coli 90.0091]
gi|428973593|ref|ZP_19043909.1| rhomboid family protease GlpG [Escherichia coli 90.0039]
gi|428980033|ref|ZP_19049841.1| rhomboid family protease GlpG [Escherichia coli 90.2281]
gi|428985802|ref|ZP_19055186.1| rhomboid family protease GlpG [Escherichia coli 93.0055]
gi|428991940|ref|ZP_19060920.1| rhomboid family protease GlpG [Escherichia coli 93.0056]
gi|428997829|ref|ZP_19066415.1| rhomboid family protease GlpG [Escherichia coli 94.0618]
gi|429004107|ref|ZP_19072196.1| rhomboid family protease GlpG [Escherichia coli 95.0183]
gi|429010163|ref|ZP_19077611.1| rhomboid family protease GlpG [Escherichia coli 95.1288]
gi|429016717|ref|ZP_19083591.1| rhomboid family protease GlpG [Escherichia coli 95.0943]
gi|429022549|ref|ZP_19089062.1| rhomboid family protease GlpG [Escherichia coli 96.0428]
gi|429034789|ref|ZP_19100304.1| rhomboid family protease GlpG [Escherichia coli 96.0939]
gi|429040877|ref|ZP_19105970.1| rhomboid family protease GlpG [Escherichia coli 96.0932]
gi|429046699|ref|ZP_19111404.1| rhomboid family protease GlpG [Escherichia coli 96.0107]
gi|429052097|ref|ZP_19116658.1| rhomboid family protease GlpG [Escherichia coli 97.0003]
gi|429057603|ref|ZP_19121878.1| rhomboid family protease GlpG [Escherichia coli 97.1742]
gi|429063103|ref|ZP_19127083.1| rhomboid family protease GlpG [Escherichia coli 97.0007]
gi|429069332|ref|ZP_19132780.1| rhomboid family protease GlpG [Escherichia coli 99.0672]
gi|429075227|ref|ZP_19138473.1| rhomboid family protease GlpG [Escherichia coli 99.0678]
gi|429080437|ref|ZP_19143566.1| rhomboid family protease GlpG [Escherichia coli 99.0713]
gi|429828521|ref|ZP_19359534.1| rhomboid family protease GlpG [Escherichia coli 96.0109]
gi|429834956|ref|ZP_19365251.1| rhomboid family protease GlpG [Escherichia coli 97.0010]
gi|432451639|ref|ZP_19693896.1| rhomboid protease glpG [Escherichia coli KTE193]
gi|433035289|ref|ZP_20222986.1| rhomboid protease glpG [Escherichia coli KTE112]
gi|444927035|ref|ZP_21246304.1| rhomboid family protease GlpG [Escherichia coli 09BKT078844]
gi|444932672|ref|ZP_21251691.1| rhomboid family protease GlpG [Escherichia coli 99.0814]
gi|444938110|ref|ZP_21256863.1| rhomboid family protease GlpG [Escherichia coli 99.0815]
gi|444943722|ref|ZP_21262221.1| rhomboid family protease GlpG [Escherichia coli 99.0816]
gi|444949202|ref|ZP_21267500.1| rhomboid family protease GlpG [Escherichia coli 99.0839]
gi|444954861|ref|ZP_21272935.1| rhomboid family protease GlpG [Escherichia coli 99.0848]
gi|444960275|ref|ZP_21278107.1| rhomboid family protease GlpG [Escherichia coli 99.1753]
gi|444965517|ref|ZP_21283091.1| rhomboid family protease GlpG [Escherichia coli 99.1775]
gi|444971459|ref|ZP_21288804.1| rhomboid family protease GlpG [Escherichia coli 99.1793]
gi|444976753|ref|ZP_21293849.1| rhomboid family protease GlpG [Escherichia coli 99.1805]
gi|444982134|ref|ZP_21299036.1| rhomboid family protease GlpG [Escherichia coli ATCC 700728]
gi|444987633|ref|ZP_21304404.1| rhomboid family protease GlpG [Escherichia coli PA11]
gi|444992850|ref|ZP_21309487.1| rhomboid family protease GlpG [Escherichia coli PA19]
gi|445003718|ref|ZP_21320101.1| rhomboid family protease GlpG [Escherichia coli PA2]
gi|445009090|ref|ZP_21325324.1| rhomboid family protease GlpG [Escherichia coli PA47]
gi|445014222|ref|ZP_21330321.1| rhomboid family protease GlpG [Escherichia coli PA48]
gi|445020132|ref|ZP_21336092.1| rhomboid family protease GlpG [Escherichia coli PA8]
gi|445025505|ref|ZP_21341322.1| rhomboid family protease GlpG [Escherichia coli 7.1982]
gi|445030963|ref|ZP_21346626.1| rhomboid family protease GlpG [Escherichia coli 99.1781]
gi|445036363|ref|ZP_21351885.1| rhomboid family protease GlpG [Escherichia coli 99.1762]
gi|445041983|ref|ZP_21357349.1| rhomboid family protease GlpG [Escherichia coli PA35]
gi|445052787|ref|ZP_21367806.1| rhomboid family protease GlpG [Escherichia coli 95.0083]
gi|445060790|ref|ZP_21373309.1| rhomboid family protease GlpG [Escherichia coli 99.0670]
gi|452968608|ref|ZP_21966835.1| intramembrane serine protease GlpG [Escherichia coli O157:H7 str.
EC4009]
gi|81764752|sp|Q8X6Z6.1|GLPG_ECO57 RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|123561354|sp|Q32AN6.1|GLPG_SHIDS RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|123615899|sp|Q3YWA4.1|GLPG_SHISS RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|226729474|sp|B5YTX6.1|GLPG_ECO5E RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|12518063|gb|AAG58528.1|AE005565_3 protein of glp regulon [Escherichia coli O157:H7 str. EDL933]
gi|13363741|dbj|BAB37690.1| protein of glp regulon [Escherichia coli O157:H7 str. Sakai]
gi|73857501|gb|AAZ90208.1| protein of glp regulon [Shigella sonnei Ss046]
gi|81242909|gb|ABB63619.1| protein of glp regulon [Shigella dysenteriae Sd197]
gi|187771422|gb|EDU35266.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4196]
gi|188018326|gb|EDU56448.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4113]
gi|189002278|gb|EDU71264.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4076]
gi|189359206|gb|EDU77625.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4401]
gi|189364732|gb|EDU83151.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4486]
gi|189374373|gb|EDU92789.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC869]
gi|189379970|gb|EDU98386.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC508]
gi|208725962|gb|EDZ75563.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4206]
gi|208735831|gb|EDZ84518.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4045]
gi|209159086|gb|ACI36519.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4115]
gi|209756338|gb|ACI76481.1| protein of glp regulon [Escherichia coli]
gi|209756340|gb|ACI76482.1| protein of glp regulon [Escherichia coli]
gi|209756342|gb|ACI76483.1| protein of glp regulon [Escherichia coli]
gi|209756344|gb|ACI76484.1| protein of glp regulon [Escherichia coli]
gi|209756346|gb|ACI76485.1| protein of glp regulon [Escherichia coli]
gi|254594741|gb|ACT74102.1| predicted intramembrane serine protease [Escherichia coli O157:H7
str. TW14359]
gi|290764635|gb|ADD58596.1| Rhomboid protease glpG [Escherichia coli O55:H7 str. CB9615]
gi|320191563|gb|EFW66213.1| intramembrane serine protease GlpG [Escherichia coli O157:H7 str.
EC1212]
gi|320650516|gb|EFX18982.1| intramembrane serine protease GlpG [Escherichia coli O157:H- str. H
2687]
gi|320655708|gb|EFX23631.1| intramembrane serine protease GlpG [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320661492|gb|EFX28907.1| intramembrane serine protease GlpG [Escherichia coli O55:H7 str.
USDA 5905]
gi|323164990|gb|EFZ50781.1| rhomboid family protein [Shigella sonnei 53G]
gi|326337611|gb|EGD61446.1| intramembrane serine protease GlpG [Escherichia coli O157:H7 str.
1044]
gi|326344638|gb|EGD68387.1| intramembrane serine protease GlpG [Escherichia coli O157:H7 str.
1125]
gi|345370088|gb|EGX02066.1| rhomboid family protein [Escherichia coli STEC_MHI813]
gi|371604459|gb|EHN93087.1| rhomboid protease glpG [Escherichia coli E101]
gi|374360787|gb|AEZ42494.1| intramembrane serine protease GlpG [Escherichia coli O55:H7 str.
RM12579]
gi|377890270|gb|EHU54728.1| rhomboid family protein [Escherichia coli DEC3A]
gi|377892022|gb|EHU56474.1| rhomboid family protein [Escherichia coli DEC3B]
gi|377903057|gb|EHU67355.1| rhomboid family protein [Escherichia coli DEC3C]
gi|377907173|gb|EHU71409.1| rhomboid family protein [Escherichia coli DEC3D]
gi|377924044|gb|EHU88000.1| rhomboid family protein [Escherichia coli DEC4A]
gi|377939466|gb|EHV03221.1| rhomboid family protein [Escherichia coli DEC4C]
gi|377945059|gb|EHV08757.1| rhomboid family protein [Escherichia coli DEC4E]
gi|377954427|gb|EHV17986.1| rhomboid family protein [Escherichia coli DEC4F]
gi|377970765|gb|EHV34123.1| rhomboid family protein [Escherichia coli DEC5C]
gi|377972236|gb|EHV35586.1| rhomboid family protein [Escherichia coli DEC5D]
gi|386798031|gb|AFJ31065.1| intramembrane serine protease GlpG [Escherichia coli Xuzhou21]
gi|390638623|gb|EIN18126.1| rhomboid protease glpG [Escherichia coli FRIK1996]
gi|390640100|gb|EIN19565.1| rhomboid protease glpG [Escherichia coli FDA517]
gi|390640431|gb|EIN19890.1| rhomboid protease glpG [Escherichia coli FDA505]
gi|390657980|gb|EIN35787.1| rhomboid protease glpG [Escherichia coli 93-001]
gi|390661158|gb|EIN38829.1| rhomboid protease glpG [Escherichia coli FRIK1990]
gi|390675042|gb|EIN51206.1| rhomboid protease glpG [Escherichia coli PA3]
gi|390678514|gb|EIN54476.1| rhomboid protease glpG [Escherichia coli PA5]
gi|390681860|gb|EIN57644.1| rhomboid protease glpG [Escherichia coli PA9]
gi|390693512|gb|EIN68145.1| rhomboid protease glpG [Escherichia coli PA10]
gi|390697946|gb|EIN72343.1| rhomboid protease glpG [Escherichia coli PA14]
gi|390698497|gb|EIN72876.1| rhomboid protease glpG [Escherichia coli PA15]
gi|390712388|gb|EIN85345.1| rhomboid protease glpG [Escherichia coli PA22]
gi|390719271|gb|EIN92005.1| rhomboid protease glpG [Escherichia coli PA25]
gi|390720756|gb|EIN93462.1| rhomboid protease glpG [Escherichia coli PA24]
gi|390725252|gb|EIN97772.1| rhomboid protease glpG [Escherichia coli PA28]
gi|390738788|gb|EIO09992.1| rhomboid protease glpG [Escherichia coli PA31]
gi|390739486|gb|EIO10663.1| rhomboid protease glpG [Escherichia coli PA32]
gi|390742697|gb|EIO13693.1| rhomboid protease glpG [Escherichia coli PA33]
gi|390756317|gb|EIO25828.1| rhomboid protease glpG [Escherichia coli PA40]
gi|390762924|gb|EIO32177.1| rhomboid protease glpG [Escherichia coli PA39]
gi|390764512|gb|EIO33720.1| rhomboid protease glpG [Escherichia coli PA41]
gi|390766169|gb|EIO35302.1| rhomboid protease glpG [Escherichia coli PA42]
gi|390787064|gb|EIO54562.1| rhomboid protease glpG [Escherichia coli TW07945]
gi|390787745|gb|EIO55218.1| rhomboid protease glpG [Escherichia coli TW10246]
gi|390793881|gb|EIO61208.1| rhomboid protease glpG [Escherichia coli TW11039]
gi|390802127|gb|EIO69176.1| rhomboid protease glpG [Escherichia coli TW09098]
gi|390813999|gb|EIO80579.1| rhomboid protease glpG [Escherichia coli TW10119]
gi|390823572|gb|EIO89621.1| rhomboid protease glpG [Escherichia coli EC4203]
gi|390825173|gb|EIO91113.1| rhomboid protease glpG [Escherichia coli TW09195]
gi|390828457|gb|EIO94123.1| rhomboid protease glpG [Escherichia coli EC4196]
gi|390842767|gb|EIP06603.1| rhomboid protease glpG [Escherichia coli TW14313]
gi|390843812|gb|EIP07587.1| rhomboid protease glpG [Escherichia coli TW14301]
gi|390848469|gb|EIP11939.1| rhomboid protease glpG [Escherichia coli EC4421]
gi|390858895|gb|EIP21263.1| rhomboid protease glpG [Escherichia coli EC4422]
gi|390863276|gb|EIP25417.1| rhomboid protease glpG [Escherichia coli EC4013]
gi|390867825|gb|EIP29597.1| rhomboid protease glpG [Escherichia coli EC4402]
gi|390881533|gb|EIP42123.1| rhomboid protease glpG [Escherichia coli EC4436]
gi|390891280|gb|EIP50917.1| rhomboid protease glpG [Escherichia coli EC4437]
gi|390893422|gb|EIP52984.1| rhomboid protease glpG [Escherichia coli EC4448]
gi|390898160|gb|EIP57433.1| rhomboid protease glpG [Escherichia coli EC1738]
gi|390906546|gb|EIP65437.1| rhomboid protease glpG [Escherichia coli EC1734]
gi|390916574|gb|EIP75026.1| rhomboid protease glpG [Escherichia coli EC1863]
gi|390917501|gb|EIP75924.1| rhomboid protease glpG [Escherichia coli EC1845]
gi|391278540|gb|EIQ37247.1| rhomboid protease glpG [Shigella sonnei 3226-85]
gi|391281724|gb|EIQ40363.1| rhomboid protease glpG [Shigella sonnei 3233-85]
gi|391292101|gb|EIQ50456.1| rhomboid family protein [Shigella sonnei 4822-66]
gi|397896568|gb|EJL12987.1| rhomboid family protein [Shigella sonnei str. Moseley]
gi|408062250|gb|EKG96756.1| rhomboid protease glpG [Escherichia coli PA7]
gi|408064629|gb|EKG99110.1| rhomboid protease glpG [Escherichia coli FRIK920]
gi|408076870|gb|EKH11084.1| rhomboid protease glpG [Escherichia coli FDA506]
gi|408080816|gb|EKH14865.1| rhomboid protease glpG [Escherichia coli FDA507]
gi|408089069|gb|EKH22401.1| rhomboid protease glpG [Escherichia coli FDA504]
gi|408095178|gb|EKH28164.1| rhomboid protease glpG [Escherichia coli FRIK1999]
gi|408101583|gb|EKH34016.1| rhomboid protease glpG [Escherichia coli FRIK1997]
gi|408113097|gb|EKH44704.1| rhomboid protease glpG [Escherichia coli NE037]
gi|408119332|gb|EKH50409.1| rhomboid protease glpG [Escherichia coli FRIK2001]
gi|408125503|gb|EKH56108.1| rhomboid family protease GlpG [Escherichia coli PA4]
gi|408135315|gb|EKH65107.1| rhomboid protease glpG [Escherichia coli PA23]
gi|408138172|gb|EKH67858.1| rhomboid protease glpG [Escherichia coli PA49]
gi|408144586|gb|EKH73816.1| rhomboid protease glpG [Escherichia coli PA45]
gi|408152887|gb|EKH81307.1| rhomboid protease glpG [Escherichia coli TT12B]
gi|408157922|gb|EKH86060.1| rhomboid protease glpG [Escherichia coli MA6]
gi|408161889|gb|EKH89814.1| rhomboid protease glpG [Escherichia coli 5905]
gi|408171346|gb|EKH98473.1| rhomboid protease glpG [Escherichia coli CB7326]
gi|408178040|gb|EKI04783.1| rhomboid protease glpG [Escherichia coli EC96038]
gi|408181127|gb|EKI07703.1| rhomboid protease glpG [Escherichia coli 5412]
gi|408214587|gb|EKI39011.1| rhomboid protease glpG [Escherichia coli PA38]
gi|408224739|gb|EKI48443.1| rhomboid protease glpG [Escherichia coli EC1735]
gi|408236051|gb|EKI58971.1| rhomboid protease glpG [Escherichia coli EC1736]
gi|408239838|gb|EKI62576.1| rhomboid protease glpG [Escherichia coli EC1737]
gi|408244430|gb|EKI66868.1| rhomboid protease glpG [Escherichia coli EC1846]
gi|408253194|gb|EKI74807.1| rhomboid protease glpG [Escherichia coli EC1847]
gi|408256958|gb|EKI78312.1| rhomboid protease glpG [Escherichia coli EC1848]
gi|408263658|gb|EKI84502.1| rhomboid protease glpG [Escherichia coli EC1849]
gi|408272081|gb|EKI92188.1| rhomboid protease glpG [Escherichia coli EC1850]
gi|408274807|gb|EKI94793.1| rhomboid protease glpG [Escherichia coli EC1856]
gi|408283493|gb|EKJ02667.1| rhomboid protease glpG [Escherichia coli EC1862]
gi|408289210|gb|EKJ07984.1| rhomboid protease glpG [Escherichia coli EC1864]
gi|408305799|gb|EKJ23189.1| rhomboid protease glpG [Escherichia coli EC1866]
gi|408316657|gb|EKJ32917.1| rhomboid protease glpG [Escherichia coli EC1869]
gi|408322113|gb|EKJ38108.1| rhomboid protease glpG [Escherichia coli EC1870]
gi|408324380|gb|EKJ40313.1| rhomboid protease glpG [Escherichia coli NE098]
gi|408334712|gb|EKJ49588.1| rhomboid protease glpG [Escherichia coli FRIK523]
gi|408546310|gb|EKK23726.1| rhomboid family protease GlpG [Escherichia coli 5.2239]
gi|408546533|gb|EKK23947.1| rhomboid family protease GlpG [Escherichia coli 3.4870]
gi|408547403|gb|EKK24798.1| rhomboid family protease GlpG [Escherichia coli 6.0172]
gi|408564941|gb|EKK41038.1| rhomboid family protease GlpG [Escherichia coli 8.0586]
gi|408576484|gb|EKK52076.1| rhomboid family protease GlpG [Escherichia coli 10.0833]
gi|408579246|gb|EKK54716.1| rhomboid family protease GlpG [Escherichia coli 8.2524]
gi|408589157|gb|EKK63689.1| rhomboid family protease GlpG [Escherichia coli 10.0869]
gi|408594303|gb|EKK68589.1| rhomboid family protease GlpG [Escherichia coli 88.0221]
gi|408599548|gb|EKK73448.1| rhomboid family protease GlpG [Escherichia coli 8.0416]
gi|427202127|gb|EKV72470.1| rhomboid family protease GlpG [Escherichia coli 88.1042]
gi|427203063|gb|EKV73369.1| rhomboid family protease GlpG [Escherichia coli 89.0511]
gi|427218593|gb|EKV87590.1| rhomboid family protease GlpG [Escherichia coli 90.0091]
gi|427221880|gb|EKV90683.1| rhomboid family protease GlpG [Escherichia coli 90.2281]
gi|427225290|gb|EKV93939.1| rhomboid family protease GlpG [Escherichia coli 90.0039]
gi|427239207|gb|EKW06699.1| rhomboid family protease GlpG [Escherichia coli 93.0056]
gi|427239515|gb|EKW06998.1| rhomboid family protease GlpG [Escherichia coli 93.0055]
gi|427243656|gb|EKW11020.1| rhomboid family protease GlpG [Escherichia coli 94.0618]
gi|427257865|gb|EKW23981.1| rhomboid family protease GlpG [Escherichia coli 95.0183]
gi|427258980|gb|EKW25054.1| rhomboid family protease GlpG [Escherichia coli 95.0943]
gi|427261451|gb|EKW27387.1| rhomboid family protease GlpG [Escherichia coli 95.1288]
gi|427274274|gb|EKW38933.1| rhomboid family protease GlpG [Escherichia coli 96.0428]
gi|427281291|gb|EKW45616.1| rhomboid family protease GlpG [Escherichia coli 96.0939]
gi|427289801|gb|EKW53317.1| rhomboid family protease GlpG [Escherichia coli 96.0932]
gi|427296443|gb|EKW59497.1| rhomboid family protease GlpG [Escherichia coli 96.0107]
gi|427298532|gb|EKW61533.1| rhomboid family protease GlpG [Escherichia coli 97.0003]
gi|427309029|gb|EKW71357.1| rhomboid family protease GlpG [Escherichia coli 97.1742]
gi|427312145|gb|EKW74306.1| rhomboid family protease GlpG [Escherichia coli 97.0007]
gi|427317019|gb|EKW78937.1| rhomboid family protease GlpG [Escherichia coli 99.0672]
gi|427325710|gb|EKW87144.1| rhomboid family protease GlpG [Escherichia coli 99.0678]
gi|427327173|gb|EKW88573.1| rhomboid family protease GlpG [Escherichia coli 99.0713]
gi|429251787|gb|EKY36365.1| rhomboid family protease GlpG [Escherichia coli 96.0109]
gi|429253051|gb|EKY37551.1| rhomboid family protease GlpG [Escherichia coli 97.0010]
gi|430978068|gb|ELC94891.1| rhomboid protease glpG [Escherichia coli KTE193]
gi|431547343|gb|ELI21723.1| rhomboid protease glpG [Escherichia coli KTE112]
gi|444535990|gb|ELV16038.1| rhomboid family protease GlpG [Escherichia coli 99.0814]
gi|444537348|gb|ELV17288.1| rhomboid family protease GlpG [Escherichia coli 09BKT078844]
gi|444546160|gb|ELV24936.1| rhomboid family protease GlpG [Escherichia coli 99.0815]
gi|444555425|gb|ELV32894.1| rhomboid family protease GlpG [Escherichia coli 99.0839]
gi|444555891|gb|ELV33334.1| rhomboid family protease GlpG [Escherichia coli 99.0816]
gi|444560690|gb|ELV37839.1| rhomboid family protease GlpG [Escherichia coli 99.0848]
gi|444569970|gb|ELV46521.1| rhomboid family protease GlpG [Escherichia coli 99.1753]
gi|444573915|gb|ELV50258.1| rhomboid family protease GlpG [Escherichia coli 99.1775]
gi|444576958|gb|ELV53104.1| rhomboid family protease GlpG [Escherichia coli 99.1793]
gi|444590177|gb|ELV65491.1| rhomboid family protease GlpG [Escherichia coli PA11]
gi|444590452|gb|ELV65763.1| rhomboid family protease GlpG [Escherichia coli ATCC 700728]
gi|444591426|gb|ELV66716.1| rhomboid family protease GlpG [Escherichia coli 99.1805]
gi|444604774|gb|ELV79437.1| rhomboid family protease GlpG [Escherichia coli PA19]
gi|444613191|gb|ELV87454.1| rhomboid family protease GlpG [Escherichia coli PA2]
gi|444620896|gb|ELV94888.1| rhomboid family protease GlpG [Escherichia coli PA47]
gi|444621127|gb|ELV95105.1| rhomboid family protease GlpG [Escherichia coli PA48]
gi|444627606|gb|ELW01364.1| rhomboid family protease GlpG [Escherichia coli PA8]
gi|444635901|gb|ELW09310.1| rhomboid family protease GlpG [Escherichia coli 7.1982]
gi|444638453|gb|ELW11791.1| rhomboid family protease GlpG [Escherichia coli 99.1781]
gi|444643015|gb|ELW16186.1| rhomboid family protease GlpG [Escherichia coli 99.1762]
gi|444652413|gb|ELW25174.1| rhomboid family protease GlpG [Escherichia coli PA35]
gi|444660703|gb|ELW33053.1| rhomboid family protease GlpG [Escherichia coli 95.0083]
gi|444667913|gb|ELW39941.1| rhomboid family protease GlpG [Escherichia coli 99.0670]
Length = 276
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ A+ WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPALKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|293416826|ref|ZP_06659463.1| rhomboid protease glpG [Escherichia coli B185]
gi|291431402|gb|EFF04387.1| rhomboid protease glpG [Escherichia coli B185]
Length = 276
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ A+ WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPALKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|400293315|ref|ZP_10795191.1| peptidase, S54 family [Actinomyces naeslundii str. Howell 279]
gi|399901556|gb|EJN84435.1| peptidase, S54 family [Actinomyces naeslundii str. Howell 279]
Length = 285
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 71/158 (44%), Gaps = 23/158 (14%)
Query: 43 YETAVDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLV 101
+ A WR +T+AF H + +HL FNM ALW L G +E + TA YL L
Sbjct: 110 FPAAAASEPWRFLTTAFLHANYMHLGFNMWALWVLGGALEPVLGRWRFTAVYL-----LS 164
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
L G IY L + E + +T VG S VFG + + V Q D G ++L
Sbjct: 165 ALGGSTA--IYWLSWP--ETEAWTTLT-VGASGAVFGLFSTMFVVQRRFGRDTSGIVAL- 218
Query: 162 ISFAPFESLIFTSIIV---PQASFLGHLSGIIVGYAIA 196
L+ ++ S+ GHL G+IVG +A
Sbjct: 219 --------LVINGVVSFLGANISWQGHLGGLIVGGIVA 248
>gi|424099098|ref|ZP_17834370.1| rhomboid protease glpG [Escherichia coli FRIK1985]
gi|390657784|gb|EIN35595.1| rhomboid protease glpG [Escherichia coli FRIK1985]
Length = 265
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ A+ WR T
Sbjct: 73 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPALKFEFWRYFTH 130
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 131 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 178
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 179 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 210
>gi|452824142|gb|EME31147.1| rhomboid domain-containing protein 1 [Galdieria sulphuraria]
Length = 337
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 61 HISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
H S HL+FN+ AL +G VVE L L LV L + L IY +Q
Sbjct: 69 HSSFWHLLFNVIALLGIGPVVESRKGSTLYGLLCLLLLLVSESLFLIFELLIY---LQSR 125
Query: 120 KLEYF--RRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIV 177
L +F + VG+S ++F I ++ + LFG + + ++ P+ L+ I+
Sbjct: 126 YLFFFPISQSCVVGFSGLLFALFVIDCIQVSVRTVQLFGRIPVRSNWIPWIFLLLIQAIL 185
Query: 178 PQASFLGHLSGIIVGY 193
P SFLGHLSGI GY
Sbjct: 186 PGVSFLGHLSGIFAGY 201
>gi|365972495|ref|YP_004954056.1| Rhomboid protease glpG [Enterobacter cloacae EcWSU1]
gi|365751408|gb|AEW75635.1| Rhomboid protease glpG [Enterobacter cloacae EcWSU1]
Length = 285
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 21/153 (13%)
Query: 4 PLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLS----YETAVDGHHWRIITSAF 59
P F + E+ ++ + + I +I +G V ++ Y+ ++D WR T A
Sbjct: 93 PFFATVRERAGPFTLLLMAACIIVFIMMNVVGDQSVMIALAWPYDPSLDVDVWRYFTHAL 152
Query: 60 SHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQ 117
H SV+H++FN+ W LG V ++LG L +V+ V+S LL + H
Sbjct: 153 MHFSVMHILFNLLWWWYLGGAVEKRLGSGKL---------IVITVISALLSGYVQH---- 199
Query: 118 RFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
+F +F ++ V Y+ + + W+ + P S
Sbjct: 200 KFSGPWFGGLSGVVYALMGYVWLR--GERDPES 230
>gi|89891565|ref|ZP_01203069.1| putative transmembrane rhomboid family protein [Flavobacteria
bacterium BBFL7]
gi|89516112|gb|EAS18775.1| putative transmembrane rhomboid family protein [Flavobacteria
bacterium BBFL7]
Length = 287
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 13/172 (7%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
W I+T AF H + HL +NM L+S G + + L+ + +G+L
Sbjct: 59 WSILTYAFLHSGIFHLFWNMLILFSFG--------QMMLNLFKSRQLITLFFAGVLSGAA 110
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
++LL + Y VG S V+ + QP +++ L F +L + + + L+
Sbjct: 111 FYLLGESLFSTYVNSAGLVGASAGVYAVALFVCTYQPETEVRLI-FFNLKLKYIGYFLLV 169
Query: 172 FT--SIIVPQ--ASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVF 219
T I P L HL GI +G+ A + G + LS +G ++ F
Sbjct: 170 MTIAGIFAPDNVGGNLAHLGGIAIGFYAALKMREGNDILKGLSSIGDQLMSF 221
>gi|444319963|ref|XP_004180638.1| hypothetical protein TBLA_0E00580 [Tetrapisispora blattae CBS 6284]
gi|387513681|emb|CCH61119.1| hypothetical protein TBLA_0E00580 [Tetrapisispora blattae CBS 6284]
Length = 353
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 74/168 (44%), Gaps = 24/168 (14%)
Query: 51 HWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W II S+FSH HL FNM ALWS G+ L ++ LG + + + + L L
Sbjct: 190 KWSIIGSSFSHQEFWHLGFNMLALWSFGI--SLANM-LGVSNFFSLYMNSAIAGSLFSL- 245
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESL 170
++ I R L ++G S +FG + S PS+K+ LF F PI + +
Sbjct: 246 -WYPRIARLALM----GPSLGASGALFGVLGCFSYLFPSAKILLFVF---PIPGGAW--V 295
Query: 171 IFTSIIVPQASFLG----------HLSGIIVGYAIAWGLIHGMNNYWA 208
F + +V A+ G HL G ++G A W + M A
Sbjct: 296 AFLASMVWNAAGCGLRWGSLDYAAHLGGSLIGIAYGWSISKTMKKQRA 343
>gi|373253330|ref|ZP_09541448.1| rhomboid family protein [Nesterenkonia sp. F]
Length = 219
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 68/148 (45%), Gaps = 24/148 (16%)
Query: 52 WRIITSAFSHI--SVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVL 109
WR++TSA H SV+H+ FNM ALW VV + + +GT YL LLVL
Sbjct: 47 WRMLTSAVLHSPSSVMHIAFNMMALW---VVGRTIEPAVGTWRYLS----------LLVL 93
Query: 110 GIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSL-PISFAPFE 168
+ + L +T VG S VFG L V S+ G ++L I+ A
Sbjct: 94 SAFGASVAVLFLSEPGTLT-VGASGAVFGLFGALFVLLRSTGAQTGGIIALVGINMA--- 149
Query: 169 SLIFTSIIVPQASFLGHLSGIIVGYAIA 196
S +VP S+ GHL G++ G A
Sbjct: 150 ----VSFLVPGISWQGHLGGLVTGLLTA 173
>gi|336066342|ref|YP_004561200.1| peptidase, S54 (rhomboid) family [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296288|dbj|BAK32159.1| peptidase, S54 (rhomboid) family [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 399
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 95/227 (41%), Gaps = 45/227 (19%)
Query: 13 PATSCIIGICSVIWFYIQ------KKNIGYSHV--GLSYET-AVDGHHW-RIITSAFSHI 62
P T+ I IC V++ Q + NI V G Y+ V H W R IT+ F HI
Sbjct: 155 PVTNVISIICVVVFLLAQYLILIPELNINTVAVMLGAFYKPFIVHAHEWFRFITAGFLHI 214
Query: 63 SVLHLVFNMSALWSLGVVEQLGDVGLGTAY--------YLQYTLVLVVLSGLLVLGIYHL 114
S LHL+ N+ AL +LGVV + V G Y + V ++ G++ LGI
Sbjct: 215 SFLHLIMNLMALRNLGVVME--TVMEGKKYLFTLIAGILMGNAFVFILDEGVIGLGISGG 272
Query: 115 LIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTS 174
L F L +G CV +++ P +F L F +LI +S
Sbjct: 273 L---FAL--------LGAMCVYL--FETKAIRNPKVMSQVFQVL--------FINLIISS 311
Query: 175 IIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVY 221
+ P S HL G+I G + GL+ W G ++L V+
Sbjct: 312 L--PGVSATAHLGGLIAG--LLCGLVFSKRKDWDYLRKGTMILSAVF 354
>gi|189403678|ref|ZP_02784459.2| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4501]
gi|195934914|ref|ZP_03080296.1| intramembrane serine protease GlpG [Escherichia coli O157:H7 str.
EC4024]
gi|208821987|ref|ZP_03262307.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4042]
gi|217324284|ref|ZP_03440368.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
TW14588]
gi|261224706|ref|ZP_05938987.1| predicted intramembrane serine protease [Escherichia coli O157:H7
str. FRIK2000]
gi|261254399|ref|ZP_05946932.1| predicted intramembrane serine protease [Escherichia coli O157:H7
str. FRIK966]
gi|416778049|ref|ZP_11875621.1| intramembrane serine protease GlpG [Escherichia coli O157:H7 str.
G5101]
gi|416789334|ref|ZP_11880465.1| intramembrane serine protease GlpG [Escherichia coli O157:H- str.
493-89]
gi|416832773|ref|ZP_11899936.1| intramembrane serine protease GlpG [Escherichia coli O157:H7 str.
LSU-61]
gi|419071602|ref|ZP_13617211.1| rhomboid family protein [Escherichia coli DEC3E]
gi|419077616|ref|ZP_13623118.1| rhomboid family protein [Escherichia coli DEC3F]
gi|419088479|ref|ZP_13633830.1| rhomboid family protein [Escherichia coli DEC4B]
gi|419100220|ref|ZP_13645409.1| rhomboid family protein [Escherichia coli DEC4D]
gi|419122661|ref|ZP_13667603.1| rhomboid family protein [Escherichia coli DEC5B]
gi|419138669|ref|ZP_13683459.1| rhomboid protease glpG [Escherichia coli DEC5E]
gi|420282809|ref|ZP_14785041.1| rhomboid protease glpG [Escherichia coli TW06591]
gi|420300406|ref|ZP_14802449.1| rhomboid protease glpG [Escherichia coli TW09109]
gi|421820186|ref|ZP_16255672.1| rhomboid family protease GlpG [Escherichia coli 10.0821]
gi|424552781|ref|ZP_17994617.1| rhomboid protease glpG [Escherichia coli EC4439]
gi|425158137|ref|ZP_18557393.1| rhomboid protease glpG [Escherichia coli PA34]
gi|425195366|ref|ZP_18592128.1| rhomboid protease glpG [Escherichia coli NE1487]
gi|425394516|ref|ZP_18777617.1| rhomboid protease glpG [Escherichia coli EC1868]
gi|425430717|ref|ZP_18811318.1| rhomboid protease glpG [Escherichia coli 0.1304]
gi|428949149|ref|ZP_19021416.1| rhomboid family protease GlpG [Escherichia coli 88.1467]
gi|429028621|ref|ZP_19094606.1| rhomboid family protease GlpG [Escherichia coli 96.0427]
gi|444998086|ref|ZP_21314580.1| rhomboid family protease GlpG [Escherichia coli PA13]
gi|445047253|ref|ZP_21362496.1| rhomboid family protease GlpG [Escherichia coli 3.4880]
gi|189369508|gb|EDU87924.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4501]
gi|208742110|gb|EDZ89792.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
EC4042]
gi|217320505|gb|EEC28929.1| peptidase, S54 (rhomboid) family [Escherichia coli O157:H7 str.
TW14588]
gi|320639706|gb|EFX09300.1| intramembrane serine protease GlpG [Escherichia coli O157:H7 str.
G5101]
gi|320645205|gb|EFX14221.1| intramembrane serine protease GlpG [Escherichia coli O157:H- str.
493-89]
gi|320666515|gb|EFX33498.1| intramembrane serine protease GlpG [Escherichia coli O157:H7 str.
LSU-61]
gi|377908679|gb|EHU72890.1| rhomboid family protein [Escherichia coli DEC3E]
gi|377918489|gb|EHU82537.1| rhomboid family protein [Escherichia coli DEC3F]
gi|377927541|gb|EHU91456.1| rhomboid family protein [Escherichia coli DEC4B]
gi|377938447|gb|EHV02214.1| rhomboid family protein [Escherichia coli DEC4D]
gi|377962729|gb|EHV26181.1| rhomboid family protein [Escherichia coli DEC5B]
gi|377980793|gb|EHV44053.1| rhomboid protease glpG [Escherichia coli DEC5E]
gi|390779600|gb|EIO47314.1| rhomboid protease glpG [Escherichia coli TW06591]
gi|390804777|gb|EIO71725.1| rhomboid protease glpG [Escherichia coli TW09109]
gi|390876119|gb|EIP37114.1| rhomboid protease glpG [Escherichia coli EC4439]
gi|408067363|gb|EKH01805.1| rhomboid protease glpG [Escherichia coli PA34]
gi|408106365|gb|EKH38473.1| rhomboid protease glpG [Escherichia coli NE1487]
gi|408305041|gb|EKJ22449.1| rhomboid protease glpG [Escherichia coli EC1868]
gi|408343841|gb|EKJ58234.1| rhomboid protease glpG [Escherichia coli 0.1304]
gi|408610231|gb|EKK83605.1| rhomboid family protease GlpG [Escherichia coli 10.0821]
gi|427205909|gb|EKV76138.1| rhomboid family protease GlpG [Escherichia coli 88.1467]
gi|427277023|gb|EKW41582.1| rhomboid family protease GlpG [Escherichia coli 96.0427]
gi|444604194|gb|ELV78869.1| rhomboid family protease GlpG [Escherichia coli PA13]
gi|444657637|gb|ELW30106.1| rhomboid family protease GlpG [Escherichia coli 3.4880]
Length = 274
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ A+ WR T
Sbjct: 82 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPALKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 140 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 188 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 219
>gi|420377377|ref|ZP_14876999.1| rhomboid protease glpG, partial [Shigella flexneri 1235-66]
gi|391296308|gb|EIQ54403.1| rhomboid protease glpG, partial [Shigella flexneri 1235-66]
Length = 222
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 23/158 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 30 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 87
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 88 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYMQ-------- 135
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
Q+F +F ++ V Y+ + + W+ + P S + L
Sbjct: 136 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQSGIYL 171
>gi|336309603|ref|ZP_08564587.1| GlpG protein (membrane protein of glp regulon) [Shewanella sp.
HN-41]
gi|335866914|gb|EGM71856.1| GlpG protein (membrane protein of glp regulon) [Shewanella sp.
HN-41]
Length = 279
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 29/191 (15%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDG----HHWRIITSAFSHISVLHLV 68
P T I +CS+I+ + ++ LSY AV WR+ T + H S +H++
Sbjct: 98 PITLIIFALCSIIFAAMNLGFANQTYEALSYFGAVPNADFSQFWRVFTPSLLHFSAMHII 157
Query: 69 FNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF-KLEYFRRV 127
FN+ W LG + +GTA L++L LLV G ++Q + F +
Sbjct: 158 FNLLWWWYLGGKIE---TRIGTA-------PLLIL--LLVAGTLPNIVQYYVSGPNFGGL 205
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE----SLIFTSIIVPQASFL 183
+ V Y+ + W ++ +++P++ + LP S+ F L FT ++ +
Sbjct: 206 SGVVYAVAGYTW--VMGIRKPAAG------IGLPPSYMGFMLIWLVLGFTDVLGISVANG 257
Query: 184 GHLSGIIVGYA 194
H+ G+I+G A
Sbjct: 258 AHIGGLIIGLA 268
>gi|392426192|ref|YP_006467186.1| putative membrane protein [Desulfosporosinus acidiphilus SJ4]
gi|391356155|gb|AFM41854.1| putative membrane protein [Desulfosporosinus acidiphilus SJ4]
Length = 322
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQL 83
G WR++TS F HI HL FN+ ALW+LG + +L
Sbjct: 175 GQVWRLLTSMFIHIGYFHLAFNLYALWALGPLTEL 209
>gi|84394332|ref|ZP_00993055.1| GlpG protein [Vibrio splendidus 12B01]
gi|84375062|gb|EAP91986.1| GlpG protein [Vibrio splendidus 12B01]
Length = 281
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T ++ +C VI F +Q+ G + + AVDG W R ++ A H SV+H+ F
Sbjct: 98 PVTLSLMLVCVVI-FALQQVGFGQAIFNALHFPAVDGQQWQLWRWLSHAVLHFSVMHIAF 156
Query: 70 NMSALWSLGVVEQLGDV--GLGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ LG+ LQ V LSG
Sbjct: 157 NILWWWQLG-----GDIEKKLGSLKLLQIFAVSSALSG 189
>gi|301310430|ref|ZP_07216369.1| putative Rhomboid family membrane protein [Bacteroides sp. 20_3]
gi|423336678|ref|ZP_17314425.1| hypothetical protein HMPREF1059_00377 [Parabacteroides distasonis
CL09T03C24]
gi|300832004|gb|EFK62635.1| putative Rhomboid family membrane protein [Bacteroides sp. 20_3]
gi|409240558|gb|EKN33336.1| hypothetical protein HMPREF1059_00377 [Parabacteroides distasonis
CL09T03C24]
Length = 201
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 15 TSCIIGICSVIWFY-IQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSA 73
T IIGI ++ F + + + Y T + ++RI+T F H + HL+ NM
Sbjct: 3 TYLIIGITVILSFICFSNRELFMKLAFIPYRTIRNHEYYRIVTHGFIHADMTHLLVNMFT 62
Query: 74 LWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVG 131
WS G + +G G+ YL + G++V +Y LI+R Y+ + A G
Sbjct: 63 FWSFGLYIERTFRYMGFGSGAYLA-----LYFGGMIVASLYD-LIKRRNDPYYVSIGASG 116
Query: 132 -YSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
S V+F + + P K+ F L +P
Sbjct: 117 AVSAVLFTSIFL----DPWGKILFFAVLPVP 143
>gi|397671735|ref|YP_006513270.1| peptidase, S54 family [Propionibacterium propionicum F0230a]
gi|395143082|gb|AFN47189.1| peptidase, S54 family [Propionibacterium propionicum F0230a]
Length = 272
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 44 ETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLV 99
E G W+++T+AF+H+ V+H+ FNM AL+ LG QL V LG A +L LV
Sbjct: 100 EGVASGAWWQVLTNAFTHLDVIHIAFNMVALYVLG--PQLESV-LGRARFLALYLV 152
>gi|383316784|ref|YP_005377626.1| hypothetical protein [Frateuria aurantia DSM 6220]
gi|379043888|gb|AFC85944.1| putative membrane protein [Frateuria aurantia DSM 6220]
Length = 216
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
Query: 46 AVDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLS 104
AV W++I+ AF H SV H++FNM ALW G +E+ LGT ++ Y +V +
Sbjct: 53 AVGFRPWQLISYAFMHGSVTHILFNMLALWMFGGTIER----TLGTPRFVIYYFACLVCA 108
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
L L + + F +G S VFG + V P K+ F+ +P+
Sbjct: 109 ALAQLAVTAWFLPGFY-------PTLGASGAVFGLLLAFGVFYPREKVY---FMLIPV-- 156
Query: 165 APFESLIFTSI 175
P + +F ++
Sbjct: 157 -PLPAWLFVTL 166
>gi|307719843|ref|YP_003875375.1| rhomboid family protein [Spirochaeta thermophila DSM 6192]
gi|306533568|gb|ADN03102.1| rhomboid family protein [Spirochaeta thermophila DSM 6192]
Length = 213
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 30/181 (16%)
Query: 3 RPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVD-------GHHWRII 55
+P YE + T +IG +++F + Y + GL Y A++ G W+++
Sbjct: 9 KPFRYEFLN--VTLYLIGTNLLVFF------LTYLNRGLLYYMALNPLYLLKGGMVWQLV 60
Query: 56 TSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHL 114
+ F+H S H++FNM L+ G+ VE+ +G+ +L + + +GL+ L +Y L
Sbjct: 61 SYMFAHASFNHILFNMLGLFFFGLQVER----EMGSREFLLFYFFTGIFAGLVSLLVYWL 116
Query: 115 LIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTS 174
V +G S VV+G + + P +++ LFG +P AP+ + +T+
Sbjct: 117 SGA-------YGVFLLGASGVVYGVLLAFATFYPRARIFLFGIFPVP---APYLVIGYTA 166
Query: 175 I 175
I
Sbjct: 167 I 167
>gi|284028038|ref|YP_003377969.1| Rhomboid family protein [Kribbella flavida DSM 17836]
gi|283807331|gb|ADB29170.1| Rhomboid family protein [Kribbella flavida DSM 17836]
Length = 246
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 24/153 (15%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQ-LGDVGLGTAYYLQYTLVLVVLS 104
VD WR+ TSAF+H+ + H+ N+ L+ +G ++EQ LG + Y+L L
Sbjct: 101 VDSEPWRLFTSAFTHLQIFHIFSNLFMLYQVGPLLEQMLGRLRFVLLYFLS------ALG 154
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
G + + + + + +G S V G + L V + +D+ L ++
Sbjct: 155 GSIAVWLLANPVS----------STLGASGAVLGLVGALLVISRARGMDVTWIL----AY 200
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
++I S + P S+ GHL G + G AIAW
Sbjct: 201 VAITAVI--SFLFPNISWQGHLGGFLAGAAIAW 231
>gi|424029428|ref|ZP_17768961.1| rhomboid protease glpG [Vibrio cholerae HENC-01]
gi|408886962|gb|EKM25611.1| rhomboid protease glpG [Vibrio cholerae HENC-01]
Length = 280
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T I+ +C+VI+F +Q G L + A +G W R ++ A H SV H+VF
Sbjct: 98 PVTLLIMVVCAVIYF-LQMFGFGDGVFALLHFPAFEGQQWQLWRWVSHALLHFSVTHIVF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ L + LQ L+ LSG
Sbjct: 157 NLLWWWQLG-----GDIERRLSSGKLLQIFLISAALSG 189
>gi|218710913|ref|YP_002418534.1| thiosulfate sulfurtransferase GlpG [Vibrio splendidus LGP32]
gi|218323932|emb|CAV20293.1| Thiosulfate sulfurtransferase glpG [Vibrio splendidus LGP32]
Length = 280
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T ++ +C VI F +Q+ G + + AVDG W R ++ A H SV+H+ F
Sbjct: 98 PVTLSLMLVCVVI-FALQQIGFGQAIFNALHFPAVDGQQWQLWRWLSHAVLHFSVMHIAF 156
Query: 70 NMSALWSLGVVEQLGDV--GLGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ LG+ LQ V LSG
Sbjct: 157 NILWWWQLG-----GDIEKKLGSLKLLQIFAVSSALSG 189
>gi|238061764|ref|ZP_04606473.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
gi|237883575|gb|EEP72403.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
Length = 303
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
V G +R++T+ F H V+HL+ NM ALW LG + + LG +L L+ G
Sbjct: 135 VQGEWYRLVTAMFLHYGVVHLLLNMWALWVLG---RSLEANLGPLRFLALYLI-AGFGG- 189
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
++ F E T G S +FG L V + D+ L + +
Sbjct: 190 ------NVAAYLFSAE---NATTAGASTAIFGLFAALIVIERRMGRDISSVLPVLVI--- 237
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
+L+FT + VP S GHL G++ G A+A
Sbjct: 238 --NLVFT-LTVPGISIPGHLGGLVTGGAMA 264
>gi|149016258|gb|EDL75504.1| hypothetical LOC316557, isoform CRA_a [Rattus norvegicus]
gi|149016260|gb|EDL75506.1| hypothetical LOC316557, isoform CRA_a [Rattus norvegicus]
Length = 187
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 124 FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
F+R AVG+S V+F + + P +++ GF +P FA + L P SF
Sbjct: 6 FKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGF-PVPNRFACWAELAAIHFCTPGTSFA 64
Query: 184 GHLSGIIVG 192
GHL+GI+VG
Sbjct: 65 GHLAGILVG 73
>gi|126438092|ref|YP_001073783.1| rhomboid family protein [Mycobacterium sp. JLS]
gi|126237892|gb|ABO01293.1| Rhomboid family protein [Mycobacterium sp. JLS]
Length = 289
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 27/156 (17%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ--LGDVGLGTAYYLQYTLVLVVLS 104
DG +R+ TSAF H +HL+FNM AL+ +G + LG + G Y L L
Sbjct: 111 ADGEWYRLATSAFLHYGAMHLLFNMWALYVVGPPLEMWLGRLRFGALY------ALSALG 164
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
G +++ + L TA G S VFG + V LD+ G ++ I
Sbjct: 165 GSVLV---------YLLSPINAATA-GASGAVFGLFGAMFVVARKLNLDIRGIAAIII-- 212
Query: 165 APFESLIFT---SIIVPQA-SFLGHLSGIIVGYAIA 196
+L+FT +I Q S+ GH+ G++ G AIA
Sbjct: 213 ---LNLVFTFVYPLISGQGISWQGHVGGLVTGAAIA 245
>gi|340931880|gb|EGS19413.1| GPI transamidase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 867
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 115 LIQRFKLEYFRRVTA------VGYSCVVFGWMTILSVKQ-PSSKLDLFGFLSLPISFAPF 167
L++RF+ EY T +G S VF + + +++ ++ + G ++P P
Sbjct: 89 LLERFEAEYGTLTTLALFFGLMGASIWVFLLLGMEAIRTYKTNPYFVLGTHNIPTWTTPI 148
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLI 200
L S +VP ASFLGHLSG+IVGY +G +
Sbjct: 149 LVLFCVSALVPSASFLGHLSGLIVGYVCGFGYV 181
>gi|149016259|gb|EDL75505.1| hypothetical LOC316557, isoform CRA_b [Rattus norvegicus]
gi|149016261|gb|EDL75507.1| hypothetical LOC316557, isoform CRA_b [Rattus norvegicus]
Length = 168
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 124 FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
F+R AVG+S V+F + + P +++ GF +P FA + L P SF
Sbjct: 6 FKRNCAVGFSGVLFALKVLSNHYCPGGFVNILGF-PVPNRFACWAELAAIHFCTPGTSFA 64
Query: 184 GHLSGIIVG 192
GHL+GI+VG
Sbjct: 65 GHLAGILVG 73
>gi|336173957|ref|YP_004581095.1| rhomboid family protein [Lacinutrix sp. 5H-3-7-4]
gi|334728529|gb|AEH02667.1| Rhomboid family protein [Lacinutrix sp. 5H-3-7-4]
Length = 215
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 17/118 (14%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLS 104
+ G R+++S F H+++ HL+FNM +L+ VV LGD+ V++ L
Sbjct: 39 IRGEKIRMLSSGFLHVNLQHLIFNMFSLYFFAPVVVGMLGDI----------NFVIIYLG 88
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPI 162
LL+ + + + Y TAVG S V G + + QP L LF F+ +PI
Sbjct: 89 SLLLGNVLSYYFHKNEYHY----TAVGASGAVMGIIYSAILLQPGMSLYLF-FIPIPI 141
>gi|432854823|ref|ZP_20083094.1| rhomboid protease glpG [Escherichia coli KTE144]
gi|431397905|gb|ELG81337.1| rhomboid protease glpG [Escherichia coli KTE144]
Length = 276
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W+L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWNLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|239986984|ref|ZP_04707648.1| hypothetical protein SrosN1_06732 [Streptomyces roseosporus NRRL
11379]
gi|291443931|ref|ZP_06583321.1| rhomboid family protein [Streptomyces roseosporus NRRL 15998]
gi|291346878|gb|EFE73782.1| rhomboid family protein [Streptomyces roseosporus NRRL 15998]
Length = 303
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 85/190 (44%), Gaps = 47/190 (24%)
Query: 26 WFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHI------SVLHLVFNMSALWSLG- 78
++Y GY G++ DG +R++T AF H+ V+HL+FNM ALW++G
Sbjct: 111 YYYRGDTFQGYELTGIA-----DGEWYRLVTGAFLHLPPDASFGVMHLLFNMFALWNIGR 165
Query: 79 VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFG 138
VE LG A YL L+ V +LV +LL + VG S VFG
Sbjct: 166 AVEGQ----LGRARYLALYLLSAVGGSVLV----YLLAP--------DTSTVGASGAVFG 209
Query: 139 -----WMTILSVKQPSSKLDLF--GFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIV 191
W+ + + ++ F GFL + S +FT S+ GHL G++
Sbjct: 210 LAAAYWVIHRRLGHDMAAVNRFMAGFLIWMVL-----SALFT-------SWQGHLGGLLT 257
Query: 192 GYAIAWGLIH 201
G + +GL +
Sbjct: 258 GALVTYGLAY 267
>gi|194017686|ref|ZP_03056296.1| S54 family peptidase [Bacillus pumilus ATCC 7061]
gi|194010586|gb|EDW20158.1| S54 family peptidase [Bacillus pumilus ATCC 7061]
Length = 512
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVV 80
+DG WR+IT F HI + HL+FN ALWS+G
Sbjct: 223 LDGEWWRLITPMFLHIGLTHLLFNTFALWSVGAA 256
>gi|150007604|ref|YP_001302347.1| hypothetical protein BDI_0957 [Parabacteroides distasonis ATCC
8503]
gi|423331906|ref|ZP_17309690.1| hypothetical protein HMPREF1075_01703 [Parabacteroides distasonis
CL03T12C09]
gi|149936028|gb|ABR42725.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
gi|409229747|gb|EKN22619.1| hypothetical protein HMPREF1075_01703 [Parabacteroides distasonis
CL03T12C09]
Length = 201
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 15 TSCIIGICSVIWFY-IQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSA 73
T IIGI V+ F + + + Y T + ++RI+T F H + HL+ NM
Sbjct: 3 TYLIIGITVVLSFICFSNRELFMKLAFIPYRTIRNHEYYRIVTHGFIHADMTHLLVNMFT 62
Query: 74 LWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVG 131
WS G + +G G YL + G++V +Y LI+R Y+ + A G
Sbjct: 63 FWSFGLYIERTFRYMGFGKGAYLA-----LYFGGMIVASLYD-LIKRRNDPYYVSIGASG 116
Query: 132 -YSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
S V+F + + P K+ F L +P
Sbjct: 117 AVSAVLFTSIFL----DPWGKILFFAVLPVP 143
>gi|300946831|ref|ZP_07161073.1| peptidase, S54 family protein [Escherichia coli MS 116-1]
gi|300956756|ref|ZP_07169024.1| peptidase, S54 family protein [Escherichia coli MS 175-1]
gi|417620037|ref|ZP_12270441.1| rhomboid family protein [Escherichia coli G58-1]
gi|419940289|ref|ZP_14457037.1| intramembrane serine protease GlpG [Escherichia coli 75]
gi|432738919|ref|ZP_19973653.1| rhomboid protease glpG [Escherichia coli KTE42]
gi|300316452|gb|EFJ66236.1| peptidase, S54 family protein [Escherichia coli MS 175-1]
gi|300453511|gb|EFK17131.1| peptidase, S54 family protein [Escherichia coli MS 116-1]
gi|345371125|gb|EGX03098.1| rhomboid family protein [Escherichia coli G58-1]
gi|388403538|gb|EIL64043.1| intramembrane serine protease GlpG [Escherichia coli 75]
gi|431279947|gb|ELF70894.1| rhomboid protease glpG [Escherichia coli KTE42]
Length = 276
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ +C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIVCVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|418945588|ref|ZP_13498379.1| intramembrane serine protease GlpG, partial [Escherichia coli
O157:H43 str. T22]
gi|375319098|gb|EHS65353.1| intramembrane serine protease GlpG, partial [Escherichia coli
O157:H43 str. T22]
Length = 205
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 23/158 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 13 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 70
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 71 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 118
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
Q+F +F ++ V Y+ + + W+ + P S + L
Sbjct: 119 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQSGIYL 154
>gi|386347942|ref|YP_006046191.1| rhomboid family protein [Spirochaeta thermophila DSM 6578]
gi|339412909|gb|AEJ62474.1| Rhomboid family protein [Spirochaeta thermophila DSM 6578]
Length = 213
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 30/181 (16%)
Query: 3 RPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVD-------GHHWRII 55
+P YE + T +IG +++F + Y + GL Y A++ G W+++
Sbjct: 9 KPFRYEFLN--VTLYLIGANLLVFF------LTYLNRGLLYYMALNPLYLLKGGMVWQLV 60
Query: 56 TSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHL 114
+ F+H S H++FNM L+ G+ VE+ +G+ +L + + +GL+ L +Y L
Sbjct: 61 SYMFAHASFNHILFNMLGLFFFGLQVER----EMGSREFLLFYFFTGIFAGLVSLLVYWL 116
Query: 115 LIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTS 174
V +G S VV+G + + P +++ LFG +P AP+ + +T+
Sbjct: 117 SGA-------YGVFLLGASGVVYGVLLAFATFYPRARIFLFGIFPVP---APYLVIGYTA 166
Query: 175 I 175
I
Sbjct: 167 I 167
>gi|451972030|ref|ZP_21925243.1| peptidase, S54 (rhomboid) family, putative [Vibrio alginolyticus
E0666]
gi|451932044|gb|EMD79725.1| peptidase, S54 (rhomboid) family, putative [Vibrio alginolyticus
E0666]
Length = 280
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRI---ITSAFSHISVLHLVF 69
P T I+ +C++I + +Q G L + A +G W++ ++ A H SV H+VF
Sbjct: 98 PMTLLIMTVCTII-YLLQMFGFGNGVFKLLHFPAFEGQQWQVWRWLSHALLHFSVTHIVF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ LG+ LQ +V LSG
Sbjct: 157 NLLWWWQLG-----GDIERRLGSGKLLQLFVVSAALSG 189
>gi|390959611|ref|YP_006423368.1| hypothetical protein Terro_3824 [Terriglobus roseus DSM 18391]
gi|390414529|gb|AFL90033.1| putative membrane protein [Terriglobus roseus DSM 18391]
Length = 232
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 42 SYETAVDGHHW-RIITSAFSHISVLHLVFNMSALWSLGVVEQ--LGDVGLGTAYYL 94
+ E + GH W RI+++ F H+ ++HL NM LW+LGV+ + LG +G+ + Y L
Sbjct: 23 NAEAVLGGHEWFRILSAMFVHVGIVHLGLNMWCLWNLGVIGEPLLGVLGMFSVYLL 78
>gi|108802111|ref|YP_642308.1| rhomboid-like protein [Mycobacterium sp. MCS]
gi|119871264|ref|YP_941216.1| rhomboid family protein [Mycobacterium sp. KMS]
gi|108772530|gb|ABG11252.1| Rhomboid-like protein [Mycobacterium sp. MCS]
gi|119697353|gb|ABL94426.1| Rhomboid family protein [Mycobacterium sp. KMS]
Length = 289
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 27/156 (17%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ--LGDVGLGTAYYLQYTLVLVVLS 104
DG +R+ TSAF H +HL+FNM AL+ +G + LG + G Y L L
Sbjct: 111 ADGEWYRLATSAFLHYGAMHLLFNMWALYVVGPPLEMWLGRLRFGALY------ALSALG 164
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
G +++ + L TA G S VFG + V LD+ G ++ I
Sbjct: 165 GSVLV---------YLLSPINAATA-GASGAVFGLFGAMFVVARKLNLDIRGIAAIII-- 212
Query: 165 APFESLIFT---SIIVPQA-SFLGHLSGIIVGYAIA 196
+L+FT +I Q S+ GH+ G++ G AIA
Sbjct: 213 ---LNLVFTFVYPLISGQGISWQGHVGGLVTGAAIA 245
>gi|149374498|ref|ZP_01892272.1| hypothetical protein MDG893_10636 [Marinobacter algicola DG893]
gi|149361201|gb|EDM49651.1| hypothetical protein MDG893_10636 [Marinobacter algicola DG893]
Length = 291
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 45 TAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLS 104
T G WR+IT F H S H++FN LW LG + D G A L L V++
Sbjct: 138 TLAGGQVWRLITPDFLHFSWTHIIFNSVMLWFLGSQVEWFD---GRARL----LALFVVT 190
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVK--QPSSKLDLFGFLSLPI 162
LL G+ +++ F ++ V Y + + W++ V Q L F + I
Sbjct: 191 SLLSNGLQYIV----SGPLFGGLSGVVYGILGYCWLSQRRVPRFQFPPALVTFAVAWMVI 246
Query: 163 SFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
F PF ++ + +A HL G + G A+A
Sbjct: 247 GFTPFTEMVGLGQMANEA----HLGGFVAGLALA 276
>gi|424038453|ref|ZP_17777035.1| rhomboid protease glpG [Vibrio cholerae HENC-02]
gi|408894346|gb|EKM31096.1| rhomboid protease glpG [Vibrio cholerae HENC-02]
Length = 269
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T I+ +C+VI+F +Q G L + A +G W R ++ A H SV H+VF
Sbjct: 87 PVTLLIMVVCAVIYF-LQMFGFGDGVFALLHFPAFEGQQWQLWRWVSHALLHFSVTHIVF 145
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ L + LQ L+ LSG
Sbjct: 146 NLLWWWQLG-----GDIERRLSSGKLLQIFLISAALSG 178
>gi|254229776|ref|ZP_04923183.1| peptidase, S54 (rhomboid) family, putative [Vibrio sp. Ex25]
gi|262392917|ref|YP_003284771.1| protein GlpG [Vibrio sp. Ex25]
gi|151937675|gb|EDN56526.1| peptidase, S54 (rhomboid) family, putative [Vibrio sp. Ex25]
gi|262336511|gb|ACY50306.1| protein GlpG [Vibrio sp. Ex25]
Length = 280
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRI---ITSAFSHISVLHLVF 69
P T I+ +C++I + +Q G L + A +G W++ ++ A H SV H+VF
Sbjct: 98 PMTLLIMTVCTII-YLLQMFGFGNGVFKLLHFPAFEGQQWQVWRWLSHALLHFSVTHIVF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ LG+ LQ +V LSG
Sbjct: 157 NLLWWWQLG-----GDIERRLGSGKLLQLFVVSAALSG 189
>gi|417292295|ref|ZP_12079576.1| rhomboid protease GlpG [Escherichia coli B41]
gi|386254617|gb|EIJ04307.1| rhomboid protease GlpG [Escherichia coli B41]
Length = 274
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ +C V+ +I + +G V L ++ + WR T
Sbjct: 82 PFFAALRERAGPVTWVMMIVCVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 140 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 188 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 219
>gi|86743118|ref|YP_483518.1| rhomboid-like protein [Frankia sp. CcI3]
gi|86569980|gb|ABD13789.1| Rhomboid-like protein [Frankia sp. CcI3]
Length = 275
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 46 AVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYL 94
A D ++R++T+AF H VLH++FNM AL+ LG QL + LG A YL
Sbjct: 108 AADDQYYRLLTAAFLHAGVLHILFNMYALYLLGF--QLEAI-LGRARYL 153
>gi|365758129|gb|EHM99987.1| Rbd2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 324
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 20/160 (12%)
Query: 61 HISVLHLVFNMSALWS-LGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
H+S+ HL+FN+ A+W+ L + E+ GT + T V + +S L GI + L+ +
Sbjct: 125 HLSLPHLLFNILAIWAPLNLFEETH----GTVF----TGVFLNMSALFA-GILYCLVGKL 175
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVK-QPSSKLDLFGFLSLPISFAPFESLIFTSIIVP 178
A G+ +F + + + +P +++ + S+P + P LI +II+P
Sbjct: 176 LYPEVSVAGASGWCFTLFAYYSFKESQVRPRTRIFRTDY-SIPTLYTPVALLIAIAIIIP 234
Query: 179 QASFLGHLSGIIVGYAIAWGLIHGMNNYW--ALSMLGWIV 216
+SF GH G+ VGYAI G W ++ GWI+
Sbjct: 235 GSSFWGHFFGLCVGYAI------GYKESWFHKITPPGWII 268
>gi|302306353|ref|NP_982633.2| AAR092Wp [Ashbya gossypii ATCC 10895]
gi|299788476|gb|AAS50457.2| AAR092Wp [Ashbya gossypii ATCC 10895]
gi|374105832|gb|AEY94743.1| FAAR092Wp [Ashbya gossypii FDAG1]
Length = 335
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 70/166 (42%), Gaps = 19/166 (11%)
Query: 4 PLFYEIMEKPA--TSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHH----WRIITS 57
P F PA T IIG+ V++ Q+ + L + H W +I S
Sbjct: 122 PPFSYFKAHPAHLTYAIIGLNCVVFGLWQRPRF---WLPLQRYALLQKDHIYSKWSLIGS 178
Query: 58 AFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQ 117
AFSH H NM LWS G + LG A + +L + G + +++ I
Sbjct: 179 AFSHQEFWHFGMNMICLWSFGTSLAM---SLGPANFA--SLYMNSALGASLFSLWYPRIA 233
Query: 118 RFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
R L ++G S +FG + S P+SK+ LF FL +PI
Sbjct: 234 RIALM----GPSLGASGALFGMFAMFSYLAPNSKIMLF-FLPIPID 274
>gi|309785831|ref|ZP_07680462.1| rhomboid family protein [Shigella dysenteriae 1617]
gi|308926951|gb|EFP72427.1| rhomboid family protein [Shigella dysenteriae 1617]
Length = 276
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 21/144 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ A+ WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPALKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWM 140
Q+F +F ++ V Y+ + + W+
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWL 213
>gi|320169570|gb|EFW46469.1| hypothetical protein CAOG_04437 [Capsaspora owczarzaki ATCC 30864]
Length = 323
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 52/120 (43%), Gaps = 20/120 (16%)
Query: 50 HHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVL 109
+W + T A +H +HL+ NM L+S GL A YL L V G L
Sbjct: 175 RYWTMFTHALTHKDPMHLLMNMVGLYSF---------GLQVASYLSPARFLAVYFGAAGL 225
Query: 110 GIYHLLIQRFKLEYFRRV----TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165
G F+LEY RR + +G S V G +++ P SK LF FL + I A
Sbjct: 226 GAA------FELEYERRTQTRHSVIGASDAVLGLISLSVAMFPQSKASLF-FLPIAIPTA 278
>gi|417950440|ref|ZP_12593562.1| thiosulfate sulfurtransferase GlpG [Vibrio splendidus ATCC 33789]
gi|342806563|gb|EGU41783.1| thiosulfate sulfurtransferase GlpG [Vibrio splendidus ATCC 33789]
Length = 280
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T I+ +C VI F +Q+ G + + AVDG W R ++ A H SV+H+ F
Sbjct: 98 PVTLSIMLVCVVI-FSLQQIGFGQAIFNALHFPAVDGQQWQLWRWLSHAVLHFSVMHIAF 156
Query: 70 NMSALWSLGVVEQLGDV--GLGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ LG LQ V LSG
Sbjct: 157 NILWWWQLG-----GDIEKKLGGLKLLQIFAVSSALSG 189
>gi|302552712|ref|ZP_07305054.1| rhomboid family protein [Streptomyces viridochromogenes DSM 40736]
gi|302470330|gb|EFL33423.1| rhomboid family protein [Streptomyces viridochromogenes DSM 40736]
Length = 296
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 47 VDGHHW-RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSG 105
V G W R++TS F+H + H+ FNM +LW LG + LG Y L L ++SG
Sbjct: 127 VAGGEWYRMVTSMFTHQEIWHIAFNMLSLWWLGGPLE---AALGRVRY----LALYLVSG 179
Query: 106 LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165
L + +LL +G S +FG +V D+ ++L ++
Sbjct: 180 LAGSALAYLLAS-------PNTATLGASGAIFGLFGATAVLMRRLNYDMRPIIAL-LAI- 230
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLG 213
+LIFT S+ H+ G++ G I + ++H AL G
Sbjct: 231 ---NLIFTFSPGFNISWQAHIGGLVAGVVIGYAMVHAPRERRALIQYG 275
>gi|433659035|ref|YP_007276414.1| GlpG protein (membrane protein of glp regulon) [Vibrio
parahaemolyticus BB22OP]
gi|432509723|gb|AGB11240.1| GlpG protein (membrane protein of glp regulon) [Vibrio
parahaemolyticus BB22OP]
Length = 269
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T I+ +C+VI + +Q G L + A +G W R ++ A H SV H++F
Sbjct: 87 PVTLLIMTVCAVI-YGLQMLGFGNGVFALLHFPAFEGQQWQLWRWVSHALLHFSVTHIIF 145
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ LG+ LQ +V LSG
Sbjct: 146 NLLWWWQLG-----GDIERRLGSGKLLQIFVVSAALSG 178
>gi|254412747|ref|ZP_05026520.1| peptidase, S54 (rhomboid) family, putative [Coleofasciculus
chthonoplastes PCC 7420]
gi|196180482|gb|EDX75473.1| peptidase, S54 (rhomboid) family, putative [Coleofasciculus
chthonoplastes PCC 7420]
Length = 579
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 72/166 (43%), Gaps = 23/166 (13%)
Query: 44 ETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVL 103
E +DG WR++TS F H LHL+ NM L+ LG + L YL L V
Sbjct: 428 EEVLDGAWWRLLTSTFLHFGFLHLLMNMLGLYILG---PFVEYALSGWRYLLLYLSCGVG 484
Query: 104 SGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSV------KQPSSKL--DLF 155
S L+V H Y VG S V G + + ++ S+L
Sbjct: 485 SMLVVSLATH-------FGYSEAQFVVGASGSVMGIVGATAAILLQGWRREKSRLASRRL 537
Query: 156 GFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
F+ I+F +IF + +PQ SF GH SG+I+G+ + L H
Sbjct: 538 RFILFIIAF----QVIF-DLSIPQVSFTGHTSGLIIGFFVGLLLYH 578
>gi|148981497|ref|ZP_01816437.1| GlpG protein [Vibrionales bacterium SWAT-3]
gi|145960852|gb|EDK26184.1| GlpG protein [Vibrionales bacterium SWAT-3]
Length = 280
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T I+ +C VI F +Q+ G + + AVDG W R ++ A H SV+H+ F
Sbjct: 98 PVTLSIMLVCVVI-FALQQIGFGQAIFNALHFPAVDGQQWQLWRWLSHAVLHFSVMHIAF 156
Query: 70 NMSALWSLGVVEQLGDV--GLGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ LG LQ V LSG
Sbjct: 157 NILWWWQLG-----GDIEKKLGGLKLLQIFAVSSALSG 189
>gi|256839790|ref|ZP_05545299.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256738720|gb|EEU52045.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 201
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 15 TSCIIGICSVIWFY-IQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSA 73
T IIGI ++ F + + + Y T + ++RI+T F H + HL+ NM
Sbjct: 3 TYLIIGITVILSFICFSNRELFIKLAFIPYRTIRNHEYYRIVTHGFIHADMTHLLVNMFT 62
Query: 74 LWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVG 131
WS G + +G G+ YL + G++V +Y LI+R Y+ + A G
Sbjct: 63 FWSFGLYIERTFRYMGFGSGAYLA-----LYFGGMIVASLYD-LIKRRNDPYYVSIGASG 116
Query: 132 -YSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
S V+F + + P K+ F L +P
Sbjct: 117 AVSAVLFTSIFL----DPWGKILFFAVLPVP 143
>gi|254509262|ref|ZP_05121356.1| GlpG protein [Vibrio parahaemolyticus 16]
gi|219547816|gb|EED24847.1| GlpG protein [Vibrio parahaemolyticus 16]
Length = 271
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 86/195 (44%), Gaps = 38/195 (19%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T I+ IC VI F +Q+ G S + A G W R ++ A H SV+H+ F
Sbjct: 87 PMTLAIMLICVVI-FTMQQLGAGDSVFAALHFPAFAGQEWQLWRWMSHAVLHFSVIHIAF 145
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
N+ W LG GD+ LG+ LQ +V LSG G Y + + F +
Sbjct: 146 NLLWWWQLG-----GDIEQRLGSGKLLQLFVVSAALSG---AGQYWV-----EGANFGGL 192
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDL------FGFLSLPISF-APFESLIFTSIIVPQA 180
+ V Y+ V + WM + K P L + F + L + F PF ++ T+
Sbjct: 193 SGVVYALVGYLWM--IGYKAPQLGLSMPKPVIGFMLVWLVLGFVQPFMAIANTA------ 244
Query: 181 SFLGHLSGIIVGYAI 195
HL+G++ G AI
Sbjct: 245 ----HLAGLLAGVAI 255
>gi|167525533|ref|XP_001747101.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774396|gb|EDQ88025.1| predicted protein [Monosiga brevicollis MX1]
Length = 310
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 30/214 (14%)
Query: 10 MEKPATS--------CIIGICSVIW--FYIQKKNIGYSHVGLSYETAVDGHHWRIITSAF 59
M+ PA++ +IGI + ++ +++Q + H S + +G + ++T++F
Sbjct: 55 MQPPASALPGRATTYTLIGINTAVFSLWHLQPPHWMIQHFATSEQNWSEGRWYTLLTASF 114
Query: 60 SHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQ 117
SH S++HL NM L S V LG GL TL LV G + IY +
Sbjct: 115 SHQSLMHLAVNMFVLNSFAPPVAAVLGSAGL-------LTLYLVGGLGASLAHIYESQ-E 166
Query: 118 RFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIV 177
L RR+ A+G S V T+ ++ P + +F + +P A L +
Sbjct: 167 LADLRAGRRLPAIGASGAVLAICTMFALINPMRPIYVFLIIPVPAILAVGAFLAYDIQAS 226
Query: 178 PQAS------FLGHLSGIIVG---YAIAWGLIHG 202
Q S GH+ G + G YA+ W + G
Sbjct: 227 AQLSRHSNVDHAGHIGGALTGLIFYAL-WAALKG 259
>gi|359460821|ref|ZP_09249384.1| rhomboid family protein [Acaryochloris sp. CCMEE 5410]
Length = 537
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 33/185 (17%)
Query: 33 NIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTA 91
N Y+ L V G WR++ +AF H + HL NM L LG VE++ LGT
Sbjct: 361 NALYTLGALIPSEVVAGDWWRLLAAAFLHFGIQHLSLNMFGLALLGPFVEKM----LGTW 416
Query: 92 YYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILS------V 145
+L L+ + G L F AVG S + G + + +
Sbjct: 417 RFLVSYLMTAI-------GSMLTLTLLTITGIFVTPAAVGASGAIMGLIGTEAAIQLRII 469
Query: 146 KQPSSK-----LDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLI 200
+Q SSK L L G + +IF + + PQ SF+GH SG+++G+ + G I
Sbjct: 470 RQQSSKVAATRLRLIGLFVVI-------QMIFDA-MTPQVSFIGHASGLVIGFGV--GCI 519
Query: 201 HGMNN 205
+N+
Sbjct: 520 LKLND 524
>gi|260767582|ref|ZP_05876518.1| protein GlpG [Vibrio furnissii CIP 102972]
gi|260617482|gb|EEX42665.1| protein GlpG [Vibrio furnissii CIP 102972]
Length = 281
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T ++ +C+VI F + +G G + A G W R T A H SV+H+VF
Sbjct: 98 PLTLLVMAVCAVI-FVLAYVGLGNQIFGALHFPAHAGQQWQLWRWFTHALLHFSVIHIVF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ LG+ LQ L+ LSG
Sbjct: 157 NLLWWWQLG-----GDIEKRLGSGKLLQVFLISAALSG 189
>gi|255013867|ref|ZP_05285993.1| hypothetical protein B2_08162 [Bacteroides sp. 2_1_7]
gi|298375549|ref|ZP_06985506.1| rhomboid family membrane protein [Bacteroides sp. 3_1_19]
gi|298268049|gb|EFI09705.1| rhomboid family membrane protein [Bacteroides sp. 3_1_19]
Length = 177
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 41 LSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTL 98
+ Y T + ++RI+T F H + HL+ NM WS G + +G G+ YL +
Sbjct: 6 IPYRTIRNHEYYRIVTHGFIHADMTHLLVNMFTFWSFGLYIERTFRYMGFGSGAYLAF-- 63
Query: 99 VLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVG-YSCVVFGWMTILSVKQPSSKLDLFGF 157
G++V +Y LI+R Y+ + A G S V+F + + P K+ F
Sbjct: 64 ---YFGGMIVASLYD-LIKRRNDPYYVSIGASGAVSAVLFTSIFL----DPWGKILFFAV 115
Query: 158 LSLP 161
L +P
Sbjct: 116 LPVP 119
>gi|86148638|ref|ZP_01066919.1| GlpG protein [Vibrio sp. MED222]
gi|85833557|gb|EAQ51734.1| GlpG protein [Vibrio sp. MED222]
Length = 280
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T ++ +C VI F +Q+ G + + AVDG W R ++ A H SV+H+ F
Sbjct: 98 PVTLSLMLVCVVI-FALQQIGFGQAIFNALHFPAVDGQQWQLWRWLSHAVLHFSVMHIAF 156
Query: 70 NMSALWSLGVVEQLGDV--GLGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ LG+ LQ V LSG
Sbjct: 157 NILWWWQLG-----GDIEKKLGSLKLLQIFAVSSALSG 189
>gi|28492976|ref|NP_787137.1| hypothetical protein TWT009 [Tropheryma whipplei str. Twist]
gi|28476016|gb|AAO44106.1| unknown [Tropheryma whipplei str. Twist]
Length = 212
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 35/196 (17%)
Query: 12 KPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAV----DGHHWRIITSAFSH--ISVL 65
PAT+ II +C +W G + L++ A WRI TS F H + L
Sbjct: 16 PPATATIITLCIFLWLLQMLLGSGVT-TSLAFAGAYVFPDSLQPWRIFTSMFLHSTFTPL 74
Query: 66 HLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGL-LVLGIYHLLIQRFKLEY 123
HL+FNM +LW LG +EQ +G+ + L L +SGL +GI + L+
Sbjct: 75 HLLFNMYSLWWLGSNLEQ----RIGSWRF----LALYFISGLGAAVGIVY-------LQP 119
Query: 124 FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
+ +T +G S +FG + V + S L+G + L + S ++P S+
Sbjct: 120 YNTLT-LGASGGIFGLLAAFIVLRIDSG-QLWGIVGLN---------LIISFLLPGVSWQ 168
Query: 184 GHLSGIIVGYAIAWGL 199
H+ G++ G+ AW +
Sbjct: 169 AHIGGLLSGFVAAWAI 184
>gi|378715572|ref|YP_005280461.1| rhomboid family protein [Gordonia polyisoprenivorans VH2]
gi|375750275|gb|AFA71095.1| rhomboid family protein [Gordonia polyisoprenivorans VH2]
Length = 302
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 35/180 (19%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
G +WR++T+ F H S++HL NM +L+ LG L ++ LG + V+V ++ LL
Sbjct: 120 GQYWRLLTAGFLHYSLIHLAVNMISLYILG--RDL-EIALGIGRF-----VMVYMTALLG 171
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE 168
++ Q + + G S ++G M + L L L +S AP
Sbjct: 172 GSAAVMIAQSNEAR------SAGASGAIYGLMGAM----------LIVVLRLRVSPAPVL 215
Query: 169 SLIFTSII----VPQASFLGHLSGIIVGYAIAWGLI-------HGMNNYWALSMLGWIVL 217
++I +++ +P S H+ G++ G A LI + +++GW+ +
Sbjct: 216 TIIAINLVMSFSIPGISLAAHVGGLVFGAAATAALIWSPRLLPQSLRTDRNATLIGWVAV 275
>gi|320168488|gb|EFW45387.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 327
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 127 VTAVGYSCVVFGWMTI-----LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQAS 181
T++G S V+F + I + + + L ++P S P+ L+ +P S
Sbjct: 136 TTSIGMSGVIFSLLVISIHRTANASAANEQRSLCAIFTVPSSVYPWALLLVIQAFIPSVS 195
Query: 182 FLGHLSGIIVGYAIAWGL 199
FLGHLSGI+VGY GL
Sbjct: 196 FLGHLSGILVGYLFCLGL 213
>gi|28572184|ref|NP_788964.1| integral membrane protein [Tropheryma whipplei TW08/27]
gi|28410315|emb|CAD66701.1| putative integral membrane protein [Tropheryma whipplei TW08/27]
Length = 207
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 35/196 (17%)
Query: 12 KPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAV----DGHHWRIITSAFSH--ISVL 65
PAT+ II +C +W G + L++ A WRI TS F H + L
Sbjct: 11 PPATATIITLCIFLWLLQMLLGSGVT-TSLAFAGAYVFPDSLQPWRIFTSMFLHSTFTPL 69
Query: 66 HLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGL-LVLGIYHLLIQRFKLEY 123
HL+FNM +LW LG +EQ +G+ + L L +SGL +GI + L+
Sbjct: 70 HLLFNMYSLWWLGSNLEQ----RIGSWRF----LALYFISGLGAAVGIVY-------LQP 114
Query: 124 FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
+ +T +G S +FG + V + S L+G + L + S ++P S+
Sbjct: 115 YNTLT-LGASGGIFGLLAAFIVLRIDSG-QLWGIVGLN---------LIISFLLPGVSWQ 163
Query: 184 GHLSGIIVGYAIAWGL 199
H+ G++ G+ AW +
Sbjct: 164 AHIGGLLSGFVAAWAI 179
>gi|348537952|ref|XP_003456456.1| PREDICTED: rhomboid domain-containing protein 1-like [Oreochromis
niloticus]
Length = 298
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 41 LSYETAVDGHHWR-IITSAFSHISVLHLVFNMSA-LWSLGVVEQLGDVGLGTAYYLQYTL 98
+S + WR ++ S HI HL FNM++ LW +E+ LG +++L
Sbjct: 51 MSLDQVYRNKEWRRLLLSPLHHIDDWHLYFNMASFLWKGIRLERR----LGGSWFLYLLS 106
Query: 99 VLVVLSGLLVLGIYHLLIQRFK--------LEY---FRRVTAVGYSCVVFGWMTILSVKQ 147
V +L+GL+ L + L+I+ + LEY F R AVG+S V+F + +
Sbjct: 107 VFFLLTGLVYLLLQALMIKLMEGTDRSDPLLEYVQAFSRECAVGFSGVLFALKVVNNHFN 166
Query: 148 PSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
P + + + FA + L+ +I P S +GHL+G++VG
Sbjct: 167 PGGVTYVMN-IRVSNRFASWVELVLIYLIAPGTSLVGHLAGVLVG 210
>gi|158337464|ref|YP_001518639.1| rhomboid family protein [Acaryochloris marina MBIC11017]
gi|158307705|gb|ABW29322.1| rhomboid family protein [Acaryochloris marina MBIC11017]
Length = 537
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 33/185 (17%)
Query: 33 NIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTA 91
N Y+ L V G WR++ +AF H + HL NM L LG VE++ LGT
Sbjct: 361 NALYTLGALIPSEVVAGDWWRLLAAAFLHFGIEHLSLNMFGLGLLGPFVEKM----LGTW 416
Query: 92 YYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILS------V 145
++ L+ + G L F AVG S + G + + +
Sbjct: 417 RFIVSYLMTAI-------GSMLTLTLLTITGIFVTPAAVGASGAIMGLIGTEAAIQMRII 469
Query: 146 KQPSSK-----LDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLI 200
+Q SSK L L G + +IF + + PQ SF+GH SG+++G+ + G I
Sbjct: 470 RQQSSKVAATRLRLIGLFVVI-------QMIFDA-VTPQVSFIGHASGLVIGFGV--GCI 519
Query: 201 HGMNN 205
+N+
Sbjct: 520 LKLND 524
>gi|377564810|ref|ZP_09794121.1| rhomboid family protein [Gordonia sputi NBRC 100414]
gi|377527964|dbj|GAB39286.1| rhomboid family protein [Gordonia sputi NBRC 100414]
Length = 234
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 30/192 (15%)
Query: 36 YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQ 95
+ H L +G +WR++T+ F H +V+H+ NM +L+ LG L + LG + +L
Sbjct: 43 FQHGDLVRADVANGEYWRLLTAGFLHFTVMHIALNMISLYILG--RDL-ETALGHSRFLM 99
Query: 96 -YTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
Y + L S ++L F+ R A G + G M ++ VK S +
Sbjct: 100 VYFIALFGGSAAVML---------FEAGNVRSAGASGAIYGLMGAMLVIVVKARISPTGV 150
Query: 155 FGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH--------GMNNY 206
+ + + F S+ +P S H+ G++ G A +I+
Sbjct: 151 ITIIVINLVF---------SVTMPGISLAAHVGGLVFGAAATAAVIYLPATLLPDESRTQ 201
Query: 207 WALSMLGWIVLV 218
S +GWI LV
Sbjct: 202 RNASRVGWIALV 213
>gi|323342857|ref|ZP_08083089.1| hypothetical protein HMPREF0357_11270 [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|322463969|gb|EFY09163.1| hypothetical protein HMPREF0357_11270 [Erysipelothrix rhusiopathiae
ATCC 19414]
Length = 399
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 93/223 (41%), Gaps = 45/223 (20%)
Query: 13 PATSCIIGICSVIWFYIQ------KKNIGYSHV--GLSYET-AVDGHHW-RIITSAFSHI 62
P T+ I IC V++ Q + NI V G Y+ V H W R IT+ F HI
Sbjct: 155 PVTNVISIICVVVFLLAQYLILIPELNINTVAVMLGAFYKPFIVHAHEWFRFITAGFLHI 214
Query: 63 SVLHLVFNMSALWSLGVVEQLGDVGLGTAY--------YLQYTLVLVVLSGLLVLGIYHL 114
S LHL+ N+ AL +LGVV + V G Y + V ++ G++ LGI
Sbjct: 215 SFLHLIMNLMALRNLGVV--METVMEGKKYLFTLIAGILMGNAFVFILDEGVIGLGISGG 272
Query: 115 LIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTS 174
L F L +G CV +++ P +F L F +LI +S
Sbjct: 273 L---FAL--------LGAMCVYL--FETKAMRNPKVMSQVFQVL--------FINLIISS 311
Query: 175 IIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVL 217
+ P S HL G+I G + GL+ W G +VL
Sbjct: 312 L--PGVSATAHLGGLIAG--LLCGLVFSKRKDWDYLRKGTMVL 350
>gi|258512176|ref|YP_003185610.1| rhomboid family protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478902|gb|ACV59221.1| Rhomboid family protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 234
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 36/207 (17%)
Query: 21 ICSVIWFYIQKKNIGYSHVGLS-----YETAVDGHHW-RIITSAFSHISVLHLVFNMSAL 74
+ +V+W+ I + G S GL Y V+ W R++++ F H+S+ H++ NM +L
Sbjct: 31 LVTVLWYLIVETITGRSTFGLLRAGALYPPLVEHGQWFRVLSTMFVHVSLWHILVNMISL 90
Query: 75 WSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSC 134
W+L VVEQ L T ++ ++ + LL L I +V+A G S
Sbjct: 91 WTLFVVEQ----ALSTPVFIALYVISGAVGSLLTLPISP-----------DQVSA-GASG 134
Query: 135 VVFGW------MTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSG 188
+FG + ++ + P + L L++ +++ + + ++ HL G
Sbjct: 135 AIFGLFGAMLALALMGMFPPYVRNQLLMVLAV--------NVVIDIMNLGTIGWMAHLGG 186
Query: 189 IIVGYAIAWGLIHGMNNYWALSMLGWI 215
+ G A+ +G + N ++L WI
Sbjct: 187 LATGMALTYGFAKWLRNPRFWTVLAWI 213
>gi|260951065|ref|XP_002619829.1| hypothetical protein CLUG_00988 [Clavispora lusitaniae ATCC 42720]
gi|238847401|gb|EEQ36865.1| hypothetical protein CLUG_00988 [Clavispora lusitaniae ATCC 42720]
Length = 269
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 131 GYSCVVFGWMTILSVKQPSSK-----LDLFGF-LSLPISFAPFESLIFTSIIVPQASFLG 184
G S + F ++T K+ K L+ G L +P + PF +L ++I+P SF G
Sbjct: 122 GLSGICFSFLTYFCYKEHEMKPVIMSLNFAGHELQVPTIYFPFFNLFLIALIIPSTSFFG 181
Query: 185 HLSGIIVGYAIAWG 198
HL+GI GY +A G
Sbjct: 182 HLAGIGAGYLLAMG 195
>gi|159040476|ref|YP_001539729.1| rhomboid family protein [Salinispora arenicola CNS-205]
gi|157919311|gb|ABW00739.1| Rhomboid family protein [Salinispora arenicola CNS-205]
Length = 303
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 20/150 (13%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
+G +R+IT+ F H V+HL+ NM ALW LG L + LG A + L L ++SGL
Sbjct: 135 AEGEWYRLITAMFLHYGVIHLLLNMYALWILG--RNL-EASLGPARF----LALYLISGL 187
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
+ + + TA G S +FG L V D+ L + +
Sbjct: 188 ------GGNVAAYLISAPNAATA-GASTAIFGLFAALFVVGRRLGRDVSQVLPILVI--- 237
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
+L+FT + VP S GHL G+++G +A
Sbjct: 238 --NLVFT-LTVPGISIPGHLGGLVLGALMA 264
>gi|381210355|ref|ZP_09917426.1| hypothetical protein LGrbi_10556 [Lentibacillus sp. Grbi]
Length = 520
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 40 GLSYETAV--DGHHWRIITSAFSHISVLHLVFNMSALWSLGVV 80
G Y A+ DG WRI+ S F HI +LHL+ NM A++ LG V
Sbjct: 216 GAKYNPAIIEDGEWWRIVASMFLHIGILHLLMNMLAVYYLGTV 258
>gi|441498231|ref|ZP_20980431.1| Rhomboid family protein [Fulvivirga imtechensis AK7]
gi|441438019|gb|ELR71363.1| Rhomboid family protein [Fulvivirga imtechensis AK7]
Length = 206
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Query: 30 QKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLG 89
QK++I + Y ++R +TS F H +HL+FNM LW G EQ+ V
Sbjct: 20 QKQDILRKWIFNPYSVNKYKQYYRFVTSGFIHNDFIHLLFNMLVLWMFG--EQVEYV--F 75
Query: 90 TAYYLQYTLVLVV---LSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVK 146
TA Y VL V + G++V I L + Y + G S V+F ++
Sbjct: 76 TALYGTTGTVLFVALYILGIIVSDIPTYLKHKDHAYYNALGASGGVSSVLFSFILF---- 131
Query: 147 QPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSG 188
P+ KL L+G L LP +++ ++ V ++++G G
Sbjct: 132 DPAQKLYLYGILGLP-------GIVWAALYVLYSAYMGKREG 166
>gi|386820315|ref|ZP_10107531.1| putative membrane protein [Joostella marina DSM 19592]
gi|386425421|gb|EIJ39251.1| putative membrane protein [Joostella marina DSM 19592]
Length = 247
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 45/190 (23%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQL----------GDVGLGTA--------Y 92
W+++T F H +H++FNM ALW+ G +EQ+ GLG A Y
Sbjct: 46 WQVVTHMFMHGGFMHILFNMYALWAFGTPLEQMWGKGKFFFFYFSAGLGAALIHTLVNYY 105
Query: 93 YLQYTLVLVVLSGLLVLGIYHLLIQ-RFKLEYFRRVT--------------AVGYSCVVF 137
Y + +V G I ++L Q ++ + ++ AVG S ++
Sbjct: 106 YFNEGMQALVEQGYNQAEILNILSQGKYDTSWANVISESTLQNFISSYMTPAVGASGAIY 165
Query: 138 GWMTILSVKQPSSKLDLFGFLSLPIS---FAP-------FESLIFTSIIVPQASFLGHLS 187
G + + P+++L L FL +PI F P F + SI + HL
Sbjct: 166 GVLVAFGMMFPNAELMLI-FLPIPIKAKYFIPVIIALDLFSGVTGYSIFGQGIAHFAHLG 224
Query: 188 GIIVGYAIAW 197
G + G+ + W
Sbjct: 225 GALFGFIMMW 234
>gi|387887558|ref|YP_006317856.1| inner membrane-associated protein of glp regulon [Escherichia
blattae DSM 4481]
gi|414593244|ref|ZP_11442891.1| rhomboid protease GlpG [Escherichia blattae NBRC 105725]
gi|386922391|gb|AFJ45345.1| inner membrane-associated protein of glp regulon [Escherichia
blattae DSM 4481]
gi|403195762|dbj|GAB80543.1| rhomboid protease GlpG [Escherichia blattae NBRC 105725]
Length = 277
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 27/191 (14%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITSAFSHISVLHLV 68
P T I+ +C V+W +Q +G + L ++ +V WR + A H SVLH+
Sbjct: 96 PFTLLIMAVCIVVWLLMQW--VGNQQMMLWLAWPWDDSVRFELWRYFSHALLHFSVLHIT 153
Query: 69 FNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRR 126
FN+ W LG + ++LG L V+ V+S LL + H +F +F
Sbjct: 154 FNLLWWWYLGGPLEKRLGSGKL---------FVITVISALLSGYVQH----KFSGAWFGG 200
Query: 127 VTAVGYSCVVFGWMTILSVKQPSSKLDL-FGFLSLPISFAPFESLIFTSIIVPQASFLGH 185
++ V Y+ + + W+ + P + + G ++ I + + + A+ H
Sbjct: 201 LSGVVYALMGYCWLR--GERDPECGIHMPRGLMAFAIVWLIAGWFDLFGLSIANAA---H 255
Query: 186 LSGIIVGYAIA 196
SG+ VG A+A
Sbjct: 256 ASGLAVGLAMA 266
>gi|308047879|ref|YP_003911445.1| rhomboid family protein [Ferrimonas balearica DSM 9799]
gi|307630069|gb|ADN74371.1| Rhomboid family protein [Ferrimonas balearica DSM 9799]
Length = 273
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 86/194 (44%), Gaps = 33/194 (17%)
Query: 13 PATSCIIGICSVIW-FYI---QKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLV 68
P T ++ + S IW F+I + ++H S++ +G WR+ T + H S +H++
Sbjct: 96 PLTLSLLVVVSAIWVFWILGFDQLIFSWTHFFPSWDAMGEGQWWRLFTPSLIHFSAMHVI 155
Query: 69 FNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
FN+ W L G +E++ GT L LV L L F F +
Sbjct: 156 FNLLWWWYLGGRIERV----RGTGTLLILLLVAGTLPNLAQFA--------FSGPNFGGL 203
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL---- 183
+ V Y+ V + W+ S +LD L+LP ++ F + +++ A F+
Sbjct: 204 SGVVYALVGYCWI--------SGRLDPRSPLALPPAYVGF---LLLWLVMGFAGFMNMAN 252
Query: 184 -GHLSGIIVGYAIA 196
HL G++VG A A
Sbjct: 253 AAHLGGLLVGMAQA 266
>gi|156972623|ref|YP_001443530.1| peptidase [Vibrio harveyi ATCC BAA-1116]
gi|156524217|gb|ABU69303.1| hypothetical protein VIBHAR_00275 [Vibrio harveyi ATCC BAA-1116]
Length = 280
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T I+ +C+VI+F +Q G L + A G W R I+ A H SV H+VF
Sbjct: 98 PVTLLIMAVCTVIYF-LQMFGFGDGVFALLHFPAFGGQQWQLWRWISHALLHFSVTHIVF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSG 105
N+ W G GD+ L + LQ L+ LSG
Sbjct: 157 NLLWWWQFG-----GDIERRLSSGKLLQIFLISAALSG 189
>gi|30065293|ref|NP_839464.1| intramembrane serine protease GlpG [Shigella flexneri 2a str.
2457T]
gi|56480337|ref|NP_709199.2| intramembrane serine protease GlpG [Shigella flexneri 2a str. 301]
gi|30043555|gb|AAP19275.1| protein of glp regulon [Shigella flexneri 2a str. 2457T]
gi|56383888|gb|AAN44906.2| protein of glp regulon [Shigella flexneri 2a str. 301]
Length = 274
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 82 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 140 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYMQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 188 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 219
>gi|384544990|ref|YP_005729054.1| Protein of glp regulon [Shigella flexneri 2002017]
gi|415858764|ref|ZP_11533216.1| rhomboid family protein [Shigella flexneri 2a str. 2457T]
gi|417704556|ref|ZP_12353649.1| rhomboid family protein [Shigella flexneri K-218]
gi|417725952|ref|ZP_12374731.1| rhomboid family protein [Shigella flexneri K-304]
gi|417731091|ref|ZP_12379770.1| rhomboid family protein [Shigella flexneri K-671]
gi|417736069|ref|ZP_12384704.1| rhomboid family protein [Shigella flexneri 2747-71]
gi|417740963|ref|ZP_12389528.1| rhomboid family protein [Shigella flexneri 4343-70]
gi|417746010|ref|ZP_12394526.1| rhomboid family protein [Shigella flexneri 2930-71]
gi|418260177|ref|ZP_12882785.1| rhomboid family protein [Shigella flexneri 6603-63]
gi|420344527|ref|ZP_14845983.1| rhomboid protease glpG [Shigella flexneri K-404]
gi|172046618|sp|Q83PV6.5|GLPG_SHIFL RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|281602777|gb|ADA75761.1| Protein of glp regulon [Shigella flexneri 2002017]
gi|313647274|gb|EFS11726.1| rhomboid family protein [Shigella flexneri 2a str. 2457T]
gi|332749474|gb|EGJ79891.1| rhomboid family protein [Shigella flexneri K-671]
gi|332750320|gb|EGJ80731.1| rhomboid family protein [Shigella flexneri 4343-70]
gi|332751265|gb|EGJ81668.1| rhomboid family protein [Shigella flexneri 2747-71]
gi|332763589|gb|EGJ93828.1| rhomboid family protein [Shigella flexneri 2930-71]
gi|332997080|gb|EGK16696.1| rhomboid family protein [Shigella flexneri K-218]
gi|333012545|gb|EGK31926.1| rhomboid family protein [Shigella flexneri K-304]
gi|391261212|gb|EIQ20261.1| rhomboid protease glpG [Shigella flexneri K-404]
gi|397893708|gb|EJL10163.1| rhomboid family protein [Shigella flexneri 6603-63]
Length = 276
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYMQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|114321227|ref|YP_742910.1| rhomboid family protein [Alkalilimnicola ehrlichii MLHE-1]
gi|114227621|gb|ABI57420.1| Rhomboid family protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 226
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 22/151 (14%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W+++T F H + HLV N+ A+W LGV VE G+ + Y LV VV +GL+ L
Sbjct: 66 WQLLTYGFLHGGLFHLVVNLFAMWMLGVQVEN----AWGSRLFAIYFLVCVVGAGLVQLV 121
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPI-------S 163
+ + + VG S VFG + + P+ +L L FL +PI +
Sbjct: 122 VATQMAADGAIY-----PTVGASGGVFGILLAFGMMFPNQRLMLI-FLPIPIKAKYFVMA 175
Query: 164 FAPFESLIFTSIIVPQA--SFLGHLSGIIVG 192
+ FE +F I A + HL G++VG
Sbjct: 176 YGAFE--LFAGITRTDAGIAHFAHLGGMVVG 204
>gi|320102400|ref|YP_004177991.1| rhomboid family protein [Isosphaera pallida ATCC 43644]
gi|319749682|gb|ADV61442.1| Rhomboid family protein [Isosphaera pallida ATCC 43644]
Length = 406
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 98/220 (44%), Gaps = 35/220 (15%)
Query: 6 FYEIMEKPATSCIIGICSVIWFY----IQKKNIGYSHVGLSYETAVDGHH---WRIITSA 58
F+++M PAT +I +C ++ +K + GL ++ + WR+ITS
Sbjct: 94 FFQVM--PATKTLILVCVAVFLLQTLGTEKGQPVIATFGLELDSQAVLNQFQVWRLITSI 151
Query: 59 FSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR 118
F H HL+FNM L+ +G ++ + LGT ++ LV ++ L Y L
Sbjct: 152 FLHEGPFHLLFNMLVLFFIG---RILEHELGTREFVMVFLVSGLVGSLAQTAFYALTGPG 208
Query: 119 FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE----SLIFTS 174
L G S V G +L+++ P+ ++ LF + + + A +IFT
Sbjct: 209 LCL---------GASGAVSGLFGLLALRMPNLQVLLFFIIPVTMRNALIAFIVIDVIFTF 259
Query: 175 IIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGW 214
+ A+ L HL G+ VG A ++Y+ L+ GW
Sbjct: 260 LPGTTAT-LAHLGGLSVGMA---------HSYFNLNFSGW 289
>gi|262381898|ref|ZP_06075036.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262297075|gb|EEY85005.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 201
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 15 TSCIIGICSVIWFY-IQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSA 73
T IIGI ++ F + + + Y T + ++RI+T F H + HL+ NM
Sbjct: 3 TYLIIGITVILSFICFSNRELFIKLAFIPYRTIRNHEYYRIVTHGFIHADMTHLLVNMFT 62
Query: 74 LWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVG 131
WS G + +G G+ YL + G++V Y LI+R Y+ + A G
Sbjct: 63 FWSFGLYIERTFRYMGFGSGAYLA-----LYFGGMIVASFYD-LIKRRNDPYYVSIGASG 116
Query: 132 -YSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
S V+F + + P K+ F L +P
Sbjct: 117 AVSAVLFTSIFL----DPWGKILFFAVLPVP 143
>gi|420354917|ref|ZP_14855994.1| rhomboid protease glpG [Shigella boydii 4444-74]
gi|391274126|gb|EIQ32940.1| rhomboid protease glpG [Shigella boydii 4444-74]
Length = 276
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|404443258|ref|ZP_11008430.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
gi|403655930|gb|EJZ10759.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
Length = 289
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 23 SVIWFYIQKKNIGYSH-VGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG 78
+++ F +Q + +GL A DG +R++TSAF H SV H+ FNM AL+ +G
Sbjct: 87 NLVMFALQMASPNLERALGLWPPAAADGELYRLVTSAFLHFSVTHIAFNMLALYFVG 143
>gi|419398664|ref|ZP_13939426.1| rhomboid family protein [Escherichia coli DEC15B]
gi|419403945|ref|ZP_13944663.1| rhomboid family protein [Escherichia coli DEC15C]
gi|378240566|gb|EHY00536.1| rhomboid family protein [Escherichia coli DEC15B]
gi|378244248|gb|EHY04192.1| rhomboid family protein [Escherichia coli DEC15C]
Length = 276
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|82545780|ref|YP_409727.1| intramembrane serine protease GlpG [Shigella boydii Sb227]
gi|416296529|ref|ZP_11651454.1| intramembrane serine protease GlpG [Shigella flexneri CDC 796-83]
gi|417684065|ref|ZP_12333406.1| rhomboid family protein [Shigella boydii 3594-74]
gi|123558456|sp|Q31VK9.1|GLPG_SHIBS RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|81247191|gb|ABB67899.1| protein of glp regulon [Shigella boydii Sb227]
gi|320185934|gb|EFW60683.1| intramembrane serine protease GlpG [Shigella flexneri CDC 796-83]
gi|332090323|gb|EGI95421.1| rhomboid family protein [Shigella boydii 3594-74]
Length = 276
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|331694001|ref|YP_004330240.1| peptidase S54, rhomboid domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326948690|gb|AEA22387.1| Peptidase S54, rhomboid domain protein [Pseudonocardia
dioxanivorans CB1190]
Length = 284
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 66/155 (42%), Gaps = 20/155 (12%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
G WR++T+ F H LHL+FNM ALW +G ++ L T +L V
Sbjct: 121 AQGEWWRVVTAGFLHYGPLHLLFNMLALWVIGRDMEM---------LLGRTRLLAVYLVA 171
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
L+ G L L Y G S VFG M L+V ++ + + +
Sbjct: 172 LLGGSAAAL-----LFYGANSEVAGASGAVFGLMGGLAVALRRMRVPMTQVVVV------ 220
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
I S+ +P S +GHL G+IVG L++
Sbjct: 221 IAINIVLSVTLPGVSLIGHLGGLIVGAVATAALVY 255
>gi|90408718|ref|ZP_01216866.1| glpG protein [Psychromonas sp. CNPT3]
gi|90310169|gb|EAS38306.1| glpG protein [Psychromonas sp. CNPT3]
Length = 285
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 32/158 (20%)
Query: 15 TSCIIGICSVIWFYIQKKNIGYSH-----VGLSYETAVD-GHHWRIITSAFSHISVLHLV 68
T ++G+C ++ + NIG+S + D WR I+ AF H S+LH+V
Sbjct: 101 THSVLGLCVFVFILM---NIGFSESTFRALAFFVNQPFDLSQSWRFISPAFLHFSLLHIV 157
Query: 69 FNMSALWSL-GVVE-QLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRR 126
FN+ W L GV+E Q G L L+L V S + + L+ YF
Sbjct: 158 FNLLWWWQLAGVIEKQQGSARL---------LILFVFSAIASNLAQYFLVS----PYFGG 204
Query: 127 VTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
++ V Y+ V + W+ S +LD ++LP S+
Sbjct: 205 LSGVVYTLVGYCWL--------SGRLDKSSLVNLPQSY 234
>gi|443287776|ref|ZP_21026871.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
gi|385882192|emb|CCH21804.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
Length = 303
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 24/152 (15%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLS 104
+G +R++T+ F H V+HL+ NM ALW LG + LG + G Y ++ L
Sbjct: 135 AEGQWYRLVTAMFLHYGVIHLLLNMWALWVLGRSLEANLGPLRFGALY------LIAGLG 188
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
G + ++ + G S VFG L + + D+ + + +
Sbjct: 189 GNVAAYLFSA----------QNSATAGASTAVFGLFAALIIIERKLGRDISQVIPILVI- 237
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
+L+FT + VP S GHL G++VG A++
Sbjct: 238 ----NLVFT-LTVPGISIPGHLGGLVVGAAMS 264
>gi|374594324|ref|ZP_09667329.1| Rhomboid family protein [Gillisia limnaea DSM 15749]
gi|373872399|gb|EHQ04396.1| Rhomboid family protein [Gillisia limnaea DSM 15749]
Length = 247
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 22/147 (14%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W++IT F H S +H++FNM ALW+ G +EQ+ LG Q + S +
Sbjct: 46 WQVITHMFMHGSFMHILFNMYALWAFGSPIEQM----LG-----QKKFLFFYFSCGIGAA 96
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESL 170
I H L+ F +E YS +V M +++Q L+ + + + P E+L
Sbjct: 97 IIHSLVNYFHVE-------SAYSTLVEAGMNPAAIQQ---LLETGQYSTAILDSVPRETL 146
Query: 171 --IFTSIIVPQASFLGHLSGIIVGYAI 195
+FT+ P G + GI+V + +
Sbjct: 147 ESMFTAYNTPAVGASGAIYGILVAFGM 173
>gi|241895032|ref|ZP_04782328.1| S54 family peptidase [Weissella paramesenteroides ATCC 33313]
gi|241871750|gb|EER75501.1| S54 family peptidase [Weissella paramesenteroides ATCC 33313]
Length = 225
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 15/103 (14%)
Query: 11 EKPATSCIIGICSVIWF--YIQKKNIGYS-----HVGLSYETAVDGHH--WRIITSAFSH 61
+ P T+ +IG VI+ + +G S H+G + AV H WR+IT+ F H
Sbjct: 10 QAPVTTSLIGFMVVIFIGEVVVSGQMGVSTQTLYHLGAMFTPAVVMMHQWWRLITAGFLH 69
Query: 62 ISVLHLVFNMSALWSLG-VVEQ-LGDVGLGTAYYLQYTLVLVV 102
++ +HL+ NM L+ +G ++EQ LG + Y++ Y +++
Sbjct: 70 VTFMHLILNMITLYYVGRLLEQYLGSL----KYFIGYITAIII 108
>gi|419393561|ref|ZP_13934362.1| rhomboid family protein [Escherichia coli DEC15A]
gi|419409104|ref|ZP_13949788.1| rhomboid family protein [Escherichia coli DEC15D]
gi|419414656|ref|ZP_13955290.1| rhomboid family protein [Escherichia coli DEC15E]
gi|378235227|gb|EHX95299.1| rhomboid family protein [Escherichia coli DEC15A]
gi|378252556|gb|EHY12445.1| rhomboid family protein [Escherichia coli DEC15D]
gi|378256680|gb|EHY16528.1| rhomboid family protein [Escherichia coli DEC15E]
Length = 274
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 82 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 140 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 188 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 219
>gi|342321150|gb|EGU13085.1| Hypothetical Protein RTG_00611 [Rhodotorula glutinis ATCC 204091]
Length = 338
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 23/165 (13%)
Query: 41 LSYETAVDGHHWRIITSAFSHISVLHLVFNMSAL--WSLGVVEQLGDVGLGTAYYLQYTL 98
+S+ G W ++TS FSH + H++ NM +L ++ GV+ LG+ G +
Sbjct: 179 VSWHNFTQGRVWTLLTSTFSHEATGHILINMLSLFFFAPGVITLLGNTGF---------I 229
Query: 99 VLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL 158
L V +G+ + L RF + +A G S +G ++ + P K LF L
Sbjct: 230 SLYVFAGVTASAV-SLFFNRFFNKETPNYSAHGASGAAYGIVSFFAALFPRDKFLLFFVL 288
Query: 159 SLP--------ISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAI 195
+P ++ + SL + + A GH+ GI+ G A
Sbjct: 289 PVPAWLVVSGVFAYDLYSSLFRRNGMSDSA---GHVGGILAGLAF 330
>gi|359765361|ref|ZP_09269192.1| rhomboid family protein [Gordonia polyisoprenivorans NBRC 16320]
gi|359317295|dbj|GAB22025.1| rhomboid family protein [Gordonia polyisoprenivorans NBRC 16320]
Length = 264
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 35/180 (19%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
G +WR++T+ F H S++HL NM +L+ LG L ++ LG + V+V ++ LL
Sbjct: 82 GQYWRLLTAGFLHYSLIHLAVNMISLYILG--RDL-EIALGIGRF-----VMVYMTALLG 133
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE 168
++ Q + + G S ++G M + L L L +S AP
Sbjct: 134 GSAAVMIAQSNEAR------SAGASGAIYGLMGAM----------LIVVLRLRVSPAPVL 177
Query: 169 SLIFTSII----VPQASFLGHLSGIIVGYAIAWGLI-------HGMNNYWALSMLGWIVL 217
++I +++ +P S H+ G++ G A LI + +++GW+ +
Sbjct: 178 TIIAINLVMSFSIPGISLAAHVGGLVFGAAATAALIWSPRLLPQSLRTDRNATLIGWVAV 237
>gi|312862457|ref|ZP_07722700.1| peptidase, S54 family [Streptococcus vestibularis F0396]
gi|311102100|gb|EFQ60300.1| peptidase, S54 family [Streptococcus vestibularis F0396]
Length = 224
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 70/147 (47%), Gaps = 28/147 (19%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR++T F HI V H +FNM AL+ +G + EQ+ GT +L L +L+G V+G
Sbjct: 59 WRLVTPIFVHIGVEHFLFNMLALYFMGKMAEQI----FGTLRFLG----LYLLAG--VMG 108
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMT---ILSVKQPSSKLDLFG--FLSLPISFA 165
F L + V A G S +FG IL S L+ G +L+L I
Sbjct: 109 ------NAFTLLFTPNVIAAGASTSLFGLFAAVVILGYYSHSPLLNQLGRNYLALIII-- 160
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192
+LIF ++ P GHL G++ G
Sbjct: 161 ---NLIF-NLFTPSVGITGHLGGLVGG 183
>gi|283954554|ref|ZP_06372073.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni 414]
gi|283793958|gb|EFC32708.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni 414]
Length = 170
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 23/153 (15%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
+G +W++++S F H ++ HL+ NM L+ G ++ + LG+ Y+ + + L G L
Sbjct: 33 NGAYWQLLSSMFLHGNLTHLILNMIVLFQFG---RILESYLGSLYF-----IFLYLMGGL 84
Query: 108 VLGIYHLLIQRFKLEYF----RRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
+ + F +YF + A G CV+ G+ +L K + L + L +S
Sbjct: 85 LCSLLSAFYVYFDFKYFGENANLIGASGAICVLMGFYAVLD-KNSTKGLIV---AILLMS 140
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
FAP ++ ++ GH+ G I GY +A
Sbjct: 141 FAPL-------LMGVNVAWYGHIFGFICGYILA 166
>gi|432528279|ref|ZP_19765355.1| rhomboid protease glpG [Escherichia coli KTE233]
gi|431060902|gb|ELD70224.1| rhomboid protease glpG [Escherichia coli KTE233]
Length = 276
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|187733536|ref|YP_001882101.1| intramembrane serine protease GlpG [Shigella boydii CDC 3083-94]
gi|226729490|sp|B2U3N2.1|GLPG_SHIB3 RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|187430528|gb|ACD09802.1| peptidase, S54 (rhomboid) family [Shigella boydii CDC 3083-94]
Length = 276
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|417116862|ref|ZP_11967723.1| rhomboid protease GlpG [Escherichia coli 1.2741]
gi|386139406|gb|EIG80561.1| rhomboid protease GlpG [Escherichia coli 1.2741]
Length = 274
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 82 PFFAALRERAGPVTWVMMIACVVV--FIAMQMLGDQEVMLWLAWPFDPTLKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 140 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 188 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 219
>gi|157156246|ref|YP_001464883.1| intramembrane serine protease GlpG [Escherichia coli E24377A]
gi|209920881|ref|YP_002294965.1| intramembrane serine protease GlpG [Escherichia coli SE11]
gi|218555972|ref|YP_002388885.1| intramembrane serine protease GlpG [Escherichia coli IAI1]
gi|218697106|ref|YP_002404773.1| intramembrane serine protease GlpG [Escherichia coli 55989]
gi|260846206|ref|YP_003223984.1| intramembrane serine protease GlpG [Escherichia coli O103:H2 str.
12009]
gi|260857530|ref|YP_003231421.1| intramembrane serine protease GlpG [Escherichia coli O26:H11 str.
11368]
gi|260870149|ref|YP_003236551.1| putative intramembrane serine protease GlpG [Escherichia coli
O111:H- str. 11128]
gi|293453729|ref|ZP_06664148.1| intramembrane serine protease GlpG [Escherichia coli B088]
gi|300815376|ref|ZP_07095601.1| peptidase, S54 family protein [Escherichia coli MS 107-1]
gi|300822776|ref|ZP_07102913.1| peptidase, S54 family protein [Escherichia coli MS 119-7]
gi|300907431|ref|ZP_07125078.1| peptidase, S54 family protein [Escherichia coli MS 84-1]
gi|300917248|ref|ZP_07133929.1| peptidase, S54 family protein [Escherichia coli MS 115-1]
gi|300926884|ref|ZP_07142651.1| peptidase, S54 family protein [Escherichia coli MS 182-1]
gi|301302304|ref|ZP_07208436.1| peptidase, S54 family protein [Escherichia coli MS 124-1]
gi|301329740|ref|ZP_07222479.1| peptidase, S54 family protein [Escherichia coli MS 78-1]
gi|307311912|ref|ZP_07591550.1| Rhomboid protease [Escherichia coli W]
gi|309794697|ref|ZP_07689119.1| peptidase, S54 family protein [Escherichia coli MS 145-7]
gi|331679487|ref|ZP_08380157.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli H591]
gi|378711151|ref|YP_005276044.1| rhomboid protease [Escherichia coli KO11FL]
gi|386610784|ref|YP_006126270.1| intramembrane serine protease [Escherichia coli W]
gi|386699635|ref|YP_006163472.1| intramembrane serine protease GlpG [Escherichia coli KO11FL]
gi|407471374|ref|YP_006782183.1| intramembrane serine protease GlpG [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407479970|ref|YP_006777119.1| intramembrane serine protease GlpG [Escherichia coli O104:H4 str.
2011C-3493]
gi|410480531|ref|YP_006768077.1| intramembrane serine protease GlpG [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415795957|ref|ZP_11497392.1| rhomboid family protein [Escherichia coli E128010]
gi|415820203|ref|ZP_11509392.1| rhomboid family protein [Escherichia coli OK1180]
gi|415830988|ref|ZP_11516786.1| rhomboid family protein [Escherichia coli OK1357]
gi|415863055|ref|ZP_11536416.1| peptidase, S54 family protein [Escherichia coli MS 85-1]
gi|415874475|ref|ZP_11541473.1| rhomboid protease GlpG [Escherichia coli MS 79-10]
gi|416267040|ref|ZP_11641778.1| intramembrane serine protease GlpG [Shigella dysenteriae CDC
74-1112]
gi|416344310|ref|ZP_11678184.1| intramembrane serine protease GlpG [Escherichia coli EC4100B]
gi|417222604|ref|ZP_12026044.1| rhomboid protease GlpG [Escherichia coli 96.154]
gi|417267307|ref|ZP_12054668.1| rhomboid protease GlpG [Escherichia coli 3.3884]
gi|417583022|ref|ZP_12233822.1| rhomboid family protein [Escherichia coli STEC_B2F1]
gi|417593818|ref|ZP_12244507.1| rhomboid family protein [Escherichia coli 2534-86]
gi|417598810|ref|ZP_12249436.1| rhomboid family protein [Escherichia coli 3030-1]
gi|417610059|ref|ZP_12260556.1| rhomboid family protein [Escherichia coli STEC_DG131-3]
gi|417625494|ref|ZP_12275785.1| rhomboid family protein [Escherichia coli STEC_H.1.8]
gi|417807058|ref|ZP_12453990.1| intramembrane serine protease GlpG [Escherichia coli O104:H4 str.
LB226692]
gi|417834798|ref|ZP_12481240.1| intramembrane serine protease GlpG [Escherichia coli O104:H4 str.
01-09591]
gi|417866525|ref|ZP_12511566.1| hypothetical protein C22711_3454 [Escherichia coli O104:H4 str.
C227-11]
gi|418040700|ref|ZP_12678936.1| Rhomboid protease [Escherichia coli W26]
gi|419182824|ref|ZP_13726433.1| rhomboid family protein [Escherichia coli DEC7C]
gi|419199124|ref|ZP_13742417.1| rhomboid protease glpG [Escherichia coli DEC8A]
gi|419211877|ref|ZP_13754943.1| rhomboid family protein [Escherichia coli DEC8C]
gi|419217813|ref|ZP_13760807.1| rhomboid family protein [Escherichia coli DEC8D]
gi|419239939|ref|ZP_13782645.1| rhomboid family protein [Escherichia coli DEC9C]
gi|419257035|ref|ZP_13799535.1| rhomboid family protein [Escherichia coli DEC10A]
gi|419269263|ref|ZP_13811606.1| rhomboid family protein [Escherichia coli DEC10C]
gi|419275242|ref|ZP_13817525.1| rhomboid family protein [Escherichia coli DEC10D]
gi|419280053|ref|ZP_13822295.1| rhomboid family protein [Escherichia coli DEC10E]
gi|419336553|ref|ZP_13878070.1| rhomboid family protein [Escherichia coli DEC12D]
gi|419351624|ref|ZP_13892954.1| rhomboid family protein [Escherichia coli DEC13B]
gi|419362076|ref|ZP_13903284.1| rhomboid family protein [Escherichia coli DEC13D]
gi|419367246|ref|ZP_13908395.1| rhomboid family protein [Escherichia coli DEC13E]
gi|419377481|ref|ZP_13918500.1| rhomboid family protein [Escherichia coli DEC14B]
gi|419382818|ref|ZP_13923760.1| rhomboid family protein [Escherichia coli DEC14C]
gi|419388118|ref|ZP_13928986.1| rhomboid family protein [Escherichia coli DEC14D]
gi|419806712|ref|ZP_14331808.1| Rhomboid protease [Escherichia coli AI27]
gi|419862190|ref|ZP_14384806.1| intramembrane serine protease GlpG [Escherichia coli O103:H25 str.
CVM9340]
gi|419871298|ref|ZP_14393357.1| intramembrane serine protease GlpG [Escherichia coli O103:H2 str.
CVM9450]
gi|419878568|ref|ZP_14400034.1| intramembrane serine protease GlpG [Escherichia coli O111:H11 str.
CVM9534]
gi|419881459|ref|ZP_14402780.1| intramembrane serine protease GlpG [Escherichia coli O111:H11 str.
CVM9545]
gi|419888108|ref|ZP_14408638.1| intramembrane serine protease GlpG [Escherichia coli O111:H8 str.
CVM9570]
gi|419896599|ref|ZP_14416273.1| intramembrane serine protease GlpG [Escherichia coli O111:H8 str.
CVM9574]
gi|419902546|ref|ZP_14421750.1| intramembrane serine protease GlpG [Escherichia coli O26:H11 str.
CVM9942]
gi|419907054|ref|ZP_14425911.1| rhomboid protease [Escherichia coli O26:H11 str. CVM10026]
gi|419921409|ref|ZP_14439464.1| intramembrane serine protease GlpG [Escherichia coli 541-15]
gi|419949335|ref|ZP_14465580.1| intramembrane serine protease GlpG [Escherichia coli CUMT8]
gi|420090524|ref|ZP_14602293.1| intramembrane serine protease GlpG [Escherichia coli O111:H8 str.
CVM9602]
gi|420096618|ref|ZP_14607987.1| intramembrane serine protease GlpG [Escherichia coli O111:H8 str.
CVM9634]
gi|420100978|ref|ZP_14612114.1| intramembrane serine protease GlpG [Escherichia coli O111:H11 str.
CVM9455]
gi|420108829|ref|ZP_14619040.1| intramembrane serine protease GlpG [Escherichia coli O111:H11 str.
CVM9553]
gi|420116035|ref|ZP_14625501.1| intramembrane serine protease GlpG [Escherichia coli O26:H11 str.
CVM10021]
gi|420121407|ref|ZP_14630506.1| intramembrane serine protease GlpG [Escherichia coli O26:H11 str.
CVM10030]
gi|420125956|ref|ZP_14634725.1| intramembrane serine protease GlpG [Escherichia coli O26:H11 str.
CVM10224]
gi|420132116|ref|ZP_14640497.1| intramembrane serine protease GlpG [Escherichia coli O26:H11 str.
CVM9952]
gi|420382361|ref|ZP_14881796.1| rhomboid protease glpG [Shigella dysenteriae 225-75]
gi|420387675|ref|ZP_14887014.1| rhomboid protease glpG [Escherichia coli EPECa12]
gi|422353325|ref|ZP_16434085.1| peptidase, S54 family protein [Escherichia coli MS 117-3]
gi|422763706|ref|ZP_16817460.1| rhomboid family protein [Escherichia coli E1167]
gi|422778028|ref|ZP_16831679.1| rhomboid family protein [Escherichia coli H120]
gi|422960951|ref|ZP_16972144.1| rhomboid protease glpG [Escherichia coli H494]
gi|422989602|ref|ZP_16980374.1| rhomboid protease glpG [Escherichia coli O104:H4 str. C227-11]
gi|422996497|ref|ZP_16987260.1| rhomboid protease glpG [Escherichia coli O104:H4 str. C236-11]
gi|423001647|ref|ZP_16992400.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 09-7901]
gi|423005306|ref|ZP_16996051.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 04-8351]
gi|423011812|ref|ZP_17002544.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-3677]
gi|423021039|ref|ZP_17011746.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-4404]
gi|423026204|ref|ZP_17016899.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-4522]
gi|423032023|ref|ZP_17022709.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-4623]
gi|423034895|ref|ZP_17025573.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423040023|ref|ZP_17030692.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423046707|ref|ZP_17037366.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423055244|ref|ZP_17044050.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423057236|ref|ZP_17046035.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423707699|ref|ZP_17682079.1| rhomboid protease glpG [Escherichia coli B799]
gi|424748673|ref|ZP_18176813.1| intramembrane serine protease GlpG [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424767071|ref|ZP_18194408.1| intramembrane serine protease GlpG [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424770075|ref|ZP_18197291.1| intramembrane serine protease GlpG [Escherichia coli O111:H8 str.
CFSAN001632]
gi|425381697|ref|ZP_18765691.1| rhomboid protease glpG [Escherichia coli EC1865]
gi|425424294|ref|ZP_18805448.1| rhomboid protease glpG [Escherichia coli 0.1288]
gi|427806616|ref|ZP_18973683.1| protein of glp regulon [Escherichia coli chi7122]
gi|427811204|ref|ZP_18978269.1| protein of glp regulon [Escherichia coli]
gi|429721068|ref|ZP_19255989.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-9450]
gi|429772965|ref|ZP_19304983.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-02030]
gi|429778331|ref|ZP_19310299.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-02033-1]
gi|429786637|ref|ZP_19318530.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-02092]
gi|429787581|ref|ZP_19319471.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-02093]
gi|429793377|ref|ZP_19325223.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-02281]
gi|429799957|ref|ZP_19331750.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-02318]
gi|429803572|ref|ZP_19335330.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-02913]
gi|429808213|ref|ZP_19339933.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-03439]
gi|429813913|ref|ZP_19345589.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-04080]
gi|429819123|ref|ZP_19350755.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-03943]
gi|429905472|ref|ZP_19371448.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-9990]
gi|429909609|ref|ZP_19375571.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-9941]
gi|429915479|ref|ZP_19381425.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-4984]
gi|429920526|ref|ZP_19386453.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-5604]
gi|429926330|ref|ZP_19392241.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-4986]
gi|429930265|ref|ZP_19396165.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-4987]
gi|429936803|ref|ZP_19402688.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-4988]
gi|429942485|ref|ZP_19408357.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-5603]
gi|429945168|ref|ZP_19411028.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-6006]
gi|429952723|ref|ZP_19418568.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec12-0465]
gi|429956078|ref|ZP_19421908.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec12-0466]
gi|432378586|ref|ZP_19621569.1| rhomboid protease glpG [Escherichia coli KTE12]
gi|432482728|ref|ZP_19724678.1| rhomboid protease glpG [Escherichia coli KTE210]
gi|432535790|ref|ZP_19772749.1| rhomboid protease glpG [Escherichia coli KTE234]
gi|432676528|ref|ZP_19911975.1| rhomboid protease glpG [Escherichia coli KTE142]
gi|432751870|ref|ZP_19986449.1| rhomboid protease glpG [Escherichia coli KTE29]
gi|432766805|ref|ZP_20001220.1| rhomboid protease glpG [Escherichia coli KTE48]
gi|432807655|ref|ZP_20041569.1| rhomboid protease glpG [Escherichia coli KTE91]
gi|432811133|ref|ZP_20044990.1| rhomboid protease glpG [Escherichia coli KTE101]
gi|432829037|ref|ZP_20062654.1| rhomboid protease glpG [Escherichia coli KTE135]
gi|432836360|ref|ZP_20069892.1| rhomboid protease glpG [Escherichia coli KTE136]
gi|432930777|ref|ZP_20131185.1| rhomboid protease glpG [Escherichia coli KTE184]
gi|432965183|ref|ZP_20154107.1| rhomboid protease glpG [Escherichia coli KTE203]
gi|433093788|ref|ZP_20280043.1| rhomboid protease glpG [Escherichia coli KTE138]
gi|433131973|ref|ZP_20317401.1| rhomboid protease glpG [Escherichia coli KTE163]
gi|433136664|ref|ZP_20321994.1| rhomboid protease glpG [Escherichia coli KTE166]
gi|433195448|ref|ZP_20379423.1| rhomboid protease glpG [Escherichia coli KTE90]
gi|443619486|ref|YP_007383342.1| intramembrane serine protease GlpG [Escherichia coli APEC O78]
gi|450223054|ref|ZP_21897113.1| intramembrane serine protease GlpG [Escherichia coli O08]
gi|171855223|sp|A7ZSV4.1|GLPG_ECO24 RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|226729476|sp|B7M2I4.1|GLPG_ECO8A RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|226729479|sp|B6I2Y7.1|GLPG_ECOSE RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|254798882|sp|B7L4V0.1|GLPG_ECO55 RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|157078276|gb|ABV17984.1| peptidase, S54 (rhomboid) family [Escherichia coli E24377A]
gi|209914140|dbj|BAG79214.1| conserved hypothetical protein [Escherichia coli SE11]
gi|218353838|emb|CAV00201.1| putative intramembrane serine protease [Escherichia coli 55989]
gi|218362740|emb|CAR00366.1| putative intramembrane serine protease [Escherichia coli IAI1]
gi|257756179|dbj|BAI27681.1| predicted intramembrane serine protease GlpG [Escherichia coli
O26:H11 str. 11368]
gi|257761353|dbj|BAI32850.1| predicted intramembrane serine protease GlpG [Escherichia coli
O103:H2 str. 12009]
gi|257766505|dbj|BAI38000.1| predicted intramembrane serine protease GlpG [Escherichia coli
O111:H- str. 11128]
gi|291321855|gb|EFE61286.1| intramembrane serine protease GlpG [Escherichia coli B088]
gi|300400846|gb|EFJ84384.1| peptidase, S54 family protein [Escherichia coli MS 84-1]
gi|300415531|gb|EFJ98841.1| peptidase, S54 family protein [Escherichia coli MS 115-1]
gi|300417143|gb|EFK00454.1| peptidase, S54 family protein [Escherichia coli MS 182-1]
gi|300524776|gb|EFK45845.1| peptidase, S54 family protein [Escherichia coli MS 119-7]
gi|300532268|gb|EFK53330.1| peptidase, S54 family protein [Escherichia coli MS 107-1]
gi|300842467|gb|EFK70227.1| peptidase, S54 family protein [Escherichia coli MS 124-1]
gi|300844155|gb|EFK71915.1| peptidase, S54 family protein [Escherichia coli MS 78-1]
gi|306908056|gb|EFN38556.1| Rhomboid protease [Escherichia coli W]
gi|308121747|gb|EFO59009.1| peptidase, S54 family protein [Escherichia coli MS 145-7]
gi|315062701|gb|ADT77028.1| predicted intramembrane serine protease [Escherichia coli W]
gi|315256016|gb|EFU35984.1| peptidase, S54 family protein [Escherichia coli MS 85-1]
gi|320175486|gb|EFW50584.1| intramembrane serine protease GlpG [Shigella dysenteriae CDC
74-1112]
gi|320199597|gb|EFW74187.1| intramembrane serine protease GlpG [Escherichia coli EC4100B]
gi|323162726|gb|EFZ48564.1| rhomboid family protein [Escherichia coli E128010]
gi|323179051|gb|EFZ64625.1| rhomboid family protein [Escherichia coli OK1180]
gi|323182884|gb|EFZ68285.1| rhomboid family protein [Escherichia coli OK1357]
gi|323376712|gb|ADX48980.1| Rhomboid protease [Escherichia coli KO11FL]
gi|323944354|gb|EGB40429.1| rhomboid family protein [Escherichia coli H120]
gi|324018662|gb|EGB87881.1| peptidase, S54 family protein [Escherichia coli MS 117-3]
gi|324116380|gb|EGC10299.1| rhomboid family protein [Escherichia coli E1167]
gi|331072659|gb|EGI43984.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli H591]
gi|340732942|gb|EGR62078.1| intramembrane serine protease GlpG [Escherichia coli O104:H4 str.
01-09591]
gi|340738515|gb|EGR72764.1| intramembrane serine protease GlpG [Escherichia coli O104:H4 str.
LB226692]
gi|341919814|gb|EGT69424.1| hypothetical protein C22711_3454 [Escherichia coli O104:H4 str.
C227-11]
gi|342930002|gb|EGU98724.1| rhomboid protease GlpG [Escherichia coli MS 79-10]
gi|345333405|gb|EGW65856.1| rhomboid family protein [Escherichia coli 2534-86]
gi|345334802|gb|EGW67243.1| rhomboid family protein [Escherichia coli STEC_B2F1]
gi|345349399|gb|EGW81684.1| rhomboid family protein [Escherichia coli 3030-1]
gi|345355093|gb|EGW87306.1| rhomboid family protein [Escherichia coli STEC_DG131-3]
gi|345373558|gb|EGX05517.1| rhomboid family protein [Escherichia coli STEC_H.1.8]
gi|354858737|gb|EHF19186.1| rhomboid protease glpG [Escherichia coli O104:H4 str. C236-11]
gi|354863191|gb|EHF23625.1| rhomboid protease glpG [Escherichia coli O104:H4 str. C227-11]
gi|354864081|gb|EHF24511.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 04-8351]
gi|354871226|gb|EHF31624.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 09-7901]
gi|354877764|gb|EHF38122.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-3677]
gi|354886665|gb|EHF46947.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-4404]
gi|354890557|gb|EHF50796.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-4522]
gi|354894878|gb|EHF55068.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-4623]
gi|354906683|gb|EHF66757.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354909326|gb|EHF69359.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354911311|gb|EHF71316.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354914084|gb|EHF74069.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-4632 C4]
gi|354921762|gb|EHF81683.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-4632 C5]
gi|371593481|gb|EHN82362.1| rhomboid protease glpG [Escherichia coli H494]
gi|378021596|gb|EHV84298.1| rhomboid family protein [Escherichia coli DEC7C]
gi|378044081|gb|EHW06503.1| rhomboid protease glpG [Escherichia coli DEC8A]
gi|378049665|gb|EHW12003.1| rhomboid family protein [Escherichia coli DEC8C]
gi|378058660|gb|EHW20868.1| rhomboid family protein [Escherichia coli DEC8D]
gi|378080385|gb|EHW42348.1| rhomboid family protein [Escherichia coli DEC9C]
gi|378097593|gb|EHW59345.1| rhomboid family protein [Escherichia coli DEC10A]
gi|378107652|gb|EHW69271.1| rhomboid family protein [Escherichia coli DEC10C]
gi|378112343|gb|EHW73922.1| rhomboid family protein [Escherichia coli DEC10D]
gi|378124966|gb|EHW86369.1| rhomboid family protein [Escherichia coli DEC10E]
gi|378179777|gb|EHX40485.1| rhomboid family protein [Escherichia coli DEC12D]
gi|378197468|gb|EHX57949.1| rhomboid family protein [Escherichia coli DEC13B]
gi|378199609|gb|EHX60070.1| rhomboid family protein [Escherichia coli DEC13D]
gi|378209903|gb|EHX70270.1| rhomboid family protein [Escherichia coli DEC13E]
gi|378216194|gb|EHX76482.1| rhomboid family protein [Escherichia coli DEC14B]
gi|378224759|gb|EHX84960.1| rhomboid family protein [Escherichia coli DEC14C]
gi|378228673|gb|EHX88824.1| rhomboid family protein [Escherichia coli DEC14D]
gi|383391162|gb|AFH16120.1| intramembrane serine protease GlpG [Escherichia coli KO11FL]
gi|383476417|gb|EID68360.1| Rhomboid protease [Escherichia coli W26]
gi|384470303|gb|EIE54418.1| Rhomboid protease [Escherichia coli AI27]
gi|385709331|gb|EIG46329.1| rhomboid protease glpG [Escherichia coli B799]
gi|386202406|gb|EII01397.1| rhomboid protease GlpG [Escherichia coli 96.154]
gi|386229665|gb|EII57020.1| rhomboid protease GlpG [Escherichia coli 3.3884]
gi|388334655|gb|EIL01238.1| intramembrane serine protease GlpG [Escherichia coli O111:H11 str.
CVM9534]
gi|388337477|gb|EIL03978.1| intramembrane serine protease GlpG [Escherichia coli O103:H2 str.
CVM9450]
gi|388345715|gb|EIL11464.1| intramembrane serine protease GlpG [Escherichia coli O103:H25 str.
CVM9340]
gi|388357370|gb|EIL21948.1| intramembrane serine protease GlpG [Escherichia coli O111:H8 str.
CVM9574]
gi|388361045|gb|EIL25188.1| intramembrane serine protease GlpG [Escherichia coli O111:H8 str.
CVM9570]
gi|388365076|gb|EIL28885.1| intramembrane serine protease GlpG [Escherichia coli O111:H11 str.
CVM9545]
gi|388373740|gb|EIL36982.1| intramembrane serine protease GlpG [Escherichia coli O26:H11 str.
CVM9942]
gi|388377974|gb|EIL40754.1| rhomboid protease [Escherichia coli O26:H11 str. CVM10026]
gi|388397799|gb|EIL58761.1| intramembrane serine protease GlpG [Escherichia coli 541-15]
gi|388419300|gb|EIL79047.1| intramembrane serine protease GlpG [Escherichia coli CUMT8]
gi|391298508|gb|EIQ56508.1| rhomboid protease glpG [Shigella dysenteriae 225-75]
gi|391302812|gb|EIQ60662.1| rhomboid protease glpG [Escherichia coli EPECa12]
gi|394385933|gb|EJE63449.1| intramembrane serine protease GlpG [Escherichia coli O111:H8 str.
CVM9602]
gi|394388429|gb|EJE65711.1| intramembrane serine protease GlpG [Escherichia coli O111:H8 str.
CVM9634]
gi|394393729|gb|EJE70382.1| intramembrane serine protease GlpG [Escherichia coli O26:H11 str.
CVM10224]
gi|394404872|gb|EJE80185.1| intramembrane serine protease GlpG [Escherichia coli O26:H11 str.
CVM10021]
gi|394408645|gb|EJE83284.1| intramembrane serine protease GlpG [Escherichia coli O111:H11 str.
CVM9553]
gi|394418500|gb|EJE92174.1| intramembrane serine protease GlpG [Escherichia coli O111:H11 str.
CVM9455]
gi|394425988|gb|EJE98884.1| intramembrane serine protease GlpG [Escherichia coli O26:H11 str.
CVM10030]
gi|394430338|gb|EJF02681.1| intramembrane serine protease GlpG [Escherichia coli O26:H11 str.
CVM9952]
gi|406775693|gb|AFS55117.1| intramembrane serine protease GlpG [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407052267|gb|AFS72318.1| intramembrane serine protease GlpG [Escherichia coli O104:H4 str.
2011C-3493]
gi|407067409|gb|AFS88456.1| intramembrane serine protease GlpG [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408294203|gb|EKJ12614.1| rhomboid protease glpG [Escherichia coli EC1865]
gi|408341432|gb|EKJ55885.1| rhomboid protease glpG [Escherichia coli 0.1288]
gi|412964798|emb|CCK48727.1| protein of glp regulon [Escherichia coli chi7122]
gi|412971383|emb|CCJ46040.1| protein of glp regulon [Escherichia coli]
gi|421933308|gb|EKT91101.1| intramembrane serine protease GlpG [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421943228|gb|EKU00520.1| intramembrane serine protease GlpG [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421944280|gb|EKU01541.1| intramembrane serine protease GlpG [Escherichia coli O26:H11 str.
CFSAN001629]
gi|429346809|gb|EKY83588.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-02092]
gi|429356788|gb|EKY93463.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-02033-1]
gi|429357663|gb|EKY94336.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-02030]
gi|429372955|gb|EKZ09504.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-02093]
gi|429374896|gb|EKZ11435.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-02281]
gi|429377526|gb|EKZ14047.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-02318]
gi|429388758|gb|EKZ25183.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-02913]
gi|429391527|gb|EKZ27931.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-03439]
gi|429392536|gb|EKZ28937.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-03943]
gi|429402057|gb|EKZ38350.1| rhomboid protease glpG [Escherichia coli O104:H4 str. 11-04080]
gi|429403110|gb|EKZ39395.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-9990]
gi|429406737|gb|EKZ42992.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-9450]
gi|429414778|gb|EKZ50952.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-4984]
gi|429418248|gb|EKZ54394.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-4986]
gi|429424540|gb|EKZ60641.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-4987]
gi|429428343|gb|EKZ64419.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-4988]
gi|429433400|gb|EKZ69433.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-5603]
gi|429440360|gb|EKZ76338.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-5604]
gi|429445258|gb|EKZ81200.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec12-0465]
gi|429449199|gb|EKZ85101.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-6006]
gi|429454850|gb|EKZ90708.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec12-0466]
gi|429458957|gb|EKZ94777.1| rhomboid protease glpG [Escherichia coli O104:H4 str. Ec11-9941]
gi|430896220|gb|ELC18464.1| rhomboid protease glpG [Escherichia coli KTE12]
gi|431004344|gb|ELD19570.1| rhomboid protease glpG [Escherichia coli KTE210]
gi|431058031|gb|ELD67441.1| rhomboid protease glpG [Escherichia coli KTE234]
gi|431211512|gb|ELF09478.1| rhomboid protease glpG [Escherichia coli KTE142]
gi|431293810|gb|ELF84093.1| rhomboid protease glpG [Escherichia coli KTE29]
gi|431307402|gb|ELF95694.1| rhomboid protease glpG [Escherichia coli KTE48]
gi|431353096|gb|ELG39854.1| rhomboid protease glpG [Escherichia coli KTE91]
gi|431360295|gb|ELG46906.1| rhomboid protease glpG [Escherichia coli KTE101]
gi|431382461|gb|ELG66799.1| rhomboid protease glpG [Escherichia coli KTE136]
gi|431383109|gb|ELG67250.1| rhomboid protease glpG [Escherichia coli KTE135]
gi|431460828|gb|ELH41113.1| rhomboid protease glpG [Escherichia coli KTE184]
gi|431477298|gb|ELH57068.1| rhomboid protease glpG [Escherichia coli KTE203]
gi|431607725|gb|ELI77080.1| rhomboid protease glpG [Escherichia coli KTE138]
gi|431643748|gb|ELJ11438.1| rhomboid protease glpG [Escherichia coli KTE163]
gi|431653805|gb|ELJ20882.1| rhomboid protease glpG [Escherichia coli KTE166]
gi|431713520|gb|ELJ77754.1| rhomboid protease glpG [Escherichia coli KTE90]
gi|443423994|gb|AGC88898.1| intramembrane serine protease GlpG [Escherichia coli APEC O78]
gi|449314547|gb|EMD04713.1| intramembrane serine protease GlpG [Escherichia coli O08]
Length = 276
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|420328315|ref|ZP_14830047.1| rhomboid protease glpG, partial [Shigella flexneri CCH060]
gi|391244593|gb|EIQ03875.1| rhomboid protease glpG, partial [Shigella flexneri CCH060]
Length = 251
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 59 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 116
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 117 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 164
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 165 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 196
>gi|345000844|ref|YP_004803698.1| Rhomboid family protein [Streptomyces sp. SirexAA-E]
gi|344316470|gb|AEN11158.1| Rhomboid family protein [Streptomyces sp. SirexAA-E]
Length = 299
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 19/170 (11%)
Query: 44 ETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVL 103
E +G +R+ TS F H V H+ FNM LW LG + LG Y L L +L
Sbjct: 128 EGVAEGQWYRLFTSMFLHQEVWHIAFNMLGLWWLGGPLE---AALGRVRY----LALYLL 180
Query: 104 SGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
SGL + + + + ++G S VFG + +V D+ ++L +
Sbjct: 181 SGLAGSALTYAVSDPAQ-------GSLGASGAVFGLLGATAVLMRRMNYDMRPVIALLVV 233
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLG 213
+LIFT ++ HL G++ G +A ++H + L G
Sbjct: 234 -----NLIFTFNPWGSIAWQAHLGGLVAGVVMAIAMVHAPRAHRGLVQFG 278
>gi|384563997|ref|ZP_10011101.1| putative membrane protein [Saccharomonospora glauca K62]
gi|384519851|gb|EIE97046.1| putative membrane protein [Saccharomonospora glauca K62]
Length = 330
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQ--LGDVGLGTAYYLQYTLVLVVLSGLLVL 109
WR++TS F H +LHL NM ALW LG + LG V Y+L
Sbjct: 157 WRLLTSGFLHYGLLHLAMNMLALWVLGRDLEMLLGRVRFLAVYFLS-------------- 202
Query: 110 GIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFES 169
++ + F L TA G S ++G M + V +L+ +++ +
Sbjct: 203 -MFAGAVAVFVLGEPGTATA-GASGAIYGLMGAVLVAVLRLRLNPTTAIAIIVLN----- 255
Query: 170 LIFTSIIVPQASFLGHLSGIIVG 192
+F S+ +P S LGHL G++ G
Sbjct: 256 -VFLSMSIPNISLLGHLGGLVAG 277
>gi|212715177|ref|ZP_03323305.1| hypothetical protein BIFCAT_00066 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661858|gb|EEB22433.1| hypothetical protein BIFCAT_00066 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 264
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 91/204 (44%), Gaps = 34/204 (16%)
Query: 15 TSCIIGICSVIWFYIQKKNIGY-----SHVGLS-YETAVDGHH-WRIITSAFSH--ISVL 65
T I+ IC +W I + S VG + A+ H W ITS F H S+
Sbjct: 36 TVAIMVICVAVWIVETLLKIAWPAGYNSFVGTGVFMPALATHRPWTFITSMFLHQPASLW 95
Query: 66 HLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGL---LVLGIYHLLIQRFKL 121
H++FNM LW +G V+E++ +L Y L L VLSGL + ++ LL Q L
Sbjct: 96 HILFNMLTLWCVGPVLERMMG-------HLPY-LALYVLSGLGGSAGMMVWALLSQDGWL 147
Query: 122 EYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLS-LPISFAPFESLIFTSIIVPQA 180
+A G S +FG + V +D+ L + I+F II P
Sbjct: 148 T-----SAYGASGALFGLFASILVVYQRIGIDIRSMLIWMLINF-------LMPIITPNI 195
Query: 181 SFLGHLSGIIVGYAIAWGLIHGMN 204
++ H+ G IVG AW L+ G++
Sbjct: 196 AWQAHIGGFIVGGVFAWLLVSGLH 219
>gi|374815406|ref|ZP_09719143.1| rhomboid family protein [Treponema primitia ZAS-1]
Length = 207
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 17/184 (9%)
Query: 18 IIGICSVIWFYIQKKNIGY-SHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWS 76
IIGI +V+ + +Q+ N + S++ L+ G +W+ +T F+H + H++FNM AL+
Sbjct: 19 IIGI-NVLVYIMQRINPRFTSYLALNPILIQRGFYWQFVTYMFAHGGISHILFNMLALFI 77
Query: 77 LGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCV 135
G VE+ +G+ +L Y L +L+G L IY F Y V +G S
Sbjct: 78 FGAQVERR----MGSKEFLVYYLSTGILAGFLSFVIYW-----FTGSY--GVFLLGASGA 126
Query: 136 VFGWMTILSVKQPSSKLDLFGFLSL--PISFAPFESLIFTSIIVPQASFLGHLSGIIVGY 193
+F + P S + L+G L L PI F +L S + S + HL+ + G+
Sbjct: 127 LFAVQLAYATFFPDSVIYLWGILPLKAPIMVLGFTALELFSSVTGFRSGVAHLTH-LAGF 185
Query: 194 AIAW 197
A W
Sbjct: 186 AFGW 189
>gi|410084152|ref|XP_003959653.1| hypothetical protein KAFR_0K01640 [Kazachstania africana CBS 2517]
gi|372466245|emb|CCF60518.1| hypothetical protein KAFR_0K01640 [Kazachstania africana CBS 2517]
Length = 343
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 64/147 (43%), Gaps = 24/147 (16%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
W I+ SAFSH HL FNM ALWS G L + LGT+ + + + L L
Sbjct: 182 WSIVGSAFSHQEFWHLGFNMLALWSFGT--SLASM-LGTSNFFSLYMNSAIAGSLFSL-- 236
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
++ I R L ++G S +FG M S P++K+ LF F PI +
Sbjct: 237 WYPKIARMSLM----GPSLGASGALFGVMGCFSYLIPNAKILLFVF---PIPGGAW---- 285
Query: 172 FTSIIVPQASFLGHLSGIIVGYAIAWG 198
+FLG L+ G + WG
Sbjct: 286 --------VAFLGTLAWNTAGCVLRWG 304
>gi|332281970|ref|ZP_08394383.1| rhomboid protease glpG [Shigella sp. D9]
gi|332104322|gb|EGJ07668.1| rhomboid protease glpG [Shigella sp. D9]
Length = 276
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|357400681|ref|YP_004912606.1| hypothetical protein SCAT_3097 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|386356736|ref|YP_006054982.1| hypothetical protein SCATT_30890 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337767090|emb|CCB75801.1| conserved membrane protein of unknown function [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|365807244|gb|AEW95460.1| hypothetical protein SCATT_30890 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 282
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 19/167 (11%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
+G +R++T+ F H +V+H+ FNM +LW +G +V LG +L L LS L
Sbjct: 113 AEGQWYRLLTATFLHQNVMHIGFNMLSLWWIGPGL---EVALGRVRFLAVYL----LSAL 165
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
+ LL ++G S VFG + V + D S PI
Sbjct: 166 GGSALSFLLAN-------PNAGSLGASGAVFGLLGATFVLMRRLRYD-----SRPIVAII 213
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLG 213
+L FT + H+ G++ G +A+G++H AL G
Sbjct: 214 VLNLFFTFAQTGTIDWRAHIGGLVTGAVVAFGMVHAPRERRALVQWG 260
>gi|191167321|ref|ZP_03029138.1| peptidase, S54 (rhomboid) family [Escherichia coli B7A]
gi|193061871|ref|ZP_03042968.1| peptidase, S54 (rhomboid) family [Escherichia coli E22]
gi|193068872|ref|ZP_03049832.1| peptidase, S54 (rhomboid) family [Escherichia coli E110019]
gi|194427046|ref|ZP_03059598.1| peptidase, S54 (rhomboid) family [Escherichia coli B171]
gi|331670245|ref|ZP_08371084.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli TA271]
gi|386711303|ref|YP_006175024.1| intramembrane serine protease GlpG [Escherichia coli W]
gi|415787787|ref|ZP_11494334.1| rhomboid family protein [Escherichia coli EPECa14]
gi|417127059|ref|ZP_11974550.1| rhomboid protease GlpG [Escherichia coli 97.0246]
gi|417134512|ref|ZP_11979297.1| rhomboid protease GlpG [Escherichia coli 5.0588]
gi|417146611|ref|ZP_11987458.1| rhomboid protease GlpG [Escherichia coli 1.2264]
gi|417158159|ref|ZP_11995783.1| rhomboid protease GlpG [Escherichia coli 96.0497]
gi|417165425|ref|ZP_11999487.1| rhomboid protease GlpG [Escherichia coli 99.0741]
gi|417176314|ref|ZP_12006110.1| rhomboid protease GlpG [Escherichia coli 3.2608]
gi|417184253|ref|ZP_12009945.1| rhomboid protease GlpG [Escherichia coli 93.0624]
gi|417195659|ref|ZP_12016036.1| rhomboid protease GlpG [Escherichia coli 4.0522]
gi|417210872|ref|ZP_12021289.1| rhomboid protease GlpG [Escherichia coli JB1-95]
gi|417229177|ref|ZP_12030935.1| rhomboid protease GlpG [Escherichia coli 5.0959]
gi|417249844|ref|ZP_12041628.1| rhomboid protease GlpG [Escherichia coli 4.0967]
gi|417295910|ref|ZP_12083157.1| rhomboid protease GlpG [Escherichia coli 900105 (10e)]
gi|417604293|ref|ZP_12254857.1| rhomboid family protein [Escherichia coli STEC_94C]
gi|417641330|ref|ZP_12291460.1| rhomboid family protein [Escherichia coli TX1999]
gi|417668895|ref|ZP_12318434.1| rhomboid family protein [Escherichia coli STEC_O31]
gi|419172261|ref|ZP_13716140.1| rhomboid protease glpG [Escherichia coli DEC7A]
gi|419188444|ref|ZP_13731949.1| rhomboid family protein [Escherichia coli DEC7D]
gi|419193573|ref|ZP_13737018.1| rhomboid protease glpG [Escherichia coli DEC7E]
gi|419205375|ref|ZP_13748538.1| rhomboid family protein [Escherichia coli DEC8B]
gi|419223564|ref|ZP_13766476.1| rhomboid family protein [Escherichia coli DEC8E]
gi|419229041|ref|ZP_13771880.1| rhomboid family protein [Escherichia coli DEC9A]
gi|419234685|ref|ZP_13777452.1| rhomboid family protein [Escherichia coli DEC9B]
gi|419245483|ref|ZP_13788116.1| rhomboid family protein [Escherichia coli DEC9D]
gi|419251344|ref|ZP_13793911.1| rhomboid family protein [Escherichia coli DEC9E]
gi|419263279|ref|ZP_13805686.1| rhomboid family protein [Escherichia coli DEC10B]
gi|419286332|ref|ZP_13828494.1| rhomboid family protein [Escherichia coli DEC10F]
gi|419291606|ref|ZP_13833690.1| rhomboid family protein [Escherichia coli DEC11A]
gi|419296893|ref|ZP_13838929.1| rhomboid family protein [Escherichia coli DEC11B]
gi|419302409|ref|ZP_13844401.1| rhomboid protease glpG [Escherichia coli DEC11C]
gi|419308423|ref|ZP_13850314.1| rhomboid protease glpG [Escherichia coli DEC11D]
gi|419313446|ref|ZP_13855304.1| rhomboid protease glpG [Escherichia coli DEC11E]
gi|419318863|ref|ZP_13860660.1| rhomboid protease glpG [Escherichia coli DEC12A]
gi|419325127|ref|ZP_13866813.1| rhomboid family protein [Escherichia coli DEC12B]
gi|419331071|ref|ZP_13872666.1| rhomboid protease glpG [Escherichia coli DEC12C]
gi|419341968|ref|ZP_13883422.1| rhomboid family protein [Escherichia coli DEC12E]
gi|419347163|ref|ZP_13888533.1| rhomboid family protein [Escherichia coli DEC13A]
gi|419357096|ref|ZP_13898343.1| rhomboid family protein [Escherichia coli DEC13C]
gi|419371996|ref|ZP_13913105.1| rhomboid protease glpG [Escherichia coli DEC14A]
gi|419926802|ref|ZP_14444549.1| intramembrane serine protease GlpG [Escherichia coli 541-1]
gi|421685287|ref|ZP_16125063.1| rhomboid family protein [Shigella flexneri 1485-80]
gi|190902673|gb|EDV62405.1| peptidase, S54 (rhomboid) family [Escherichia coli B7A]
gi|192932661|gb|EDV85258.1| peptidase, S54 (rhomboid) family [Escherichia coli E22]
gi|192957948|gb|EDV88391.1| peptidase, S54 (rhomboid) family [Escherichia coli E110019]
gi|194415007|gb|EDX31277.1| peptidase, S54 (rhomboid) family [Escherichia coli B171]
gi|323154260|gb|EFZ40463.1| rhomboid family protein [Escherichia coli EPECa14]
gi|331062307|gb|EGI34227.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli TA271]
gi|345347661|gb|EGW79965.1| rhomboid family protein [Escherichia coli STEC_94C]
gi|345391354|gb|EGX21147.1| rhomboid family protein [Escherichia coli TX1999]
gi|378012999|gb|EHV75926.1| rhomboid protease glpG [Escherichia coli DEC7A]
gi|378025138|gb|EHV87785.1| rhomboid family protein [Escherichia coli DEC7D]
gi|378035952|gb|EHV98504.1| rhomboid protease glpG [Escherichia coli DEC7E]
gi|378044829|gb|EHW07239.1| rhomboid family protein [Escherichia coli DEC8B]
gi|378062005|gb|EHW24184.1| rhomboid family protein [Escherichia coli DEC8E]
gi|378069512|gb|EHW31602.1| rhomboid family protein [Escherichia coli DEC9A]
gi|378074467|gb|EHW36504.1| rhomboid family protein [Escherichia coli DEC9B]
gi|378087468|gb|EHW49328.1| rhomboid family protein [Escherichia coli DEC9D]
gi|378090725|gb|EHW52561.1| rhomboid family protein [Escherichia coli DEC9E]
gi|378102844|gb|EHW64516.1| rhomboid family protein [Escherichia coli DEC10B]
gi|378125988|gb|EHW87385.1| rhomboid family protein [Escherichia coli DEC11A]
gi|378126297|gb|EHW87692.1| rhomboid family protein [Escherichia coli DEC10F]
gi|378138722|gb|EHW99973.1| rhomboid family protein [Escherichia coli DEC11B]
gi|378144871|gb|EHX06039.1| rhomboid protease glpG [Escherichia coli DEC11D]
gi|378146980|gb|EHX08129.1| rhomboid protease glpG [Escherichia coli DEC11C]
gi|378155365|gb|EHX16424.1| rhomboid protease glpG [Escherichia coli DEC11E]
gi|378161967|gb|EHX22935.1| rhomboid family protein [Escherichia coli DEC12B]
gi|378165760|gb|EHX26690.1| rhomboid protease glpG [Escherichia coli DEC12A]
gi|378166697|gb|EHX27618.1| rhomboid protease glpG [Escherichia coli DEC12C]
gi|378183573|gb|EHX44215.1| rhomboid family protein [Escherichia coli DEC12E]
gi|378183875|gb|EHX44516.1| rhomboid family protein [Escherichia coli DEC13A]
gi|378196584|gb|EHX57070.1| rhomboid family protein [Escherichia coli DEC13C]
gi|378213623|gb|EHX73935.1| rhomboid protease glpG [Escherichia coli DEC14A]
gi|383406995|gb|AFH13238.1| intramembrane serine protease GlpG [Escherichia coli W]
gi|386144362|gb|EIG90828.1| rhomboid protease GlpG [Escherichia coli 97.0246]
gi|386152366|gb|EIH03655.1| rhomboid protease GlpG [Escherichia coli 5.0588]
gi|386162551|gb|EIH24347.1| rhomboid protease GlpG [Escherichia coli 1.2264]
gi|386166909|gb|EIH33429.1| rhomboid protease GlpG [Escherichia coli 96.0497]
gi|386172405|gb|EIH44435.1| rhomboid protease GlpG [Escherichia coli 99.0741]
gi|386179006|gb|EIH56485.1| rhomboid protease GlpG [Escherichia coli 3.2608]
gi|386183815|gb|EIH66562.1| rhomboid protease GlpG [Escherichia coli 93.0624]
gi|386189177|gb|EIH77944.1| rhomboid protease GlpG [Escherichia coli 4.0522]
gi|386195476|gb|EIH89711.1| rhomboid protease GlpG [Escherichia coli JB1-95]
gi|386208512|gb|EII13017.1| rhomboid protease GlpG [Escherichia coli 5.0959]
gi|386220165|gb|EII36629.1| rhomboid protease GlpG [Escherichia coli 4.0967]
gi|386259354|gb|EIJ14828.1| rhomboid protease GlpG [Escherichia coli 900105 (10e)]
gi|388408822|gb|EIL69154.1| intramembrane serine protease GlpG [Escherichia coli 541-1]
gi|397783426|gb|EJK94285.1| rhomboid family protein [Escherichia coli STEC_O31]
gi|404334775|gb|EJZ61251.1| rhomboid family protein [Shigella flexneri 1485-80]
Length = 274
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 82 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 140 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 188 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 219
>gi|389759371|ref|ZP_10191765.1| hypothetical protein UU5_18447 [Rhodanobacter sp. 115]
gi|388430478|gb|EIL87642.1| hypothetical protein UU5_18447 [Rhodanobacter sp. 115]
Length = 221
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 20/149 (13%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W+++T AF H H++FNM AL+ G +EQ G +++ Y V +++ L L
Sbjct: 64 WQVVTYAFMHGGFTHILFNMFALYMFGGAIEQT----FGARHFVIYYFVCAIVAALAQL- 118
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP-------IS 163
L+++ F ++ +G S +FG + + P K+ L FL +P I
Sbjct: 119 ---LVVKYFTHGFY---PTIGASGAIFGLLLAFGMLYPQEKVMLL-FLPVPMPAWLFVIG 171
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+A E + + + HL G++ G
Sbjct: 172 YAAVELFMGVTGTEAGVAHFAHLGGMVGG 200
>gi|117927224|ref|YP_871775.1| rhomboid family protein [Acidothermus cellulolyticus 11B]
gi|117647687|gb|ABK51789.1| Rhomboid family protein [Acidothermus cellulolyticus 11B]
Length = 287
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 71/164 (43%), Gaps = 23/164 (14%)
Query: 33 NIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAY 92
G++H Y G +R+IT+ F H SVLH+VFNM W+L VV + LG
Sbjct: 108 ETGFAH---PYAGVAGGEFYRLITAMFLHASVLHIVFNM---WALLVVGAPLEALLGRLR 161
Query: 93 YLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKL 152
+ LVL L+GL +L R +G S +FG L V
Sbjct: 162 F----LVLYFLAGLGGSTAVYLFAPRGS-------ATLGASGAIFGLFAALFVFGRRLNF 210
Query: 153 DLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
D+ PI +L T ++ S+ GH+ G++ G A+A
Sbjct: 211 DI-----RPIGLVIVINLALT-FVLSGVSWQGHIGGLLSGGALA 248
>gi|425290573|ref|ZP_18681392.1| rhomboid protease glpG [Escherichia coli 3006]
gi|408210107|gb|EKI34680.1| rhomboid protease glpG [Escherichia coli 3006]
Length = 276
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|448088893|ref|XP_004196660.1| Piso0_003885 [Millerozyma farinosa CBS 7064]
gi|448093058|ref|XP_004197691.1| Piso0_003885 [Millerozyma farinosa CBS 7064]
gi|359378082|emb|CCE84341.1| Piso0_003885 [Millerozyma farinosa CBS 7064]
gi|359379113|emb|CCE83310.1| Piso0_003885 [Millerozyma farinosa CBS 7064]
Length = 283
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 130 VGYSCVVFGWMTILSVKQPSSKLDLFGF------LSLPISFAPFESLIFTSIIVPQASFL 183
+G S VVF +++ + K+ K L+ + +++P ++PF L +II+P +S L
Sbjct: 131 IGLSGVVFSFLSYFAYKEHQYKPILYTYQFQGRTVNIPTLYSPFIVLAICAIILPSSSIL 190
Query: 184 GHLSGIIVGYAIA 196
GHL+G+ GY +A
Sbjct: 191 GHLAGVSSGYLLA 203
>gi|325106150|ref|YP_004275804.1| rhomboid family protein [Pedobacter saltans DSM 12145]
gi|324974998|gb|ADY53982.1| Rhomboid family protein [Pedobacter saltans DSM 12145]
Length = 250
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 39 VGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYT 97
+GL Y + + W+I T F H ++H+ NM ALW G V+E LG+ +LQY
Sbjct: 45 LGLYYFESPNFRIWQIFTHLFMHGDIMHIFSNMLALWMFGSVLENY----LGSKRFLQYY 100
Query: 98 LVLVVLSGLLVLGIYHLLIQRFK 120
++ + + L LG+ ++ +Q K
Sbjct: 101 IITGLGAACLHLGVQYVEVQALK 123
>gi|261402576|ref|YP_003246800.1| rhomboid family protein [Methanocaldococcus vulcanius M7]
gi|261369569|gb|ACX72318.1| Rhomboid family protein [Methanocaldococcus vulcanius M7]
Length = 222
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 22/183 (12%)
Query: 18 IIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSL 77
IIGIC V++ + Y + L Y W++ITS F H ++ HL+ NM L+
Sbjct: 21 IIGICVVMFILSKIFPQMYLYFAL-YPNMAFSMPWQLITSIFMHATITHLLLNMFVLFFF 79
Query: 78 GV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVV 136
G +E+L +G Y +LV L +V + ++L Y + +VG S +
Sbjct: 80 GTYLERL----IGAKKY-----ILVFLISGIVGNLAYILYCHITGSY---LPSVGSSGAI 127
Query: 137 FGWMTILSVKQPSSKLDLFGFLSLPIS-------FAPFESLIFTSIIVPQASFLGHLSGI 189
FG M L++ P K+ +F + +PIS FA + ++ + + HL+G+
Sbjct: 128 FGVMGALAILHPRLKVVIFP-IPVPISIRVAVGLFALIDLILLPYTFKTGIAHISHLAGL 186
Query: 190 IVG 192
+ G
Sbjct: 187 LTG 189
>gi|420338855|ref|ZP_14840408.1| rhomboid protease glpG [Shigella flexneri K-315]
gi|391257577|gb|EIQ16689.1| rhomboid protease glpG [Shigella flexneri K-315]
Length = 276
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|336122688|ref|YP_004564736.1| Integral membrane protein (Rhomboid family) [Vibrio anguillarum
775]
gi|335340411|gb|AEH31694.1| Integral membrane protein (Rhomboid family) [Vibrio anguillarum
775]
Length = 277
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRI---ITSAFSHISVLHLVF 69
P T ++ +C++I F +Q+ + + A+ G W+I + A H SVLH+VF
Sbjct: 98 PLTLGVMMVCAII-FALQQFGLANQVFSALHFPALAGQQWQIWRWFSHALLHFSVLHIVF 156
Query: 70 NMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSG 105
N+ W LG V ++LG LG Q LV +LSG
Sbjct: 157 NLLWWWQLGGDVEKRLGSFKLG-----QLFLVSALLSG 189
>gi|411116458|ref|ZP_11388945.1| putative membrane protein [Oscillatoriales cyanobacterium JSC-12]
gi|410712561|gb|EKQ70062.1| putative membrane protein [Oscillatoriales cyanobacterium JSC-12]
Length = 518
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 68/170 (40%), Gaps = 33/170 (19%)
Query: 36 YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQ 95
Y L E G WR I + F H ++HL+ NM L+ G L + LG +L
Sbjct: 355 YQMGALVPENVFAGEWWRAIAAIFLHHGIVHLLTNMLGLYVFGA---LAEAALGRKKFLI 411
Query: 96 YTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFG-------------WMTI 142
V S L V+ + L +L VG S V G W+
Sbjct: 412 TYFFTGVGSMLAVVFVSTLTNSTTQL-------TVGASGAVLGMVGAEGAIQLKGWWVEK 464
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ Q +L L G + + +F+ +I PQ S +GHLSG+I+G
Sbjct: 465 AKIAQ--ERLRLIGIIMI--------LQLFSDLITPQVSIVGHLSGMILG 504
>gi|410096061|ref|ZP_11291051.1| hypothetical protein HMPREF1076_00229 [Parabacteroides goldsteinii
CL02T12C30]
gi|409227132|gb|EKN20033.1| hypothetical protein HMPREF1076_00229 [Parabacteroides goldsteinii
CL02T12C30]
Length = 197
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 41 LSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTL 98
+ Y T +R+IT F H + HL+ NM WS G + + G +G GT +L
Sbjct: 30 IPYRTVKKNEWYRLITHGFVHADMTHLLVNMFTFWSFGTYIEKVFGYLGFGTWGFLG--- 86
Query: 99 VLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVG-YSCVVFGWMTILSVKQPSSKLDLFGF 157
+ G++ IY L++ Y+ + A G S ++F ++ P SK+ LF
Sbjct: 87 --LYFGGMIFASIYD-LVKHHNDPYYVSIGASGAVSAILFSYILF----DPWSKILLFAI 139
Query: 158 LSLP 161
+ +P
Sbjct: 140 IPVP 143
>gi|284162630|ref|YP_003401253.1| rhomboid family protein [Archaeoglobus profundus DSM 5631]
gi|284012627|gb|ADB58580.1| Rhomboid family protein [Archaeoglobus profundus DSM 5631]
Length = 225
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 27/152 (17%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVV--LSGLL 107
W+IITS F H HL NM L+ G + +LG+ +Y ++ ++G L
Sbjct: 73 WQIITSIFVHADFWHLFINMFVLFFFGNELERRLGE--------RKYLIIFFASGIAGNL 124
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS---- 163
+Y L F + A+G S +FG M L++ P ++ +F L +P+S
Sbjct: 125 AYLVYAFLTNPF-------IPAMGASAAIFGVMGALAIIAPEIRVVIFP-LPIPVSIKVA 176
Query: 164 ---FAPFESLIFTSIIVPQASFLGHLSGIIVG 192
FA ++ L+ + + HL+G++VG
Sbjct: 177 ILLFAIYDLLLLPFSYSTGVAHIAHLAGLLVG 208
>gi|197286757|ref|YP_002152629.1| intramembrane serine protease GlpG [Proteus mirabilis HI4320]
gi|227355052|ref|ZP_03839463.1| intramembrane serine protease GlpG [Proteus mirabilis ATCC 29906]
gi|425069511|ref|ZP_18472626.1| rhomboid family protease GlpG [Proteus mirabilis WGLW6]
gi|425070966|ref|ZP_18474072.1| rhomboid family protease GlpG [Proteus mirabilis WGLW4]
gi|194684244|emb|CAR45766.1| putative membrane protein [Proteus mirabilis HI4320]
gi|227164839|gb|EEI49686.1| intramembrane serine protease GlpG [Proteus mirabilis ATCC 29906]
gi|404596937|gb|EKA97444.1| rhomboid family protease GlpG [Proteus mirabilis WGLW6]
gi|404599791|gb|EKB00244.1| rhomboid family protease GlpG [Proteus mirabilis WGLW4]
Length = 279
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 13 PATSCIIGICSVIWFYIQKKNIG-YS---HVGLSYETAVDGHHWRIITSAFSHISVLHLV 68
P T I +C ++ +I ++ +G Y+ H+ Y+ ++D WR IT AF H S++H+
Sbjct: 97 PLTVLTIILCVLV--FIWQQIVGDYNVMLHLAWPYDASLDFELWRYITPAFVHFSLMHIA 154
Query: 69 FNMSALWSLG--VVEQLG 84
FN++ W L +QLG
Sbjct: 155 FNLAMWWYLASQTEKQLG 172
>gi|217077443|ref|YP_002335161.1| integral membrane protein, Rhomboid family [Thermosipho africanus
TCF52B]
gi|217037298|gb|ACJ75820.1| integral membrane protein, Rhomboid family [Thermosipho africanus
TCF52B]
Length = 223
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 26/203 (12%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAF 59
M R FY ++ I+ + + F+I + + Y G Y V W RI+TS F
Sbjct: 1 MKRESFYYLIF--VNVLILFLIEIFKFFIPNEAVLYLMFGAQYGPLVSHGQWFRIVTSMF 58
Query: 60 SHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR 118
H +HL+FNM AL+ LG +VE + GT +L + LSG+ + +L Q
Sbjct: 59 VHGGFIHLIFNMYALFFLGRIVENV----YGTEKFLTFYF----LSGI----VGNLATQI 106
Query: 119 FKLEYFRRVTAVGYSCVVFGWMTIL-----SVKQPSSKLDLFGFLSLPISFAPFESLIFT 173
F F +VG S +FG + +L P S + G LP+ I
Sbjct: 107 FYYNSF----SVGASGAIFGLIGVLFAAGFRKDTPYSLKPITGSALLPMIVINIIFGIMP 162
Query: 174 SIIVPQASFL-GHLSGIIVGYAI 195
+ A+ + G L+G+++GY I
Sbjct: 163 GTNINNAAHIGGFLTGMLLGYMI 185
>gi|380510776|ref|ZP_09854183.1| hypothetical protein XsacN4_06161 [Xanthomonas sacchari NCPPB 4393]
Length = 218
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 17/160 (10%)
Query: 42 SYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVL 100
++ + W+++T F H S HL+FNM AL+ G +EQ G +L Y LV
Sbjct: 44 AFSPGENFQLWQLLTYGFLHGSFSHLLFNMLALYMFGGPLEQT----WGNKRFLTYYLVC 99
Query: 101 VVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSL 160
VV +GL L + ++ Y +G S +FG + + P+ ++ L F +
Sbjct: 100 VVGAGLCQLLVGWWMLSNGNAPY----PTLGASGGIFGLLLAFGMLFPNQRVVLL-FPPI 154
Query: 161 P-------ISFAPFESLIFTSIIVPQASFLGHLSGIIVGY 193
P I F E L+ + P + HL G++ G+
Sbjct: 155 PMKARTFVIVFGALELLMGFTGWQPGVAHFAHLGGMLFGW 194
>gi|331674910|ref|ZP_08375667.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli TA280]
gi|331067819|gb|EGI39217.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli TA280]
Length = 276
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACMVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|253690291|ref|YP_003019481.1| Rhomboid protease [Pectobacterium carotovorum subsp. carotovorum
PC1]
gi|251756869|gb|ACT14945.1| Rhomboid protease [Pectobacterium carotovorum subsp. carotovorum
PC1]
Length = 277
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 29/203 (14%)
Query: 3 RPLFYEIMEKPATSCIIGICSV-IWFYIQKKNIGYSHVGLSYETAVDGHH---WRIITSA 58
R F + +++ A + + V I +I + GY V +G WR + A
Sbjct: 84 RYSFLQTLKQKAGPLTLSVMVVTIAVFILMQISGYESVMTWLAFPAEGQQLQLWRWFSHA 143
Query: 59 FSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQ 117
H S+LH++FN+ W L G VE++ LGT L TLV ++SG
Sbjct: 144 LLHFSLLHILFNLMWWWYLGGPVEKV----LGTGKLLVITLVSALVSGWAQ--------S 191
Query: 118 RFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTS--- 174
F YF ++ V Y+ + + W+ ++P G+LS+P S F L +
Sbjct: 192 WFSGTYFGGLSGVVYALMGYVWLR--GEREPD------GYLSMPRSLMAFALLWLVAGYF 243
Query: 175 -IIVPQASFLGHLSGIIVGYAIA 196
I+ + H++G+IVG +A
Sbjct: 244 DILGMSIANAAHVAGLIVGLLMA 266
>gi|359425053|ref|ZP_09216156.1| rhomboid family protein [Gordonia amarae NBRC 15530]
gi|358239633|dbj|GAB05738.1| rhomboid family protein [Gordonia amarae NBRC 15530]
Length = 299
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 29/179 (16%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
DG +WR++T+ F H S+ H+ NM +L+ LG D+ L Y + L L G
Sbjct: 117 DGEYWRLLTAGFLHFSLTHIAANMLSLFLLGR-----DLELAIGYPRYAGVYLASLVG-- 169
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
+ F + A G + G M ++ ++ +S + + + L I
Sbjct: 170 ----GSAAVMLFAGDLTINAGASGAIYGLMGAMLVIVLRMRASPVPVLSIIGLNIVL--- 222
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH--------GMNNYWALSMLGWIVLV 218
SI VP S HL G++ G GLI+ G A S+LGW V+
Sbjct: 223 ------SITVPGISLAAHLGGLLFGALATAGLIYLPQVAGDRGRTPAGA-SLLGWAVIA 274
>gi|365538131|ref|ZP_09363306.1| Integral membrane protein (Rhomboid family) [Vibrio ordalii ATCC
33509]
Length = 277
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRI---ITSAFSHISVLHLVF 69
P T ++ +C++I F +Q+ + + A+ G W+I + A H SVLH+VF
Sbjct: 98 PLTLGVMMVCTII-FALQQFGLANQVFSALHFPALAGQQWQIWRWFSHALLHFSVLHIVF 156
Query: 70 NMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSG 105
N+ W LG V ++LG LG Q LV +LSG
Sbjct: 157 NLLWWWQLGGDVEKRLGSFKLG-----QLFLVSALLSG 189
>gi|365827061|ref|ZP_09368936.1| hypothetical protein HMPREF0975_00719 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365265470|gb|EHM95232.1| hypothetical protein HMPREF0975_00719 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 279
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 71/149 (47%), Gaps = 17/149 (11%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
G WR +T+AF H + +HL FNM ALW L G +E + TA YL L L G
Sbjct: 110 GEPWRFLTTAFLHANYMHLGFNMWALWVLGGSLEPVLGRWRFTAVYL-----LSALGG-- 162
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
IY L + + +T VG S VFG + + V Q D G ++L ++
Sbjct: 163 STAIYWLSWP--DTDAWGTMT-VGASGAVFGLFSTMFVVQRRFGRDTSGIVAL-LAINAV 218
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
S + +I S+ GHL G+IVG +A
Sbjct: 219 ISFLGANI-----SWQGHLGGLIVGGIVA 242
>gi|117618367|ref|YP_854633.1| GlpG protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
gi|117559774|gb|ABK36722.1| GlpG protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
Length = 277
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 67/156 (42%), Gaps = 25/156 (16%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSG 105
D WR T AF H SVLHLVFN+ W L G +EQ LG+ L LV L
Sbjct: 134 TDWQAWRYFTPAFIHFSVLHLVFNLLWWWYLGGQIEQ----RLGSGKLLILLLVGAALPN 189
Query: 106 LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165
L L F ++ V Y+ + + W+ SKL L+LP +
Sbjct: 190 LAEFFASGPL--------FGGLSGVVYALLGYCWL--------RSKLQPACGLTLPPALM 233
Query: 166 PFE----SLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
F +L F ++ + + + HL+G++VG W
Sbjct: 234 GFMLFWLALGFFDLLGTRTANMAHLAGLLVGLLQGW 269
>gi|450193860|ref|ZP_21892171.1| intramembrane serine protease GlpG [Escherichia coli SEPT362]
gi|449317096|gb|EMD07190.1| intramembrane serine protease GlpG [Escherichia coli SEPT362]
Length = 276
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|389774391|ref|ZP_10192510.1| hypothetical protein UU7_01252 [Rhodanobacter spathiphylli B39]
gi|388437990|gb|EIL94745.1| hypothetical protein UU7_01252 [Rhodanobacter spathiphylli B39]
Length = 204
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W+I+TSAF H S+ H+ FNM AL+ G +E+ G + Y V + + LL L
Sbjct: 47 WQIVTSAFMHGSLTHIAFNMIALYMFGGTIERT----FGARNFTLYYFVCAISASLLQLA 102
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS------- 163
+ + +G S +FG + V P K+ L FL +P+
Sbjct: 103 VLWFFPGQVG-------PTLGASGAIFGLLLAFGVLYPQEKVMLI-FLPIPMPAWLFVSL 154
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+A E + + I P + HL G++ G
Sbjct: 155 YAAAELTMGVTGIEPGVAHFAHLGGMLGG 183
>gi|218691699|ref|YP_002399911.1| intramembrane serine protease GlpG [Escherichia coli ED1a]
gi|254798883|sp|B7N156.1|GLPG_ECO81 RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|218429263|emb|CAR10074.1| putative intramembrane serine protease [Escherichia coli ED1a]
Length = 276
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|411011379|ref|ZP_11387708.1| GlpG protein [Aeromonas aquariorum AAK1]
gi|423198992|ref|ZP_17185575.1| hypothetical protein HMPREF1171_03607 [Aeromonas hydrophila SSU]
gi|404629651|gb|EKB26394.1| hypothetical protein HMPREF1171_03607 [Aeromonas hydrophila SSU]
Length = 277
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 67/156 (42%), Gaps = 25/156 (16%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSG 105
D WR T AF H SVLHLVFN+ W L G +EQ LG+ L LV L
Sbjct: 134 TDWQAWRYFTPAFIHFSVLHLVFNLLWWWYLGGQIEQ----RLGSGKLLILLLVGAALPN 189
Query: 106 LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165
L L F ++ V Y+ + + W+ SKL L+LP +
Sbjct: 190 LAEFFASGPL--------FGGLSGVVYALLGYCWL--------RSKLQPACGLTLPPALM 233
Query: 166 PFE----SLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
F +L F ++ + + + HL+G++VG W
Sbjct: 234 GFMLFWLALGFFDLLGTRTANMAHLAGLLVGLLQGW 269
>gi|110807258|ref|YP_690778.1| intramembrane serine protease GlpG [Shigella flexneri 5 str. 8401]
gi|424839641|ref|ZP_18264278.1| intramembrane serine protease GlpG [Shigella flexneri 5a str. M90T]
gi|110616806|gb|ABF05473.1| protein of glp regulon [Shigella flexneri 5 str. 8401]
gi|383468693|gb|EID63714.1| intramembrane serine protease GlpG [Shigella flexneri 5a str. M90T]
Length = 257
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 65 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 122
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 123 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 170
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 171 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 202
>gi|26250025|ref|NP_756065.1| intramembrane serine protease GlpG [Escherichia coli CFT073]
gi|49176353|ref|YP_026220.1| rhomboid intramembrane serine protease [Escherichia coli str. K-12
substr. MG1655]
gi|91212898|ref|YP_542884.1| intramembrane serine protease GlpG [Escherichia coli UTI89]
gi|110643656|ref|YP_671386.1| intramembrane serine protease GlpG [Escherichia coli 536]
gi|117625688|ref|YP_859011.1| intramembrane serine protease GlpG [Escherichia coli APEC O1]
gi|157162901|ref|YP_001460219.1| intramembrane serine protease GlpG [Escherichia coli HS]
gi|170018341|ref|YP_001723295.1| intramembrane serine protease GlpG [Escherichia coli ATCC 8739]
gi|170082939|ref|YP_001732259.1| intramembrane serine protease GlpG [Escherichia coli str. K-12
substr. DH10B]
gi|170683698|ref|YP_001745671.1| intramembrane serine protease GlpG [Escherichia coli SMS-3-5]
gi|194435662|ref|ZP_03067765.1| peptidase, S54 (rhomboid) family [Escherichia coli 101-1]
gi|215488704|ref|YP_002331135.1| intramembrane serine protease GlpG [Escherichia coli O127:H6 str.
E2348/69]
gi|218560480|ref|YP_002393393.1| intramembrane serine protease GlpG [Escherichia coli S88]
gi|218707014|ref|YP_002414533.1| intramembrane serine protease GlpG [Escherichia coli UMN026]
gi|222158119|ref|YP_002558258.1| Protein glpG [Escherichia coli LF82]
gi|227883558|ref|ZP_04001363.1| intramembrane serine protease GlpG [Escherichia coli 83972]
gi|237703155|ref|ZP_04533636.1| rhomboid protease glpG [Escherichia sp. 3_2_53FAA]
gi|238902517|ref|YP_002928313.1| intramembrane serine protease GlpG [Escherichia coli BW2952]
gi|251786673|ref|YP_003000977.1| intramembrane serine protease GlpG [Escherichia coli BL21(DE3)]
gi|253771747|ref|YP_003034578.1| intramembrane serine protease GlpG [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254163351|ref|YP_003046459.1| intramembrane serine protease GlpG [Escherichia coli B str. REL606]
gi|254290101|ref|YP_003055849.1| intramembrane serine protease [Escherichia coli BL21(DE3)]
gi|293407001|ref|ZP_06650925.1| intramembrane serine protease GlpG [Escherichia coli FVEC1412]
gi|293412841|ref|ZP_06655509.1| conserved hypothetical protein [Escherichia coli B354]
gi|298382743|ref|ZP_06992338.1| rhomboid protease glpG [Escherichia coli FVEC1302]
gi|300898885|ref|ZP_07117188.1| peptidase, S54 family protein [Escherichia coli MS 198-1]
gi|300931041|ref|ZP_07146398.1| peptidase, S54 family protein [Escherichia coli MS 187-1]
gi|300985297|ref|ZP_07177394.1| peptidase, S54 family protein [Escherichia coli MS 45-1]
gi|300987310|ref|ZP_07178118.1| peptidase, S54 family protein [Escherichia coli MS 200-1]
gi|301019553|ref|ZP_07183716.1| peptidase, S54 family protein [Escherichia coli MS 69-1]
gi|301050364|ref|ZP_07197253.1| peptidase, S54 family protein [Escherichia coli MS 185-1]
gi|301645865|ref|ZP_07245779.1| peptidase, S54 family protein [Escherichia coli MS 146-1]
gi|312968264|ref|ZP_07782474.1| rhomboid family protein [Escherichia coli 2362-75]
gi|312972313|ref|ZP_07786487.1| rhomboid family protein [Escherichia coli 1827-70]
gi|331644124|ref|ZP_08345253.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli H736]
gi|331655004|ref|ZP_08356003.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli M718]
gi|331665029|ref|ZP_08365930.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli TA143]
gi|386282910|ref|ZP_10060550.1| rhomboid protease glpG [Escherichia sp. 4_1_40B]
gi|386593869|ref|YP_006090269.1| rhomboid family protein [Escherichia coli DH1]
gi|386601437|ref|YP_006102943.1| peptidase, S54 (rhomboid) family [Escherichia coli IHE3034]
gi|386616207|ref|YP_006135873.1| hypothetical protein UMNK88_4191 [Escherichia coli UMNK88]
gi|386631307|ref|YP_006151027.1| intramembrane serine protease GlpG [Escherichia coli str. 'clone D
i2']
gi|386636227|ref|YP_006155946.1| intramembrane serine protease GlpG [Escherichia coli str. 'clone D
i14']
gi|386641017|ref|YP_006107815.1| inner membrane-associated protein of glp regulon [Escherichia coli
ABU 83972]
gi|386706667|ref|YP_006170514.1| Rhomboid protease glpG [Escherichia coli P12b]
gi|387609115|ref|YP_006097971.1| hypothetical protein EC042_3684 [Escherichia coli 042]
gi|387614097|ref|YP_006117213.1| hypothetical protein ETEC_3673 [Escherichia coli ETEC H10407]
gi|387618710|ref|YP_006121732.1| intramembrane serine protease GlpG [Escherichia coli O83:H1 str.
NRG 857C]
gi|387623075|ref|YP_006130703.1| intramembrane serine protease GlpG [Escherichia coli DH1]
gi|388479815|ref|YP_492009.1| intramembrane serine protease [Escherichia coli str. K-12 substr.
W3110]
gi|404376796|ref|ZP_10981948.1| rhomboid protease glpG [Escherichia sp. 1_1_43]
gi|415779658|ref|ZP_11490299.1| rhomboid family protein [Escherichia coli 3431]
gi|416899799|ref|ZP_11929205.1| rhomboid family protein [Escherichia coli STEC_7v]
gi|417271261|ref|ZP_12058610.1| rhomboid protease GlpG [Escherichia coli 2.4168]
gi|417276182|ref|ZP_12063514.1| rhomboid protease GlpG [Escherichia coli 3.2303]
gi|417615024|ref|ZP_12265477.1| rhomboid family protein [Escherichia coli STEC_EH250]
gi|417636517|ref|ZP_12286726.1| rhomboid family protein [Escherichia coli STEC_S1191]
gi|417674721|ref|ZP_12324154.1| rhomboid family protein [Shigella dysenteriae 155-74]
gi|417945183|ref|ZP_12588419.1| intramembrane serine protease GlpG [Escherichia coli XH140A]
gi|417977010|ref|ZP_12617798.1| intramembrane serine protease GlpG [Escherichia coli XH001]
gi|418956186|ref|ZP_13508114.1| rhomboid family protein [Escherichia coli J53]
gi|419009802|ref|ZP_13557220.1| rhomboid family protein [Escherichia coli DEC1C]
gi|419020433|ref|ZP_13567731.1| rhomboid family protein [Escherichia coli DEC1E]
gi|419025898|ref|ZP_13573116.1| rhomboid protease glpG [Escherichia coli DEC2A]
gi|419036613|ref|ZP_13583688.1| rhomboid family protein [Escherichia coli DEC2D]
gi|419150561|ref|ZP_13695209.1| rhomboid family protein [Escherichia coli DEC6B]
gi|419155900|ref|ZP_13700456.1| rhomboid protease glpG [Escherichia coli DEC6C]
gi|419161241|ref|ZP_13705737.1| rhomboid protease glpG [Escherichia coli DEC6D]
gi|419702246|ref|ZP_14229841.1| intramembrane serine protease GlpG [Escherichia coli SCI-07]
gi|419811672|ref|ZP_14336545.1| intramembrane serine protease GlpG [Escherichia coli O32:H37 str.
P4]
gi|419912351|ref|ZP_14430806.1| intramembrane serine protease GlpG [Escherichia coli KD1]
gi|422333760|ref|ZP_16414769.1| rhomboid protease glpG [Escherichia coli 4_1_47FAA]
gi|422360123|ref|ZP_16440760.1| peptidase, S54 family protein [Escherichia coli MS 110-3]
gi|422365613|ref|ZP_16446106.1| peptidase, S54 family protein [Escherichia coli MS 153-1]
gi|422372294|ref|ZP_16452659.1| peptidase, S54 family protein [Escherichia coli MS 16-3]
gi|422374078|ref|ZP_16454372.1| peptidase, S54 family protein [Escherichia coli MS 60-1]
gi|422379368|ref|ZP_16459564.1| peptidase, S54 family protein [Escherichia coli MS 57-2]
gi|422773452|ref|ZP_16827136.1| rhomboid family protein [Escherichia coli E482]
gi|422788685|ref|ZP_16841420.1| rhomboid family protein [Escherichia coli H489]
gi|422801346|ref|ZP_16849842.1| rhomboid family protein [Escherichia coli M863]
gi|422818583|ref|ZP_16866795.1| rhomboid protease glpG [Escherichia coli M919]
gi|422830450|ref|ZP_16878608.1| rhomboid protease glpG [Escherichia coli B093]
gi|422841428|ref|ZP_16889397.1| rhomboid protease glpG [Escherichia coli H397]
gi|423702925|ref|ZP_17677357.1| rhomboid protease glpG [Escherichia coli H730]
gi|424817946|ref|ZP_18243097.1| intramembrane serine protease GlpG [Escherichia fergusonii ECD227]
gi|425116986|ref|ZP_18518771.1| rhomboid family protease GlpG [Escherichia coli 8.0566]
gi|425274623|ref|ZP_18666018.1| rhomboid protease glpG [Escherichia coli TW15901]
gi|425285202|ref|ZP_18676229.1| rhomboid protease glpG [Escherichia coli TW00353]
gi|425307213|ref|ZP_18696889.1| rhomboid protease glpG [Escherichia coli N1]
gi|432355399|ref|ZP_19598666.1| rhomboid protease glpG [Escherichia coli KTE2]
gi|432359868|ref|ZP_19603081.1| rhomboid protease glpG [Escherichia coli KTE4]
gi|432364665|ref|ZP_19607820.1| rhomboid protease glpG [Escherichia coli KTE5]
gi|432366871|ref|ZP_19609988.1| rhomboid protease glpG [Escherichia coli KTE10]
gi|432403774|ref|ZP_19646518.1| rhomboid protease glpG [Escherichia coli KTE26]
gi|432418945|ref|ZP_19661538.1| rhomboid protease glpG [Escherichia coli KTE44]
gi|432428035|ref|ZP_19670518.1| rhomboid protease glpG [Escherichia coli KTE181]
gi|432433631|ref|ZP_19676055.1| rhomboid protease glpG [Escherichia coli KTE187]
gi|432462739|ref|ZP_19704872.1| rhomboid protease glpG [Escherichia coli KTE204]
gi|432467731|ref|ZP_19709809.1| rhomboid protease glpG [Escherichia coli KTE205]
gi|432472768|ref|ZP_19714805.1| rhomboid protease glpG [Escherichia coli KTE206]
gi|432477733|ref|ZP_19719722.1| rhomboid protease glpG [Escherichia coli KTE208]
gi|432487182|ref|ZP_19729090.1| rhomboid protease glpG [Escherichia coli KTE212]
gi|432491180|ref|ZP_19733043.1| rhomboid protease glpG [Escherichia coli KTE213]
gi|432519593|ref|ZP_19756772.1| rhomboid protease glpG [Escherichia coli KTE228]
gi|432539751|ref|ZP_19776644.1| rhomboid protease glpG [Escherichia coli KTE235]
gi|432555504|ref|ZP_19792222.1| rhomboid protease glpG [Escherichia coli KTE47]
gi|432565789|ref|ZP_19802349.1| rhomboid protease glpG [Escherichia coli KTE51]
gi|432575652|ref|ZP_19812123.1| rhomboid protease glpG [Escherichia coli KTE55]
gi|432577650|ref|ZP_19814099.1| rhomboid protease glpG [Escherichia coli KTE56]
gi|432584945|ref|ZP_19821336.1| rhomboid protease glpG [Escherichia coli KTE57]
gi|432589797|ref|ZP_19826149.1| rhomboid protease glpG [Escherichia coli KTE58]
gi|432599667|ref|ZP_19835937.1| rhomboid protease glpG [Escherichia coli KTE62]
gi|432604243|ref|ZP_19840473.1| rhomboid protease glpG [Escherichia coli KTE66]
gi|432629051|ref|ZP_19865019.1| rhomboid protease glpG [Escherichia coli KTE77]
gi|432633271|ref|ZP_19869191.1| rhomboid protease glpG [Escherichia coli KTE80]
gi|432642961|ref|ZP_19878786.1| rhomboid protease glpG [Escherichia coli KTE83]
gi|432662630|ref|ZP_19898264.1| rhomboid protease glpG [Escherichia coli KTE111]
gi|432667958|ref|ZP_19903530.1| rhomboid protease glpG [Escherichia coli KTE116]
gi|432672508|ref|ZP_19908031.1| rhomboid protease glpG [Escherichia coli KTE119]
gi|432687239|ref|ZP_19922529.1| rhomboid protease glpG [Escherichia coli KTE156]
gi|432688693|ref|ZP_19923963.1| rhomboid protease glpG [Escherichia coli KTE161]
gi|432706156|ref|ZP_19941251.1| rhomboid protease glpG [Escherichia coli KTE171]
gi|432715273|ref|ZP_19950299.1| rhomboid protease glpG [Escherichia coli KTE8]
gi|432720541|ref|ZP_19955505.1| rhomboid protease glpG [Escherichia coli KTE9]
gi|432747397|ref|ZP_19982058.1| rhomboid protease glpG [Escherichia coli KTE43]
gi|432756347|ref|ZP_19990891.1| rhomboid protease glpG [Escherichia coli KTE22]
gi|432767769|ref|ZP_20002162.1| rhomboid protease glpG [Escherichia coli KTE50]
gi|432772152|ref|ZP_20006466.1| rhomboid protease glpG [Escherichia coli KTE54]
gi|432780427|ref|ZP_20014647.1| rhomboid protease glpG [Escherichia coli KTE59]
gi|432789420|ref|ZP_20023547.1| rhomboid protease glpG [Escherichia coli KTE65]
gi|432794617|ref|ZP_20028698.1| rhomboid protease glpG [Escherichia coli KTE78]
gi|432796133|ref|ZP_20030173.1| rhomboid protease glpG [Escherichia coli KTE79]
gi|432803589|ref|ZP_20037541.1| rhomboid protease glpG [Escherichia coli KTE84]
gi|432822856|ref|ZP_20056544.1| rhomboid protease glpG [Escherichia coli KTE118]
gi|432824309|ref|ZP_20057979.1| rhomboid protease glpG [Escherichia coli KTE123]
gi|432841207|ref|ZP_20074666.1| rhomboid protease glpG [Escherichia coli KTE140]
gi|432865466|ref|ZP_20088563.1| rhomboid protease glpG [Escherichia coli KTE146]
gi|432877486|ref|ZP_20095206.1| rhomboid protease glpG [Escherichia coli KTE154]
gi|432888737|ref|ZP_20102450.1| rhomboid protease glpG [Escherichia coli KTE158]
gi|432900683|ref|ZP_20111062.1| rhomboid protease glpG [Escherichia coli KTE192]
gi|432914976|ref|ZP_20120303.1| rhomboid protease glpG [Escherichia coli KTE190]
gi|432957274|ref|ZP_20148777.1| rhomboid protease glpG [Escherichia coli KTE197]
gi|432963926|ref|ZP_20153273.1| rhomboid protease glpG [Escherichia coli KTE202]
gi|432997182|ref|ZP_20185764.1| rhomboid protease glpG [Escherichia coli KTE218]
gi|433007000|ref|ZP_20195423.1| rhomboid protease glpG [Escherichia coli KTE227]
gi|433009616|ref|ZP_20198028.1| rhomboid protease glpG [Escherichia coli KTE229]
gi|433020548|ref|ZP_20208692.1| rhomboid protease glpG [Escherichia coli KTE105]
gi|433030331|ref|ZP_20218180.1| rhomboid protease glpG [Escherichia coli KTE109]
gi|433049860|ref|ZP_20237193.1| rhomboid protease glpG [Escherichia coli KTE120]
gi|433055031|ref|ZP_20242196.1| rhomboid protease glpG [Escherichia coli KTE122]
gi|433064853|ref|ZP_20251762.1| rhomboid protease glpG [Escherichia coli KTE125]
gi|433069722|ref|ZP_20256494.1| rhomboid protease glpG [Escherichia coli KTE128]
gi|433074672|ref|ZP_20261312.1| rhomboid protease glpG [Escherichia coli KTE129]
gi|433079609|ref|ZP_20266127.1| rhomboid protease glpG [Escherichia coli KTE131]
gi|433084346|ref|ZP_20270792.1| rhomboid protease glpG [Escherichia coli KTE133]
gi|433117299|ref|ZP_20303083.1| rhomboid protease glpG [Escherichia coli KTE153]
gi|433122029|ref|ZP_20307687.1| rhomboid protease glpG [Escherichia coli KTE157]
gi|433155567|ref|ZP_20340498.1| rhomboid protease glpG [Escherichia coli KTE176]
gi|433160508|ref|ZP_20345333.1| rhomboid protease glpG [Escherichia coli KTE177]
gi|433165409|ref|ZP_20350138.1| rhomboid protease glpG [Escherichia coli KTE179]
gi|433170407|ref|ZP_20355026.1| rhomboid protease glpG [Escherichia coli KTE180]
gi|433175308|ref|ZP_20359819.1| rhomboid protease glpG [Escherichia coli KTE232]
gi|433180228|ref|ZP_20364612.1| rhomboid protease glpG [Escherichia coli KTE82]
gi|433185135|ref|ZP_20369371.1| rhomboid protease glpG [Escherichia coli KTE85]
gi|433205125|ref|ZP_20388874.1| rhomboid protease glpG [Escherichia coli KTE95]
gi|442604072|ref|ZP_21018920.1| GlpG protein (membrane protein of glp regulon) [Escherichia coli
Nissle 1917]
gi|450251568|ref|ZP_21901893.1| intramembrane serine protease GlpG [Escherichia coli S17]
gi|54041233|sp|P09391.5|GLPG_ECOLI RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|81473977|sp|Q8FCS5.1|GLPG_ECOL6 RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|122422082|sp|Q1R5L1.1|GLPG_ECOUT RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|123147598|sp|Q0TC44.1|GLPG_ECOL5 RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|171704413|sp|A1AGU7.1|GLPG_ECOK1 RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|172044452|sp|A8A5N2.1|GLPG_ECOHS RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|189041236|sp|B1IP42.1|GLPG_ECOLC RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|226729473|sp|B7MDQ0.1|GLPG_ECO45 RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|226729477|sp|B1X769.1|GLPG_ECODH RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|226729478|sp|B7NE28.1|GLPG_ECOLU RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|226729480|sp|B1LI84.1|GLPG_ECOSM RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|254798881|sp|B7UKC8.1|GLPG_ECO27 RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|259492022|sp|C4ZVX5.1|GLPG_ECOBW RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|26110454|gb|AAN82639.1|AE016768_57 Protein glpG [Escherichia coli CFT073]
gi|48994938|gb|AAT48182.1| rhomboid intramembrane serine protease [Escherichia coli str. K-12
substr. MG1655]
gi|85676618|dbj|BAE77868.1| predicted intramembrane serine protease [Escherichia coli str. K12
substr. W3110]
gi|91074472|gb|ABE09353.1| inner membrane-associated protein of glp regulon [Escherichia coli
UTI89]
gi|110345248|gb|ABG71485.1| protein GlpG [Escherichia coli 536]
gi|115514812|gb|ABJ02887.1| putative intramembrane serine protease GlpG [Escherichia coli APEC
O1]
gi|157068581|gb|ABV07836.1| peptidase, S54 (rhomboid) family [Escherichia coli HS]
gi|169753269|gb|ACA75968.1| Rhomboid family protein [Escherichia coli ATCC 8739]
gi|169890774|gb|ACB04481.1| predicted intramembrane serine protease [Escherichia coli str. K-12
substr. DH10B]
gi|170521416|gb|ACB19594.1| peptidase, S54 (rhomboid) family [Escherichia coli SMS-3-5]
gi|194425205|gb|EDX41189.1| peptidase, S54 (rhomboid) family [Escherichia coli 101-1]
gi|215266776|emb|CAS11216.1| predicted intramembrane serine protease [Escherichia coli O127:H6
str. E2348/69]
gi|218367249|emb|CAR05025.1| putative intramembrane serine protease [Escherichia coli S88]
gi|218434111|emb|CAR15028.1| putative intramembrane serine protease [Escherichia coli UMN026]
gi|222035124|emb|CAP77869.1| Protein glpG [Escherichia coli LF82]
gi|226839097|gb|EEH71120.1| rhomboid protease glpG [Escherichia sp. 1_1_43]
gi|226902419|gb|EEH88678.1| rhomboid protease glpG [Escherichia sp. 3_2_53FAA]
gi|227839437|gb|EEJ49903.1| intramembrane serine protease GlpG [Escherichia coli 83972]
gi|238862594|gb|ACR64592.1| predicted intramembrane serine protease [Escherichia coli BW2952]
gi|242378946|emb|CAQ33744.1| intramembrane serine protease GlpG [Escherichia coli BL21(DE3)]
gi|253322791|gb|ACT27393.1| Rhomboid protease [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253975252|gb|ACT40923.1| predicted intramembrane serine protease [Escherichia coli B str.
REL606]
gi|253979408|gb|ACT45078.1| predicted intramembrane serine protease [Escherichia coli
BL21(DE3)]
gi|260447558|gb|ACX37980.1| Rhomboid family protein [Escherichia coli DH1]
gi|284923415|emb|CBG36509.1| putative membrane protein [Escherichia coli 042]
gi|291425812|gb|EFE98846.1| intramembrane serine protease GlpG [Escherichia coli FVEC1412]
gi|291468488|gb|EFF10981.1| conserved hypothetical protein [Escherichia coli B354]
gi|294492754|gb|ADE91510.1| peptidase, S54 (rhomboid) family [Escherichia coli IHE3034]
gi|298276579|gb|EFI18097.1| rhomboid protease glpG [Escherichia coli FVEC1302]
gi|300297993|gb|EFJ54378.1| peptidase, S54 family protein [Escherichia coli MS 185-1]
gi|300306178|gb|EFJ60698.1| peptidase, S54 family protein [Escherichia coli MS 200-1]
gi|300357506|gb|EFJ73376.1| peptidase, S54 family protein [Escherichia coli MS 198-1]
gi|300399208|gb|EFJ82746.1| peptidase, S54 family protein [Escherichia coli MS 69-1]
gi|300408168|gb|EFJ91706.1| peptidase, S54 family protein [Escherichia coli MS 45-1]
gi|300461146|gb|EFK24639.1| peptidase, S54 family protein [Escherichia coli MS 187-1]
gi|301075854|gb|EFK90660.1| peptidase, S54 family protein [Escherichia coli MS 146-1]
gi|307555509|gb|ADN48284.1| inner membrane-associated protein of glp regulon [Escherichia coli
ABU 83972]
gi|309703833|emb|CBJ03174.1| putative membrane protein [Escherichia coli ETEC H10407]
gi|310334690|gb|EFQ00895.1| rhomboid family protein [Escherichia coli 1827-70]
gi|312287089|gb|EFR14999.1| rhomboid family protein [Escherichia coli 2362-75]
gi|312947971|gb|ADR28798.1| intramembrane serine protease GlpG [Escherichia coli O83:H1 str.
NRG 857C]
gi|315137999|dbj|BAJ45158.1| intramembrane serine protease GlpG [Escherichia coli DH1]
gi|315286076|gb|EFU45514.1| peptidase, S54 family protein [Escherichia coli MS 110-3]
gi|315291735|gb|EFU51091.1| peptidase, S54 family protein [Escherichia coli MS 153-1]
gi|315296019|gb|EFU55328.1| peptidase, S54 family protein [Escherichia coli MS 16-3]
gi|315614692|gb|EFU95332.1| rhomboid family protein [Escherichia coli 3431]
gi|323939357|gb|EGB35568.1| rhomboid family protein [Escherichia coli E482]
gi|323959577|gb|EGB55229.1| rhomboid family protein [Escherichia coli H489]
gi|323966236|gb|EGB61672.1| rhomboid family protein [Escherichia coli M863]
gi|324009402|gb|EGB78621.1| peptidase, S54 family protein [Escherichia coli MS 57-2]
gi|324014509|gb|EGB83728.1| peptidase, S54 family protein [Escherichia coli MS 60-1]
gi|325498966|gb|EGC96825.1| intramembrane serine protease GlpG [Escherichia fergusonii ECD227]
gi|327251059|gb|EGE62752.1| rhomboid family protein [Escherichia coli STEC_7v]
gi|331036418|gb|EGI08644.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli H736]
gi|331047019|gb|EGI19097.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli M718]
gi|331057539|gb|EGI29525.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli TA143]
gi|332086005|gb|EGI91169.1| rhomboid family protein [Shigella dysenteriae 155-74]
gi|332345376|gb|AEE58710.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|342363161|gb|EGU27272.1| intramembrane serine protease GlpG [Escherichia coli XH140A]
gi|344193277|gb|EGV47359.1| intramembrane serine protease GlpG [Escherichia coli XH001]
gi|345359415|gb|EGW91592.1| rhomboid family protein [Escherichia coli STEC_EH250]
gi|345385405|gb|EGX15250.1| rhomboid family protein [Escherichia coli STEC_S1191]
gi|355422206|gb|AER86403.1| intramembrane serine protease GlpG [Escherichia coli str. 'clone D
i2']
gi|355427126|gb|AER91322.1| intramembrane serine protease GlpG [Escherichia coli str. 'clone D
i14']
gi|359333589|dbj|BAL40036.1| predicted intramembrane serine protease [Escherichia coli str. K-12
substr. MDS42]
gi|371604680|gb|EHN93307.1| rhomboid protease glpG [Escherichia coli H397]
gi|371605144|gb|EHN93764.1| rhomboid protease glpG [Escherichia coli B093]
gi|373245192|gb|EHP64664.1| rhomboid protease glpG [Escherichia coli 4_1_47FAA]
gi|377840579|gb|EHU05651.1| rhomboid family protein [Escherichia coli DEC1C]
gi|377857218|gb|EHU22072.1| rhomboid family protein [Escherichia coli DEC1E]
gi|377859862|gb|EHU24690.1| rhomboid protease glpG [Escherichia coli DEC2A]
gi|377875435|gb|EHU40045.1| rhomboid family protein [Escherichia coli DEC2D]
gi|377989852|gb|EHV53018.1| rhomboid family protein [Escherichia coli DEC6B]
gi|377993577|gb|EHV56709.1| rhomboid protease glpG [Escherichia coli DEC6C]
gi|378004792|gb|EHV67803.1| rhomboid protease glpG [Escherichia coli DEC6D]
gi|380346535|gb|EIA34828.1| intramembrane serine protease GlpG [Escherichia coli SCI-07]
gi|383104835|gb|AFG42344.1| Rhomboid protease glpG [Escherichia coli P12b]
gi|384380946|gb|EIE38809.1| rhomboid family protein [Escherichia coli J53]
gi|385155441|gb|EIF17444.1| intramembrane serine protease GlpG [Escherichia coli O32:H37 str.
P4]
gi|385537989|gb|EIF84856.1| rhomboid protease glpG [Escherichia coli M919]
gi|385709659|gb|EIG46656.1| rhomboid protease glpG [Escherichia coli H730]
gi|386119911|gb|EIG68548.1| rhomboid protease glpG [Escherichia sp. 4_1_40B]
gi|386234961|gb|EII66937.1| rhomboid protease GlpG [Escherichia coli 2.4168]
gi|386241433|gb|EII78351.1| rhomboid protease GlpG [Escherichia coli 3.2303]
gi|388391753|gb|EIL53198.1| intramembrane serine protease GlpG [Escherichia coli KD1]
gi|408190826|gb|EKI16458.1| rhomboid protease glpG [Escherichia coli TW15901]
gi|408199588|gb|EKI24787.1| rhomboid protease glpG [Escherichia coli TW00353]
gi|408226118|gb|EKI49777.1| rhomboid protease glpG [Escherichia coli N1]
gi|408564619|gb|EKK40721.1| rhomboid family protease GlpG [Escherichia coli 8.0566]
gi|430872870|gb|ELB96450.1| rhomboid protease glpG [Escherichia coli KTE2]
gi|430874177|gb|ELB97742.1| rhomboid protease glpG [Escherichia coli KTE4]
gi|430883516|gb|ELC06510.1| rhomboid protease glpG [Escherichia coli KTE5]
gi|430891674|gb|ELC14200.1| rhomboid protease glpG [Escherichia coli KTE10]
gi|430923187|gb|ELC43924.1| rhomboid protease glpG [Escherichia coli KTE26]
gi|430936723|gb|ELC56991.1| rhomboid protease glpG [Escherichia coli KTE44]
gi|430950806|gb|ELC70034.1| rhomboid protease glpG [Escherichia coli KTE187]
gi|430951873|gb|ELC71081.1| rhomboid protease glpG [Escherichia coli KTE181]
gi|430986002|gb|ELD02585.1| rhomboid protease glpG [Escherichia coli KTE204]
gi|430991351|gb|ELD07755.1| rhomboid protease glpG [Escherichia coli KTE205]
gi|430995759|gb|ELD12049.1| rhomboid protease glpG [Escherichia coli KTE206]
gi|431002340|gb|ELD17853.1| rhomboid protease glpG [Escherichia coli KTE208]
gi|431013895|gb|ELD27617.1| rhomboid protease glpG [Escherichia coli KTE212]
gi|431018328|gb|ELD31764.1| rhomboid protease glpG [Escherichia coli KTE213]
gi|431047845|gb|ELD57830.1| rhomboid protease glpG [Escherichia coli KTE228]
gi|431067167|gb|ELD75776.1| rhomboid protease glpG [Escherichia coli KTE235]
gi|431081148|gb|ELD87927.1| rhomboid protease glpG [Escherichia coli KTE47]
gi|431090385|gb|ELD96154.1| rhomboid protease glpG [Escherichia coli KTE51]
gi|431104933|gb|ELE09297.1| rhomboid protease glpG [Escherichia coli KTE55]
gi|431112744|gb|ELE16426.1| rhomboid protease glpG [Escherichia coli KTE56]
gi|431114845|gb|ELE18372.1| rhomboid protease glpG [Escherichia coli KTE57]
gi|431117926|gb|ELE21150.1| rhomboid protease glpG [Escherichia coli KTE58]
gi|431128483|gb|ELE30667.1| rhomboid protease glpG [Escherichia coli KTE62]
gi|431137623|gb|ELE39468.1| rhomboid protease glpG [Escherichia coli KTE66]
gi|431160921|gb|ELE61422.1| rhomboid protease glpG [Escherichia coli KTE77]
gi|431167454|gb|ELE67719.1| rhomboid protease glpG [Escherichia coli KTE80]
gi|431177727|gb|ELE77641.1| rhomboid protease glpG [Escherichia coli KTE83]
gi|431197212|gb|ELE96078.1| rhomboid protease glpG [Escherichia coli KTE111]
gi|431197789|gb|ELE96616.1| rhomboid protease glpG [Escherichia coli KTE116]
gi|431208294|gb|ELF06516.1| rhomboid protease glpG [Escherichia coli KTE119]
gi|431219674|gb|ELF17068.1| rhomboid protease glpG [Escherichia coli KTE156]
gi|431235995|gb|ELF31209.1| rhomboid protease glpG [Escherichia coli KTE161]
gi|431240836|gb|ELF35284.1| rhomboid protease glpG [Escherichia coli KTE171]
gi|431252494|gb|ELF46009.1| rhomboid protease glpG [Escherichia coli KTE8]
gi|431260576|gb|ELF52673.1| rhomboid protease glpG [Escherichia coli KTE9]
gi|431289297|gb|ELF80038.1| rhomboid protease glpG [Escherichia coli KTE43]
gi|431299888|gb|ELF89454.1| rhomboid protease glpG [Escherichia coli KTE22]
gi|431322188|gb|ELG09776.1| rhomboid protease glpG [Escherichia coli KTE50]
gi|431324143|gb|ELG11599.1| rhomboid protease glpG [Escherichia coli KTE54]
gi|431324819|gb|ELG12235.1| rhomboid protease glpG [Escherichia coli KTE59]
gi|431335300|gb|ELG22440.1| rhomboid protease glpG [Escherichia coli KTE65]
gi|431337101|gb|ELG24195.1| rhomboid protease glpG [Escherichia coli KTE78]
gi|431346128|gb|ELG33041.1| rhomboid protease glpG [Escherichia coli KTE84]
gi|431349354|gb|ELG36195.1| rhomboid protease glpG [Escherichia coli KTE79]
gi|431365589|gb|ELG52094.1| rhomboid protease glpG [Escherichia coli KTE118]
gi|431378834|gb|ELG63825.1| rhomboid protease glpG [Escherichia coli KTE123]
gi|431386439|gb|ELG70395.1| rhomboid protease glpG [Escherichia coli KTE140]
gi|431402212|gb|ELG85525.1| rhomboid protease glpG [Escherichia coli KTE146]
gi|431414090|gb|ELG96839.1| rhomboid protease glpG [Escherichia coli KTE158]
gi|431418188|gb|ELH00602.1| rhomboid protease glpG [Escherichia coli KTE154]
gi|431423638|gb|ELH05764.1| rhomboid protease glpG [Escherichia coli KTE192]
gi|431436044|gb|ELH17651.1| rhomboid protease glpG [Escherichia coli KTE190]
gi|431464843|gb|ELH44961.1| rhomboid protease glpG [Escherichia coli KTE197]
gi|431470453|gb|ELH50375.1| rhomboid protease glpG [Escherichia coli KTE202]
gi|431502780|gb|ELH81665.1| rhomboid protease glpG [Escherichia coli KTE218]
gi|431510447|gb|ELH88692.1| rhomboid protease glpG [Escherichia coli KTE227]
gi|431521542|gb|ELH98787.1| rhomboid protease glpG [Escherichia coli KTE229]
gi|431527549|gb|ELI04264.1| rhomboid protease glpG [Escherichia coli KTE105]
gi|431540799|gb|ELI16253.1| rhomboid protease glpG [Escherichia coli KTE109]
gi|431562526|gb|ELI35828.1| rhomboid protease glpG [Escherichia coli KTE120]
gi|431567174|gb|ELI40187.1| rhomboid protease glpG [Escherichia coli KTE122]
gi|431578706|gb|ELI51299.1| rhomboid protease glpG [Escherichia coli KTE125]
gi|431579850|gb|ELI52421.1| rhomboid protease glpG [Escherichia coli KTE128]
gi|431583912|gb|ELI55900.1| rhomboid protease glpG [Escherichia coli KTE129]
gi|431594196|gb|ELI64479.1| rhomboid protease glpG [Escherichia coli KTE131]
gi|431598307|gb|ELI68103.1| rhomboid protease glpG [Escherichia coli KTE133]
gi|431631360|gb|ELI99672.1| rhomboid protease glpG [Escherichia coli KTE153]
gi|431639295|gb|ELJ07158.1| rhomboid protease glpG [Escherichia coli KTE157]
gi|431670998|gb|ELJ37289.1| rhomboid protease glpG [Escherichia coli KTE176]
gi|431674556|gb|ELJ40717.1| rhomboid protease glpG [Escherichia coli KTE177]
gi|431684222|gb|ELJ49834.1| rhomboid protease glpG [Escherichia coli KTE179]
gi|431684574|gb|ELJ50180.1| rhomboid protease glpG [Escherichia coli KTE180]
gi|431689424|gb|ELJ54931.1| rhomboid protease glpG [Escherichia coli KTE232]
gi|431698382|gb|ELJ63431.1| rhomboid protease glpG [Escherichia coli KTE82]
gi|431702773|gb|ELJ67568.1| rhomboid protease glpG [Escherichia coli KTE85]
gi|431716763|gb|ELJ80869.1| rhomboid protease glpG [Escherichia coli KTE95]
gi|441715117|emb|CCQ04897.1| GlpG protein (membrane protein of glp regulon) [Escherichia coli
Nissle 1917]
gi|449315440|gb|EMD05583.1| intramembrane serine protease GlpG [Escherichia coli S17]
Length = 276
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|420334129|ref|ZP_14835757.1| rhomboid protease glpG [Shigella flexneri K-1770]
gi|391243174|gb|EIQ02470.1| rhomboid protease glpG [Shigella flexneri K-1770]
Length = 274
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 82 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 140 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 188 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 219
>gi|361067743|gb|AEW08183.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
Length = 159
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 88 LGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEY-FRRVTAVGYSCVVFGWMTILSVK 146
+G+ + VL+ LS +V+ +L F Y AVG+S V+F +L+
Sbjct: 5 MGSTEFASMVAVLLGLSHGIVVVTAKVLATFFDYPYPLTSECAVGFSAVLFALKVVLNSS 64
Query: 147 QPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
S ++G + +P +A + L+ + VP SF+GHLSGI G
Sbjct: 65 S-SDPTYVYGGVVVPARYAAWAELLLIQMFVPGVSFIGHLSGIFAG 109
>gi|331685065|ref|ZP_08385651.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli H299]
gi|331077436|gb|EGI48648.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli H299]
Length = 274
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 82 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 140 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 188 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 219
>gi|218550681|ref|YP_002384472.1| intramembrane serine protease GlpG [Escherichia fergusonii ATCC
35469]
gi|226729481|sp|B7LSC6.1|GLPG_ESCF3 RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|218358222|emb|CAQ90869.1| putative intramembrane serine protease [Escherichia fergusonii ATCC
35469]
Length = 276
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|188494688|ref|ZP_03001958.1| peptidase, S54 family [Escherichia coli 53638]
gi|188489887|gb|EDU64990.1| peptidase, S54 family [Escherichia coli 53638]
Length = 276
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|432638627|ref|ZP_19874492.1| rhomboid protease glpG [Escherichia coli KTE81]
gi|431168949|gb|ELE69181.1| rhomboid protease glpG [Escherichia coli KTE81]
Length = 276
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|432394004|ref|ZP_19636825.1| rhomboid protease glpG [Escherichia coli KTE21]
gi|430914882|gb|ELC35970.1| rhomboid protease glpG [Escherichia coli KTE21]
Length = 276
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|420323145|ref|ZP_14824961.1| rhomboid protease glpG [Shigella flexneri 2850-71]
gi|391244095|gb|EIQ03382.1| rhomboid protease glpG [Shigella flexneri 2850-71]
Length = 276
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|1293533|gb|AAC28166.1| the translation start site has been verified [Escherichia coli]
Length = 276
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|606359|gb|AAA58222.1| CG Site No. 18262 [Escherichia coli str. K-12 substr. MG1655]
Length = 274
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 82 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 140 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 188 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 219
>gi|350568870|ref|ZP_08937268.1| membrane spanning protein [Propionibacterium avidum ATCC 25577]
gi|348661113|gb|EGY77809.1| membrane spanning protein [Propionibacterium avidum ATCC 25577]
Length = 300
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 85/193 (44%), Gaps = 36/193 (18%)
Query: 15 TSCIIGICSVIWFYIQKKNIGYSHVGLSYETAV-----DGHH--WRIITSAFSH-ISVLH 66
T +IGIC ++W V AV G H WR +TS F H +S+LH
Sbjct: 89 TWTLIGICFLVW--------AGEWVSPQIRDAVVLAPFQGFHEPWRFVTSMFGHALSILH 140
Query: 67 LVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLL-VLGIYHLLIQRFKLEYF 124
+ FNM ALW+LG +E LG A +L L+ + G+L L RF
Sbjct: 141 IGFNMYALWALGRSLEPF----LGRARFLAAYLMSGLGGGVLFCLMASPHGDGRFLPNMN 196
Query: 125 RRVTAVGYSCVVFGWMTILSVKQP---SSKLDLFGFLSLPISFAPFESLIFTSIIVPQAS 181
V VG S +FG +L + Q +S DL+ L++ + L F S I QA
Sbjct: 197 DGV--VGASGAIFGLFGVLLIVQRRLGASTRDLWIVLAINAAL-----LFFISGIAWQA- 248
Query: 182 FLGHLSGIIVGYA 194
HL G IVG A
Sbjct: 249 ---HLGGFIVGLA 258
>gi|417141370|ref|ZP_11984283.1| rhomboid protease GlpG [Escherichia coli 97.0259]
gi|417309923|ref|ZP_12096750.1| Rhomboid protease glpG [Escherichia coli PCN033]
gi|422974074|ref|ZP_16976171.1| rhomboid protease glpG [Escherichia coli TA124]
gi|432870910|ref|ZP_20091330.1| rhomboid protease glpG [Escherichia coli KTE147]
gi|338768528|gb|EGP23321.1| Rhomboid protease glpG [Escherichia coli PCN033]
gi|371596051|gb|EHN84894.1| rhomboid protease glpG [Escherichia coli TA124]
gi|386155860|gb|EIH12210.1| rhomboid protease GlpG [Escherichia coli 97.0259]
gi|431408895|gb|ELG92077.1| rhomboid protease glpG [Escherichia coli KTE147]
Length = 276
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|422807341|ref|ZP_16855771.1| rhomboid family protein [Escherichia fergusonii B253]
gi|324111736|gb|EGC05716.1| rhomboid family protein [Escherichia fergusonii B253]
Length = 276
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGTVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|417710161|ref|ZP_12359175.1| rhomboid family protein [Shigella flexneri VA-6]
gi|417715120|ref|ZP_12364064.1| rhomboid family protein [Shigella flexneri K-272]
gi|417720075|ref|ZP_12368950.1| rhomboid family protein [Shigella flexneri K-227]
gi|417830487|ref|ZP_12477023.1| rhomboid family protein [Shigella flexneri J1713]
gi|172045687|sp|Q0SZP2.2|GLPG_SHIF8 RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|332996387|gb|EGK16014.1| rhomboid family protein [Shigella flexneri VA-6]
gi|332996625|gb|EGK16250.1| rhomboid family protein [Shigella flexneri K-272]
gi|333013034|gb|EGK32410.1| rhomboid family protein [Shigella flexneri K-227]
gi|335573142|gb|EGM59505.1| rhomboid family protein [Shigella flexneri J1713]
Length = 276
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|361067741|gb|AEW08182.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176329|gb|AFG71694.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176331|gb|AFG71695.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176333|gb|AFG71696.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176335|gb|AFG71697.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176337|gb|AFG71698.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176339|gb|AFG71699.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176341|gb|AFG71700.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176343|gb|AFG71701.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176345|gb|AFG71702.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176347|gb|AFG71703.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176349|gb|AFG71704.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176351|gb|AFG71705.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176353|gb|AFG71706.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176355|gb|AFG71707.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176357|gb|AFG71708.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176359|gb|AFG71709.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
gi|383176361|gb|AFG71710.1| Pinus taeda anonymous locus 2_2414_01 genomic sequence
Length = 158
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 88 LGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEY-FRRVTAVGYSCVVFGWMTILSVK 146
+G+ + VL+ LS +V+ +L F Y AVG+S V+F +L+
Sbjct: 5 MGSTEFASMVAVLLGLSHGIVVVTAKVLATFFDYPYPLTSECAVGFSAVLFALKVVLNSN 64
Query: 147 QPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
P+ +++G + +P A + L+ + VP SFLGHLSGI G
Sbjct: 65 SPNLT-NVYGVV-VPARHAAWAELLLIQMFVPGVSFLGHLSGIFAG 108
>gi|218702168|ref|YP_002409797.1| intramembrane serine protease GlpG [Escherichia coli IAI39]
gi|300937277|ref|ZP_07152121.1| peptidase, S54 family protein [Escherichia coli MS 21-1]
gi|331649221|ref|ZP_08350307.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli M605]
gi|387831296|ref|YP_003351233.1| hypothetical protein ECSF_3243 [Escherichia coli SE15]
gi|425302273|ref|ZP_18692154.1| rhomboid protease glpG [Escherichia coli 07798]
gi|432399364|ref|ZP_19642138.1| rhomboid protease glpG [Escherichia coli KTE25]
gi|432408489|ref|ZP_19651192.1| rhomboid protease glpG [Escherichia coli KTE28]
gi|432423824|ref|ZP_19666362.1| rhomboid protease glpG [Escherichia coli KTE178]
gi|432442904|ref|ZP_19685239.1| rhomboid protease glpG [Escherichia coli KTE189]
gi|432501973|ref|ZP_19743724.1| rhomboid protease glpG [Escherichia coli KTE216]
gi|432560686|ref|ZP_19797341.1| rhomboid protease glpG [Escherichia coli KTE49]
gi|432682137|ref|ZP_19917495.1| rhomboid protease glpG [Escherichia coli KTE143]
gi|432696283|ref|ZP_19931475.1| rhomboid protease glpG [Escherichia coli KTE162]
gi|432707760|ref|ZP_19942836.1| rhomboid protease glpG [Escherichia coli KTE6]
gi|432724882|ref|ZP_19959795.1| rhomboid protease glpG [Escherichia coli KTE17]
gi|432729465|ref|ZP_19964339.1| rhomboid protease glpG [Escherichia coli KTE18]
gi|432734169|ref|ZP_19968993.1| rhomboid protease glpG [Escherichia coli KTE45]
gi|432743152|ref|ZP_19977866.1| rhomboid protease glpG [Escherichia coli KTE23]
gi|432761254|ref|ZP_19995744.1| rhomboid protease glpG [Escherichia coli KTE46]
gi|432890865|ref|ZP_20103720.1| rhomboid protease glpG [Escherichia coli KTE165]
gi|432982862|ref|ZP_20171632.1| rhomboid protease glpG [Escherichia coli KTE211]
gi|432992516|ref|ZP_20181174.1| rhomboid protease glpG [Escherichia coli KTE217]
gi|433015721|ref|ZP_20204054.1| rhomboid protease glpG [Escherichia coli KTE104]
gi|433098225|ref|ZP_20284397.1| rhomboid protease glpG [Escherichia coli KTE139]
gi|433107672|ref|ZP_20293633.1| rhomboid protease glpG [Escherichia coli KTE148]
gi|433112650|ref|ZP_20298504.1| rhomboid protease glpG [Escherichia coli KTE150]
gi|433324368|ref|ZP_20401664.1| rhomboid intramembrane serine protease [Escherichia coli J96]
gi|226729475|sp|B7NMI8.1|GLPG_ECO7I RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|218372154|emb|CAR20016.1| putative intramembrane serine protease [Escherichia coli IAI39]
gi|281180453|dbj|BAI56783.1| conserved hypothetical protein [Escherichia coli SE15]
gi|300457679|gb|EFK21172.1| peptidase, S54 family protein [Escherichia coli MS 21-1]
gi|331041719|gb|EGI13863.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli M605]
gi|408211160|gb|EKI35713.1| rhomboid protease glpG [Escherichia coli 07798]
gi|430913237|gb|ELC34367.1| rhomboid protease glpG [Escherichia coli KTE25]
gi|430927360|gb|ELC47924.1| rhomboid protease glpG [Escherichia coli KTE28]
gi|430942168|gb|ELC62306.1| rhomboid protease glpG [Escherichia coli KTE178]
gi|430963947|gb|ELC81526.1| rhomboid protease glpG [Escherichia coli KTE189]
gi|431026152|gb|ELD39227.1| rhomboid protease glpG [Escherichia coli KTE216]
gi|431088747|gb|ELD94617.1| rhomboid protease glpG [Escherichia coli KTE49]
gi|431217684|gb|ELF15250.1| rhomboid protease glpG [Escherichia coli KTE143]
gi|431231509|gb|ELF27270.1| rhomboid protease glpG [Escherichia coli KTE162]
gi|431255294|gb|ELF48548.1| rhomboid protease glpG [Escherichia coli KTE6]
gi|431262101|gb|ELF54091.1| rhomboid protease glpG [Escherichia coli KTE17]
gi|431271282|gb|ELF62421.1| rhomboid protease glpG [Escherichia coli KTE18]
gi|431272062|gb|ELF63180.1| rhomboid protease glpG [Escherichia coli KTE45]
gi|431281309|gb|ELF72212.1| rhomboid protease glpG [Escherichia coli KTE23]
gi|431306561|gb|ELF94874.1| rhomboid protease glpG [Escherichia coli KTE46]
gi|431431159|gb|ELH12937.1| rhomboid protease glpG [Escherichia coli KTE165]
gi|431489460|gb|ELH69087.1| rhomboid protease glpG [Escherichia coli KTE211]
gi|431491666|gb|ELH71270.1| rhomboid protease glpG [Escherichia coli KTE217]
gi|431527097|gb|ELI03824.1| rhomboid protease glpG [Escherichia coli KTE104]
gi|431612715|gb|ELI81927.1| rhomboid protease glpG [Escherichia coli KTE139]
gi|431624164|gb|ELI92785.1| rhomboid protease glpG [Escherichia coli KTE148]
gi|431625604|gb|ELI94182.1| rhomboid protease glpG [Escherichia coli KTE150]
gi|432347214|gb|ELL41677.1| rhomboid intramembrane serine protease [Escherichia coli J96]
Length = 276
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|191171556|ref|ZP_03033104.1| peptidase, S54 (rhomboid) family [Escherichia coli F11]
gi|194431174|ref|ZP_03063467.1| peptidase, S54 (rhomboid) family [Shigella dysenteriae 1012]
gi|297518641|ref|ZP_06937027.1| intramembrane serine protease GlpG [Escherichia coli OP50]
gi|301021770|ref|ZP_07185735.1| peptidase, S54 family protein [Escherichia coli MS 196-1]
gi|306816239|ref|ZP_07450377.1| intramembrane serine protease GlpG [Escherichia coli NC101]
gi|331659713|ref|ZP_08360651.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli TA206]
gi|386606001|ref|YP_006112301.1| intramembrane serine protease GlpG [Escherichia coli UM146]
gi|416280373|ref|ZP_11645340.1| intramembrane serine protease GlpG [Shigella boydii ATCC 9905]
gi|417087165|ref|ZP_11954212.1| peptidase, S54 (rhomboid) family [Escherichia coli cloneA_i1]
gi|417264030|ref|ZP_12051424.1| rhomboid protease GlpG [Escherichia coli 2.3916]
gi|417588509|ref|ZP_12239272.1| rhomboid family protein [Escherichia coli STEC_C165-02]
gi|417691770|ref|ZP_12340979.1| rhomboid family protein [Shigella boydii 5216-82]
gi|417757754|ref|ZP_12405819.1| rhomboid family protein [Escherichia coli DEC2B]
gi|418305051|ref|ZP_12916845.1| rhomboid family protein [Escherichia coli UMNF18]
gi|418998798|ref|ZP_13546381.1| rhomboid family protein [Escherichia coli DEC1A]
gi|419004130|ref|ZP_13551642.1| rhomboid family protein [Escherichia coli DEC1B]
gi|419015443|ref|ZP_13562781.1| rhomboid protease glpG [Escherichia coli DEC1D]
gi|419031029|ref|ZP_13578176.1| rhomboid family protein [Escherichia coli DEC2C]
gi|419041732|ref|ZP_13588749.1| rhomboid family protein [Escherichia coli DEC2E]
gi|419144509|ref|ZP_13689239.1| rhomboid protease glpG [Escherichia coli DEC6A]
gi|419166298|ref|ZP_13710748.1| rhomboid family protein [Escherichia coli DEC6E]
gi|419177105|ref|ZP_13720915.1| rhomboid family protein [Escherichia coli DEC7B]
gi|419918645|ref|ZP_14436825.1| intramembrane serine protease GlpG [Escherichia coli KD2]
gi|419933920|ref|ZP_14451067.1| intramembrane serine protease GlpG [Escherichia coli 576-1]
gi|419944059|ref|ZP_14460570.1| intramembrane serine protease GlpG [Escherichia coli HM605]
gi|420349401|ref|ZP_14850779.1| rhomboid protease glpG [Shigella boydii 965-58]
gi|421776607|ref|ZP_16213210.1| intramembrane serine protease GlpG [Escherichia coli AD30]
gi|422751261|ref|ZP_16805170.1| rhomboid family protein [Escherichia coli H252]
gi|422756927|ref|ZP_16810749.1| rhomboid family protein [Escherichia coli H263]
gi|422768787|ref|ZP_16822511.1| rhomboid family protein [Escherichia coli E1520]
gi|422793472|ref|ZP_16846168.1| rhomboid family protein [Escherichia coli TA007]
gi|425121735|ref|ZP_18523418.1| rhomboid family protease GlpG [Escherichia coli 8.0569]
gi|432383318|ref|ZP_19626243.1| rhomboid protease glpG [Escherichia coli KTE15]
gi|432389225|ref|ZP_19632104.1| rhomboid protease glpG [Escherichia coli KTE16]
gi|432413642|ref|ZP_19656296.1| rhomboid protease glpG [Escherichia coli KTE39]
gi|432438228|ref|ZP_19680611.1| rhomboid protease glpG [Escherichia coli KTE188]
gi|432458541|ref|ZP_19700717.1| rhomboid protease glpG [Escherichia coli KTE201]
gi|432497535|ref|ZP_19739327.1| rhomboid protease glpG [Escherichia coli KTE214]
gi|432506292|ref|ZP_19748011.1| rhomboid protease glpG [Escherichia coli KTE220]
gi|432515809|ref|ZP_19753024.1| rhomboid protease glpG [Escherichia coli KTE224]
gi|432525747|ref|ZP_19762865.1| rhomboid protease glpG [Escherichia coli KTE230]
gi|432570648|ref|ZP_19807154.1| rhomboid protease glpG [Escherichia coli KTE53]
gi|432594614|ref|ZP_19830926.1| rhomboid protease glpG [Escherichia coli KTE60]
gi|432609454|ref|ZP_19845635.1| rhomboid protease glpG [Escherichia coli KTE67]
gi|432613424|ref|ZP_19849581.1| rhomboid protease glpG [Escherichia coli KTE72]
gi|432618658|ref|ZP_19854762.1| rhomboid protease glpG [Escherichia coli KTE75]
gi|432648091|ref|ZP_19883876.1| rhomboid protease glpG [Escherichia coli KTE86]
gi|432653012|ref|ZP_19888757.1| rhomboid protease glpG [Escherichia coli KTE87]
gi|432657656|ref|ZP_19893352.1| rhomboid protease glpG [Escherichia coli KTE93]
gi|432700935|ref|ZP_19936079.1| rhomboid protease glpG [Escherichia coli KTE169]
gi|432785386|ref|ZP_20019563.1| rhomboid protease glpG [Escherichia coli KTE63]
gi|432846498|ref|ZP_20079140.1| rhomboid protease glpG [Escherichia coli KTE141]
gi|432907123|ref|ZP_20115599.1| rhomboid protease glpG [Escherichia coli KTE194]
gi|432940228|ref|ZP_20138142.1| rhomboid protease glpG [Escherichia coli KTE183]
gi|432973694|ref|ZP_20162537.1| rhomboid protease glpG [Escherichia coli KTE207]
gi|432975621|ref|ZP_20164455.1| rhomboid protease glpG [Escherichia coli KTE209]
gi|432987266|ref|ZP_20175978.1| rhomboid protease glpG [Escherichia coli KTE215]
gi|433001778|ref|ZP_20190296.1| rhomboid protease glpG [Escherichia coli KTE223]
gi|433040419|ref|ZP_20228009.1| rhomboid protease glpG [Escherichia coli KTE113]
gi|433059903|ref|ZP_20246938.1| rhomboid protease glpG [Escherichia coli KTE124]
gi|433089078|ref|ZP_20275440.1| rhomboid protease glpG [Escherichia coli KTE137]
gi|433103006|ref|ZP_20289077.1| rhomboid protease glpG [Escherichia coli KTE145]
gi|433126987|ref|ZP_20312532.1| rhomboid protease glpG [Escherichia coli KTE160]
gi|433141051|ref|ZP_20326295.1| rhomboid protease glpG [Escherichia coli KTE167]
gi|433146024|ref|ZP_20331156.1| rhomboid protease glpG [Escherichia coli KTE168]
gi|433151056|ref|ZP_20336055.1| rhomboid protease glpG [Escherichia coli KTE174]
gi|433190225|ref|ZP_20374312.1| rhomboid protease glpG [Escherichia coli KTE88]
gi|433200165|ref|ZP_20384051.1| rhomboid protease glpG [Escherichia coli KTE94]
gi|433209543|ref|ZP_20393209.1| rhomboid protease glpG [Escherichia coli KTE97]
gi|433214395|ref|ZP_20397976.1| rhomboid protease glpG [Escherichia coli KTE99]
gi|442593911|ref|ZP_21011837.1| GlpG protein (membrane protein of glp regulon) [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|442596744|ref|ZP_21014548.1| GlpG protein (membrane protein of glp regulon) [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|190908183|gb|EDV67774.1| peptidase, S54 (rhomboid) family [Escherichia coli F11]
gi|194420629|gb|EDX36705.1| peptidase, S54 (rhomboid) family [Shigella dysenteriae 1012]
gi|299881462|gb|EFI89673.1| peptidase, S54 family protein [Escherichia coli MS 196-1]
gi|305850635|gb|EFM51092.1| intramembrane serine protease GlpG [Escherichia coli NC101]
gi|307628485|gb|ADN72789.1| intramembrane serine protease GlpG [Escherichia coli UM146]
gi|320181916|gb|EFW56822.1| intramembrane serine protease GlpG [Shigella boydii ATCC 9905]
gi|323934587|gb|EGB30987.1| rhomboid family protein [Escherichia coli E1520]
gi|323950080|gb|EGB45963.1| rhomboid family protein [Escherichia coli H252]
gi|323954640|gb|EGB50422.1| rhomboid family protein [Escherichia coli H263]
gi|323970021|gb|EGB65296.1| rhomboid family protein [Escherichia coli TA007]
gi|331052928|gb|EGI24961.1| rhomboid protease GlpG (Intramembrane serineprotease) [Escherichia
coli TA206]
gi|332085575|gb|EGI90741.1| rhomboid family protein [Shigella boydii 5216-82]
gi|339417149|gb|AEJ58821.1| rhomboid family protein [Escherichia coli UMNF18]
gi|345332582|gb|EGW65038.1| rhomboid family protein [Escherichia coli STEC_C165-02]
gi|355350085|gb|EHF99286.1| peptidase, S54 (rhomboid) family [Escherichia coli cloneA_i1]
gi|377840242|gb|EHU05317.1| rhomboid family protein [Escherichia coli DEC1A]
gi|377843136|gb|EHU08177.1| rhomboid family protein [Escherichia coli DEC1B]
gi|377853797|gb|EHU18688.1| rhomboid protease glpG [Escherichia coli DEC1D]
gi|377871405|gb|EHU36069.1| rhomboid family protein [Escherichia coli DEC2B]
gi|377873699|gb|EHU38331.1| rhomboid family protein [Escherichia coli DEC2C]
gi|377886444|gb|EHU50925.1| rhomboid family protein [Escherichia coli DEC2E]
gi|377990754|gb|EHV53912.1| rhomboid protease glpG [Escherichia coli DEC6A]
gi|378007033|gb|EHV70003.1| rhomboid family protein [Escherichia coli DEC6E]
gi|378029772|gb|EHV92377.1| rhomboid family protein [Escherichia coli DEC7B]
gi|386221739|gb|EII44168.1| rhomboid protease GlpG [Escherichia coli 2.3916]
gi|388389761|gb|EIL51279.1| intramembrane serine protease GlpG [Escherichia coli KD2]
gi|388410084|gb|EIL70344.1| intramembrane serine protease GlpG [Escherichia coli 576-1]
gi|388419676|gb|EIL79395.1| intramembrane serine protease GlpG [Escherichia coli HM605]
gi|391266495|gb|EIQ25445.1| rhomboid protease glpG [Shigella boydii 965-58]
gi|408458295|gb|EKJ82083.1| intramembrane serine protease GlpG [Escherichia coli AD30]
gi|408565754|gb|EKK41836.1| rhomboid family protease GlpG [Escherichia coli 8.0569]
gi|430903216|gb|ELC24953.1| rhomboid protease glpG [Escherichia coli KTE16]
gi|430903703|gb|ELC25439.1| rhomboid protease glpG [Escherichia coli KTE15]
gi|430933471|gb|ELC53877.1| rhomboid protease glpG [Escherichia coli KTE39]
gi|430960782|gb|ELC78833.1| rhomboid protease glpG [Escherichia coli KTE188]
gi|430979999|gb|ELC96763.1| rhomboid protease glpG [Escherichia coli KTE201]
gi|431021070|gb|ELD34399.1| rhomboid protease glpG [Escherichia coli KTE214]
gi|431035640|gb|ELD47023.1| rhomboid protease glpG [Escherichia coli KTE220]
gi|431038504|gb|ELD49400.1| rhomboid protease glpG [Escherichia coli KTE224]
gi|431048858|gb|ELD58826.1| rhomboid protease glpG [Escherichia coli KTE230]
gi|431097721|gb|ELE03048.1| rhomboid protease glpG [Escherichia coli KTE53]
gi|431126071|gb|ELE28425.1| rhomboid protease glpG [Escherichia coli KTE60]
gi|431135765|gb|ELE37640.1| rhomboid protease glpG [Escherichia coli KTE67]
gi|431146446|gb|ELE47882.1| rhomboid protease glpG [Escherichia coli KTE72]
gi|431151709|gb|ELE52722.1| rhomboid protease glpG [Escherichia coli KTE75]
gi|431178064|gb|ELE77977.1| rhomboid protease glpG [Escherichia coli KTE86]
gi|431187427|gb|ELE86928.1| rhomboid protease glpG [Escherichia coli KTE87]
gi|431187767|gb|ELE87266.1| rhomboid protease glpG [Escherichia coli KTE93]
gi|431240046|gb|ELF34508.1| rhomboid protease glpG [Escherichia coli KTE169]
gi|431326465|gb|ELG13811.1| rhomboid protease glpG [Escherichia coli KTE63]
gi|431392733|gb|ELG76304.1| rhomboid protease glpG [Escherichia coli KTE141]
gi|431428089|gb|ELH10031.1| rhomboid protease glpG [Escherichia coli KTE194]
gi|431460122|gb|ELH40411.1| rhomboid protease glpG [Escherichia coli KTE183]
gi|431479041|gb|ELH58784.1| rhomboid protease glpG [Escherichia coli KTE207]
gi|431486435|gb|ELH66085.1| rhomboid protease glpG [Escherichia coli KTE209]
gi|431494511|gb|ELH74099.1| rhomboid protease glpG [Escherichia coli KTE215]
gi|431504760|gb|ELH83384.1| rhomboid protease glpG [Escherichia coli KTE223]
gi|431548991|gb|ELI23082.1| rhomboid protease glpG [Escherichia coli KTE113]
gi|431566545|gb|ELI39568.1| rhomboid protease glpG [Escherichia coli KTE124]
gi|431601699|gb|ELI71210.1| rhomboid protease glpG [Escherichia coli KTE137]
gi|431616453|gb|ELI85514.1| rhomboid protease glpG [Escherichia coli KTE145]
gi|431641260|gb|ELJ09003.1| rhomboid protease glpG [Escherichia coli KTE160]
gi|431656707|gb|ELJ23682.1| rhomboid protease glpG [Escherichia coli KTE167]
gi|431658491|gb|ELJ25404.1| rhomboid protease glpG [Escherichia coli KTE168]
gi|431667645|gb|ELJ34225.1| rhomboid protease glpG [Escherichia coli KTE174]
gi|431702582|gb|ELJ67378.1| rhomboid protease glpG [Escherichia coli KTE88]
gi|431717909|gb|ELJ81991.1| rhomboid protease glpG [Escherichia coli KTE94]
gi|431728418|gb|ELJ92098.1| rhomboid protease glpG [Escherichia coli KTE97]
gi|431732395|gb|ELJ95850.1| rhomboid protease glpG [Escherichia coli KTE99]
gi|441606184|emb|CCP97117.1| GlpG protein (membrane protein of glp regulon) [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|441654852|emb|CCQ00461.1| GlpG protein (membrane protein of glp regulon) [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
Length = 274
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 82 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 140 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 188 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 219
>gi|432545139|ref|ZP_19781973.1| rhomboid protease glpG [Escherichia coli KTE236]
gi|432550621|ref|ZP_19787380.1| rhomboid protease glpG [Escherichia coli KTE237]
gi|432623763|ref|ZP_19859780.1| rhomboid protease glpG [Escherichia coli KTE76]
gi|432817169|ref|ZP_20050929.1| rhomboid protease glpG [Escherichia coli KTE115]
gi|431071966|gb|ELD79723.1| rhomboid protease glpG [Escherichia coli KTE236]
gi|431077523|gb|ELD84774.1| rhomboid protease glpG [Escherichia coli KTE237]
gi|431156691|gb|ELE57358.1| rhomboid protease glpG [Escherichia coli KTE76]
gi|431361572|gb|ELG48153.1| rhomboid protease glpG [Escherichia coli KTE115]
Length = 276
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|387784951|ref|YP_006071034.1| hypothetical protein SALIVA_1904 [Streptococcus salivarius JIM8777]
gi|338745833|emb|CCB96199.1| conserved hypothetical, predicted membrane protein (TSM6)
[Streptococcus salivarius JIM8777]
Length = 224
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 28/147 (19%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR++T F HI V H +FNM AL+ +G + EQ+ GT +L L +L+G V+G
Sbjct: 59 WRLVTPIFVHIGVEHFLFNMLALYFMGKMAEQI----FGTLRFLG----LYLLAG--VMG 108
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMT---ILSVKQPSSKLDLFG--FLSLPISFA 165
F L + V A G S +FG IL S L+ G +L+L +
Sbjct: 109 ------NAFTLLFTPNVIAAGASTSLFGLFAAVVILGYYSHSPLLNQLGRNYLALIVI-- 160
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192
+LIF ++ P GHL G++ G
Sbjct: 161 ---NLIF-NLFTPSVGITGHLGGLVGG 183
>gi|408370453|ref|ZP_11168230.1| peptidase S54, rhomboid domain-containing protein [Galbibacter sp.
ck-I2-15]
gi|407744211|gb|EKF55781.1| peptidase S54, rhomboid domain-containing protein [Galbibacter sp.
ck-I2-15]
Length = 247
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 48/218 (22%)
Query: 27 FYIQKKNIG---YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQ 82
F+I + +G Y L + + + W+++T F H +H++FNM ALW+ G +EQ
Sbjct: 18 FFIATQLLGDQMYQWFALWFPENENFYLWQVVTHMFMHGGFMHILFNMYALWAFGTPLEQ 77
Query: 83 LG----------DVGLGTA--------YYLQYTLVLVVLSGLLVLGIYHLLIQ-RFKLEY 123
+ GLG A Y+ L L++ G IY +L + R+ + +
Sbjct: 78 MWGRNKFIFFYFSSGLGAALIHILVNYYHFNSGLQLLLAEGYDKFEIYTILREGRYMITW 137
Query: 124 FRRVT--------------AVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS---FAP 166
++ +VG S ++G + + P+++L L F +P+ F P
Sbjct: 138 EAILSPDGLDNFLGSYISPSVGASGAIYGILVAFGMMFPNAELMLI-FFPIPVKAKYFIP 196
Query: 167 -------FESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
F L +SI+ + HL G + G+ + W
Sbjct: 197 GLILVDLFSGLSGSSILGEGIAHFAHLGGALFGFIMVW 234
>gi|417240695|ref|ZP_12036885.1| rhomboid protease GlpG [Escherichia coli 9.0111]
gi|386212730|gb|EII23174.1| rhomboid protease GlpG [Escherichia coli 9.0111]
Length = 274
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 82 PFFAALRERAGPVTWGVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 140 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 188 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 219
>gi|422784053|ref|ZP_16836836.1| rhomboid family protein [Escherichia coli TW10509]
gi|323974773|gb|EGB69885.1| rhomboid family protein [Escherichia coli TW10509]
Length = 274
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 82 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 140 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 188 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 219
>gi|432949599|ref|ZP_20144380.1| rhomboid protease glpG [Escherichia coli KTE196]
gi|433044938|ref|ZP_20232423.1| rhomboid protease glpG [Escherichia coli KTE117]
gi|431454146|gb|ELH34524.1| rhomboid protease glpG [Escherichia coli KTE196]
gi|431553680|gb|ELI27605.1| rhomboid protease glpG [Escherichia coli KTE117]
Length = 276
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|386626211|ref|YP_006145939.1| rhomboid intramembrane serine protease [Escherichia coli O7:K1 str.
CE10]
gi|349739947|gb|AEQ14653.1| rhomboid intramembrane serine protease [Escherichia coli O7:K1 str.
CE10]
Length = 280
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 88 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 145
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 146 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 193
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 194 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 225
>gi|228478048|ref|ZP_04062659.1| membrane-associated serine protease [Streptococcus salivarius
SK126]
gi|228250228|gb|EEK09481.1| membrane-associated serine protease [Streptococcus salivarius
SK126]
Length = 224
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 28/147 (19%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR++T F HI V H +FNM AL+ +G + EQ+ GT +L L +L+G V+G
Sbjct: 59 WRLVTPIFVHIGVEHFLFNMLALYFMGKMAEQI----FGTLRFLG----LYLLAG--VMG 108
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMT---ILSVKQPSSKLDLFG--FLSLPISFA 165
F L + V A G S +FG IL S L+ G +L+L +
Sbjct: 109 ------NAFTLLFTPNVIAAGASTSLFGLFAAVVILGYYSHSPLLNQLGRNYLALIVI-- 160
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192
+LIF ++ P GHL G++ G
Sbjct: 161 ---NLIF-NLFTPSVGITGHLGGLVGG 183
>gi|183980331|ref|YP_001848622.1| serine protease [Mycobacterium marinum M]
gi|183173657|gb|ACC38767.1| rhomboid family serine protease [Mycobacterium marinum M]
Length = 289
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 38 HVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ--LGDVGLGTAYYL 94
H+ L DG +R++TSAF H LHLVFNM AL+ +G + LG + G Y L
Sbjct: 98 HLALWPPAVADGQLYRLVTSAFMHYGTLHLVFNMWALYIVGPPLEMWLGRLRFGGLYAL 156
>gi|150864296|ref|XP_001383053.2| Rhomboid family proteins Function unknown [Scheffersomyces stipitis
CBS 6054]
gi|149385552|gb|ABN65024.2| Rhomboid family proteins Function unknown [Scheffersomyces stipitis
CBS 6054]
Length = 282
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 129 AVGYSCVVFGWMTILSVKQPSSKLDLFGF------LSLPISFAPFESLIFTSIIVPQASF 182
A+G S +VF ++ L+ K+ + ++ + + LP FAP L + I++P +SF
Sbjct: 127 AIGLSALVFSFLAWLAYKEHFVRPNIVLYRQEGSEIKLPTLFAPVAYLFISMILLPGSSF 186
Query: 183 LGHLSGIIVGYAIA 196
GHL+G+ GY +A
Sbjct: 187 WGHLAGLFAGYFMA 200
>gi|323498065|ref|ZP_08103071.1| GlpG protein [Vibrio sinaloensis DSM 21326]
gi|323316873|gb|EGA69878.1| GlpG protein [Vibrio sinaloensis DSM 21326]
Length = 277
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 38/195 (19%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T ++ +C VI F +Q+ G + + A G W R I+ A H SVLH+ F
Sbjct: 98 PVTLTLMMLCMVI-FSLQQLGAGQAVFAALHFPAFVGQEWQLWRWISHALLHFSVLHIAF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
N+ W LG GD+ LG+ +Q +V LSG G Y + + F +
Sbjct: 157 NLLWWWQLG-----GDIERRLGSTKVIQLFVVSAALSG---AGQYWV-----EGANFGGL 203
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDL------FGFLSLPISF-APFESLIFTSIIVPQA 180
+ V Y+ V + WM L K P L + F + L + F PF ++ T+
Sbjct: 204 SGVVYALVGYLWM--LGYKAPQLGLSMPKPVIGFMLVWLVLGFVQPFMAIANTA------ 255
Query: 181 SFLGHLSGIIVGYAI 195
HL+G++ G I
Sbjct: 256 ----HLAGLVAGVVI 266
>gi|386621064|ref|YP_006140644.1| intra membrane serine protease [Escherichia coli NA114]
gi|417285412|ref|ZP_12072703.1| rhomboid protease GlpG [Escherichia coli TW07793]
gi|417663983|ref|ZP_12313563.1| GlpG protein (membrane protein of glp regulon) [Escherichia coli
AA86]
gi|432448023|ref|ZP_19690319.1| rhomboid protease glpG [Escherichia coli KTE191]
gi|432922550|ref|ZP_20125394.1| rhomboid protease glpG [Escherichia coli KTE173]
gi|432929280|ref|ZP_20130330.1| rhomboid protease glpG [Escherichia coli KTE175]
gi|433025285|ref|ZP_20213257.1| rhomboid protease glpG [Escherichia coli KTE106]
gi|330909456|gb|EGH37970.1| GlpG protein (membrane protein of glp regulon) [Escherichia coli
AA86]
gi|333971565|gb|AEG38370.1| intra membrane serine protease [Escherichia coli NA114]
gi|386250653|gb|EII96820.1| rhomboid protease GlpG [Escherichia coli TW07793]
gi|430971103|gb|ELC88125.1| rhomboid protease glpG [Escherichia coli KTE191]
gi|431435548|gb|ELH17157.1| rhomboid protease glpG [Escherichia coli KTE173]
gi|431440688|gb|ELH22016.1| rhomboid protease glpG [Escherichia coli KTE175]
gi|431531635|gb|ELI08292.1| rhomboid protease glpG [Escherichia coli KTE106]
Length = 274
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 82 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 140 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 188 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 219
>gi|430746399|ref|YP_007205528.1| membrane protein [Singulisphaera acidiphila DSM 18658]
gi|430018119|gb|AGA29833.1| uncharacterized membrane protein [Singulisphaera acidiphila DSM
18658]
Length = 299
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 21/95 (22%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHV-GLSYETAV------------ 47
+ RP + +P T+ +I + SV+ F +Q + G + V LS+ V
Sbjct: 97 LNRP---NLRRRPLTTGLIAV-SVVVFLLQNSSYGGATVNALSFTLRVIDEFGIRRSLGL 152
Query: 48 ----DGHHWRIITSAFSHISVLHLVFNMSALWSLG 78
G WR+IT F H ++LH++FNM LW+LG
Sbjct: 153 LPILHGEVWRLITPIFIHFNILHILFNMWWLWTLG 187
>gi|110803398|ref|YP_698757.1| rhomboid family protein [Clostridium perfringens SM101]
gi|110683899|gb|ABG87269.1| rhomboid family protein [Clostridium perfringens SM101]
Length = 342
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 20/105 (19%)
Query: 39 VGLSYETAV--DGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQ 95
+G + A+ G ++R++TS F H ++HL+FNM AL+ LG +E++ Y +
Sbjct: 189 MGAKHNNAIIFHGEYYRLVTSMFLHSGIVHLLFNMYALYILGDFIERI--------YGAK 240
Query: 96 YTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM 140
LV+ +SG +V I+ L YF V VG S +FG +
Sbjct: 241 KYLVIYFVSG-IVASIFSL--------YFSPVMGVGASGAIFGLL 276
>gi|374581478|ref|ZP_09654572.1| putative membrane protein [Desulfosporosinus youngiae DSM 17734]
gi|374417560|gb|EHQ89995.1| putative membrane protein [Desulfosporosinus youngiae DSM 17734]
Length = 313
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 48/106 (45%), Gaps = 23/106 (21%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
G WR TS F HI +HL+FN+ A WSLG + E+ G T Y LSGL
Sbjct: 176 GEIWRFFTSMFIHIGFMHLIFNLYAFWSLGPFIEERFGHWRFFTIY---------SLSGL 226
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTIL---SVKQPS 149
I F +F + G S +FG + L S+K+PS
Sbjct: 227 ------GGSIASF---FFSPALSAGASGAIFGLLGALFYYSIKRPS 263
>gi|256847477|ref|ZP_05552923.1| rhomboid family protein [Lactobacillus coleohominis 101-4-CHN]
gi|256716141|gb|EEU31116.1| rhomboid family protein [Lactobacillus coleohominis 101-4-CHN]
Length = 220
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 11 EKPATSCIIGIC--SVIWFYIQKKNIGYS---HVGLSYETAV-DGHHWRIITSAFSHISV 64
+ P T +I IC IW +Q + + H G + G WR++T+ F HI +
Sbjct: 7 QMPVTITLIAICVGCYIWTMVQGGSTNLAVLIHSGAKDTPLILQGQWWRLLTAGFLHIGI 66
Query: 65 LHLVFNMSALWSLGV-VEQL 83
HLV NM L+ LG+ VE L
Sbjct: 67 QHLVINMLTLYFLGMYVETL 86
>gi|451927292|gb|AGF85170.1| membrane protein [Moumouvirus goulette]
Length = 165
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 24/137 (17%)
Query: 58 AFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQ 117
F H ++ HL+ N +L+SL +E L +G + + + ++S + +L I H LI
Sbjct: 36 TFYHANLEHLLANSISLYSLSFLEDL----MGHKQFAMAIIFIWIVSSI-ILYIIHALIP 90
Query: 118 RFKLEYFRRVTAVGYSCVVFGWMTI--LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSI 175
R+V VG+S V+FG + I +S+ Q + + L G L +S P +
Sbjct: 91 S------RKVYTVGFSGVIFGLIVIYYMSLGQ-GAGITLTG---LVVSILP-------QL 133
Query: 176 IVPQASFLGHLSGIIVG 192
++P SF GHLSGII G
Sbjct: 134 VIPGISFEGHLSGIIAG 150
>gi|428311879|ref|YP_007122856.1| hypothetical protein Mic7113_3730 [Microcoleus sp. PCC 7113]
gi|428253491|gb|AFZ19450.1| putative membrane protein [Microcoleus sp. PCC 7113]
Length = 244
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 66/160 (41%), Gaps = 28/160 (17%)
Query: 27 FYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG--VVEQLG 84
F + K + YS G+S V +ITS F H S H+ FNM LW G + E+LG
Sbjct: 46 FAVVPKELTYSFNGISVNQPVP-EPLTLITSQFLHASFTHVGFNMLFLWIFGNNIEEELG 104
Query: 85 DVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILS 144
V Y L G+ L Q F V ++G S + G M
Sbjct: 105 RVKFLIFY--------------LACGVLAALTQWF-FSMQSGVPSLGASGAIAGVMGAYI 149
Query: 145 VKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLG 184
+K P +K+ F LP+ F FT++ VP +LG
Sbjct: 150 LKFPRAKVVTF----LPLGF------FFTTVRVPALFYLG 179
>gi|354557489|ref|ZP_08976747.1| Peptidase S54, rhomboid domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353550283|gb|EHC19720.1| Peptidase S54, rhomboid domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 325
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 63/159 (39%), Gaps = 29/159 (18%)
Query: 44 ETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVL 103
E + G WR+ TS F HI LHL FN+ ALW LG + + ++ + + L
Sbjct: 186 ELILQGQVWRLFTSMFIHIGFLHLAFNIYALWILGSFSE--------ERFGRWRFLFIYL 237
Query: 104 SGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTIL---SVKQPSSKLDLFG---F 157
L + L F + G S +FG + L S K P FG
Sbjct: 238 LSGLAGSVTSFL--------FTDALSAGASGAIFGILGALVPYSWKNPRLWKSGFGKNLV 289
Query: 158 LSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
+ + I+ +I PQ HL G+++G AI
Sbjct: 290 VIIAINLG-------IGLIQPQIDIYAHLGGLLIGLAIG 321
>gi|452987621|gb|EME87376.1| hypothetical protein MYCFIDRAFT_209496 [Pseudocercospora fijiensis
CIRAD86]
Length = 243
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 18/153 (11%)
Query: 54 IITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYH 113
II + F H + HL+ N+ +LW G++ DVG GT L + + SG VLG Y
Sbjct: 75 IIGATFRHDTFKHLLSNVVSLWLFGLMLH-DDVGRGT------FLAIYLSSG--VLGAYA 125
Query: 114 LLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS-------FAP 166
L + + G S V G P++K+ +FG+ +PIS F
Sbjct: 126 SLAYNVATKQWMAYV-FGASGSVLGVAAAACTLHPNAKMHIFGY-DIPISAWVFLALFGG 183
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVGYAIAWGL 199
E S + GHL GI++G A A L
Sbjct: 184 LELSAAMSRMTTTIDHAGHLGGIVMGMAAAGAL 216
>gi|226327545|ref|ZP_03803063.1| hypothetical protein PROPEN_01416 [Proteus penneri ATCC 35198]
gi|225204071|gb|EEG86425.1| peptidase, S54 family [Proteus penneri ATCC 35198]
Length = 264
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 13 PATSCIIGICSVIWFYIQKKNIG-YS---HVGLSYETAVDGHHWRIITSAFSHISVLHLV 68
P T +I +C ++ +I ++ +G Y H+ YE +++ WR IT AF H S++H+
Sbjct: 82 PLTVLVIILCILV--FIWQQVVGDYDVMLHLAWPYEESLNLEVWRYITPAFIHFSLMHIA 139
Query: 69 FNMSALWSLG--VVEQLG 84
FN++ W L +QLG
Sbjct: 140 FNLAMWWYLASQTEQQLG 157
>gi|336319156|ref|YP_004599124.1| Rhomboid family protein [[Cellvibrio] gilvus ATCC 13127]
gi|336102737|gb|AEI10556.1| Rhomboid family protein [[Cellvibrio] gilvus ATCC 13127]
Length = 299
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 21/145 (14%)
Query: 52 WRIITSAFSHI--SVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
WR +TSAF H S+ H+V NM ALW++G + QLG V T Y L VV+ +
Sbjct: 107 WRFLTSAFLHSPGSIFHIVLNMVALWTVGPYLEVQLGRVRYATLYLLSAIGGSVVVLLVA 166
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
LG + Y V A G +FG ++ + + G + + + F
Sbjct: 167 ALG--------WSDWYSGVVGASGAVFGLFGAAFVVMWRSGHPAQGMLGVIGVNMVF--- 215
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVG 192
S +VP S+ GHL G++ G
Sbjct: 216 ------SFVVPGISWQGHLGGLVTG 234
>gi|415838999|ref|ZP_11520817.1| rhomboid family protein [Escherichia coli RN587/1]
gi|425279801|ref|ZP_18671025.1| rhomboid protease glpG [Escherichia coli ARS4.2123]
gi|323188986|gb|EFZ74270.1| rhomboid family protein [Escherichia coli RN587/1]
gi|408198693|gb|EKI23916.1| rhomboid protease glpG [Escherichia coli ARS4.2123]
Length = 276
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWMMMIACVVV--FITMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|419760008|ref|ZP_14286293.1| integral membrane protein, Rhomboid family [Thermosipho africanus
H17ap60334]
gi|407515047|gb|EKF49833.1| integral membrane protein, Rhomboid family [Thermosipho africanus
H17ap60334]
Length = 223
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 26/203 (12%)
Query: 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAF 59
M R FY ++ I+ + + F+I + + Y G Y V W RI+TS F
Sbjct: 1 MKRESFYYLIF--VNVFILFLIEIFKFFIPNEAVLYLMFGAQYGPLVSHGQWFRIVTSMF 58
Query: 60 SHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR 118
H +HL+FNM AL+ LG +VE + GT +L + LSG+ + +L Q
Sbjct: 59 VHGGFIHLIFNMYALFFLGRIVENV----YGTEKFLTFYF----LSGI----VGNLATQI 106
Query: 119 FKLEYFRRVTAVGYSCVVFGWMTIL-----SVKQPSSKLDLFGFLSLPISFAPFESLIFT 173
F F +VG S +FG + +L P S + G LP+ I
Sbjct: 107 FYYNSF----SVGASGAIFGLIGVLFAAGFRKDTPYSLKPITGSALLPMIVINIIFGIMP 162
Query: 174 SIIVPQASFL-GHLSGIIVGYAI 195
+ A+ + G L+G+++GY I
Sbjct: 163 GTNINNAAHIGGFLTGMLLGYMI 185
>gi|385809854|ref|YP_005846250.1| hypothetical protein IALB_1272 [Ignavibacterium album JCM 16511]
gi|383801902|gb|AFH48982.1| Hypothetical protein IALB_1272 [Ignavibacterium album JCM 16511]
Length = 267
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W++IT F H H+ FNM ALW G VE + LG+ +L + L + +GLL L
Sbjct: 35 WQLITYQFMHGGFGHIFFNMFALWMFGAEVEYI----LGSKKFLIFYLFSGITAGLLHLF 90
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESL 170
I LL +G S VFG MT ++ P + L+ + + + +
Sbjct: 91 ISPLLGSPL-------AVTIGASGAVFGVMTAFAMLFPDRYIFLYFLIPVKAKYLIGFLI 143
Query: 171 IFTSIIVPQA----SFLGHLSGIIVGY 193
+F + + A + L HL G + G+
Sbjct: 144 VFEFLAIDSAASNVAHLAHLGGALFGF 170
>gi|440705184|ref|ZP_20885986.1| peptidase, S54 family [Streptomyces turgidiscabies Car8]
gi|440273071|gb|ELP61867.1| peptidase, S54 family [Streptomyces turgidiscabies Car8]
Length = 298
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 36 YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQ 95
Y ++G E +G +R++TS F H S++H+VFNM +LW LG + LG A Y
Sbjct: 121 YEYLG-PVEGVAEGQWYRLLTSMFLHGSLMHIVFNMLSLWWLGGPL---EAALGRARY-- 174
Query: 96 YTLVLVVLSGLLVLGIYHLL 115
L L ++SGL + +LL
Sbjct: 175 --LALYLVSGLAGSALTYLL 192
>gi|420152492|ref|ZP_14659536.1| peptidase, S54 family [Actinomyces massiliensis F0489]
gi|394764617|gb|EJF46356.1| peptidase, S54 family [Actinomyces massiliensis F0489]
Length = 279
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 22/151 (14%)
Query: 50 HHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
WR +T+AF H S++HL FNM ALW LG +E + LG + L L G +
Sbjct: 110 QPWRFMTTAFLHASLMHLAFNMWALWVLGSALEPI----LGR-WRFAALCALSALGGSTM 164
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLD---LFGFLSLPISFA 165
IY L + + VG S VFG L + Q D + G L L ++
Sbjct: 165 --IYWLASPTAPASWL--TSTVGASGAVFGLFAALFIIQRRFGRDTSAIVGLLVLNLAI- 219
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
S I S+ GHL G++ G +A
Sbjct: 220 --------SFIGANISWQGHLGGLVTGAIVA 242
>gi|296105116|ref|YP_003615262.1| intramembrane serine protease GlpG [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059575|gb|ADF64313.1| intramembrane serine protease GlpG [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 276
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 19/152 (12%)
Query: 4 PLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLS----YETAVDGHHWRIITSAF 59
P I E+ ++ + + I +I +G V ++ Y+ ++D WR T A
Sbjct: 84 PFLATIRERAGPFTLLLMAACIIVFIIMNVVGDQSVMIALAWPYDPSLDFDVWRYFTHAL 143
Query: 60 SHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR 118
H SV+H++FN+ W L G VE+ LG+ + TL+ +LSG + +
Sbjct: 144 MHFSVMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ--------HK 191
Query: 119 FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
F +F ++ V Y+ + + W+ + P S
Sbjct: 192 FSGPWFGGLSGVVYALMGYVWLR--GERDPES 221
>gi|223984557|ref|ZP_03634688.1| hypothetical protein HOLDEFILI_01983 [Holdemania filiformis DSM
12042]
gi|223963485|gb|EEF67866.1| hypothetical protein HOLDEFILI_01983 [Holdemania filiformis DSM
12042]
Length = 424
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 16/83 (19%)
Query: 14 ATSCIIGIC------SVIWFYIQKKNIGYSHVGLS--------YETAVDGHH--WRIITS 57
AT ++GIC SV++ ++ K G V +S Y+ V G H WR +TS
Sbjct: 164 ATMILMGICLVIYLLSVVFSWMFKDLGGSGEVSVSVAILLGGYYKAFVVGAHEYWRWLTS 223
Query: 58 AFSHISVLHLVFNMSALWSLGVV 80
AF H+ + HL+ NM AL+++G++
Sbjct: 224 AFVHVDLWHLLMNMMALYNMGML 246
>gi|333908196|ref|YP_004481782.1| rhomboid family protein [Marinomonas posidonica IVIA-Po-181]
gi|333478202|gb|AEF54863.1| Rhomboid family protein [Marinomonas posidonica IVIA-Po-181]
Length = 294
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 27 FYIQKKNIGYSHV---GLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQL 83
F I N+ H+ LS + G +WR++T AF H SV+H+VFN +W +G +
Sbjct: 116 FTISPFNVSNGHIYFMTLS-DVMAKGEYWRLLTPAFLHFSVIHIVFNCLWVWDVG---RK 171
Query: 84 GDVGLGTAYYLQYTLVLVVLSGLL 107
++ +G +L L+ VLS +L
Sbjct: 172 LEMMVGKFVWLFSVLITAVLSNVL 195
>gi|378732203|gb|EHY58662.1| glycosylphosphatidylinositol transamidase [Exophiala dermatitidis
NIH/UT8656]
Length = 284
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 21/179 (11%)
Query: 23 SVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ 82
+W IQ ++ +G G +R+ T AF H H++ M A+ + ++E+
Sbjct: 52 QTVWSVIQWGSLAPKEIGF-------GSLYRLNTFAFIHNGFWHML--MDAICLIPLLER 102
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
+ GT L + + G + GIY LL+ L VG S VF +
Sbjct: 103 F-EAEWGT---LNSLALFMGPLGQIPAGIY-LLLDGVILR--DNTPVVGSSIWVFLLLAS 155
Query: 143 LSVK--QPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGL 199
S+K + + ++ G +P +P L+ TS ++P SFLGHLSG I GY WGL
Sbjct: 156 ESIKTYKANPHFEISGH-QIPTWISPLVILVVTSALIPNTSFLGHLSGCITGY--LWGL 211
>gi|319640216|ref|ZP_07994942.1| transmembrane rhomboid family protein [Bacteroides sp. 3_1_40A]
gi|317388203|gb|EFV69056.1| transmembrane rhomboid family protein [Bacteroides sp. 3_1_40A]
Length = 233
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 46/191 (24%)
Query: 39 VGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYT 97
+GL + A D + ++IT F H H+ FNM ALW G +EQ+ G +L Y
Sbjct: 36 LGLHFFMASDFNPAQLITYMFMHGGFQHIFFNMFALWMFGRTLEQV----WGPKRFLSYY 91
Query: 98 LVLVVLSGL---LVLGIYHLLIQRFKL--------------------EYFRRVTAVGYSC 134
+V + +GL LV I ++ +Q + EY +T VG S
Sbjct: 92 MVCGIGAGLVQELVQYIQYVTVQYIQYVTELSQYDSVNTGIAVIPMAEYLNLMTTVGASG 151
Query: 135 VVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLG---------- 184
++G + + P+S++ +F PI F P ++ F FLG
Sbjct: 152 AIYGILLAFGMLFPNSQMFVF-----PIPF-PVKAKYFVMGYAALEIFLGLGASTDGVAH 205
Query: 185 --HLSGIIVGY 193
HL G+I G+
Sbjct: 206 FAHLGGMIFGF 216
>gi|336176302|ref|YP_004581677.1| rhomboid family protein [Frankia symbiont of Datisca glomerata]
gi|334857282|gb|AEH07756.1| Rhomboid family protein [Frankia symbiont of Datisca glomerata]
Length = 377
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
Query: 46 AVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVV 102
A + ++R++T+AF H VLH++FNM AL+ LG +EQ+ LG A YL +V +
Sbjct: 201 AANDEYYRLLTAAFLHAGVLHILFNMYALYLLGSQLEQI----LGRARYLALFVVCAI 254
>gi|453362588|dbj|GAC81512.1| hypothetical protein GM1_036_00120 [Gordonia malaquae NBRC 108250]
Length = 234
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 34/156 (21%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGL 106
D +WR++TS F H SV HL NM +L+ +G +E+ LG YL LV ++
Sbjct: 59 DDQYWRLLTSGFLHQSVPHLAINMFSLYIIGADLER----ALGRGRYLAIYLVSLLGGSA 114
Query: 107 LVLGIYHLLIQRFKLEYFRRVTA-VGYSCVVFGWM-----TILSVKQPSSKLDLFGFLSL 160
V + + VTA G S ++G M +L VK P + G +++
Sbjct: 115 AV------------MAFQSGVTATAGASGAIYGLMGALLILLLRVKAPVQT--VLGVIAI 160
Query: 161 PISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
I S+ +P S GHL G++ G A A
Sbjct: 161 N---------IVISVTIPGISLFGHLGGLVFGAAAA 187
>gi|443488760|ref|YP_007366907.1| rhomboid family serine protease [Mycobacterium liflandii 128FXT]
gi|442581257|gb|AGC60400.1| rhomboid family serine protease [Mycobacterium liflandii 128FXT]
Length = 254
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 38 HVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG 78
H+ L DG +R++TSAF H LHLVFNM AL+ +G
Sbjct: 63 HLALWPPAVADGQLYRLVTSAFMHYGTLHLVFNMWALYIVG 103
>gi|410634407|ref|ZP_11345044.1| GlpG protein [Glaciecola arctica BSs20135]
gi|410146263|dbj|GAC21911.1| GlpG protein [Glaciecola arctica BSs20135]
Length = 290
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 6 FYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETA---VD-GHHWRIITSAFSH 61
Y++ + P TS I+ IC +I + + + ++ L + VD G WR++ A H
Sbjct: 95 LYDLKQAPFTSSILAICLLI-YLLAMVGVSAPYLWLKIQPIAMLVDTGQWWRLLGPALIH 153
Query: 62 ISVLHLVFNMSALWSLG 78
SVLH+ FN+ W+LG
Sbjct: 154 FSVLHIAFNLLWWWTLG 170
>gi|452206496|ref|YP_007486618.1| rhomboid family protein [Natronomonas moolapensis 8.8.11]
gi|452082596|emb|CCQ35857.1| rhomboid family protein [Natronomonas moolapensis 8.8.11]
Length = 326
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 20/149 (13%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W + S FSH HL+FN AL+ G +VE+ +G+ + L VL+GL +G
Sbjct: 154 WTWVVSVFSHGGPSHLLFNAIALYFFGPIVERQ----VGSRKFAALFLASGVLAGLGQVG 209
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS-----FA 165
+ L +V +G S + M +L+V P K+ LF F+ + I FA
Sbjct: 210 V--------GLVTGEQVAVLGASGALMAIMGVLAVTSPDLKVLLFFFIPMSIRTLTVLFA 261
Query: 166 PFESLIFTSI--IVPQASFLGHLSGIIVG 192
F F + I+ + HL G+++G
Sbjct: 262 AFSIFAFVADGGILSGVAHFAHLVGLVIG 290
>gi|417282005|ref|ZP_12069305.1| rhomboid protease GlpG [Escherichia coli 3003]
gi|386246334|gb|EII88064.1| rhomboid protease GlpG [Escherichia coli 3003]
Length = 274
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 82 PFFAALRERAGPVTWMMMIACVVV--FITMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 140 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 188 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 219
>gi|23099378|ref|NP_692844.1| hypothetical protein OB1923 [Oceanobacillus iheyensis HTE831]
gi|22777607|dbj|BAC13879.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 518
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 18/87 (20%)
Query: 2 GRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYS-------HVGLSYETAV-DGHHWR 53
G+PLF I+ I ++F++Q+ N G S +G Y + +G WR
Sbjct: 183 GKPLFTYIL----------IALNLFFFLQQINNGGSENIDTLIQMGAKYNPLIMEGEWWR 232
Query: 54 IITSAFSHISVLHLVFNMSALWSLGVV 80
++TS F HI +H++ NM AL+ LG
Sbjct: 233 LLTSMFLHIGFVHILMNMVALFYLGTA 259
>gi|320039359|gb|EFW21293.1| rhomboid protein 2 [Coccidioides posadasii str. Silveira]
Length = 268
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 124 FRRVTAV-GYSCVVFGWMTILSVKQPSSKLDL-FGFLSLPISFAPFESLIFTSIIVPQAS 181
FR+ TA+ G S VF + ++K +S G +P P IF S ++P S
Sbjct: 126 FRQDTAILGSSIWVFLLLASEAMKTYASNPHFSLGTYKIPTWATPLIGTIFVSALIPNTS 185
Query: 182 FLGHLSGIIVGYAIAWG 198
F+GHL GI VGYA+ G
Sbjct: 186 FVGHLCGIAVGYALGLG 202
>gi|91227496|ref|ZP_01261833.1| GlpG protein [Vibrio alginolyticus 12G01]
gi|91188520|gb|EAS74812.1| GlpG protein [Vibrio alginolyticus 12G01]
Length = 280
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRI---ITSAFSHISVLHLVF 69
P T I+ +C +I + +Q G L + A +G W++ ++ A H SV H+VF
Sbjct: 98 PMTLLIMTVCIII-YLLQMFGFGNGVFKLLHFPAFEGQQWQVWRWLSHALLHFSVTHIVF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ LG+ LQ +V LSG
Sbjct: 157 NLLWWWQLG-----GDIERRLGSGKLLQLFVVSAALSG 189
>gi|365961480|ref|YP_004943047.1| rhomboid family protein [Flavobacterium columnare ATCC 49512]
gi|365738161|gb|AEW87254.1| rhomboid family protein [Flavobacterium columnare ATCC 49512]
Length = 246
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 47/224 (20%)
Query: 18 IIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSL 77
II + I Y+ K++ S + L Y + W+++T F H S H++FNM AL+S
Sbjct: 13 IINVICFIGAYLVKQSD--SVLALYYFENTNFRSWQLLTYMFMHGSFTHILFNMFALYSF 70
Query: 78 GVVEQ------------------LGDVGLGTAY-YLQYTLVLVVLSGLLVLGIYHLLIQ- 117
G + G + G Y + Q L L++ +G + I +L +
Sbjct: 71 GTALEHFWGAKKFLFFYISCGIGAGLIHSGVNYIHFQEGLNLLLENGEKKIEILEILKEG 130
Query: 118 RFKLEYFRRVT--------------AVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
++KL + +T AVG S ++G +T + P+++L + F+ +PI
Sbjct: 131 KYKLSWEEILTQQELTSFISTYLSRAVGASGAIYGLLTAFAFMFPNAELMMM-FIPVPIK 189
Query: 164 ---FAP-------FESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
F P F + +SI + H+ G ++G+ + W
Sbjct: 190 AKYFVPIVVGLDLFSGVTGSSIFGGNIAHFAHVGGALIGFLMMW 233
>gi|353235267|emb|CCA67283.1| hypothetical protein PIIN_01116 [Piriformospora indica DSM 11827]
Length = 211
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 24/168 (14%)
Query: 36 YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSL--GVVEQLGDVGLGTAYY 93
Y + S E G W ++TSAF+H + HL N LW V + LG
Sbjct: 50 YENSTSSAENIRQGRLWTLVTSAFAHQATDHLFMNTLGLWMFCPAVAQSLG--------- 100
Query: 94 LQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLD 153
Y + V L+G +G + + + R + A G C + M+ + P + +
Sbjct: 101 -SYAFLKVYLTG--AIGCDLMSAYWNQNRFTRSMGASGALCAI---MSFTACMSPRASVA 154
Query: 154 LFGFLSLPISFAPFESLIFTSIIVPQA------SFLGHLSGIIVGYAI 195
L+G + +P+ +A + + ++ F GH+ G + G +
Sbjct: 155 LYGIIPMPL-WAVVAGIFLYDLYGARSRGHVSTDFAGHIGGTLTGMGL 201
>gi|119194665|ref|XP_001247936.1| hypothetical protein CIMG_01707 [Coccidioides immitis RS]
gi|392862824|gb|EAS36506.2| rhomboid protein 2 [Coccidioides immitis RS]
Length = 268
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 124 FRRVTAV-GYSCVVFGWMTILSVKQPSSKLDL-FGFLSLPISFAPFESLIFTSIIVPQAS 181
FR+ TA+ G S VF + ++K +S G +P P IF S ++P S
Sbjct: 126 FRQDTAILGSSIWVFLLLASEAMKTYASNPHFSLGTYKIPTWATPLIGTIFVSALIPNTS 185
Query: 182 FLGHLSGIIVGYAIAWG 198
F+GHL GI VGYA+ G
Sbjct: 186 FVGHLCGIAVGYALGLG 202
>gi|50547373|ref|XP_501156.1| YALI0B20878p [Yarrowia lipolytica]
gi|74635233|sp|Q6CDV6.1|RBD2_YARLI RecName: Full=Rhomboid protein 2
gi|49647022|emb|CAG83409.1| YALI0B20878p [Yarrowia lipolytica CLIB122]
Length = 297
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 17/142 (11%)
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
H + HL+ N+ AL +V Q V GT ++ +VL +L+ +V I L+
Sbjct: 67 HATWFHLLLNLVALQP--IVSQFERVN-GT---VRTGIVLNILA--VVTAIPWCLL---S 115
Query: 121 LEYFRRVTAVGYSCVVFG----WMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSII 176
+ +F +G S +F W S KQP+++L L +P P L+ +I+
Sbjct: 116 IGFFPDEAVLGSSAWIFSFMGYWAIRESSKQPTTQLA--PNLVVPTWLLPIIYLVVIAIV 173
Query: 177 VPQASFLGHLSGIIVGYAIAWG 198
+P +SF+GHL G+I G+ +A G
Sbjct: 174 IPSSSFIGHLLGLIAGWMMALG 195
>gi|325000791|ref|ZP_08121903.1| serine peptidase [Pseudonocardia sp. P1]
Length = 254
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 79/181 (43%), Gaps = 37/181 (20%)
Query: 31 KKNIGYSHVGLSYETAVD---GHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDV 86
+N GL T VD G WR++T+ F HI LHL FNM ALW +G VE +
Sbjct: 67 NRNFDSPLFGLGALTPVDVADGQLWRLVTAGFLHIGPLHLAFNMFALWVIGREVEAV--- 123
Query: 87 GLGTAYYLQ-YTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSV 145
LG A + Y + L+ S ++L L TA G S VFG M L V
Sbjct: 124 -LGRARFTAVYGVSLLGGSAAVML-----------LSNPLGPTA-GASGAVFGLMGALFV 170
Query: 146 KQ-----PSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLI 200
P+ ++ +++ ISF + S+ GHL G++ G A+ L+
Sbjct: 171 LLRRLRLPAGQVIGVIAINVVISF-----------TLQGISWQGHLGGLVFGAAVTAALV 219
Query: 201 H 201
+
Sbjct: 220 Y 220
>gi|321159600|pdb|2XTV|A Chain A, Structure Of E.Coli Rhomboid Protease Glpg, Active Site
Mutant, S201t, Orthorhombic Crystal Form
Length = 180
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITSAFSHISVLHLV 68
P T ++ C V+ +I + +G V L ++ + WR T A H S++H++
Sbjct: 3 PVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHIL 60
Query: 69 FNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
FN+ W L G VE+ LG+ + TL+ +LSG + Q+F +F +
Sbjct: 61 FNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ--------QKFSGPWFGGL 108
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDL 154
T V Y+ + + W+ + P S + L
Sbjct: 109 TGVVYALMGYVWLR--GERDPQSGIYL 133
>gi|334702540|ref|ZP_08518406.1| GlpG protein [Aeromonas caviae Ae398]
Length = 288
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 25/156 (16%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSG 105
D WR +T AF H SVLHLVFN+ W L G +EQ +G G + L L+V +
Sbjct: 145 TDWQAWRYVTPAFIHFSVLHLVFNLLWWWYLGGQIEQ--RLGSGKLFIL-----LIVGAA 197
Query: 106 LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165
L + + + RF ++ V Y+ + + W+ + QP L++P +
Sbjct: 198 LPNIAEFFVSGPRFG-----GLSGVVYALLGYSWLR--TRLQPDCG------LAMPPALM 244
Query: 166 PFE----SLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
F L F ++ + + HL G++VG A W
Sbjct: 245 GFMLVWLVLGFLDMLGTPTANMAHLVGLLVGLAQGW 280
>gi|227494200|ref|ZP_03924516.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
gi|226831934|gb|EEH64317.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
Length = 309
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 77/164 (46%), Gaps = 20/164 (12%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
WR +T H ++HL NM +L+ +G L V LGT Y L L V SG L +
Sbjct: 132 WRFLTVMLVHGGLIHLALNMYSLYLVG--NSLERV-LGTYRY----LALYVASG-LGGSL 183
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
LL L+ F VT VG S +FG + V Q S +D ++ I A +L
Sbjct: 184 AVLLWAMVSLDSFYHVT-VGASGAIFGLFAAVYVVQRKSGMDA---RAMGILLAVNLALG 239
Query: 172 FTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWI 215
FT + S+ GHL G+IVG ++ L+ +AL GW+
Sbjct: 240 FT---ISNVSWQGHLGGMIVGALMSLALLR-----FALPRPGWL 275
>gi|269968650|ref|ZP_06182647.1| glpG protein [Vibrio alginolyticus 40B]
gi|269826737|gb|EEZ81074.1| glpG protein [Vibrio alginolyticus 40B]
Length = 269
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRI---ITSAFSHISVLHLVF 69
P T I+ +C +I + +Q G L + A +G W++ ++ A H SV H+VF
Sbjct: 87 PMTLLIMTVCIII-YLLQMFGFGNGVFKLLHFPAFEGQQWQVWRWLSHALLHFSVTHIVF 145
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ LG+ LQ +V LSG
Sbjct: 146 NLLWWWQLG-----GDIERRLGSGKLLQLFVVSAALSG 178
>gi|443670730|ref|ZP_21135859.1| Rhomboid family protein [Rhodococcus sp. AW25M09]
gi|443416665|emb|CCQ14196.1| Rhomboid family protein [Rhodococcus sp. AW25M09]
Length = 251
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 30/158 (18%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQ-YTLVLVVLSGL 106
+G +R+I S F HI +HL+ NM AL+ +G +L LG + YL Y L L+ S
Sbjct: 70 NGDLFRLIGSGFVHIGPIHLLVNMFALYLIGRDVEL---ILGRSRYLAVYFLSLLGGSAS 126
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
+++ LE TA G S VFG + +V L L S AP
Sbjct: 127 VMV-----------LENPLAATA-GASGAVFGLLGAQAVI----------LLRLKRSPAP 164
Query: 167 FESL----IFTSIIVPQASFLGHLSGIIVGYAIAWGLI 200
+ IF S+ +P S GH+ G++ G A+ GL+
Sbjct: 165 VLIIIALNIFISVSIPSISLWGHMGGLVAGAAVTAGLV 202
>gi|430376422|ref|ZP_19430825.1| rhomboid-like protein [Moraxella macacae 0408225]
gi|429541653|gb|ELA09681.1| rhomboid-like protein [Moraxella macacae 0408225]
Length = 265
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 55/119 (46%), Gaps = 30/119 (25%)
Query: 4 PLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW----------- 52
PL + P T ++GIC V+ F +Q + V S T D W
Sbjct: 16 PLVLGLRHYPYTLGLLGIC-VVLFVLQV----LTGVDASSPTVQDLLKWGANFLPLTMGN 70
Query: 53 ---RIITSAFSHISVLHLVFNMSALWSLG-VVEQL-GDVGLGTAYYLQYTLVLVVLSGL 106
R+ITS HI +LHL+FNM AL+ G V EQ+ G + L L+L VLSG+
Sbjct: 71 EPFRLITSLVLHIGLLHLMFNMYALYYFGQVAEQMIGSINL---------LILFVLSGI 120
>gi|321159599|pdb|2XTU|A Chain A, Structure Of E.Coli Rhomboid Protease Glpg Active Site
Mutant, S201t In Trigonal Crystal Form
Length = 181
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITSAFSHISVLHLV 68
P T ++ C V+ +I + +G V L ++ + WR T A H S++H++
Sbjct: 5 PVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHIL 62
Query: 69 FNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
FN+ W L G VE+ LG+ + TL+ +LSG + Q+F +F +
Sbjct: 63 FNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ--------QKFSGPWFGGL 110
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDL 154
T V Y+ + + W+ + P S + L
Sbjct: 111 TGVVYALMGYVWLR--GERDPQSGIYL 135
>gi|449126889|ref|ZP_21763164.1| hypothetical protein HMPREF9733_00567 [Treponema denticola SP33]
gi|448945092|gb|EMB25967.1| hypothetical protein HMPREF9733_00567 [Treponema denticola SP33]
Length = 209
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 37 SHVGLSYETAVDGH-HWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYL 94
+++GL V+ +W+ T F H HL FNM AL+ GV VE+ +GT ++
Sbjct: 38 TYLGLVPILVVEAQTYWQFFTYQFVHGDFFHLAFNMLALFFFGVPVER----KIGTKEFI 93
Query: 95 QYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
Y L++ + G+L +Y F ++ VG S +FG + + +V P+S + L
Sbjct: 94 LYYLLIGTIDGVLSFLVY-------AATGFYIISLVGASGAIFGVLLLYAVIYPNSVVYL 146
Query: 155 FGFLSLP 161
+ + +P
Sbjct: 147 WAVIPVP 153
>gi|402298353|ref|ZP_10818053.1| rhomboid protein membrane-associated serine peptidase [Bacillus
alcalophilus ATCC 27647]
gi|401726454|gb|EJS99682.1| rhomboid protein membrane-associated serine peptidase [Bacillus
alcalophilus ATCC 27647]
Length = 519
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 38 HVGLSYETAV-DGHHWRIITSAFSHISVLHLVFNMSALWSLGVV 80
VG Y + DG WRIITS F HI LHL+ N AL+ LG +
Sbjct: 220 EVGAKYSPLILDGEWWRIITSMFIHIGFLHLLMNSLALYFLGTL 263
>gi|334564482|ref|ZP_08517473.1| hypothetical protein CbovD2_07894 [Corynebacterium bovis DSM 20582]
Length = 198
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 33/195 (16%)
Query: 12 KPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVD----------GHHWRIITSAFSH 61
PATS I C V++ ++ + A D G WR+ TSA H
Sbjct: 11 APATSVFIIACVVVYLVTAAQSGSLTAPAAGSPLAWDLVVTRPSVEAGGWWRLATSALVH 70
Query: 62 ISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKL 121
+ V H+V NM +G+V + + G+ +VV G+L+ + +
Sbjct: 71 LGVTHIVLNM---LLIGLVGRDLERSYGS---------VVVAVGMLLTAVGGSVGSVLMD 118
Query: 122 EYFRRVTAV-GYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
Y TA+ G S + +G +L + S + DL G ++L I +L+FT + P
Sbjct: 119 PY----TAMGGASTIGYGMFAMLVARSASRREDLRGPVTLII-----VNLVFT-LASPGV 168
Query: 181 SFLGHLSGIIVGYAI 195
S GH+ G++VG I
Sbjct: 169 SLWGHIGGLVVGAVI 183
>gi|365992034|ref|XP_003672845.1| hypothetical protein NDAI_0L01170 [Naumovozyma dairenensis CBS 421]
gi|410729917|ref|XP_003671137.2| hypothetical protein NDAI_0G01180 [Naumovozyma dairenensis CBS 421]
gi|401779956|emb|CCD25894.2| hypothetical protein NDAI_0G01180 [Naumovozyma dairenensis CBS 421]
Length = 362
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 42/167 (25%)
Query: 51 HWRIITSAFSHISVLHLVFNMSALWSLGVVEQ--LGDVG----------LGTAYYLQYTL 98
+W II SAFSH HL NM ALWS G LG G +G+ + L Y
Sbjct: 189 NWSIIGSAFSHQEFWHLGMNMLALWSFGTTLSTVLGASGFFSLYMNSAIMGSLFSLWYPR 248
Query: 99 VLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL 158
+ + GLLV+G ++G S +FG + S P+SK+ LF F
Sbjct: 249 IARM--GLLVMG-----------------PSLGASGALFGVLGCFSYLFPTSKILLFVF- 288
Query: 159 SLPISFAPFESLIFTSI------IVPQASF--LGHLSGIIVGYAIAW 197
P+ + + + + + ++ SF HL G ++G A W
Sbjct: 289 --PVPGGAWVAFLASVVWNGAGCVLKWGSFDYAAHLGGSLIGVAYGW 333
>gi|383456807|ref|YP_005370796.1| rhomboid family protein [Corallococcus coralloides DSM 2259]
gi|380730049|gb|AFE06051.1| rhomboid family protein [Corallococcus coralloides DSM 2259]
Length = 252
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
G +WR++ F H +HL+FNM A++SLG + G+G+ +L +LV L G
Sbjct: 92 GEYWRLLGMVFEHGGAMHLLFNMLAVYSLGASLE---RGIGSLRFLGLSLV-TALGG--- 144
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGW----MTILSVKQPSSKLDLFGFLSLPISF 164
F L + VG S ++ GW + IL+ Q + +F + + +
Sbjct: 145 --------SAFALFFNFDTVTVGASGMILGWGGAMLPILT--QQGRREHMFWLVQVAV-- 192
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNY 206
++P S+ GHL G + G L G Y
Sbjct: 193 ---------ISLLPGVSWAGHLGGFVFGLPCGMALRMGPKVY 225
>gi|415810590|ref|ZP_11502957.1| rhomboid family protein [Escherichia coli LT-68]
gi|323174058|gb|EFZ59686.1| rhomboid family protein [Escherichia coli LT-68]
Length = 276
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G +E+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAMEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|283835815|ref|ZP_06355556.1| hypothetical protein CIT292_10213 [Citrobacter youngae ATCC 29220]
gi|291067984|gb|EFE06093.1| rhomboid protease GlpG [Citrobacter youngae ATCC 29220]
Length = 277
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P + E+ P T ++ C ++ +I +G V L ++ ++ WR T
Sbjct: 84 PFLATLRERAGPVTWVVMAACILV--FIAMNVVGDQAVMLWLAWPFDPSLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
AF H S++H++FN+ W L G VE+ LG+ + T++ +LSG +
Sbjct: 142 AFMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITVISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|366161751|ref|ZP_09461613.1| intramembrane serine protease GlpG [Escherichia sp. TW09308]
Length = 276
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C ++ +I + +G V L ++ + WR T
Sbjct: 84 PFFATLRERAGPVTWVVMIACVLV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|335436329|ref|ZP_08559126.1| Rhomboid family protein [Halorhabdus tiamatea SARL4B]
gi|335438571|ref|ZP_08561308.1| Rhomboid family protein [Halorhabdus tiamatea SARL4B]
gi|334890978|gb|EGM29235.1| Rhomboid family protein [Halorhabdus tiamatea SARL4B]
gi|334897865|gb|EGM35992.1| Rhomboid family protein [Halorhabdus tiamatea SARL4B]
Length = 210
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 40/193 (20%)
Query: 10 MEKP----ATSCIIGICSVIWFYIQKKNI-GYSHVGLSYETAVDGHHWRIITSAFSHISV 64
+E+P T+ +IG+ V++ + + + G S V L+ + W ++TS F H V
Sbjct: 4 VERPDRGSPTTTLIGVLVVVFLFQRLLEVFGGSPVALALAWPIADRPWTLLTSVFVHRRV 63
Query: 65 LHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYF 124
HLV N AL+ +G+V + T + Y LVV + V G + + +
Sbjct: 64 FHLVPNALALFVIGLVLE-----RRTEPWRFYAFFLVVGA---VAGAMEVTVAQ---ALG 112
Query: 125 RRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIV-PQASFL 183
RRV +G S VFG LFG+L ++ PF + I V P+ + L
Sbjct: 113 RRVAVLGASGAVFG---------------LFGYL---LAGNPFTDAVADRISVDPRVAIL 154
Query: 184 GHLSGIIVGYAIA 196
+++G A+A
Sbjct: 155 -----VVIGVALA 162
>gi|282880538|ref|ZP_06289245.1| peptidase, S54 (rhomboid) family protein [Prevotella timonensis
CRIS 5C-B1]
gi|281305641|gb|EFA97694.1| peptidase, S54 (rhomboid) family protein [Prevotella timonensis
CRIS 5C-B1]
Length = 305
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 28/200 (14%)
Query: 18 IIGICSVIWFYIQKKNIG-YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWS 76
II I + Y + I S +GL + A D +++ T F H S HL FNM ALW
Sbjct: 13 IINILAFAAMYALRSTIDLNSLLGLHFFIASDFRIYQLFTYMFMHASFEHLFFNMFALWM 72
Query: 77 LG-VVEQLG----------DVGLGTAYY---LQYTLVLVVLSGLLVLGIYHLLIQRFKL- 121
G VVE++ G+G + QY LV GL L R +
Sbjct: 73 FGCVVERVWGPKKFLFFYLTCGVGAGLFQEMAQYGSFLV--EGLPAYDSVQLEGLRISMD 130
Query: 122 EYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA- 180
E+ R T VG S V+G + + P ++ +F L +PI A + +++ I + A
Sbjct: 131 EFLNRWTTVGASGAVYGLLLAFGMIFPEERIFIFP-LPIPIK-AKWFVILYAGISLVMAL 188
Query: 181 -------SFLGHLSGIIVGY 193
+ HL G++VG+
Sbjct: 189 TTTGGNVAHFAHLGGMVVGF 208
>gi|432373978|ref|ZP_19617009.1| rhomboid protease glpG [Escherichia coli KTE11]
gi|430893400|gb|ELC15724.1| rhomboid protease glpG [Escherichia coli KTE11]
Length = 276
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C ++ +I + +G V L ++ + WR T
Sbjct: 84 PFFATLRERAGPVTWVVMIACVLV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|441514647|ref|ZP_20996463.1| rhomboid family protein [Gordonia amicalis NBRC 100051]
gi|441450558|dbj|GAC54424.1| rhomboid family protein [Gordonia amicalis NBRC 100051]
Length = 294
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLV 99
G +WR++TS F H SV+H+ NM +L+ LG +L LG A YL L+
Sbjct: 113 GEYWRLLTSGFLHFSVMHVAVNMLSLYILGRDLEL---ALGMARYLAVYLI 160
>gi|381399873|ref|ZP_09924890.1| Rhomboid family protein [Microbacterium laevaniformans OR221]
gi|380772836|gb|EIC06523.1| Rhomboid family protein [Microbacterium laevaniformans OR221]
Length = 281
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 18 IIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSL 77
+IG+ I Y+Q N+ H L+Y WR++T H S+ H+ FNM ALW+L
Sbjct: 92 LIGLIPGIGLYVQ--NLLAFHAQLAYV-----QPWRLLTVTLVHASIFHIAFNMLALWAL 144
Query: 78 G 78
G
Sbjct: 145 G 145
>gi|149912353|ref|ZP_01900910.1| membrane protein, Rhomboid family [Moritella sp. PE36]
gi|149804569|gb|EDM64643.1| membrane protein, Rhomboid family [Moritella sp. PE36]
Length = 192
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 18 IIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSL 77
I+G+ +I + I +NI + + + E+ ++G +WR+I+ F+H ++ HL+ N+ AL +
Sbjct: 12 ILGLLCLIIYAISAENI--TVLDYNRESIINGEYWRLISGNFNHTNIYHLLLNLGALAVI 69
Query: 78 G 78
G
Sbjct: 70 G 70
>gi|145348648|ref|XP_001418758.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578988|gb|ABO97051.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 351
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 12/168 (7%)
Query: 41 LSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYY--LQYTL 98
L++E + +H R+ TS FSH S H + N A + + +GT ++ L T
Sbjct: 50 LAFEHPLSSYH-RVWTSTFSHGSFPHALLNCLAFVPMASALERS---IGTTHFAWLFATF 105
Query: 99 VLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL 158
+ + ++ Y A+G S VVF + + + +FG
Sbjct: 106 AHAAYALSASAATALWMALGYRASY--ESCAIGMSGVVFALIVCETNVNDVERRSVFGLF 163
Query: 159 SLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNY 206
++ + P L+F +++P SF+GH GI G W + G N+
Sbjct: 164 TVSSEYYPIALLLFIQLLMPGVSFIGHAGGIAAG----WLYVRGYLNF 207
>gi|417918105|ref|ZP_12561658.1| peptidase, S54 family [Streptococcus parasanguinis SK236]
gi|342829096|gb|EGU63457.1| peptidase, S54 family [Streptococcus parasanguinis SK236]
Length = 225
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 23/149 (15%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
WRI+T+ F HI + H V NM L+ LG +L + G+ + L L +LSG++
Sbjct: 59 WRIVTATFVHIGLEHFVLNMITLYYLG---RLAEDLFGSKAF----LALYLLSGMMG--- 108
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
++ + F + V A G S +FG + + + LS + SLI
Sbjct: 109 -NVFVAIFTPD----VIAAGASTALFGLFGTIGALRFIVQSPYIRHLS-----QSYTSLI 158
Query: 172 FTSII---VPQASFLGHLSGIIVGYAIAW 197
++I +P+ S GH+ G++ G +A+
Sbjct: 159 LVNLIFSFMPRISMAGHIGGLVAGVMLAY 187
>gi|340621452|ref|YP_004739903.1| hypothetical protein Ccan_06760 [Capnocytophaga canimorsus Cc5]
gi|339901717|gb|AEK22796.1| Uncharacterized protein C13E711 [Capnocytophaga canimorsus Cc5]
Length = 214
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
G +WR+ TS F H HL+FNM L+ V+ +G VG +L+ L L
Sbjct: 42 GEYWRMFTSGFLHADWQHLIFNMLTLYFFADVVLFAVGKVG----------FLLIYLVAL 91
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
+ ++ L R + Y TAVG S V G + + PS+ + +F F+ +P
Sbjct: 92 YLGSLFSLYFHRKETHY----TAVGASGAVMGILYAAIMFAPSNYIYVF-FIPMPAYVFA 146
Query: 167 FESLIFTSI-IVPQASFLG---HLSGIIVGYAIA 196
L ++ + + +G H+ G + GY IA
Sbjct: 147 IGYLFYSVYGMKSRRDNIGHAAHIGGAVAGYIIA 180
>gi|260222883|emb|CBA32895.1| hypothetical protein Csp_B16320 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 364
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 11 EKPATSCIIGICSVIWFYIQKKNIGYSHV--------GLSYETAV-DGHHWRIITSAFSH 61
E P T+ ++ + +++ I G+ H G ++ A DG WR++++ F H
Sbjct: 23 EAPVTAGLMVLNVMVFLAIALAGGGWWHAVNGVQLDWGANFAPATQDGQWWRLLSAMFIH 82
Query: 62 ISVLHLVFNMSALWSLG 78
V HL NM ALW +G
Sbjct: 83 FGVWHLAVNMWALWDIG 99
>gi|312866894|ref|ZP_07727107.1| peptidase, S54 family [Streptococcus parasanguinis F0405]
gi|311097677|gb|EFQ55908.1| peptidase, S54 family [Streptococcus parasanguinis F0405]
Length = 225
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 23/149 (15%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
WRI+T+ F HI + H V NM L+ LG +L + G+ + L L +LSG++
Sbjct: 59 WRIVTATFVHIGLEHFVLNMITLYYLG---RLAEDLFGSKAF----LALYLLSGMMG--- 108
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
++ + F + V A G S +FG + + + LS + SLI
Sbjct: 109 -NVFVAIFTPD----VIAAGASTALFGLFGTIGALRFIVQSPYIRHLS-----QSYTSLI 158
Query: 172 FTSII---VPQASFLGHLSGIIVGYAIAW 197
++I +P+ S GH+ G++ G +A+
Sbjct: 159 LVNLIFSFMPRISMAGHIGGLVAGVMLAY 187
>gi|116621336|ref|YP_823492.1| rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
gi|116224498|gb|ABJ83207.1| Rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
Length = 246
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 20/149 (13%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
W+++T F H + HL+FNM ALW G + GT +L+Y + + +G+ + +
Sbjct: 63 WQLVTYLFLHGGITHLLFNMLALWMFGTPL---ESDWGTRQFLKYYFICGIGAGVCDVAM 119
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
++ + +G S ++G + V P + L GFL PI A + +I
Sbjct: 120 NAMMGNWV-------TSTIGASGAIYGLLLAYGVCYPDQTV-LMGFL-FPIK-AKYMVMI 169
Query: 172 FTSI-------IVPQASFLGHLSGIIVGY 193
+ +I + S + HL G++VG+
Sbjct: 170 YAAIELYLSIGVNNGISNIAHLGGMVVGF 198
>gi|311739300|ref|ZP_07713136.1| rhomboid family protein [Corynebacterium pseudogenitalium ATCC
33035]
gi|311305598|gb|EFQ81665.1| rhomboid family protein [Corynebacterium pseudogenitalium ATCC
33035]
Length = 217
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 40/198 (20%)
Query: 9 IMEKPATSCIIGICSVIWF--YIQKKNIGYSHVGLSYET--AVDGHHW---------RII 55
+ PAT+ I +C + W +Q + +G + YE+ AVD W +
Sbjct: 8 VRTTPATALIAAVCIIAWLITAVQARTLGATF----YESDLAVDWGLWGPDYPFRPQAAL 63
Query: 56 TSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHL 114
+S F H+ HL NM L +G VE+ LGTA YL L+ + + ++L
Sbjct: 64 SSEFMHLDAGHLAVNMVMLLLIGREVER----ALGTALYLAAYLISCLGASAMIL----- 114
Query: 115 LIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTS 174
F E VG S +F M +L LDL ++L ++ + +
Sbjct: 115 ---TFDFE----TPTVGASGALFALMAMLVGAYRQRGLDLRAPIALVLANVAY------T 161
Query: 175 IIVPQASFLGHLSGIIVG 192
+ S GHL G+ G
Sbjct: 162 FLADGVSLWGHLGGLCTG 179
>gi|118619868|ref|YP_908200.1| serine protease [Mycobacterium ulcerans Agy99]
gi|118571978|gb|ABL06729.1| rhomboid family serine protease [Mycobacterium ulcerans Agy99]
Length = 254
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 38 HVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG 78
H+ L DG +R++TSAF H LHLVFNM AL+ +G
Sbjct: 63 HLALWPPAVADGQLYRLVTSAFMHYGRLHLVFNMWALYVVG 103
>gi|238487390|ref|XP_002374933.1| rhomboid family protein, putative [Aspergillus flavus NRRL3357]
gi|317143610|ref|XP_001819579.2| rhomboid protein 2 [Aspergillus oryzae RIB40]
gi|220699812|gb|EED56151.1| rhomboid family protein, putative [Aspergillus flavus NRRL3357]
Length = 270
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 74/178 (41%), Gaps = 19/178 (10%)
Query: 23 SVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ 82
+W +Q + +G G +R+ T F H H N+ AL L VE+
Sbjct: 44 QTVWSVVQWGALAPDEIGF-------GSMYRLNTYPFIHNGFFHAFLNLVALTPL--VER 94
Query: 83 L-GDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMT 141
+ G TA L + +GL +LL+++F L R +G S VF +
Sbjct: 95 FEAEHGTLTAVALFLGPLSTFPAGL------YLLVEKFLLH--RNTAVLGASVWVFLLLG 146
Query: 142 ILSVKQ-PSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
++K S G +P +P + I SI++ SFLGHL I++GY G
Sbjct: 147 TEAIKTFKSHPYFSLGNYKIPTWTSPLFACIVVSILMSNTSFLGHLCAILIGYLFGLG 204
>gi|406861146|gb|EKD14201.1| rhomboid protein 2 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 266
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 126 RVTAVGYSCVVFGWMTILSVKQ-PSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLG 184
T +G S VF + + +VK S+ + G +P P ++F S+++P SFLG
Sbjct: 127 NTTILGASIWVFTLIAMEAVKTYKSNPYFMLGTTQIPTWITPIVMVLFVSVLIPNTSFLG 186
Query: 185 HLSGIIVGYAIAWG 198
HL G+ GY A G
Sbjct: 187 HLCGLAFGYGWALG 200
>gi|260774822|ref|ZP_05883724.1| protein GlpG [Vibrio coralliilyticus ATCC BAA-450]
gi|260609247|gb|EEX35402.1| protein GlpG [Vibrio coralliilyticus ATCC BAA-450]
Length = 276
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 86/192 (44%), Gaps = 34/192 (17%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T ++ +C VI F +Q+ G + + A+ G W R ++ A H SV+H+ F
Sbjct: 98 PVTLAVMLVCIVI-FALQQFGAGQAVFSALHFPALAGQEWQLWRWVSHAVLHFSVVHIAF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
N+ W LG GD+ LG LQ +V LSG G Y + + F +
Sbjct: 157 NLLWWWQLG-----GDIEQRLGAKKLLQLFVVSAALSG---AGQYWV-----EGANFGGL 203
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDL------FGFLSLPISF-APFESLIFTSIIVPQA 180
+ V Y+ V + WM L K P L++ F + L + F PF ++ T A
Sbjct: 204 SGVVYALVGYLWM--LGYKAPQLGLNMPKPIIGFMLVWLVLGFVQPFMAIANT------A 255
Query: 181 SFLGHLSGIIVG 192
+G +SG++ G
Sbjct: 256 HLVGLISGVVFG 267
>gi|187735290|ref|YP_001877402.1| rhomboid family protein [Akkermansia muciniphila ATCC BAA-835]
gi|187425342|gb|ACD04621.1| Rhomboid family protein [Akkermansia muciniphila ATCC BAA-835]
Length = 291
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 42 SYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVL 100
Y +G WR++T F H ++ H++FNM ALW G VVE+ YYL +
Sbjct: 67 EYTCFHEGELWRLLTYQFLHANLGHIMFNMIALWFFGPVVEERFGHWRFLLYYLFCGVAA 126
Query: 101 VVLSGLL-VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
+ S LL +G F E+ R + VG S ++G M +V P +++ L
Sbjct: 127 ALFSSLLGYMGF-------FDPEW-RFIPMVGASGSIYGIMAACAVLFPHARVQL 173
>gi|419802929|ref|ZP_14328109.1| peptidase, S54 family [Haemophilus parainfluenzae HK262]
gi|419845594|ref|ZP_14368861.1| peptidase, S54 family [Haemophilus parainfluenzae HK2019]
gi|385189169|gb|EIF36638.1| peptidase, S54 family [Haemophilus parainfluenzae HK262]
gi|386415462|gb|EIJ29994.1| peptidase, S54 family [Haemophilus parainfluenzae HK2019]
Length = 208
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 9 IMEKPATSCIIGICSVIWFYIQKKNIGYSH--VGLSYETAV---DGHHWRIITSAFSHIS 63
+ +K T + +C++I+ +NIG+ + L + A D WR T A H+S
Sbjct: 22 LRKKKITFILTALCALIYLL---QNIGFEEPIMDLFHYPAYSWEDQEIWRYFTHAIVHLS 78
Query: 64 VLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSG 105
V H++FN+S W G +E+ LG+ ++L + LV +SG
Sbjct: 79 VPHILFNLSWFWLFGGAIER----RLGSLHFLLFVLVSAAVSG 117
>gi|255037309|ref|YP_003087930.1| rhomboid family protein [Dyadobacter fermentans DSM 18053]
gi|254950065|gb|ACT94765.1| Rhomboid family protein [Dyadobacter fermentans DSM 18053]
Length = 206
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 43 YETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLV 101
Y ++R ITS F H HL+FNM +LW +G +E+L + G++ Y + +
Sbjct: 33 YRVTQRNEYYRFITSGFVHADFGHLIFNMLSLWFVGESIERLFAMLFGSSGTFYYLFLYL 92
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
V G++V I L R Y + G S V+F + P ++ L+ F+ +P
Sbjct: 93 V--GIVVSDIPTFLKHRKNSRYNSLGASGGVSAVLFAAILF----APLMQICLYFFICMP 146
>gi|445383054|ref|ZP_21427373.1| hypothetical protein IQ5_08616 [Streptococcus thermophilus MTCC
5460]
gi|445395945|ref|ZP_21429103.1| hypothetical protein IQ7_08672 [Streptococcus thermophilus MTCC
5461]
gi|444748296|gb|ELW73272.1| hypothetical protein IQ7_08672 [Streptococcus thermophilus MTCC
5461]
gi|444748403|gb|ELW73372.1| hypothetical protein IQ5_08616 [Streptococcus thermophilus MTCC
5460]
Length = 224
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 64/142 (45%), Gaps = 18/142 (12%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR+IT F HI V H +FNM L+ +G + EQ+ GT +L L +LSG V+G
Sbjct: 59 WRLITPIFVHIGVEHFLFNMLTLYFMGRMAEQI----FGTLRFLG----LYLLSG--VMG 108
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESL 170
F L + V A G S +FG + + S L LS +L
Sbjct: 109 ------NAFTLLFTPNVIAAGASTSLFGLFAAIVILGYYSHSPLLNQLSRNYLALIVINL 162
Query: 171 IFTSIIVPQASFLGHLSGIIVG 192
IF ++ P GHL G++ G
Sbjct: 163 IF-NLFTPSVGITGHLGGLVGG 183
>gi|386821651|ref|ZP_10108867.1| putative membrane protein [Joostella marina DSM 19592]
gi|386426757|gb|EIJ40587.1| putative membrane protein [Joostella marina DSM 19592]
Length = 215
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
G R ITS F H+ + HL+FNM L+ VV+ LGDV Y++ ++
Sbjct: 41 GEQIRTITSGFLHVDISHLLFNMLTLYFFAPIVVQYLGDVKFLIIYFISLLAGSLLSL-- 98
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPI 162
+H K +Y +AVG S V G + + QP +L F F+ +PI
Sbjct: 99 ----SFH------KNDY--HYSAVGASGAVTGILYAAILLQPEMRLAFF-FIPIPI 141
>gi|296417707|ref|XP_002838494.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634433|emb|CAZ82685.1| unnamed protein product [Tuber melanosporum]
Length = 179
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 14/100 (14%)
Query: 98 LVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVK----QPSSKLD 153
+ LV G L +GI LL+ + + G S +VF M +VK +P+ +
Sbjct: 4 VALVTFPGGLYVGIEILLLGAYD-------SVAGASALVFTLMANEAVKTFLEKPTYSIA 56
Query: 154 LFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGY 193
+G +P AP L+ SI+VP AS LGH G+I+GY
Sbjct: 57 GYG---IPSWMAPIFWLVVVSILVPGASILGHFCGLIIGY 93
>gi|407923843|gb|EKG16906.1| Peptidase S54 rhomboid [Macrophomina phaseolina MS6]
Length = 267
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 21/159 (13%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
G W IT+AFSH + H VFNM AL + GD + + L + G +
Sbjct: 112 GRWWTCITAAFSHKDLPHFVFNMLAL------KSFGDALIAYVPRINPASFLTLYLGAGL 165
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE 168
G Q+ ++ A+G S V G +++ P++K F +PI +
Sbjct: 166 AGSLGFYYQKKAQGNRQQSAAIGASGAVSGLAATMALIAPNAKWQ---FAFIPIGIPAWA 222
Query: 169 SLIFTSIIVPQASFL----------GHLSGIIVGYAIAW 197
+F++ I A +L GH+ G G A W
Sbjct: 223 --MFSAYIAYDAFYLNDPNSRVGHSGHIGGAAFGAAYYW 259
>gi|375098380|ref|ZP_09744643.1| putative membrane protein [Saccharomonospora cyanea NA-134]
gi|374659112|gb|EHR58990.1| putative membrane protein [Saccharomonospora cyanea NA-134]
Length = 333
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 58/150 (38%), Gaps = 38/150 (25%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
WR++TS F H +LHL NM ALW LG L+ L V
Sbjct: 158 WRLLTSGFLHYGLLHLAMNMLALWVLG-------------RDLEMLLGRV---------- 194
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL---SLPISFAPFE 168
RF YF + A G + VFG + + L G + L + P
Sbjct: 195 ------RFLAVYFLSMFAGGAAVFVFGDPATGTAGASGAIYGLMGAILVAVLRLRLNPTT 248
Query: 169 SL------IFTSIIVPQASFLGHLSGIIVG 192
++ + S+ +P S LGHL G++ G
Sbjct: 249 AIGIIVLNVIISVSIPNISLLGHLGGLVAG 278
>gi|300774459|ref|ZP_07084322.1| rhomboid family protein [Chryseobacterium gleum ATCC 35910]
gi|300506274|gb|EFK37409.1| rhomboid family protein [Chryseobacterium gleum ATCC 35910]
Length = 242
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 50 HHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQ-LGD 85
H W+IIT F H S++H++FNM L+S G ++EQ LGD
Sbjct: 45 HSWQIITHMFMHGSIMHILFNMMTLFSFGPILEQTLGD 82
>gi|313886257|ref|ZP_07819986.1| peptidase, S54 family [Porphyromonas asaccharolytica PR426713P-I]
gi|332299847|ref|YP_004441768.1| rhomboid family protein [Porphyromonas asaccharolytica DSM 20707]
gi|312924328|gb|EFR35108.1| peptidase, S54 family [Porphyromonas asaccharolytica PR426713P-I]
gi|332176910|gb|AEE12600.1| Rhomboid family protein [Porphyromonas asaccharolytica DSM 20707]
Length = 239
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 16/139 (11%)
Query: 39 VGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYT 97
+GL Y TA H W+ +T F H S HL FNM AL+ GV +E+ +YL
Sbjct: 44 LGLHYVTAQGFHIWQPVTYMFLHGSFTHLFFNMFALFMFGVTIERTWGAQRFLLFYLVCG 103
Query: 98 LVLVVLSGLLVLGI--------YHLLI----QRFKLEYF-RRVTAVGYSCVVFGWMTILS 144
L LS LV G+ Y ++ R E+F ++ +G S VFG +
Sbjct: 104 LT-AALSQELVWGLTTVREVAGYEVIAFPDGTRMATEFFINQLLTIGASGAVFGLLLAFG 162
Query: 145 VKQPSSKLDLFGFLSLPIS 163
P++ + LF F+ +PI
Sbjct: 163 WLYPNAAIYLF-FIPIPIR 180
>gi|189091878|ref|XP_001929772.1| hypothetical protein [Podospora anserina S mat+]
gi|188219292|emb|CAP49272.1| unnamed protein product [Podospora anserina S mat+]
Length = 268
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 10/151 (6%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
+R+ T F H+++ H V N+ AL L +E+ + GT L + G L
Sbjct: 62 YRMNTFPFIHLNIFHAVMNILALTPL--MERF-EAEYGTLN------CLALFFGPLTTIP 112
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLD-LFGFLSLPISFAPFESL 170
L I K + V +G S VF + + +VK + + G S+P P L
Sbjct: 113 AFLYIGLEKFVFGNNVAVMGASMWVFLLLGVEAVKTYKVNPNFVIGTYSIPTWTTPIGVL 172
Query: 171 IFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
+++VP +SF GH +G+++GY G +
Sbjct: 173 FAMAVLVPSSSFWGHAAGLVIGYGAGLGYVK 203
>gi|325185827|emb|CCA20333.1| serine protease family S54 putative [Albugo laibachii Nc14]
Length = 285
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 34/216 (15%)
Query: 8 EIMEKP-------ATSCII-GICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWR-IITSA 58
EI +KP +C++ G+ V +++ + H SY+ G + ++TSA
Sbjct: 69 EIRKKPRGIVAILGVNCVVFGLWRVSFYHRGMHRWMWRHFACSYDAVFMGKRFHTLVTSA 128
Query: 59 FSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYL--------------QYTLVLVVLS 104
FS ++ HL NM LW G Q+ D + L + + V +
Sbjct: 129 FSQNTLPHLAINMFMLWEFG--SQIVDARVRVRNALMEAIRKRFRRKKLTENEFLAVYMG 186
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLS----- 159
+V ++ R++ R V +G S V T+ V P +L L+G
Sbjct: 187 ATIVSSTTSVVASRYR--GMRSVYTLGASGCVMAVFTLYCVMYPEERLLLYGLFDCSALD 244
Query: 160 -LPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYA 194
L ++ A + VP F+GHL+G GYA
Sbjct: 245 MLRLTTAGNVIGVAYQRRVP-IDFVGHLAGQATGYA 279
>gi|261250000|ref|ZP_05942577.1| protein GlpG [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|417955538|ref|ZP_12598553.1| Integral membrane protein (Rhomboid family) [Vibrio orientalis CIP
102891 = ATCC 33934]
gi|260939504|gb|EEX95489.1| protein GlpG [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342812894|gb|EGU47880.1| Integral membrane protein (Rhomboid family) [Vibrio orientalis CIP
102891 = ATCC 33934]
Length = 278
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 34/192 (17%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T ++ +CSVI F +Q+ + + + A+ G W R A H SV+H+ F
Sbjct: 98 PMTLLVMLVCSVI-FVLQQFGMSNAIFQALHFPALAGQEWQLWRWFGHALLHFSVMHIAF 156
Query: 70 NMSALWSLGVVEQLGDV--GLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
N+ W LG GD+ LG+ +Q LV LSG G Y + + F +
Sbjct: 157 NLLWWWQLG-----GDIEQKLGSTKLIQLFLVSAALSG---AGQYWV-----EGANFGGL 203
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDL------FGFLSLPISF-APFESLIFTSIIVPQA 180
+ V Y+ V + WM L K P L + F + L + F PF ++ T+ +V
Sbjct: 204 SGVVYALVGYLWM--LGYKAPQVGLSMPKPVIGFMLVWLVLGFMQPFMAIANTAHLV--- 258
Query: 181 SFLGHLSGIIVG 192
G LSG++ G
Sbjct: 259 ---GLLSGVVFG 267
>gi|348175297|ref|ZP_08882191.1| rhomboid-like protein [Saccharopolyspora spinosa NRRL 18395]
Length = 245
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ--LGDVGLGTAYYLQ 95
G WR+I++ F HI +LHL NM ALW +G + LG + G Y L
Sbjct: 62 GQWWRLISAGFLHIGLLHLAMNMIALWVIGRDLELLLGRLRFGAVYLLS 110
>gi|387760478|ref|YP_006067455.1| peptidase, S54 family [Streptococcus salivarius 57.I]
gi|339291245|gb|AEJ52592.1| peptidase, S54 family [Streptococcus salivarius 57.I]
Length = 224
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 26/146 (17%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
WR++T F HI V H +FNM AL+ +G ++ + GT +L L +L+G V+G
Sbjct: 59 WRLVTPIFVHIGVEHFLFNMLALYFMG---KMAEHIFGTLRFLG----LYLLAG--VMG- 108
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMT---ILSVKQPSSKLDLFG--FLSLPISFAP 166
F L + V A G S +FG IL S L+ G +L+L +
Sbjct: 109 -----NAFTLLFTPNVIAAGASTSLFGLFAAVVILGYYSHSPLLNQLGRNYLALIVI--- 160
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVG 192
+LIF ++ P GHL G++ G
Sbjct: 161 --NLIF-NLFTPSVGITGHLGGLVGG 183
>gi|386714819|ref|YP_006181142.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
gi|384074375|emb|CCG45868.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
Length = 510
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 23/184 (12%)
Query: 40 GLSYETAV-DGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYT 97
G Y A+ +G WRI +S F HI +LHL+ NM AL+ +G+ VE++ GT +
Sbjct: 215 GAKYNPAIMEGEWWRIGSSMFLHIGLLHLLMNMLALYYIGIAVERI----YGTWRF---- 266
Query: 98 LVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGF 157
V+ +L+G+ G+ ++ A G S +FG L + F
Sbjct: 267 SVIYLLAGIFG-GVASFMLNPH--------VAAGASGAIFGLFGALLYFGVRHRQLFFKT 317
Query: 158 LSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGL-IHGMNNYW--ALSMLGW 214
+ + F ++ F I+VPQ H+ G+I G+ + G + N+ W +++ G+
Sbjct: 318 MGWNLIFVIALNIAF-GIMVPQVDNGAHMGGLIGGFIASAGFNLPKRNDKWLQGIALTGY 376
Query: 215 IVLV 218
IV++
Sbjct: 377 IVIL 380
>gi|365102667|ref|ZP_09332968.1| rhomboid protease glpG [Citrobacter freundii 4_7_47CFAA]
gi|363646395|gb|EHL85643.1| rhomboid protease glpG [Citrobacter freundii 4_7_47CFAA]
Length = 276
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P + E+ P T ++ C ++ +I +G V L ++ ++ WR T
Sbjct: 84 PFLATLRERAGPVTWLVMAACVLV--FIAMNVLGDQAVMLWLAWPFDPSLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
AF H S++H++FN+ W L G VE+ LG+ + T++ +LSG +
Sbjct: 142 AFMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITVISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|257388529|ref|YP_003178302.1| rhomboid family protein [Halomicrobium mukohataei DSM 12286]
gi|257170836|gb|ACV48595.1| Rhomboid family protein [Halomicrobium mukohataei DSM 12286]
Length = 560
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 26/185 (14%)
Query: 54 IITSAFSHISVLHLVFNMSALWSLGVV---------EQLGDVGLGTAYYLQYTLVLVVLS 104
++T+AF+H S+ H+ N+ A + G V + G G+A + +L+V +
Sbjct: 97 MVTAAFTHSSLGHVTGNLVATAAFGSVAEYAWGHYPRKRGAHSFGSALTNPFVRILIVPA 156
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKL------DLFGFL 158
G LV+G++ L F VG+S VVF V++P + L + GFL
Sbjct: 157 GALVVGLFTSL--------FALGPVVGFSGVVFAIAGFALVQRPLTALLALLADQVLGFL 208
Query: 159 SLPISFAPFESLIFTSIIVP---QASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWI 215
+ + ++ +I P + GH G+ G + +GL++ + + + L +
Sbjct: 209 VVAVQTPRVVAVPRPRVITPWWASIAIQGHAIGLFAGILLGFGLLYYRDRWPDPTRLWFG 268
Query: 216 VLVFV 220
+LVF
Sbjct: 269 LLVFA 273
>gi|386725483|ref|YP_006191809.1| hypothetical protein B2K_25730 [Paenibacillus mucilaginosus K02]
gi|384092608|gb|AFH64044.1| hypothetical protein B2K_25730 [Paenibacillus mucilaginosus K02]
Length = 383
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYS-----HVGLSYETAVD-GHHWRIITSAFSHISVLH 66
P T + GI +W + + G Y +D G +WR IT F HI LH
Sbjct: 197 PVTFALTGINVAVWLLMTAYGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGGLH 256
Query: 67 LVFNMSALWSLG 78
L FN++AL SLG
Sbjct: 257 LWFNLTALLSLG 268
>gi|255714867|ref|XP_002553715.1| KLTH0E05390p [Lachancea thermotolerans]
gi|238935097|emb|CAR23278.1| KLTH0E05390p [Lachancea thermotolerans CBS 6340]
Length = 334
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 51 HWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W +I SAFSH V HL NM ALWS G LG A ++ L + LL L
Sbjct: 172 KWSLIGSAFSHQEVWHLGMNMLALWSFGTTVA---TMLGPANFMSLYLNSALAGSLLSL- 227
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGF 157
++ I R + ++G S +FG S P +K+ LF F
Sbjct: 228 -WYPRIARISMM----APSLGASGALFGVFGCFSYLIPHAKIMLFVF 269
>gi|395228798|ref|ZP_10407116.1| rhomboid protease glpG [Citrobacter sp. A1]
gi|421845042|ref|ZP_16278198.1| intramembrane serine protease GlpG [Citrobacter freundii ATCC 8090
= MTCC 1658]
gi|424732524|ref|ZP_18161102.1| glycerol-3-phosphate regulon repressor [Citrobacter sp. L17]
gi|394717504|gb|EJF23188.1| rhomboid protease glpG [Citrobacter sp. A1]
gi|411773905|gb|EKS57433.1| intramembrane serine protease GlpG [Citrobacter freundii ATCC 8090
= MTCC 1658]
gi|422893183|gb|EKU33032.1| glycerol-3-phosphate regulon repressor [Citrobacter sp. L17]
gi|455640958|gb|EMF20161.1| intramembrane serine protease GlpG [Citrobacter freundii GTC 09479]
Length = 276
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P + E+ P T ++ C ++ +I +G V L ++ ++ WR T
Sbjct: 84 PFLATLRERAGPVTWLVMAACVLV--FIAMNVLGDQAVMLWLAWPFDPSLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
AF H S++H++FN+ W L G VE+ LG+ + T++ +LSG +
Sbjct: 142 AFMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITVISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|420367866|ref|ZP_14868642.1| rhomboid protease glpG [Shigella flexneri 1235-66]
gi|391322821|gb|EIQ79493.1| rhomboid protease glpG [Shigella flexneri 1235-66]
Length = 276
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P + E+ P T ++ C ++ +I +G V L ++ + WR T
Sbjct: 84 PFLATLRERAGPVTWAVMAACVLV--FIAMNVMGDQAVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
AF H S++H++FN+ W L G VE+ LG+ + T++ +LSG +
Sbjct: 142 AFMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITVISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|237728739|ref|ZP_04559220.1| peptidase [Citrobacter sp. 30_2]
gi|226909361|gb|EEH95279.1| peptidase [Citrobacter sp. 30_2]
Length = 277
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P + E+ P T ++ C ++ +I +G V L ++ ++ WR T
Sbjct: 84 PFLATLRERAGPVTWLVMAACVLV--FIAMNVLGDQAVMLWLAWPFDPSLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
AF H S++H++FN+ W L G VE+ LG+ + T++ +LSG +
Sbjct: 142 AFMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITVISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|302870601|ref|YP_003839238.1| rhomboid family protein [Micromonospora aurantiaca ATCC 27029]
gi|302573460|gb|ADL49662.1| Rhomboid family protein [Micromonospora aurantiaca ATCC 27029]
Length = 298
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 71/173 (41%), Gaps = 20/173 (11%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
DG +R++T+ F H VLHL+ NM ALW LG L+ L + L
Sbjct: 131 DGEWYRLVTAMFLHYGVLHLLLNMWALWVLG-------------RTLEAVLGPLRFLALY 177
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
+L + + R TA G S VFG + V D + + +
Sbjct: 178 LLAGLGGNVAAYVFTEPNRFTA-GASTAVFGLFAAVFVIMRRLGRDTSAIVPILVI---- 232
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFV 220
+LIFT VP S GHL G++ G +A L + + L + V+V V
Sbjct: 233 -NLIFT-FTVPSISVAGHLGGLVAGALVALVLAYAPRSRRTLFQVAGCVIVLV 283
>gi|255533925|ref|YP_003094297.1| rhomboid family protein [Pedobacter heparinus DSM 2366]
gi|255346909|gb|ACU06235.1| Rhomboid family protein [Pedobacter heparinus DSM 2366]
Length = 513
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 42 SYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLV 101
S + + G WR+++S F H S+LHL FNM AL +G+ + + LG A TL++
Sbjct: 210 SRDLTLSGQWWRLLSSQFYHFSLLHLFFNMYALIYIGL---MTENKLGWA----KTLIVY 262
Query: 102 VLSG 105
+LSG
Sbjct: 263 ILSG 266
>gi|392981076|ref|YP_006479664.1| intramembrane serine protease GlpG [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392327009|gb|AFM61962.1| intramembrane serine protease GlpG [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 276
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 21/153 (13%)
Query: 4 PLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLS----YETAVDGHHWRIITSAF 59
P I E+ ++ + + I +I +G V ++ Y+ ++D WR T A
Sbjct: 84 PFLATIRERAGPFTLLLMAACIIVFIIMNVVGDQSVMIALAWPYDPSLDFDVWRYFTHAL 143
Query: 60 SHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQ 117
H SV+H++FN+ W LG V ++LG L +V+ ++S LL + H
Sbjct: 144 MHFSVMHILFNLLWWWYLGGAVEKRLGSGKL---------IVITIISALLSGYVQH---- 190
Query: 118 RFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
+F +F ++ V Y+ + + W+ + P S
Sbjct: 191 KFSGPWFGGLSGVVYALMGYVWLR--GERDPES 221
>gi|313675606|ref|YP_004053602.1| rhomboid family protein [Marivirga tractuosa DSM 4126]
gi|312942304|gb|ADR21494.1| Rhomboid family protein [Marivirga tractuosa DSM 4126]
Length = 205
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 24/167 (14%)
Query: 43 YETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVE----QLGDVGLGTAYYLQYT 97
Y+ ++R+ITS F H +HL+FNM L+ G VE QL + G +
Sbjct: 33 YQVVYRKQYYRMITSGFLHADYVHLIFNMLTLYFFGDAVEYYFNQLTNYG-------TFL 85
Query: 98 LVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGF 157
V + LS ++V I L+ + Y + S VVF + P + L L+G
Sbjct: 86 YVGLYLSAIVVSDIPSLIKHKENPNYNALGASGAVSAVVFSSILF----NPMTDLCLYGL 141
Query: 158 LSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGY-AIAWGLIHGM 203
L LP IF +I V + + G G V + A +G ++G+
Sbjct: 142 LCLP-------GFIFGAIYVIYSYYKGKQQGDNVNHDAHLFGALYGV 181
>gi|255325720|ref|ZP_05366816.1| rhomboid family protein [Corynebacterium tuberculostearicum SK141]
gi|255297214|gb|EET76535.1| rhomboid family protein [Corynebacterium tuberculostearicum SK141]
Length = 217
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 40/198 (20%)
Query: 9 IMEKPATSCIIGICSVIWF--YIQKKNIGYSHVGLSYET--AVDGHHW---------RII 55
I PAT+ I +C + W +Q + +G + YE+ AVD W +
Sbjct: 8 IRATPATALIAAVCIIAWLITAVQARTLGATF----YESDLAVDWGLWGPQYPIAPQTAL 63
Query: 56 TSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHL 114
+SAF H+ HL NM L +G VE+ LGT YL L+ + + ++L
Sbjct: 64 SSAFMHLDAGHLAVNMIMLVLIGREVER----ALGTGLYLAAYLISCLGASAMIL----- 114
Query: 115 LIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTS 174
F E VG S +F M +L LDL ++L ++ ++++T
Sbjct: 115 ---TFDFE----TPTVGASGALFALMAMLVGAYRQRGLDLRAPIALVLA-----NVVYT- 161
Query: 175 IIVPQASFLGHLSGIIVG 192
+ S GHL G+ G
Sbjct: 162 FLADGVSLWGHLGGLCTG 179
>gi|386384848|ref|ZP_10070191.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
gi|385667692|gb|EIF91092.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
Length = 299
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
DG +R++TS F H + H+ FNM ALW LG ++ + LG + + LVL +LSGL
Sbjct: 131 ADGQWYRLLTSVFLHQDLSHIAFNMLALWFLG---RMVEPALGRSRF----LVLYLLSGL 183
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
+LL + + +G S +FG + +V LDL
Sbjct: 184 GGDVFVYLLSEPNQ-------ATIGASGAIFGLVGAFAVLLRRMNLDL 224
>gi|218248147|ref|YP_002373518.1| rhomboid family protein [Cyanothece sp. PCC 8801]
gi|218168625|gb|ACK67362.1| Rhomboid family protein [Cyanothece sp. PCC 8801]
Length = 198
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 33 NIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAY 92
N Y+ L + V G WR++T+ F H S LHL NM L+ LG +L ++ G
Sbjct: 33 NTIYTLGALVPQVVVQGEVWRLLTANFLHYSWLHLFVNMIGLYFLG---RLVELKFGVFR 89
Query: 93 YLQYTLVLVVLSGLLVLGIY-HLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVK---QP 148
Y L++ +SGL + + + I +Y + A G + G +T L ++ Q
Sbjct: 90 Y----LIIYFVSGLGAMAAFTYFAITTNDTDYI-LLGASGAIMGLVGSITALFLQNFWQE 144
Query: 149 SSKLDL----FGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
S++ F LS+ + F +P+ SFL HL G+I+G+ +
Sbjct: 145 RSRIATRRLQFILLSIGLQFV-------FDFFIPEVSFLSHLFGLIIGFFVG 189
>gi|407980349|ref|ZP_11161140.1| peptidase [Bacillus sp. HYC-10]
gi|407412941|gb|EKF34690.1| peptidase [Bacillus sp. HYC-10]
Length = 512
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVV 80
++G WR++T F HI + HL+FN ALWS+G
Sbjct: 223 LEGEWWRLVTPMFLHIGLTHLLFNTFALWSVGAA 256
>gi|90021380|ref|YP_527207.1| GntR family transcriptional regulator [Saccharophagus degradans
2-40]
gi|89950980|gb|ABD80995.1| transcriptional regulator, GntR family [Saccharophagus degradans
2-40]
Length = 340
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 24 VIWFYIQK----KNIGYSHVGLSYETAV-DGHHWRIITSAFSHISVLHLVFNMSALWSLG 78
V FY+Q+ ++ +S L E AV G WRI+T AF H +LH+VFN LW LG
Sbjct: 158 VAGFYVQELFLNTSLFHSLTFLPLEKAVASGQPWRILTPAFLHFGLLHIVFNALWLWILG 217
>gi|453381363|dbj|GAC84026.1| rhomboid family protein [Gordonia paraffinivorans NBRC 108238]
Length = 294
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 30/185 (16%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQ-YTLVLVVLSGLL 107
G +WR++T+ F H SV+H+ NM +L+ LG +L LG YL Y + L+ S +
Sbjct: 113 GEYWRLLTAGFLHFSVMHIAVNMLSLYILGRDLEL---ALGMFRYLAIYLIALLGGSAAV 169
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
+L E R VTA G S ++G M + V +++ LS+ I+F
Sbjct: 170 ML-----------FEADRAVTA-GASGAIYGLMGAMLVIILKARVSPVPVLSI-IAFN-- 214
Query: 168 ESLIFTSIIVPQASFLGH--------LSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVF 219
+ S +P S LGH + V Y L G A S +GW+ L
Sbjct: 215 ---VVLSFSLPGISVLGHLGGLAFGAAATAAVVYLPGLVLPPGGRTPEAASRVGWVALAA 271
Query: 220 VYSLK 224
++ L
Sbjct: 272 LFVLA 276
>gi|421079889|ref|ZP_15540825.1| Rhomboid protease glpG-like protein [Pectobacterium wasabiae CFBP
3304]
gi|401705376|gb|EJS95563.1| Rhomboid protease glpG-like protein [Pectobacterium wasabiae CFBP
3304]
Length = 277
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 29/200 (14%)
Query: 6 FYEIMEKPATSCIIGICSV-IWFYIQKKNIGYSHVGLSYETAVDGHH---WRIITSAFSH 61
F + +++ A + + V I +I + GY V + +G WR + A H
Sbjct: 87 FLQTLKQKAGPLTLSVMVVTIAVFILMQISGYESVMVWLAFPAEGQQAQLWRWFSHALLH 146
Query: 62 ISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
S+LH++FN+ W L G VE++ LGT L TLV ++SG F
Sbjct: 147 FSLLHILFNLMWWWYLGGPVEKV----LGTGKLLVITLVSALVSGWAQ--------SWFS 194
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTS----II 176
YF ++ V Y+ + + W+ ++P G+L++P S F L + I+
Sbjct: 195 GTYFGGLSGVVYALMGYVWLR--GEREPD------GYLAMPRSLMVFALLWLVAGYFDIL 246
Query: 177 VPQASFLGHLSGIIVGYAIA 196
+ H++G+IVG +A
Sbjct: 247 GMSIANAAHVAGLIVGLLMA 266
>gi|116628516|ref|YP_821135.1| membrane-associated serine protease [Streptococcus thermophilus
LMD-9]
gi|387910529|ref|YP_006340835.1| membrane-associated serine protease [Streptococcus thermophilus
MN-ZLW-002]
gi|116101793|gb|ABJ66939.1| Membrane-associated serine protease [Streptococcus thermophilus
LMD-9]
gi|387575464|gb|AFJ84170.1| membrane-associated serine protease [Streptococcus thermophilus
MN-ZLW-002]
Length = 224
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 28/147 (19%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR+IT F HI V H +FNM L+ +G + EQ+ GT +L L +L+G V+G
Sbjct: 59 WRLITPIFVHIGVEHFLFNMLTLYFMGRMAEQI----FGTLRFLG----LYLLAG--VMG 108
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMT---ILSVKQPSSKLDLFG--FLSLPISFA 165
F L + V A G S +FG + IL S L+ G +L+L +
Sbjct: 109 ------NAFTLFFTPNVIAAGASTSLFGLFSAIVILGYYSHSPLLNQLGRNYLALIVI-- 160
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192
+LIF ++ P GHL G++ G
Sbjct: 161 ---NLIF-NLFTPSVGITGHLGGLVGG 183
>gi|377562581|ref|ZP_09791962.1| hypothetical protein GOOTI_266_00160 [Gordonia otitidis NBRC
100426]
gi|377520256|dbj|GAB37127.1| hypothetical protein GOOTI_266_00160 [Gordonia otitidis NBRC
100426]
Length = 212
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 28/191 (14%)
Query: 36 YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQ 95
+ H L DG +WR++T+ F H +V H+ NM +L+ LG + +GLG Y +
Sbjct: 21 FQHGDLVRAYVADGEYWRLLTAGFLHFTVAHIALNMISLYILG-RDLEAALGLGR-YLMV 78
Query: 96 YTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLF 155
Y + L S ++L F+ R + G S ++G M + V +K+
Sbjct: 79 YFIALFGGSAAVML---------FEAANVR---SAGASGAIYGLMGAVLVVVLKAKVSPT 126
Query: 156 GFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH--------GMNNYW 207
G +++ + +L+F S+ +P S H+ G++ G A +I+ +
Sbjct: 127 GVITIIV-----INLVF-SVTMPGISLAAHVGGLVFGAAATAAIIYLPGVVLSRESSTQQ 180
Query: 208 ALSMLGWIVLV 218
S +GWI LV
Sbjct: 181 NASRVGWIALV 191
>gi|418027820|ref|ZP_12666426.1| Serine endopeptidase [Streptococcus thermophilus CNCM I-1630]
gi|354689564|gb|EHE89549.1| Serine endopeptidase [Streptococcus thermophilus CNCM I-1630]
Length = 179
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 28/147 (19%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR+IT F HI V H +FNM L+ +G + EQ+ GT +L L +L+G V+G
Sbjct: 14 WRLITPIFVHIGVEHFLFNMLTLYFMGRMAEQI----FGTLRFLG----LYLLAG--VMG 63
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGW---MTILSVKQPSSKLDLFG--FLSLPISFA 165
F L + V A G S +FG + IL S L+ G +L+L +
Sbjct: 64 ------NAFTLFFTPNVIAAGASTSLFGLFAAIVILGYYSHSPLLNQLGRNYLALIVI-- 115
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192
+LIF ++ P GHL G++ G
Sbjct: 116 ---NLIF-NLFTPSVGITGHLGGLVGG 138
>gi|419640559|ref|ZP_14172488.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni LMG
23357]
gi|380619289|gb|EIB38366.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni LMG
23357]
Length = 172
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 23/153 (15%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
+G +W++++S F H ++ HL+ NM L+ G + + Y V + G L
Sbjct: 33 NGAYWQLLSSMFLHGNLTHLILNMIVLFQFGRILE--------TYLGALRFVFIYFIGGL 84
Query: 108 VLGIYHLLIQRFKLEYF-RRVTAVGYS---CVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
+ + + F +YF + +G S CV+ G+ +L K + L + L +S
Sbjct: 85 LCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVLD-KNSTKGLIV---AILLMS 140
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
FAP ++ ++ GH+ G I GY +A
Sbjct: 141 FAPL-------LMGVNVAWYGHIFGFICGYILA 166
>gi|290958988|ref|YP_003490170.1| hypothetical protein SCAB_45641 [Streptomyces scabiei 87.22]
gi|260648514|emb|CBG71625.1| putative integral membrane protein [Streptomyces scabiei 87.22]
Length = 297
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 38 HVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYL 94
+G S + +G +R++TS F H SV H++FNM +LW +G + LG A YL
Sbjct: 120 ELGTSLQGVAEGQWYRLVTSMFLHGSVTHILFNMLSLWWIGGPL---EAALGRARYL 173
>gi|328949134|ref|YP_004366471.1| peptidase S54, rhomboid domain-containing protein [Treponema
succinifaciens DSM 2489]
gi|328449458|gb|AEB15174.1| Peptidase S54, rhomboid domain protein [Treponema succinifaciens
DSM 2489]
Length = 207
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 30/203 (14%)
Query: 8 EIMEKP-------ATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFS 60
I+ KP ATS II + +++F ++G+SY + ++W+ +T F
Sbjct: 2 NIIRKPFRYSFFNATSIIIALNLIVFFLTMIFPRLQVYLGMSYFGILLHYYWQPLTYLFV 61
Query: 61 HISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
H H++FNM AL+ G+ VE+ +G+ +L + + +L G++ +Y LL
Sbjct: 62 HSGWSHILFNMLALFFFGISVER----AVGSKEFLLFYFLCGILDGIISTVLYRLLGI-- 115
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQ 179
V VG S V+ + +V P + + ++G +P++ AP L+F ++
Sbjct: 116 ------TVLLVGASGAVYALLFAYAVIFPRNVIYIWGI--IPVA-APL--LVFVYALIEI 164
Query: 180 ASFLGHLSGI-----IVGYAIAW 197
S + SGI + G+A+AW
Sbjct: 165 TSQISGGSGIAHLAHLAGFAVAW 187
>gi|323340676|ref|ZP_08080928.1| rhomboid protease GluP [Lactobacillus ruminis ATCC 25644]
gi|335996819|ref|ZP_08562736.1| rhomboid family integral membrane protein [Lactobacillus ruminis
SPM0211]
gi|417974323|ref|ZP_12615144.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 25644]
gi|323091799|gb|EFZ34419.1| rhomboid protease GluP [Lactobacillus ruminis ATCC 25644]
gi|335351889|gb|EGM53380.1| rhomboid family integral membrane protein [Lactobacillus ruminis
SPM0211]
gi|346329320|gb|EGX97618.1| rhomboid family integral membrane protein [Lactobacillus ruminis
ATCC 25644]
Length = 219
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 7 YEIMEKPATSCIIGICSVIWFYIQ----KKNIG-YSHVGLSYETAV-DGHHWRIITSAFS 60
Y+ PAT +IGI I+ + +N G G ++ V +G +WR++T+ F
Sbjct: 3 YKFKNFPATCVLIGINVAIYLLMTFAGGSQNPGVLVRFGANFAPYVSNGEYWRLLTAMFL 62
Query: 61 HISVLHLVFNMSALWSLG 78
HI + HL NM L+ +G
Sbjct: 63 HIGLEHLALNMLTLYFIG 80
>gi|320162418|ref|YP_004175643.1| rhomboid family protein [Anaerolinea thermophila UNI-1]
gi|319996272|dbj|BAJ65043.1| rhomboid family protein [Anaerolinea thermophila UNI-1]
Length = 258
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGV 79
G WR+IT F H+S+ H+ FNM AL++ GV
Sbjct: 78 QGEFWRLITPMFLHVSLPHIAFNMYALYAFGV 109
>gi|118474503|ref|YP_892056.1| rhomboid family protein [Campylobacter fetus subsp. fetus 82-40]
gi|424820726|ref|ZP_18245764.1| rhomboid family protein [Campylobacter fetus subsp. venerealis
NCTC 10354]
gi|118413729|gb|ABK82149.1| rhomboid family protein [Campylobacter fetus subsp. fetus 82-40]
gi|342327505|gb|EGU23989.1| rhomboid family protein [Campylobacter fetus subsp. venerealis
NCTC 10354]
Length = 172
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 13 PATSCIIGICSVIWF--YIQKKNIGYS-HVGLSYETAVDGHHWRIITSAFSHISVLHLVF 69
AT +I I +V++F Y + +S GL+ E +G +W++IT+ F H S++H++
Sbjct: 2 TATPFLIAINAVVYFLEYFVYNSRSFSIFFGLN-ELFFEGAYWQLITTMFLHGSLMHILM 60
Query: 70 NMSALWSLGVVEQ--LGDV 86
NM+ L+ G++ + LG V
Sbjct: 61 NMAVLYQFGMLLERYLGSV 79
>gi|418018722|ref|ZP_12658277.1| hypothetical protein SSALIVM18_09407 [Streptococcus salivarius M18]
gi|345526164|gb|EGX29476.1| hypothetical protein SSALIVM18_09407 [Streptococcus salivarius M18]
Length = 224
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 26/146 (17%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
WR++T F HI + H +FNM AL+ +G ++ + GT +L L +L+G V+G
Sbjct: 59 WRLVTPIFVHIGIEHFLFNMLALYFMG---KMAEHIFGTLRFLG----LYLLAG--VMG- 108
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMT---ILSVKQPSSKLDLFG--FLSLPISFAP 166
F L + V A G S +FG IL S L+ G +L+L +
Sbjct: 109 -----NAFTLLFTPNVIAAGASTSLFGLFAAVVILGYYSHSPLLNQLGRNYLALIVI--- 160
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVG 192
+LIF ++ P GHL G++ G
Sbjct: 161 --NLIF-NLFTPSVGITGHLGGLVGG 183
>gi|293193637|ref|ZP_06609859.1| rhomboid family protein [Actinomyces odontolyticus F0309]
gi|292819869|gb|EFF78872.1| rhomboid family protein [Actinomyces odontolyticus F0309]
Length = 292
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 17/153 (11%)
Query: 50 HHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
H W ++T AF H ++H++FNM +L+ +G +E + LG +L TL LV G
Sbjct: 111 HPWTVLTGAFLHGGIMHILFNMLSLYWVGRAIEPV----LGRWRFL--TLYLVSALGGSA 164
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE 168
+ LIQ E F V+ VG S VFG + V Q D L+L
Sbjct: 165 FILVWCLIQ--PSEIF--VSTVGASGAVFGLFGAVFVLQRLGGSDTTAILTL------LG 214
Query: 169 SLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
+ +V S+ GH+ G I G W L+H
Sbjct: 215 INLVYGFMVSGISWQGHIGGAIAGVGATWVLVH 247
>gi|42522625|ref|NP_968005.1| integral membrane protein [Bdellovibrio bacteriovorus HD100]
gi|426403007|ref|YP_007021978.1| integral membrane protein [Bdellovibrio bacteriovorus str.
Tiberius]
gi|39575157|emb|CAE78998.1| integral membrane protein [Bdellovibrio bacteriovorus HD100]
gi|425859675|gb|AFY00711.1| integral membrane protein [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 244
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 28/201 (13%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSY-------ETAVDGHHWRIITSAFSH-ISV 64
P ++ I IWF Q G+ V + + D H W+ T F H + V
Sbjct: 10 PVVKWLLIINVAIWFVFQVIMEGFLRVPFTSIFGLFPGKVLFDFHIWQPFTYMFLHSMQV 69
Query: 65 LHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLL-VLGIY-HLLIQRFKL 121
H++FNM LW G +EQ G+ ++L Y LV V + +L LG++ + LI +
Sbjct: 70 THILFNMLMLWFFGAELEQR----WGSKFFLIYYLVAGVGAAILYCLGVWVYALITGSQT 125
Query: 122 EYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF---------ESLIF 172
V VG S VFG +L+ + ++ F+ P+ F SL+
Sbjct: 126 GLI--VPVVGASGAVFG--LLLAQGMIFGERIVYFFMLFPMKTKYFVALMGLVQLASLMT 181
Query: 173 TSIIVPQASFLGHLSGIIVGY 193
+S+ + ++L HL GI+ G+
Sbjct: 182 SSVAGGEVAYLAHLGGIVAGF 202
>gi|294777625|ref|ZP_06743076.1| peptidase, S54 (rhomboid) family protein [Bacteroides vulgatus
PC510]
gi|294448693|gb|EFG17242.1| peptidase, S54 (rhomboid) family protein [Bacteroides vulgatus
PC510]
Length = 225
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 77/188 (40%), Gaps = 48/188 (25%)
Query: 39 VGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYT 97
+GL + A D + ++IT F H H+ FNM ALW G +EQ+ G +L Y
Sbjct: 36 LGLHFFMASDFNPAQLITYMFMHGGFQHIFFNMFALWMFGRTLEQV----WGPKRFLSYY 91
Query: 98 LVLVVLSGLLVLGIYHLLIQRFK--------------------LEYFRRVTAVGYSCVVF 137
+V + +GL+ L+Q + EY +T VG S ++
Sbjct: 92 MVCGIGAGLV-----QELVQYIQYVTELSQYDSVNTGIAVIPMAEYLNLMTTVGASGAIY 146
Query: 138 GWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLG------------H 185
G + + P+S++ +F PI F P ++ F FLG H
Sbjct: 147 GILLAFGMLFPNSQMFVF-----PIPF-PVKAKYFVMGYAALEIFLGLGASTDGVAHFAH 200
Query: 186 LSGIIVGY 193
L G+I G+
Sbjct: 201 LGGMIFGF 208
>gi|55821808|ref|YP_140250.1| hypothetical protein stu1836 [Streptococcus thermophilus LMG 18311]
gi|55737793|gb|AAV61435.1| Conserved hypothetical, predicted membrane protein (TMS6)
[Streptococcus thermophilus LMG 18311]
Length = 224
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 28/147 (19%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR+IT F HI V H +FNM L+ +G + EQ+ GT +L L +L+G V+G
Sbjct: 59 WRLITPIFVHIGVEHFLFNMLTLYFMGRMAEQI----FGTLRFLG----LYLLAG--VMG 108
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGW---MTILSVKQPSSKLDLFG--FLSLPISFA 165
F L + V A G S +FG + IL S L+ G +L+L +
Sbjct: 109 ------NAFTLFFTPNVIAAGASTSLFGLFAAIVILGYYSHSPLLNQLGRNYLALIVI-- 160
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192
+LIF ++ P GHL G++ G
Sbjct: 161 ---NLIF-NLFTPSVGITGHLGGLVGG 183
>gi|314936330|ref|ZP_07843677.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
gi|313654949|gb|EFS18694.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
Length = 485
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 37/203 (18%)
Query: 7 YEIMEKPATSCIIGICSVIWFYIQKKNIGYSHV------GLSYETAVDGHHWRIITSAFS 60
Y +M P T +I I +IW Y++ +S + GL + V G +R+ITS F
Sbjct: 151 YMMMFSPMTYTLIAINVLIWLYMKIYLNHFSDIKLLDVGGLVHFNVVHGEWYRLITSMFL 210
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHL--LIQR 118
H + H++ NM +L+ G + V ++ +LGIY + L
Sbjct: 211 HFNFEHILMNMLSLFIFGKI------------------VETIVGPYKMLGIYLISGLFGN 252
Query: 119 F-KLEYFRRVTAVGYSCVVFGW----MTILSVKQPSSKLDLFGFLSLPISFAPFESLIFT 173
F L + +VG S +FG +T++ + + +K + L + + LIF
Sbjct: 253 FASLSFNISTISVGASGAIFGLIGAILTMMYLSKTFNKKMIIQLLVVVL------ILIFV 306
Query: 174 SIIVPQASFLGHLSGIIVGYAIA 196
S+ + + + HL G I G+ I
Sbjct: 307 SLFMSNINLMAHLGGFIGGFLIT 329
>gi|261823352|ref|YP_003261458.1| intramembrane serine protease GlpG [Pectobacterium wasabiae WPP163]
gi|261607365|gb|ACX89851.1| Rhomboid protease [Pectobacterium wasabiae WPP163]
gi|385873818|gb|AFI92338.1| Rhomboid protease glpG [Pectobacterium sp. SCC3193]
Length = 277
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 28/201 (13%)
Query: 4 PLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHH---WRIITSAFS 60
P + +K + + I +I + GY V +G WR + A
Sbjct: 86 PFLQTLQQKAGPLTLSVMVVTIAVFILMQISGYESVMTWLAFPAEGQQVQLWRWFSHALL 145
Query: 61 HISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
H S+LH++FN+ W L G VE++ LGT L TLV ++SG F
Sbjct: 146 HFSLLHILFNLMWWWYLGGPVEKV----LGTGKLLVITLVSALVSGWAQ--------SWF 193
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTS----I 175
YF ++ V Y+ + + W+ ++P G+L++P S F L + I
Sbjct: 194 SGTYFGGLSGVVYALMGYVWLR--GEREPD------GYLAMPRSLMVFALLWLVAGYFDI 245
Query: 176 IVPQASFLGHLSGIIVGYAIA 196
+ + H++G+IVG +A
Sbjct: 246 LGMSIANAAHVAGLIVGLLMA 266
>gi|76801230|ref|YP_326238.1| GlpG-like protein [Natronomonas pharaonis DSM 2160]
gi|76557095|emb|CAI48669.1| rhomboid family protein [Natronomonas pharaonis DSM 2160]
Length = 314
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W + S FSH S +HL+FN L+ G +VE+ +G+ ++ L +++GL +G
Sbjct: 142 WTWVISVFSHGSPMHLLFNAIVLYFFGPLVERQ----IGSKKFVGLFLASGIIAGLGQVG 197
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL-----SLPISFA 165
+ L V +G S + M +L++ P K+ LF F+ +L I FA
Sbjct: 198 V--------GLVTSEGVAVLGASGALMAIMGVLAITSPDLKVLLFFFIPMSIRTLTILFA 249
Query: 166 PFESLIFTSI--IVPQASFLGHLSGIIVG 192
F F S I+ + HL G+++G
Sbjct: 250 AFSIFAFVSDGGILDGVAHFAHLVGLLIG 278
>gi|251778447|ref|ZP_04821367.1| rhomboid family protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243082762|gb|EES48652.1| rhomboid family protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 321
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 42/179 (23%)
Query: 33 NIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTA 91
N+G + L Y+ G WR++T AF H + HL+FNM AL+ LG VE++ G
Sbjct: 170 NLGAKYNPLIYQ----GEVWRLVTCAFLHGGITHLLFNMYALYILGPQVEKI----FGIK 221
Query: 92 YYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM---TILSVKQP 148
YL V + S L + + + +VG S +FG + + S+KQ
Sbjct: 222 KYLIIYFVSAITSSSLGVALN------------KNTISVGASGAIFGLLGAILVFSIKQR 269
Query: 149 SSK-----LDLFG--FLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLI 200
L+L G L+L I F + LGH+ G + G +A LI
Sbjct: 270 HKVEKEYILNLIGVIILNLLIGFN-----------ISNIDNLGHIGGFLGGVIMARILI 317
>gi|120435155|ref|YP_860841.1| transmembrane rhomboid family protein [Gramella forsetii KT0803]
gi|117577305|emb|CAL65774.1| transmembrane rhomboid family protein [Gramella forsetii KT0803]
Length = 249
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 15 TSCIIGICSVIWFYIQK--KNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMS 72
T ++ I +VI+F + ++ Y + L + + W+IIT F H +H++FNM
Sbjct: 7 TVKVLLIINVIFFIGSQLIGDVAYEYFALWFIKNPNFEFWQIITHMFMHGGFMHILFNMY 66
Query: 73 ALWSLGV-VEQL 83
ALW+ G +EQ+
Sbjct: 67 ALWAFGSPIEQM 78
>gi|336272910|ref|XP_003351210.1| hypothetical protein SMAC_03513 [Sordaria macrospora k-hell]
gi|380092730|emb|CCC09483.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 291
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
+RI T F H+++ H V N+ A L EQ + G TA L + + G
Sbjct: 72 YRINTFPFIHLNIFHAVLNIIAFTPLLERFEQ--EHGTLTAVALFFGPFATIP------G 123
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLS---LPISFAPF 167
+ ++ I+RF L +G S VF + + +++ + K + + +S +P P
Sbjct: 124 LIYVFIERFILH--ANTPVMGASMWVFLLLGMEAIR--TYKTNPYFTISTYNIPTWITPL 179
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGM-NNYWALSML 212
++ T+ ++P +SFLGHL+G++VGY G + + WAL +
Sbjct: 180 LLVVVTAALLPSSSFLGHLAGLLVGYGFGLGYLKFLAPPEWALRFI 225
>gi|150003566|ref|YP_001298310.1| transmembrane rhomboid family protein [Bacteroides vulgatus ATCC
8482]
gi|345517236|ref|ZP_08796714.1| hypothetical protein BSFG_00455 [Bacteroides sp. 4_3_47FAA]
gi|423313295|ref|ZP_17291231.1| hypothetical protein HMPREF1058_01843 [Bacteroides vulgatus
CL09T03C04]
gi|149931990|gb|ABR38688.1| putative transmembrane rhomboid family protein [Bacteroides
vulgatus ATCC 8482]
gi|254833999|gb|EET14308.1| hypothetical protein BSFG_00455 [Bacteroides sp. 4_3_47FAA]
gi|392685645|gb|EIY78960.1| hypothetical protein HMPREF1058_01843 [Bacteroides vulgatus
CL09T03C04]
Length = 225
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 77/188 (40%), Gaps = 48/188 (25%)
Query: 39 VGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYT 97
+GL + A D + ++IT F H H+ FNM ALW G +EQ+ G +L Y
Sbjct: 36 LGLHFFMASDFNPAQLITYMFMHGGFQHIFFNMFALWMFGRTLEQV----WGPKRFLSYY 91
Query: 98 LVLVVLSGLLVLGIYHLLIQRFK--------------------LEYFRRVTAVGYSCVVF 137
+V + +GL+ L+Q + EY +T VG S ++
Sbjct: 92 MVCGIGAGLV-----QELVQYIQYVTELSQYDSVNTGIAVIPMAEYLNLMTTVGASGAIY 146
Query: 138 GWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLG------------H 185
G + + P+S++ +F PI F P ++ F FLG H
Sbjct: 147 GILLAFGMLFPNSQMFVF-----PIPF-PVKAKYFVMGYAALEIFLGLGASTDGVAHFAH 200
Query: 186 LSGIIVGY 193
L G+I G+
Sbjct: 201 LGGMIFGF 208
>gi|323492931|ref|ZP_08098071.1| GlpG protein [Vibrio brasiliensis LMG 20546]
gi|323312824|gb|EGA65948.1| GlpG protein [Vibrio brasiliensis LMG 20546]
Length = 278
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 38/195 (19%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T ++ +C VI F +Q+ G + + A W R + A H SV+H+ F
Sbjct: 98 PITLLVMAVCVVI-FALQQLGAGKAVFAALHFPAFSHQEWQLWRWFSHALLHFSVMHIAF 156
Query: 70 NMSALWSLGVVEQLGDV--GLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
N+ W LG GD+ LG+ LQ LV LSG G Y + + F +
Sbjct: 157 NLLWWWQLG-----GDIEQKLGSGKLLQLFLVSAALSG---AGQYWV-----EGANFGGL 203
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDL------FGFLSLPISF-APFESLIFTSIIVPQA 180
+ V Y+ V G++ ++ K P L + F + L + F PF ++ T+
Sbjct: 204 SGVVYALV--GYLWVIGYKAPQLGLSMPKPVIGFMLVWLVLGFVQPFMAIANTA------ 255
Query: 181 SFLGHLSGIIVGYAI 195
HL+G++ G AI
Sbjct: 256 ----HLAGLLAGVAI 266
>gi|289208399|ref|YP_003460465.1| rhomboid family protein [Thioalkalivibrio sp. K90mix]
gi|288944030|gb|ADC71729.1| Rhomboid family protein [Thioalkalivibrio sp. K90mix]
Length = 228
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGL 106
D W+++T F H ++HL NM A+W LGV +E G+ + Y L+ V+ +GL
Sbjct: 65 DFQLWQLLTYGFLHGGLVHLSVNMFAVWMLGVQIEN----AWGSRTFALYFLICVIGAGL 120
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP----- 161
+ L++ + T VG S VFG + + P+ +L LF FL +P
Sbjct: 121 V-----QLMVTAYGDNGMVYPT-VGASGGVFGVLLAFGMMFPNQRLYLF-FLPIPIKAKY 173
Query: 162 --ISFAPFESLIFTSIIVPQASFLGHLSGIIVGY 193
I++ E + S + + HL G+ G+
Sbjct: 174 FVIAYGALELYLGISGTLAGIAHFAHLGGMAFGF 207
>gi|456387124|gb|EMF52637.1| hypothetical protein SBD_5713 [Streptomyces bottropensis ATCC
25435]
Length = 297
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 38 HVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYT 97
+G S + +G +R++TS F H SV H++FNM +LW +G + LG A Y
Sbjct: 120 ELGSSLQGVAEGQWYRLVTSMFLHGSVTHILFNMLSLWWIGGPL---EAALGRARY---- 172
Query: 98 LVLVVLSGLLVLGIYHLL 115
L L +SGL + +LL
Sbjct: 173 LTLYFVSGLAGSALTYLL 190
>gi|55823724|ref|YP_142165.1| hypothetical protein str1836 [Streptococcus thermophilus CNRZ1066]
gi|55739709|gb|AAV63350.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
Length = 224
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 28/147 (19%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR+IT F HI V H +FNM L+ +G + EQ+ GT +L L +L+G V+G
Sbjct: 59 WRLITPIFVHIGVEHFLFNMLTLYFMGRMAEQI----FGTLRFLG----LYLLAG--VMG 108
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGW---MTILSVKQPSSKLDLFG--FLSLPISFA 165
F L + V A G S +FG + IL S L+ G +L+L +
Sbjct: 109 ------NAFTLFFTPNVIAAGASTSLFGLFAAIVILGYYSHSPLLNQLGRNYLALIVI-- 160
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192
+LIF ++ P GHL G++ G
Sbjct: 161 ---NLIF-NLFTPSVGITGHLGGLVGG 183
>gi|419643193|ref|ZP_14174952.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni ATCC
33560]
gi|380622905|gb|EIB41638.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni ATCC
33560]
Length = 172
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 23/153 (15%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
+G +W++++S F H ++ HL+ NM L+ G + + Y + + G L
Sbjct: 33 NGAYWQLLSSMFLHGNLTHLILNMIVLFQFGRILE--------TYLGALRFIFIYFVGGL 84
Query: 108 VLGIYHLLIQRFKLEYF-RRVTAVGYS---CVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
+ + + F +YF + +G S CV+ G+ +L K + L + L +S
Sbjct: 85 LCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVLD-KNSTKGLIV---AILLMS 140
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
FAP +I ++ GH+ G + GY +A
Sbjct: 141 FAPL-------LIGVNVAWYGHIFGFMCGYILA 166
>gi|418476663|ref|ZP_13045815.1| hypothetical protein SMCF_8893 [Streptomyces coelicoflavus ZG0656]
gi|371542672|gb|EHN71698.1| hypothetical protein SMCF_8893 [Streptomyces coelicoflavus ZG0656]
Length = 297
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 20/177 (11%)
Query: 44 ETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVL 103
E +G +R++T+ F H +H++FNM +LW LG + LG A Y L L
Sbjct: 127 EGVAEGQWYRLLTAMFLHTGYMHILFNMLSLWWLGGPL---EGALGRARY----LALYFC 179
Query: 104 SGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
SGL + +L+ + + ++G S +FG + D+ P+
Sbjct: 180 SGLAGSALTYLIAEPNQ-------PSLGASGAIFGLFGATATLVRRLNADM-----RPVV 227
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFV 220
+L+FT ++ H+ G++ G I + ++H L G LV V
Sbjct: 228 ILLAINLVFT-FTWANIAWQAHVGGLVAGAVIGYAMLHAPRQRRTLVQYGTCALVLV 283
>gi|340358738|ref|ZP_08681246.1| rhomboid family protein [Actinomyces sp. oral taxon 448 str. F0400]
gi|339885875|gb|EGQ75566.1| rhomboid family protein [Actinomyces sp. oral taxon 448 str. F0400]
Length = 280
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG 78
WR +T+AF H S+ HL FNM ALW LG
Sbjct: 113 WRFVTTAFLHASLWHLAFNMWALWVLG 139
>gi|257060526|ref|YP_003138414.1| rhomboid family protein [Cyanothece sp. PCC 8802]
gi|256590692|gb|ACV01579.1| Rhomboid family protein [Cyanothece sp. PCC 8802]
Length = 198
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 33 NIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAY 92
N Y+ L + V G WR++T+ F H S LHL NM L+ LG +L ++ G
Sbjct: 33 NTIYTLGALVPQVVVQGEVWRLLTANFLHYSWLHLFVNMIGLYFLG---RLVELKFGVFR 89
Query: 93 YLQYTLVLVVLSGLLVLGIY-HLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVK---QP 148
Y L++ +SGL + + + I +Y + A G + G +T L ++ Q
Sbjct: 90 Y----LIIYFVSGLGAMAAFTYFAITTNDTDYI-LLGASGAIMGLVGSITALFLQNFWQE 144
Query: 149 SSKLDL----FGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
S++ F LS+ + F +P+ SFL HL G+I+G+ +
Sbjct: 145 RSRIATRRLQFILLSIGLQFV-------FDFFIPEISFLSHLFGLIIGFFVG 189
>gi|380489719|emb|CCF36515.1| rhomboid family protein [Colletotrichum higginsianum]
Length = 232
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 54 IITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYH 113
+ITSAFSHI LHL NMS + VE +G A + +L+ L L G+ H
Sbjct: 78 LITSAFSHIQPLHLFVNMSTYKT--YVESFYLLGTSPARF-----ILLALGSGLAAGLSH 130
Query: 114 LLIQRFK--LEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFG 156
+ R + ++ TAVG S ++ G T L+ P+ K+ L G
Sbjct: 131 VYSTRRRRGVKSLVDKTAVGASGILTGLGTALACMFPTLKVRLSG 175
>gi|269954822|ref|YP_003324611.1| Rhomboid family protein [Xylanimonas cellulosilytica DSM 15894]
gi|269303503|gb|ACZ29053.1| Rhomboid family protein [Xylanimonas cellulosilytica DSM 15894]
Length = 282
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 25/199 (12%)
Query: 18 IIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVL--HLVFNMSALW 75
+IGIC+V F +Q G++ + G +R +T+AF H + H++FNM W
Sbjct: 83 LIGICAVS-FVLQLAVPGWTQQFMYAPVLGVGEPFRFLTAAFLHSTGFFGHILFNM---W 138
Query: 76 SLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCV 135
+L V Q + LG A ++ VL + G + + + +Q V A G
Sbjct: 139 ALYVTGQFLEPVLGRARFIALC-VLSAIGGSVAVLLLASPVQAV-------VGASGMVFG 190
Query: 136 VFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAI 195
+FG M + + + + G +++ +I +VP S+ GHL G++VG A+
Sbjct: 191 LFGAMVPVLRRLGGNAAQIIGLIAI-------NGVI--GFLVPGISWQGHLGGLVVGLAL 241
Query: 196 AWGLIHGMNNYWALSMLGW 214
+ H L GW
Sbjct: 242 GYAFAHAPRGRQKL--FGW 258
>gi|224023540|ref|ZP_03641906.1| hypothetical protein BACCOPRO_00242 [Bacteroides coprophilus DSM
18228]
gi|224016762|gb|EEF74774.1| hypothetical protein BACCOPRO_00242 [Bacteroides coprophilus DSM
18228]
Length = 226
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 29/166 (17%)
Query: 17 CIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWS 76
C G+ + I +N+ +GL + A D + ++I+ F H + H+ FNM A+W
Sbjct: 18 CFFGMLVAKRYGIDVENL----LGLHFFLASDFNLSQLISYMFMHANFQHIFFNMFAVWM 73
Query: 77 LG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKL-------------- 121
G V+EQ+ G +L Y L+ + +G L+ + L F L
Sbjct: 74 FGRVLEQV----WGPKRFLTYYLICGIGAG-LIQELVQYLEYAFTLSNYDSVNLGIAGGI 128
Query: 122 ----EYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
EY +T VG S V+G + + P+S++ +F L PI
Sbjct: 129 IPMEEYLNMMTTVGASGAVYGILLAFGMLFPNSQMFIFP-LPFPIK 173
>gi|163803401|ref|ZP_02197276.1| hypothetical protein 1103602000602_AND4_16444 [Vibrio sp. AND4]
gi|159172805|gb|EDP57650.1| hypothetical protein AND4_16444 [Vibrio sp. AND4]
Length = 279
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 42/198 (21%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T ++ +C VI+F +Q G + + A +G W R I+ A H SV H+VF
Sbjct: 98 PVTLLVMLVCVVIYF-LQMFGFGDGVFSVLHFPAFEGQQWQLWRWISHALLHFSVTHIVF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLE--YFR 125
N+ W LG GD+ L + LQ + LSG +F +E F
Sbjct: 157 NLLWWWQLG-----GDIERRLSSGKLLQIFFISAALSG----------AGQFYVEGANFG 201
Query: 126 RVTAVGYSCVVFGWMTILSVKQPSSKLDL----FGFLSLPIS---FAPFESLIFTSIIVP 178
++ V Y+ + G++ IL + P L L GF+ + ++ F PF ++ T+
Sbjct: 202 GLSGVVYA--LLGYLWILGYRCPHLGLTLPKPMIGFMLVWLALGFFQPFLAIANTA---- 255
Query: 179 QASFLGHLSGIIVGYAIA 196
HL G++ G AIA
Sbjct: 256 ------HLVGLLSGMAIA 267
>gi|285019203|ref|YP_003376914.1| hypothetical protein XALc_2443 [Xanthomonas albilineans GPE PC73]
gi|283474421|emb|CBA16922.1| hypothetical uncharacterized membrane protein [Xanthomonas
albilineans GPE PC73]
Length = 218
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 20/163 (12%)
Query: 42 SYETAVDGHH---WRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYT 97
S++ G + W+++T AF H HL+FNM AL+ G +EQ G +L Y
Sbjct: 41 SFDPFSSGQNFQIWQLLTYAFLHGGFSHLLFNMLALYMFGGPLEQT----WGNKRFLTYY 96
Query: 98 LVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGF 157
LV V +GL L + +++ Y +G S +FG + + P+ ++ L F
Sbjct: 97 LVCVAGAGLCQLLVGWWMLRNGSAPY----PTLGASGGIFGLLLAFGMLFPNQRVMLL-F 151
Query: 158 LSLPIS-------FAPFESLIFTSIIVPQASFLGHLSGIIVGY 193
+P++ F E ++ + P + HL G++ G+
Sbjct: 152 PPIPMTARTFVIVFGALELVMGFAGWEPGVAHFAHLGGMLFGW 194
>gi|359786402|ref|ZP_09289537.1| serine protease GlpG [Halomonas sp. GFAJ-1]
gi|359296252|gb|EHK60505.1| serine protease GlpG [Halomonas sp. GFAJ-1]
Length = 282
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 40/172 (23%)
Query: 3 RPLFYEIMEKPATSCIIGICSVIW-----------FYIQKKNIGYSHVGLSY----ETAV 47
R +F I + P T+ +IGI +I+ + +G S L Y +T
Sbjct: 75 RNIFAIIRQLPVTALMIGISVLIFALTGVFGDLLIVALTIVPVGVSGGQLVYGSLGDTLA 134
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQL------------GDVGLGTAYYL 94
G WR+++ AF H +HL+FN+ +W G +EQL +G A Y+
Sbjct: 135 SGQVWRLLSPAFLHFGWMHLIFNLMWVWYFGRQIEQLQGSRTMLLLLLVAGIGANLAQYV 194
Query: 95 QYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGY----SCVVF--GWM 140
T++ +SG+ +Y LL + + RRV G+ VVF GWM
Sbjct: 195 TGTVLFGGMSGV----VYALLAHVWLMS--RRVPRSGFFVPQMLVVFMLGWM 240
>gi|228476169|ref|ZP_04060877.1| rhomboid family protein [Staphylococcus hominis SK119]
gi|228269992|gb|EEK11472.1| rhomboid family protein [Staphylococcus hominis SK119]
Length = 485
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 37/203 (18%)
Query: 7 YEIMEKPATSCIIGICSVIWFYIQKKNIGYSHV------GLSYETAVDGHHWRIITSAFS 60
Y +M P T +I I +IW Y++ +S + GL + V G +R+ITS F
Sbjct: 151 YMMMFSPMTYTLIAINVLIWLYMKIYLNHFSDIKLLDVGGLVHFNVVHGEWYRLITSMFL 210
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHL--LIQR 118
H + H++ NM +L+ G + V ++ +LGIY + L
Sbjct: 211 HFNFEHILMNMLSLFIFGKI------------------VETIVGPYKMLGIYLISGLFGN 252
Query: 119 F-KLEYFRRVTAVGYSCVVFGW----MTILSVKQPSSKLDLFGFLSLPISFAPFESLIFT 173
F L + +VG S +FG +T++ + + +K + L + + LIF
Sbjct: 253 FASLSFNISTISVGASGAIFGLIGAILTMMYLSKTFNKKMIIQLLVVVL------ILIFV 306
Query: 174 SIIVPQASFLGHLSGIIVGYAIA 196
S+ + + + HL G I G+ I
Sbjct: 307 SLFMSNINLMAHLGGFIGGFLIT 329
>gi|384155260|ref|YP_005538075.1| rhomboid-like protein [Arcobacter butzleri ED-1]
gi|345468814|dbj|BAK70265.1| rhomboid-like protein [Arcobacter butzleri ED-1]
Length = 187
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 11 EKPATSCIIGICSVIWFYIQKKNI--GYSHVGLSYETAVDGHHWRIITSAFSHISVLHLV 68
+K T+ + I + FY+ + N+ G GL+ + G +W+ +TS FSH + HL
Sbjct: 6 KKDFTATNVIIIITVLFYLIQINVQQGSLLFGLNLYFLIGGFYWQPLTSMFSHGGIAHLA 65
Query: 69 FNMSALWSLG 78
NM LW G
Sbjct: 66 MNMFVLWQFG 75
>gi|408371345|ref|ZP_11169112.1| peptidase s54, rhomboid domain protein [Galbibacter sp. ck-I2-15]
gi|407743175|gb|EKF54755.1| peptidase s54, rhomboid domain protein [Galbibacter sp. ck-I2-15]
Length = 215
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
G RI+TS F H+ + HL+FNM L+ + V LG+ +L L+ +V +L
Sbjct: 41 GEKIRILTSGFLHVDMTHLLFNMLTLYFFAPIVV---VYLGSVKFLIIYLISLVAGNVLS 97
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPI 162
+ I+H K EY +AVG S V G + + QP +L F F+ +P+
Sbjct: 98 M-IFH------KNEY--HYSAVGASGAVTGILYAAILLQPDMRLGFF-FIPIPV 141
>gi|309811347|ref|ZP_07705134.1| peptidase, S54 family [Dermacoccus sp. Ellin185]
gi|308434654|gb|EFP58499.1| peptidase, S54 family [Dermacoccus sp. Ellin185]
Length = 311
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 18 IIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHIS--VLHLVFNMSALW 75
II IC ++W + Y V A D WR +TS F+H + +HL+FNM AL+
Sbjct: 96 IIAICCLVWLGQLASDALYRDVSFVAVFARD-EPWRYLTSGFAHDTGTPMHLLFNMMALY 154
Query: 76 SLGV-VEQL-GDVGLGTAYYL 94
+G +E L G V G Y L
Sbjct: 155 FMGQYLEPLIGRVRFGALYLL 175
>gi|308387764|pdb|2XOV|A Chain A, Crystal Structure Of E.Coli Rhomboid Protease Glpg, Native
Enzyme
Length = 181
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITSAFSHISVLHLV 68
P T ++ C V+ +I + +G V L ++ + WR T A H S++H++
Sbjct: 5 PVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHIL 62
Query: 69 FNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
FN+ W L G VE+ LG+ + TL+ +LSG + Q+F +F +
Sbjct: 63 FNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ--------QKFSGPWFGGL 110
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDL 154
+ V Y+ + + W+ + P S + L
Sbjct: 111 SGVVYALMGYVWLR--GERDPQSGIYL 135
>gi|377578368|ref|ZP_09807346.1| rhomboid protease glpG [Escherichia hermannii NBRC 105704]
gi|377540298|dbj|GAB52511.1| rhomboid protease glpG [Escherichia hermannii NBRC 105704]
Length = 276
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 88/201 (43%), Gaps = 30/201 (14%)
Query: 6 FYEIMEKPATSCIIGICSV-IWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITSAFS 60
F + + A IG+ +V I YI +G V Y+ ++D WR T A
Sbjct: 85 FMATLRERAGPFTIGLAAVCIAVYILMLTLGDQAVMIWLAWPYDPSLDFEFWRYFTHALL 144
Query: 61 HISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
H SV+H+ FN+ W L G VE+ LG+ + T + +LSG + +F
Sbjct: 145 HFSVMHITFNLLWWWYLGGPVEKR----LGSGKLIVLTAIAALLSGFVQ--------HKF 192
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKL----DLFGFLSLPISFAPFESLIFTSI 175
+F ++ V Y+ + + W+ + P S + L F L + F+ +F
Sbjct: 193 SGAWFGGLSGVVYALMGYVWLR--GERDPESGIVMPRGLMVFALLWLVAGWFD--LFGMS 248
Query: 176 IVPQASFLGHLSGIIVGYAIA 196
I A H++G++VG A+A
Sbjct: 249 IANAA----HVTGLLVGLAMA 265
>gi|315636015|ref|ZP_07891274.1| rhomboid family protein [Arcobacter butzleri JV22]
gi|315479671|gb|EFU70345.1| rhomboid family protein [Arcobacter butzleri JV22]
Length = 187
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 11 EKPATSCIIGICSVIWFYIQKKNI--GYSHVGLSYETAVDGHHWRIITSAFSHISVLHLV 68
+K T+ + I + FY+ + N+ G GL+ + G +W+ +TS FSH + HL
Sbjct: 6 KKDFTATNVIIIITVLFYLIQINVQQGSLLFGLNLYFLIGGFYWQPLTSMFSHGGIAHLA 65
Query: 69 FNMSALWSLG 78
NM LW G
Sbjct: 66 MNMFVLWQFG 75
>gi|388583817|gb|EIM24118.1| hypothetical protein WALSEDRAFT_42280 [Wallemia sebi CBS 633.66]
Length = 216
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 17/158 (10%)
Query: 16 SCIIGICSVIWFYIQKKN-IGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSAL 74
+ II + SVI+F Q N + S + + A D ++TS FSH S+ HL FNM AL
Sbjct: 9 AGIIALNSVIFFAWQVPNPVLRSFMKRHFLHAHDTPLHTMLTSVFSHRSIAHLGFNMLAL 68
Query: 75 WSLG-----VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRR--V 127
+S G +E+ GT+ Y L L G+ L +Y +R +
Sbjct: 69 YSFGPLSFKFLEKQETELEGTSVYKWLALYLSA-------GLLSNLASTAATKYTQRTLM 121
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDL--FGFLSLPIS 163
++G S V+ + + + P K++L F + PIS
Sbjct: 122 PSLGASGAVYSTLVMSAYSNPDIKVNLIFFPWFGFPIS 159
>gi|441432485|ref|YP_007354527.1| Integral membrane protein [Acanthamoeba polyphaga moumouvirus]
gi|371944779|gb|AEX62601.1| putative rhomboid protein [Moumouvirus Monve]
gi|440383565|gb|AGC02091.1| Integral membrane protein [Acanthamoeba polyphaga moumouvirus]
Length = 177
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 28/139 (20%)
Query: 58 AFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVL--SGLLVLGIYHLL 115
F H ++ HL+ N +L+SL +E L +G Q+ L ++ + ++L I H L
Sbjct: 48 TFYHANLEHLLANSISLYSLSFLEDL----MGHK---QFALAIIFIWIVSSIILYIIHAL 100
Query: 116 IQRFKLEYFRRVTAVGYSCVVFGWMTI--LSVKQPSSKLDLFGFLSLPISFAPFESLIFT 173
I R+V VG+S V+FG + I +S+ Q + L G L +S P
Sbjct: 101 IPS------RKVYTVGFSGVIFGLIVIYYMSLGQ-GVGITLTG---LVVSILP------- 143
Query: 174 SIIVPQASFLGHLSGIIVG 192
+++P SF GHLSGII G
Sbjct: 144 QLVIPGISFEGHLSGIIAG 162
>gi|418619999|ref|ZP_13182810.1| peptidase, S54 family [Staphylococcus hominis VCU122]
gi|374823562|gb|EHR87557.1| peptidase, S54 family [Staphylococcus hominis VCU122]
Length = 485
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 37/203 (18%)
Query: 7 YEIMEKPATSCIIGICSVIWFYIQKKNIGYSHV------GLSYETAVDGHHWRIITSAFS 60
Y +M P T +I I +IW Y++ +S + GL + V G +R+ITS F
Sbjct: 151 YMMMFSPMTYTLIAINVLIWLYMKIYLNHFSDIKLLDVGGLVHFNVVHGEWYRLITSMFL 210
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHL--LIQR 118
H + H++ NM +L+ G + V ++ +LGIY + L
Sbjct: 211 HFNFEHILMNMLSLFIFGKI------------------VETIVGPYKMLGIYLISGLFGN 252
Query: 119 F-KLEYFRRVTAVGYSCVVFGW----MTILSVKQPSSKLDLFGFLSLPISFAPFESLIFT 173
F L + +VG S +FG +T++ + + +K + L + + LIF
Sbjct: 253 FASLSFNISTISVGASGAIFGLIGAILTMMYLSKTFNKKMIIQLLVVVL------ILIFV 306
Query: 174 SIIVPQASFLGHLSGIIVGYAIA 196
S+ + + + HL G I G+ I
Sbjct: 307 SLFMSNINLMAHLGGFIGGFLIT 329
>gi|166007307|pdb|3B45|A Chain A, Crystal Structure Of Glpg At 1.9a Resolution
Length = 180
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITSAFSHISVLHLV 68
P T ++ C V+ +I + +G V L ++ + WR T A H S++H++
Sbjct: 5 PVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHIL 62
Query: 69 FNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
FN+ W L G VE+ LG+ + TL+ +LSG + Q+F +F +
Sbjct: 63 FNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ--------QKFSGPWFGGL 110
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDL 154
+ V Y+ + + W+ + P S + L
Sbjct: 111 SGVVYALMGYVWLR--GERDPQSGIYL 135
>gi|122921469|pdb|2O7L|A Chain A, The Open-Cap Conformation Of Glpg
Length = 180
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITSAFSHISVLHLV 68
P T ++ C V+ +I + +G V L ++ + WR T A H S++H++
Sbjct: 3 PVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHIL 60
Query: 69 FNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
FN+ W L G VE+ LG+ + TL+ +LSG + Q+F +F +
Sbjct: 61 FNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ--------QKFSGPWFGGL 108
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDL 154
+ V Y+ + + W+ + P S + L
Sbjct: 109 SGVVYALMGYVWLR--GERDPQSGIYL 133
>gi|421453280|ref|ZP_15902636.1| Integral membrane protein (Rhomboid family) [Streptococcus
salivarius K12]
gi|400181589|gb|EJO15856.1| Integral membrane protein (Rhomboid family) [Streptococcus
salivarius K12]
Length = 224
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 28/147 (19%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR++T F HI V H +FNM L+ +G + EQ+ GT +L L +L+G V+G
Sbjct: 59 WRLVTPIFVHIGVEHFLFNMLTLYFMGKMAEQI----FGTLRFLG----LYLLAG--VMG 108
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMT---ILSVKQPSSKLDLFG--FLSLPISFA 165
F L + V A G S +FG IL S L+ G +L+L +
Sbjct: 109 ------NAFTLLFTPNVIAAGASTSLFGLFAAVVILGYYSHSPLLNQLGRNYLALIVI-- 160
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192
+LIF ++ P GHL G++ G
Sbjct: 161 ---NLIF-NLFTPSVGITGHLGGLVGG 183
>gi|308387765|pdb|2XOW|A Chain A, Structure Of Glpg In Complex With A Mechanism-Based
Isocoumarin Inhibitor
gi|359546095|pdb|3TXT|A Chain A, Crystal Structure Of Glpg In Complex With Inhibitor Dfp
gi|449802183|pdb|3ZEB|A Chain A, A Complex Of Glpg With Isocoumarin Inhibitor Covalently
Bonded To Serine 201 And Histidine 150
Length = 179
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITSAFSHISVLHLV 68
P T ++ C V+ +I + +G V L ++ + WR T A H S++H++
Sbjct: 4 PVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHIL 61
Query: 69 FNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
FN+ W L G VE+ LG+ + TL+ +LSG + Q+F +F +
Sbjct: 62 FNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ--------QKFSGPWFGGL 109
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDL 154
+ V Y+ + + W+ + P S + L
Sbjct: 110 SGVVYALMGYVWLR--GERDPQSGIYL 134
>gi|161505916|ref|YP_001573028.1| intramembrane serine protease GlpG [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|189041237|sp|A9MMA7.1|GLPG_SALAR RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|160867263|gb|ABX23886.1| hypothetical protein SARI_04097 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 276
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 91/201 (45%), Gaps = 27/201 (13%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITS 57
P + E+ P T ++ C ++ YI +G V ++ A+ WR T
Sbjct: 84 PFLATLRERAGPVTWTVMVACVLV--YIAMNLVGDQTVMVWLAWPFDPALKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
F H S++H++FN+ W L G VE+ LG+ + T++ +LSG +
Sbjct: 142 IFMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITVISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL-FGFLSLPISFAPFESLIFTSI 175
Q+F +F ++ V Y+ + + W+ + P S + L G + + + L + +
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQSGIYLQRGLIIFALLWIVAGWLDWFGM 247
Query: 176 IVPQASFLGHLSGIIVGYAIA 196
+ + H++G+IVG A+A
Sbjct: 248 SMANGA---HIAGLIVGLAMA 265
>gi|145332609|ref|NP_001078170.1| rhomboid-like protein 14 [Arabidopsis thaliana]
gi|332642459|gb|AEE75980.1| rhomboid-like protein 14 [Arabidopsis thaliana]
Length = 173
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 140 MTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
M ++ Q ++G L +P +A + LI + VP ASFLGHL GI+ G
Sbjct: 1 MKVVLNSQAEDYSSVYGIL-VPTKYAAWAELILVQMFVPNASFLGHLGGILAG 52
>gi|118138334|pdb|2IC8|A Chain A, Crystal Structure Of Glpg
gi|119390593|pdb|2NRF|A Chain A, Crystal Structure Of Glpg, A Rhomboid Family Intramembrane
Protease
gi|119390594|pdb|2NRF|B Chain B, Crystal Structure Of Glpg, A Rhomboid Family Intramembrane
Protease
gi|390980879|pdb|3UBB|A Chain A, The Crystal Structure Of Glpg In Complex With A
Phosphonofluoridate Inhibitor
Length = 182
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITSAFSHISVLHLV 68
P T ++ C V+ +I + +G V L ++ + WR T A H S++H++
Sbjct: 5 PVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHIL 62
Query: 69 FNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
FN+ W L G VE+ LG+ + TL+ +LSG + Q+F +F +
Sbjct: 63 FNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ--------QKFSGPWFGGL 110
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDL 154
+ V Y+ + + W+ + P S + L
Sbjct: 111 SGVVYALMGYVWLR--GERDPQSGIYL 135
>gi|322515950|ref|ZP_08068891.1| rhomboid family protein [Streptococcus vestibularis ATCC 49124]
gi|322125624|gb|EFX96954.1| rhomboid family protein [Streptococcus vestibularis ATCC 49124]
Length = 224
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 28/147 (19%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR++T F HI V H +FNM L+ +G + EQ+ GT +L L +L+G V+G
Sbjct: 59 WRLVTPIFVHIGVEHFLFNMLTLYFMGRMAEQI----FGTLRFLG----LYLLAG--VMG 108
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGW---MTILSVKQPSSKLDLFG--FLSLPISFA 165
F L + V A G S +FG + IL S L+ G +L+L +
Sbjct: 109 ------NAFTLLFTPNVIAAGASTSLFGLFAAIVILGYYSHSPLLNQLGRNYLALIVI-- 160
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192
+LIF ++ P GHL G++ G
Sbjct: 161 ---NLIF-NLFTPSVGITGHLGGLVGG 183
>gi|71908004|ref|YP_285591.1| rhomboid-like protein [Dechloromonas aromatica RCB]
gi|71847625|gb|AAZ47121.1| Rhomboid-like protein [Dechloromonas aromatica RCB]
Length = 358
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLG 78
DG WR+ ++ F H +LHL+ NM+ALW +G
Sbjct: 60 DGEWWRLGSALFLHFGILHLLLNMAALWDVG 90
>gi|343495941|ref|ZP_08734049.1| GlpG protein [Vibrio nigripulchritudo ATCC 27043]
gi|342821993|gb|EGU56755.1| GlpG protein [Vibrio nigripulchritudo ATCC 27043]
Length = 278
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 15/106 (14%)
Query: 9 IMEKPATSCIIG--ICSVIWFY----IQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHI 62
I K +IG +C VI+F ++ + H S + A + WR T A H
Sbjct: 92 IAAKAGPVTLIGMVVCGVIFFAQIIGFERALLELFHFPASSQQAFE--IWRWFTHAILHF 149
Query: 63 SVLHLVFNMSALWSLGVVEQLGDV--GLGTAYYLQYTLVLVVLSGL 106
SVLH+VFN+ W LG GD+ LG+ +Q LV +SGL
Sbjct: 150 SVLHIVFNVLWWWQLG-----GDIERKLGSGKVIQIFLVSAAVSGL 190
>gi|157736846|ref|YP_001489529.1| rhomboid-like protein [Arcobacter butzleri RM4018]
gi|157698700|gb|ABV66860.1| rhomboid-like protein [Arcobacter butzleri RM4018]
Length = 187
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 11 EKPATSCIIGICSVIWFYIQKKNI--GYSHVGLSYETAVDGHHWRIITSAFSHISVLHLV 68
+K T+ + I + FY+ + N+ G GL+ + G +W+ +TS FSH + HL
Sbjct: 6 KKDFTATNVIIIITVLFYLIQINVQQGSLLFGLNLYFLIGGFYWQPLTSIFSHGGIAHLA 65
Query: 69 FNMSALWSLG 78
NM LW G
Sbjct: 66 MNMFVLWQFG 75
>gi|403050890|ref|ZP_10905374.1| hypothetical protein AberL1_04958 [Acinetobacter bereziniae LMG
1003]
Length = 269
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 29/177 (16%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAY----YLQYTLVLVVLSGLL 107
+R+ +S F H +LHL+ NM W+L + + + G Y YL L+ +LSG L
Sbjct: 66 YRLFSSMFFHFGILHLLMNM---WALYIFGDVAEKTFGKFYFLGLYLLAGLMGSLLSGYL 122
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGW---MTILSVKQPS-------SKLDLFGF 157
+ + +Q F + V+A G S V G +T+LS+ P+ K L
Sbjct: 123 DIRNSYEFLQHFDQKLIPHVSA-GASGAVMGLGGALTLLSLFPPTPNQRFVLDKRSLLTV 181
Query: 158 LSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG--YAIAWGLIHGMNNYWALSML 212
L++ ++F S I + H+ G+++G A+AW ++ M A++M+
Sbjct: 182 LAINLAFGFLASGINNA---------AHIGGMLMGAVMALAWYVMQRMKAPIAVNMI 229
>gi|449303984|gb|EMC99991.1| hypothetical protein BAUCODRAFT_30429 [Baudoinia compniacensis UAMH
10762]
Length = 286
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
+R+ T F H ++LH N AL L ++E+ ++ +T + L G L
Sbjct: 72 YRLNTYPFLHRNILHFALNCFAL--LPLLERFEAEHGTVVTFILFTGMFGTLPGSL---- 125
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSK--LDLFGFLSLPISFAPFES 169
+ L++R+ AVG S VF + +VK S +L G + +P P
Sbjct: 126 -YTLLERYVFHL--NGAAVGASVWVFLLLANEAVKTYRSNPYFELAG-VKIPTWTTPIFF 181
Query: 170 LIFTSIIVPQASFLGHLSGIIVGYAIAWGL 199
++ + +VP SFLGH+ G VGY WGL
Sbjct: 182 ILVINFLVPHTSFLGHMCGAAVGY--LWGL 209
>gi|371944005|gb|AEX61833.1| putative rhomboid protein [Megavirus courdo7]
Length = 152
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 28/153 (18%)
Query: 43 YETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQL-GDVGLGTAYYLQYTLVLV 101
Y+T+ + ++ + T + H ++ HL+ N +L+ L +E L G A ++ +
Sbjct: 12 YDTSNELVNYSLRT--YYHANIEHLIANSISLYYLSFLEDLLGHTQFAIA------IIFI 63
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI--LSVKQPSSKLDLFGFLS 159
L ++L I H ++ R+V VG+S V+FG + I S+ Q + + + G +
Sbjct: 64 WLVSSMILYIIHAIMPS------RKVYTVGFSGVIFGLIVIYYFSLNQ-NPGITMTGLI- 115
Query: 160 LPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
IS P ++VP SF GHLSGII G
Sbjct: 116 --ISILP-------QLVVPGISFEGHLSGIIAG 139
>gi|148271189|ref|YP_001220750.1| hypothetical protein CMM_0011 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147829119|emb|CAN00017.1| conserved membrane protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 287
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 35/210 (16%)
Query: 18 IIGICSVIWFYIQKKNIGYSHVGLS------YETAVDGHH--WRIITSAFSH--ISVLHL 67
I+ +C+V+W +Q + ++V S Y + G + WR++TSAF+H S+LH+
Sbjct: 79 IMAVCAVVWI-LQVLPVVGAYVTTSLWFAPVYGSVASGAYEPWRMLTSAFTHSPDSILHI 137
Query: 68 VFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRR 126
VFNM +++ G V+E + LG A +L L+ + L V I + + +
Sbjct: 138 VFNMLSVFVFGRVLEPM----LGRARFLALFLISALGGSLAVEVIGSAMGEPLQ------ 187
Query: 127 VTAVGYSCVVFGWMT---ILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
VG S +FG M +L+ K + L G +++ + +V S+
Sbjct: 188 -AVVGASGAIFGLMGGYFVLARKLGGNVGPLLGIIAIN---------LLLGFVVQGVSWQ 237
Query: 184 GHLSGIIVGYAIAWGLIHGMNNYWALSMLG 213
H+ G++ G +A L+ + + +G
Sbjct: 238 AHVGGLVTGALVALVLLRTRDARQRGAQIG 267
>gi|182627147|ref|ZP_02954861.1| rhomboid family protein [Clostridium perfringens D str. JGS1721]
gi|177907465|gb|EDT70134.1| rhomboid family protein [Clostridium perfringens D str. JGS1721]
Length = 342
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 20/105 (19%)
Query: 39 VGLSYETAV--DGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQ 95
+G + A+ G ++R++TS F H ++HL+FNM AL+ LG +E++ G YL
Sbjct: 189 MGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERI----YGAKKYLA 244
Query: 96 YTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM 140
V +++ + L YF V VG S +FG +
Sbjct: 245 IYFVSGIVASIFSL-------------YFSPVMGVGASGAIFGLL 276
>gi|118138503|pdb|2IRV|A Chain A, Crystal Structure Of Glpg, A Rhomboid Intramembrane Serine
Protease
gi|118138504|pdb|2IRV|B Chain B, Crystal Structure Of Glpg, A Rhomboid Intramembrane Serine
Protease
Length = 182
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 21/147 (14%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITSAFSHISVLHLV 68
P T ++ C V+ +I + +G V L ++ + WR T A H S++H++
Sbjct: 4 PVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHIL 61
Query: 69 FNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
FN+ W L G VE+ LG+ + TL+ +LSG + Q+F +F +
Sbjct: 62 FNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ--------QKFSGPWFGGL 109
Query: 128 TAVGYSCVVFGWMTILSVKQPSSKLDL 154
+ V Y+ + + W+ + P S + L
Sbjct: 110 SGVVYALMGYVWLR--GERDPQSGIYL 134
>gi|153951804|ref|YP_001397918.1| rhomboid family protein [Campylobacter jejuni subsp. doylei 269.97]
gi|152939250|gb|ABS43991.1| rhomboid family protein [Campylobacter jejuni subsp. doylei 269.97]
Length = 172
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 23/153 (15%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
+G +W++++S F H +++HL+ NM L+ G + + Y + + G L
Sbjct: 33 NGAYWQLLSSMFLHGNLIHLILNMIVLFQFGRILE--------TYLGALRFIFIYFIGGL 84
Query: 108 VLGIYHLLIQRFKLEYF-RRVTAVGYS---CVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
+ + + F +YF + +G S CV+ G+ +L K + L + L +S
Sbjct: 85 LCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVLD-KNSTKGLIV---AILLMS 140
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
FAP ++ ++ GH+ G + GY +A
Sbjct: 141 FAPL-------LMGVNVAWYGHIFGFMCGYILA 166
>gi|383786745|ref|YP_005471314.1| hypothetical protein [Fervidobacterium pennivorans DSM 9078]
gi|383109592|gb|AFG35195.1| putative membrane protein [Fervidobacterium pennivorans DSM 9078]
Length = 233
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 40 GLSYETAVD-GHHWRIITSAFSHISVLHLVFNMSALWSLG 78
G Y VD G WRI+T+ F H LHL FNM AL+ LG
Sbjct: 47 GAQYGPLVDQGEWWRIVTAMFMHGGFLHLAFNMYALYILG 86
>gi|329938622|ref|ZP_08288018.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
gi|329302113|gb|EGG46005.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
Length = 303
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 27/181 (14%)
Query: 37 SHVGLS-YETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQ 95
S+ G S E +G ++R++T+ F H H++FNM +LW LG + LG A +
Sbjct: 125 SYTGFSPLEGVAEGQYYRLLTAMFLHGGYAHIIFNMLSLWWLGAPLE---KALGRARF-- 179
Query: 96 YTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLF 155
L L ++SGL + +LL + ++G S +FG +V D+
Sbjct: 180 --LALYLVSGLAGSALSYLLAAANQ-------PSLGASGAIFGLFGATAVLVRRLNYDMR 230
Query: 156 GFLSLPISFAPFESLIFT---SIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSML 212
++L + +L+ T S I +A H+ G++ G I + ++H AL
Sbjct: 231 PVIALLVI-----NLVLTFGWSGIAWEA----HIGGLVAGVMIGYAMVHAPRERRALVQY 281
Query: 213 G 213
G
Sbjct: 282 G 282
>gi|18310434|ref|NP_562368.1| rhomboid family protein [Clostridium perfringens str. 13]
gi|18145114|dbj|BAB81158.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 342
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 20/105 (19%)
Query: 39 VGLSYETAV--DGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQ 95
+G + A+ G ++R++TS F H ++HL+FNM AL+ LG +E++ Y +
Sbjct: 189 MGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERI--------YGAK 240
Query: 96 YTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM 140
L + +SG +V I+ L YF V VG S +FG +
Sbjct: 241 KYLAIYFVSG-IVASIFSL--------YFSPVMGVGASGAIFGLL 276
>gi|389571781|ref|ZP_10161869.1| peptidase [Bacillus sp. M 2-6]
gi|388428267|gb|EIL86064.1| peptidase [Bacillus sp. M 2-6]
Length = 512
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVV 80
++G WR +T F HI + HL+FN ALWS+G
Sbjct: 223 LEGEWWRFVTPMFLHIGLTHLLFNTFALWSVGAA 256
>gi|340621608|ref|YP_004740060.1| hypothetical protein Ccan_08350 [Capnocytophaga canimorsus Cc5]
gi|339901874|gb|AEK22953.1| Uncharacterized protein C13E711 [Capnocytophaga canimorsus Cc5]
Length = 249
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 45/192 (23%)
Query: 50 HHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLG----------DVGLGTA------- 91
H W+ +T F H ++HL FNM ALW+ G +E + G+G A
Sbjct: 45 HLWQFVTHMFMHGDLMHLFFNMYALWAFGTPLESIWGKQKFLFFYFSCGIGAALMHLGVN 104
Query: 92 -YYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVT---------------AVGYSCV 135
YY Q + + G+ + I L + L + + AVG S
Sbjct: 105 YYYYQQGVEALTAVGVPLENINELAAEGKYLVAWSDIVSMSTLKNMVEAYAIPAVGASGA 164
Query: 136 VFGWMTILSVKQPSSKLDLFGFLSLPIS---FAP-------FESLIFTSIIVPQASFLGH 185
++G + + P ++L LF L +PI F P F + SI + H
Sbjct: 165 IYGILVAFGMMFPEARLMLF-LLPIPIKAKYFIPILVGIDLFSGVTGFSIFGGNVAHFAH 223
Query: 186 LSGIIVGYAIAW 197
+ G ++G+ I W
Sbjct: 224 VGGALIGFIIMW 235
>gi|282890177|ref|ZP_06298707.1| hypothetical protein pah_c014o028 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338174300|ref|YP_004651110.1| hypothetical protein PUV_03060 [Parachlamydia acanthamoebae UV-7]
gi|281499834|gb|EFB42123.1| hypothetical protein pah_c014o028 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336478658|emb|CCB85256.1| putative uncharacterized protein [Parachlamydia acanthamoebae UV-7]
Length = 393
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 36/191 (18%)
Query: 20 GICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV 79
G+ I + Q + + +E G WR+ T A H + HL FNM +W + +
Sbjct: 209 GVYDQIVLHFQHPDTSWEFKAPMFEKIKQGEIWRVFTPALLHSDLFHLFFNM--IWLIVI 266
Query: 80 VEQLGDVGLGTAYYLQYTLVLVV--------LSGLLVLGIYHLLIQRFKLEYFRRVTAV- 130
+Q+ + +G Y+ + L+ V +SG LG +L + R+ A
Sbjct: 267 GKQI-EQRIGKGKYILFILLTGVFSNTAQYLMSGSNFLGFSGILCAMIAFIWVRQRHAAW 325
Query: 131 -GYSC-------VVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASF 182
GY ++F MT+L ++ ISFA FE + T+ I P +
Sbjct: 326 EGYQVQRATLGFILFFIMTMLGIQL--------------ISFA-FEVIQHTA-ISPGIAN 369
Query: 183 LGHLSGIIVGY 193
HLSG ++GY
Sbjct: 370 TAHLSGALLGY 380
>gi|409356388|ref|ZP_11234775.1| putative membrane-bound rhomboid protease [Dietzia alimentaria 72]
Length = 244
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR++TSAF H +HL+ NM LW LG+ +E+ +G A YL LV + + V
Sbjct: 68 WRLLTSAFQHFGPMHLLLNMYMLWLLGIGIER----SVGHARYLAMYLVSALGGSVAV-- 121
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFG 156
+ + + G S +FG M ++ + ++D+ G
Sbjct: 122 ----------MFFSQNALTAGASGAIFGLMGAYAIVAMTMRVDVRG 157
>gi|196003924|ref|XP_002111829.1| hypothetical protein TRIADDRAFT_55255 [Trichoplax adhaerens]
gi|190585728|gb|EDV25796.1| hypothetical protein TRIADDRAFT_55255 [Trichoplax adhaerens]
Length = 327
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 44 ETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVL 103
G ++TS FSH HL NM LW+ + D+ ++ Y V
Sbjct: 176 NNPASGRSITLLTSTFSHFDWWHLGMNMFVLWNFAPLA--CDILGKEQFFATYISAGVFA 233
Query: 104 SGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL--FGFLSLP 161
S L +YHL I+ RV +G S + G + ++ +K+P ++L + F S P
Sbjct: 234 S--LGQNLYHLAIRS------TRVFGLGASGALMGTLAVICLKRPDTQLSIIFLPFFSFP 285
Query: 162 IS 163
I+
Sbjct: 286 IT 287
>gi|392546320|ref|ZP_10293457.1| GlpG protein [Pseudoalteromonas rubra ATCC 29570]
Length = 273
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 27/151 (17%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVL 109
WR IT AF H +LHLVFN+S LG + +LG+ L T + V LL
Sbjct: 133 WRWITPAFLHFGLLHLVFNLSWWIYLGNMIERRLGNWVLWTVF---------VAGALLSN 183
Query: 110 GIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSK----LDLFGFLSLPISFA 165
+ +LL F ++ V Y+ + F W I SVK P S + GF+ +
Sbjct: 184 WMQYLLAD----ANFGGLSGVVYALLGFCW--IHSVKHPQSPPLIGTPVVGFMLI----- 232
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
+ L FT ++ + HL G++ G ++A
Sbjct: 233 -WMVLGFTDVLFVNMANWAHLFGLLAGMSVA 262
>gi|385651543|ref|ZP_10046096.1| rhomboid family membrane protein [Leucobacter chromiiresistens JG
31]
Length = 308
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 31/201 (15%)
Query: 10 MEKPATSCIIGICSVIWFYIQKKNIGYSHVGLS--------YETAVDGHHWRIITSAFSH 61
++ P T I+ +C+V+ F Q + + G++ Y WR++T+ F+H
Sbjct: 83 LDAPVTYGIMLLCAVV-FVAQWLSATFGGNGVTAALWYAPLYSMPGAFEPWRLLTAMFTH 141
Query: 62 ISV--LHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR 118
LH++FN+ ALW G +EQ +G A + VL + +G V G +++
Sbjct: 142 SPTFFLHILFNLYALWLFGRNLEQ----AIGRAAF----AVLFLFAG--VGGSLGVMMWA 191
Query: 119 FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVP 178
+ V VG S +FG + V +++ ++ S A ++ F ++P
Sbjct: 192 YVDPQALVVPTVGASGAIFGVLAATLVAMRAARANI-------TSLAVLIAINFAIGLIP 244
Query: 179 QA--SFLGHLSGIIVGYAIAW 197
A S+ HL G+IVG A W
Sbjct: 245 GAAISWQAHLGGLIVGAATMW 265
>gi|365847085|ref|ZP_09387576.1| rhomboid protease GlpG [Yokenella regensburgei ATCC 43003]
gi|364572901|gb|EHM50430.1| rhomboid protease GlpG [Yokenella regensburgei ATCC 43003]
Length = 276
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 23/144 (15%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITSAFSHISVLHLV 68
P T I +C V+ +I +G V L Y+ ++ WR T AF H S++H++
Sbjct: 95 PFTLLIAALCIVV--FIIMNIVGDQPVMLLLAWPYDPSLKFELWRYFTHAFMHFSLMHIL 152
Query: 69 FNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRR 126
FN+ W LG V ++LG L +V+ V+S LL I H +F +F
Sbjct: 153 FNLLWWWYLGGAVEKRLGSGKL---------IVITVISALLSGFIQH----KFGGPWFGG 199
Query: 127 VTAVGYSCVVFGWMTILSVKQPSS 150
++ V Y+ + + W+ + P S
Sbjct: 200 LSGVVYALMGYVWLR--GERDPES 221
>gi|429849740|gb|ELA25087.1| rhomboid protein 2 [Colletotrichum gloeosporioides Nara gc5]
Length = 266
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 74/148 (50%), Gaps = 10/148 (6%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
+R+ T F H++ +H++ N++AL L +E+ + GT ++ L + + +
Sbjct: 62 YRMNTYPFVHVNFIHVILNLAALTPL--LERF-EAEFGTLT----SIALFIGPLSTIPAV 114
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL-FGFLSLPISFAPFESL 170
++LI+RF + V+ +G S VF + + +++ + L S+P P +
Sbjct: 115 VYVLIERFLFK--GNVSVMGASVWVFLLLGMEAIRTYKTNPYLTIATHSIPTWTTPLILV 172
Query: 171 IFTSIIVPQASFLGHLSGIIVGYAIAWG 198
+ + +VP S LGHL G++VGY G
Sbjct: 173 LVVTALVPGTSLLGHLCGVLVGYLFGLG 200
>gi|74620161|sp|Q874X5.1|RBD2_PODAS RecName: Full=Rhomboid protein 2
gi|27803049|emb|CAD60752.1| unnamed protein product [Podospora anserina]
Length = 289
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQ-YTLVLVVLSGLLVLG 110
+R+ T F H+++ H V N+ AL L +E+ + GT L + L + L +G
Sbjct: 62 YRMNTFPFIHLNIFHAVMNILALTPL--MERF-EAEYGTLNCLALFFGPLTTIPAFLYIG 118
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLD-LFGFLSLPISFAPFES 169
+ K + V +G S VF + + +VK + + G S+P P
Sbjct: 119 LE-------KFVFGNNVAVMGASMWVFLLLGVEAVKTYKVNPNFVIGTYSIPTWTTPIGV 171
Query: 170 LIFTSIIVPQASFLGHLSGIIVGYA 194
L +++VP +SF GH +G+++GY
Sbjct: 172 LFAMAVLVPSSSFWGHAAGLVIGYG 196
>gi|297626390|ref|YP_003688153.1| hypothetical protein PFREUD_12010 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922155|emb|CBL56723.1| Hypothetical membrane protein [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 205
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 75/184 (40%), Gaps = 24/184 (13%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHI--SVLHLVFN 70
P T II IC V+W Q G++ + + WR+ITSAF+H +H+ N
Sbjct: 2 PVTYTIIAICVVVWL-CQLVVPGFNRDIILTTWSWQSQPWRLITSAFAHSVSGFMHIAGN 60
Query: 71 MSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVT 128
M LW LG + +G Y L Y L + S L +L F
Sbjct: 61 MLMLWLLGRAIEPAIGR----RDYVLSYLLSALGGSALFIL---------FAALSGTHSA 107
Query: 129 AVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSG 188
VG S VFG +L L G + I +L+F +VP ++ GHL G
Sbjct: 108 VVGASAAVFGLFGLLV-----GLYKLAGIRNTGIWVLLGINLVF-DFVVPGIAWQGHLGG 161
Query: 189 IIVG 192
++G
Sbjct: 162 FLIG 165
>gi|110799144|ref|YP_696141.1| rhomboid family protein [Clostridium perfringens ATCC 13124]
gi|168206356|ref|ZP_02632361.1| rhomboid family protein [Clostridium perfringens E str. JGS1987]
gi|169347261|ref|ZP_02866200.1| rhomboid family protein [Clostridium perfringens C str. JGS1495]
gi|110673791|gb|ABG82778.1| rhomboid family protein [Clostridium perfringens ATCC 13124]
gi|169296657|gb|EDS78788.1| rhomboid family protein [Clostridium perfringens C str. JGS1495]
gi|170662212|gb|EDT14895.1| rhomboid family protein [Clostridium perfringens E str. JGS1987]
Length = 342
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 20/105 (19%)
Query: 39 VGLSYETAV--DGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQ 95
+G + A+ G ++R++TS F H ++HL+FNM AL+ LG +E++ Y +
Sbjct: 189 MGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERI--------YGAK 240
Query: 96 YTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM 140
L + +SG +V I+ L YF V VG S +FG +
Sbjct: 241 KYLAIYFVSG-IVASIFSL--------YFSPVMGVGASGAIFGLL 276
>gi|334126008|ref|ZP_08499990.1| rhomboid protease GlpG [Enterobacter hormaechei ATCC 49162]
gi|333386037|gb|EGK57258.1| rhomboid protease GlpG [Enterobacter hormaechei ATCC 49162]
Length = 276
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 19/152 (12%)
Query: 4 PLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLS----YETAVDGHHWRIITSAF 59
P + E+ ++ + + I +I +G V ++ Y+ ++ WR T A
Sbjct: 84 PFLATLRERAGPFTLLLMAACIIVFIIMSVVGDQSVMIALAWPYDPSLQFDVWRYFTHAL 143
Query: 60 SHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR 118
H SV+H++FN+ W L G+VE+ LG+ + TL+ +LSG + +
Sbjct: 144 MHFSVMHILFNLLWWWYLGGIVEKR----LGSGKLIVITLISALLSGYVQ--------HK 191
Query: 119 FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
F +F ++ V Y+ + + W+ + P S
Sbjct: 192 FSGPWFGGLSGVVYALMGYAWLR--GERDPES 221
>gi|157692984|ref|YP_001487446.1| peptidase [Bacillus pumilus SAFR-032]
gi|157681742|gb|ABV62886.1| S54 family peptidase [Bacillus pumilus SAFR-032]
Length = 512
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVV 80
++G WR++T F HI + HL+FN ALWS+G
Sbjct: 223 LEGEWWRLMTPMFLHIGLTHLLFNTFALWSVGAA 256
>gi|399027000|ref|ZP_10728638.1| putative membrane protein [Flavobacterium sp. CF136]
gi|398075764|gb|EJL66870.1| putative membrane protein [Flavobacterium sp. CF136]
Length = 249
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 81/213 (38%), Gaps = 52/213 (24%)
Query: 34 IGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLG-------- 84
+ Y + L + W+ IT F H H+ FNM AL+S G +E
Sbjct: 27 VSYEYFALFFPQNPGFQIWQPITHMFMHGGFAHIAFNMFALYSFGSTLEHFWGGKKFLFF 86
Query: 85 --DVGLGTA--------YYLQYTLVLVVLSGLLVLGIYHLL-----------------IQ 117
GLG A Y+ Q L ++ SGL I +L Q
Sbjct: 87 YISCGLGAALVNFAVNYYFYQDGLHILESSGLNRTDILQILSEGKIDSRWQDILSVSQYQ 146
Query: 118 RFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS---FAPFESLIFTS 174
RF YF T VG S ++G + + P+++L + F+ +PI F P L+F
Sbjct: 147 RFTGAYFG--TVVGASGAIYGLLVAFTFMFPNAELGIM-FIPIPIKAKYFVPIYMLLFDG 203
Query: 175 II-VPQASFLG---------HLSGIIVGYAIAW 197
+ S +G H+ G + G+ I W
Sbjct: 204 FFGIFGNSLMGIESGIAHYAHIGGALFGFLIMW 236
>gi|422874373|ref|ZP_16920858.1| rhomboid family protein [Clostridium perfringens F262]
gi|380304681|gb|EIA16968.1| rhomboid family protein [Clostridium perfringens F262]
Length = 342
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 20/105 (19%)
Query: 39 VGLSYETAV--DGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQ 95
+G + A+ G ++R++TS F H ++HL+FNM AL+ LG +E++ G YL
Sbjct: 189 MGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERI----YGAKKYLA 244
Query: 96 YTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM 140
V +++ + L YF V VG S +FG +
Sbjct: 245 IYFVSGIVASIFSL-------------YFSPVMGVGASGAIFGLL 276
>gi|409124087|ref|ZP_11223482.1| rhomboid family protein [Gillisia sp. CBA3202]
Length = 247
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 18/145 (12%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W+I+T F H +H++FNM ALW+ G +EQ+ LG + + S +
Sbjct: 46 WQIVTHMFMHGGFMHILFNMYALWAFGSPIEQM----LG-----KNKFIFFYFSCGIGAA 96
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESL 170
I H L+ F +E GY+ +V M + ++Q + +S ES+
Sbjct: 97 IIHSLVNYFHVE-------SGYNALVNAGMNPMDIQQLLETGQYNTSILGSVSKDTLESM 149
Query: 171 IFTSIIVPQASFLGHLSGIIVGYAI 195
FT+ P G + G++V + +
Sbjct: 150 -FTAYNTPAVGASGAIYGVLVAFGM 173
>gi|404260618|ref|ZP_10963899.1| hypothetical protein GONAM_52_00550 [Gordonia namibiensis NBRC
108229]
gi|403400926|dbj|GAC02309.1| hypothetical protein GONAM_52_00550 [Gordonia namibiensis NBRC
108229]
Length = 241
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 12 KP-ATSCIIGICSVIWFY--IQKKNIG-------YSHVGLSYETAVDGHHWRIITSAFSH 61
KP T +IGI +I+ +Q + G +S L G +WR++TS F H
Sbjct: 13 KPYVTYTLIGINILIFLLCAVQAGSFGDPGAATIFSSGDLLKSDVAAGEYWRLLTSGFLH 72
Query: 62 ISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLV 99
SV+H+ NM +L+ LG +L LG + YL L+
Sbjct: 73 FSVMHVAVNMLSLYILGRDLEL---ALGMSRYLAVYLI 107
>gi|425768476|gb|EKV06997.1| Rhomboid protein 2 [Penicillium digitatum PHI26]
gi|425775813|gb|EKV14064.1| Rhomboid protein 2 [Penicillium digitatum Pd1]
Length = 1222
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 12/152 (7%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQL-GDVGLGTAYYLQYTLVLVVLSGLL 107
G +R+ T H H FN A+ L +E+ + G TA L + V +GL
Sbjct: 63 GTMYRLNTYPIIHTGFFHAFFNAVAVTPL--LERFEAEHGTLTAIALFIGPLSTVPAGL- 119
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL-FGFLSLPISFAP 166
++L+++F L R + VG S F + ++K S + G +P +P
Sbjct: 120 -----YILVEKFVLH--RNTSVVGASIWAFLLLGSEAIKTYKSHPNFSLGPYKIPTWTSP 172
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
+ SI++ SFLGHL I+VGY + G
Sbjct: 173 LFGCVVVSILISNVSFLGHLCAILVGYLLGLG 204
>gi|363540224|ref|YP_004894693.1| mg642 gene product [Megavirus chiliensis]
gi|448825630|ref|YP_007418561.1| putative rhomboid protein [Megavirus lba]
gi|350611389|gb|AEQ32833.1| putative rhomboid protein [Megavirus chiliensis]
gi|425701565|gb|AFX92727.1| putative rhomboid protein [Megavirus courdo11]
gi|444236815|gb|AGD92585.1| putative rhomboid protein [Megavirus lba]
Length = 163
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 28/153 (18%)
Query: 43 YETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQL-GDVGLGTAYYLQYTLVLV 101
Y+T+ + ++ + T + H ++ HL+ N +L+ L +E L G A ++ +
Sbjct: 23 YDTSNELVNYSLRT--YYHANIEHLIANSISLYYLSFLEDLLGHTQFAIA------IIFI 74
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI--LSVKQPSSKLDLFGFLS 159
L ++L I H ++ R+V VG+S V+FG + I S+ Q + + + G +
Sbjct: 75 WLVSSMILYIIHAIMPS------RKVYTVGFSGVIFGLIVIYYFSLNQ-NPGITMTGLI- 126
Query: 160 LPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
IS P ++VP SF GHLSGII G
Sbjct: 127 --ISILP-------QLVVPGISFEGHLSGIIAG 150
>gi|301122523|ref|XP_002908988.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262099750|gb|EEY57802.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 269
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 25/189 (13%)
Query: 11 EKPATSCIIGICSVIWFYIQKKNIGYSHVGLSY-----ETAVDGHHWRIITSAFSHISVL 65
+ P T ++GI ++ ++Q K + + LSY + A + +I + F H L
Sbjct: 41 KPPVTLALMGIMYLL--HVQAKRM--PSLLLSYALCPGKVAANKEIGAVILAPFIHSEEL 96
Query: 66 HLVFNMSALWSLGVVE-QLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYF 124
+L +S LW +E +LG +G + + L+V+S LL++ H++ E F
Sbjct: 97 YL---LSFLWKGYKLEGRLGSIG-----FCILLVYLIVVSQLLIVFGAHMISMGATQECF 148
Query: 125 RRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLG 184
G+S V+ IL+V P+ L+ F +P +A + L+ T ++VP+ L
Sbjct: 149 -----TGFSGVLTAMKVILNVNSPTFT-KLYSF-KIPTKYAAWLELLITYLLVPKLPLLA 201
Query: 185 HLSGIIVGY 193
+G++ GY
Sbjct: 202 QAAGLVAGY 210
>gi|254583095|ref|XP_002499279.1| ZYRO0E08140p [Zygosaccharomyces rouxii]
gi|238942853|emb|CAR31024.1| ZYRO0E08140p [Zygosaccharomyces rouxii]
Length = 269
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 30/173 (17%)
Query: 53 RIITSAFSHISVLHLVFNM-SALWSLGVVE-QLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
R+ H+S LHL FN+ S + L + E Q G V G A L + +GLL
Sbjct: 54 RLSNYPLIHLSWLHLFFNLFSLMGPLNLFESQHGTVYTGVALNLT-----AIFAGLLYCV 108
Query: 111 IYHLLIQRFKLE-----YFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165
+ LL + +F T +GY F W S+ P +++ L P + +
Sbjct: 109 VGKLLYPEESVAGASGWFF---TLIGY----FSWKA--SLANPRTQV-LQTPYHFPTALS 158
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNN--YWALSMLGWIV 216
P L+ ++I+P ASF GHLSG+ +GY I G N + LS GW++
Sbjct: 159 PLILLLLITLIIPNASFWGHLSGLTIGYLI------GANEKAFSKLSPPGWLI 205
>gi|443894789|dbj|GAC72136.1| integral membrane protease of the rhomboid family [Pseudozyma
antarctica T-34]
Length = 406
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 22/156 (14%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSAL--WSLGVVEQLGDVGLGTAYYLQYTLVLVV-LS 104
+G W ++TS FSH + +HL+FNM L S VV G T+ LV+
Sbjct: 248 EGRWWTLLTSCFSHEAPMHLLFNMVTLGFMSPPVVALTGP-----------TMFLVLYCG 296
Query: 105 GLLVLGIYHLLIQR-FKLEYFRRVTAV--GYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
G ++ + ++ +R F+ E RR G S V+ M+ + QP ++ LF L LP
Sbjct: 297 GGIISSVVSMVGKRVFETEEQRRRRPFSHGASGSVYAIMSTFACVQPRAQFLLFFVLPLP 356
Query: 162 ---ISFAPFESLIFTSIIVP--QASFLGHLSGIIVG 192
F + +++ P + GH+ G++ G
Sbjct: 357 AWACVSGIFAWDVAQAVLNPGQRTDSAGHIGGVMAG 392
>gi|343928757|ref|ZP_08768202.1| hypothetical protein GOALK_120_01840 [Gordonia alkanivorans NBRC
16433]
gi|343761506|dbj|GAA15128.1| hypothetical protein GOALK_120_01840 [Gordonia alkanivorans NBRC
16433]
Length = 238
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLV 99
G +WR++TS F H SV+H+ NM +L+ LG +L LG + YL L+
Sbjct: 57 GEYWRLLTSGFLHFSVMHVAVNMLSLYILGRDLEL---ALGMSRYLAVYLI 104
>gi|93006714|ref|YP_581151.1| rhomboid-like protein [Psychrobacter cryohalolentis K5]
gi|92394392|gb|ABE75667.1| Rhomboid-like protein [Psychrobacter cryohalolentis K5]
Length = 348
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
+D WR+++SAF HI ++HL+FN A++ G Q+ + G+A +L L+ + L
Sbjct: 54 MDNEPWRLVSSAFLHIGLMHLLFNGFAMYFFG---QIAEPMFGSAKFLALFLLAAIGGNL 110
Query: 107 L 107
L
Sbjct: 111 L 111
>gi|168214465|ref|ZP_02640090.1| rhomboid family protein [Clostridium perfringens CPE str. F4969]
gi|168216839|ref|ZP_02642464.1| rhomboid family protein [Clostridium perfringens NCTC 8239]
gi|422346116|ref|ZP_16427030.1| hypothetical protein HMPREF9476_01103 [Clostridium perfringens
WAL-14572]
gi|170714094|gb|EDT26276.1| rhomboid family protein [Clostridium perfringens CPE str. F4969]
gi|182381088|gb|EDT78567.1| rhomboid family protein [Clostridium perfringens NCTC 8239]
gi|373226738|gb|EHP49060.1| hypothetical protein HMPREF9476_01103 [Clostridium perfringens
WAL-14572]
Length = 342
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 20/105 (19%)
Query: 39 VGLSYETAV--DGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQ 95
+G + A+ G ++R++TS F H ++HL+FNM AL+ LG +E++ Y +
Sbjct: 189 MGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERI--------YGAK 240
Query: 96 YTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM 140
L + +SG +V I+ L YF V VG S +FG +
Sbjct: 241 KYLAIYFVSG-IVASIFSL--------YFSPVMGVGASGAIFGLL 276
>gi|281421497|ref|ZP_06252496.1| rhomboid family protein [Prevotella copri DSM 18205]
gi|281404569|gb|EFB35249.1| rhomboid family protein [Prevotella copri DSM 18205]
Length = 312
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 100/250 (40%), Gaps = 32/250 (12%)
Query: 40 GLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTL 98
GL + A D H ++++T F H H++FNM ALW G VVE++ G +L Y +
Sbjct: 40 GLHFFLASDFHIYQLVTYMFMHGGFQHILFNMFALWMFGCVVERV----WGPKKFLFYYI 95
Query: 99 VLVVLSGLLVLGIYHLLI---------------QRFKLE-YFRRVTAVGYSCVVFGWMTI 142
V V +GL ++ R +E Y T VG S ++ +
Sbjct: 96 VCGVGAGLFQEAAQYITYVAKDMAAYDYVSVNGARITMEQYLNLWTTVGASGAIYAILLA 155
Query: 143 LSVKQPSSKLDLFGFLSLPIS-------FAPFESLIFTSIIVPQASFLGHLSGIIVGYAI 195
+ P+ +L +F L +PI +A E + S+ + + HL G++ G+ +
Sbjct: 156 FGMIYPNERLFIFP-LPVPIKAKFFVIGYAVIELVSTFSLSDDGVAHIAHLGGMVFGFFL 214
Query: 196 A--WGLIHGMNNYWALSMLGWIVLVFVYSLK-RSGTYDFNFLEIESVTDPSLPSVRFIGN 252
W G Y + S + L ++ K R+G F + + ES N
Sbjct: 215 IRYWRKQIGNGYYQSNSADAFDKLKGMFGGKRRAGRTHFTYTKNESYNQTYEQDAECKTN 274
Query: 253 GRTLQMSAIP 262
+ + I
Sbjct: 275 EKVVSQEEID 284
>gi|168210042|ref|ZP_02635667.1| rhomboid family protein [Clostridium perfringens B str. ATCC 3626]
gi|170711841|gb|EDT24023.1| rhomboid family protein [Clostridium perfringens B str. ATCC 3626]
Length = 342
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 20/105 (19%)
Query: 39 VGLSYETAV--DGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQ 95
+G + A+ G ++R++TS F H ++HL+FNM AL+ LG +E++ Y +
Sbjct: 189 MGAKHNNAIIFHGEYYRLVTSMFLHGGIVHLLFNMYALYILGDFIERI--------YGAK 240
Query: 96 YTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM 140
L + +SG +V I+ L YF V VG S +FG +
Sbjct: 241 KYLAIYFVSG-IVASIFSL--------YFSPVMGVGASGAIFGLL 276
>gi|170780474|ref|YP_001708806.1| rhomboid family membrane protein [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155042|emb|CAQ00138.1| putative rhomboid family membrane protein [Clavibacter
michiganensis subsp. sepedonicus]
Length = 287
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 35/193 (18%)
Query: 18 IIGICSVIWFYIQKKNIGYSHVGLS------YETAVDGHH--WRIITSAFSH--ISVLHL 67
I+ +C+V+W +Q + +V S Y + G + WR++TSAF+H S+LH+
Sbjct: 79 IMAVCAVVWI-LQVLPVVGDYVTTSLWFAPVYGSVASGDYEPWRMLTSAFTHSPSSILHI 137
Query: 68 VFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRR 126
VFNM +++ G V+E + LG A +L L+ + L V I + + +
Sbjct: 138 VFNMLSVFVFGRVLEPM----LGRARFLALFLISALGGSLAVEVIGSAMGEPLQ------ 187
Query: 127 VTAVGYSCVVFGWMT---ILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
VG S +FG M +L+ K + L G +++ + +V S+
Sbjct: 188 -AVVGASGAIFGLMGGYFVLARKLGGNVGPLLGIIAIN---------LLLGFVVQGVSWQ 237
Query: 184 GHLSGIIVGYAIA 196
H+ G++ G +A
Sbjct: 238 AHVGGLVTGALVA 250
>gi|399526757|ref|ZP_10766509.1| peptidase, S54 family [Actinomyces sp. ICM39]
gi|398362686|gb|EJN46363.1| peptidase, S54 family [Actinomyces sp. ICM39]
Length = 290
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
H W I+T AF H +LH++FNM +L+ +G +E + ++ T+ LV G
Sbjct: 108 AHPWTILTGAFLHGGLLHILFNMLSLYWVGRAIEPV------MGWWRFLTVYLVSALGGS 161
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
I LIQ ++ V+ VG S VFG + V Q D L+L
Sbjct: 162 AFIIAWCLIQPSEIY----VSTVGASAAVFGLFGAVFVLQRLGGSDTTAILTL------L 211
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH-----------GMNNYWALSMLGWI 215
+ +V S+ GH+ G I G A W L+ N AL+ LG I
Sbjct: 212 GVNLVYGFMVSGISWQGHIGGAIAGVAATWVLVRMARPRSGVTEAAQNRRQALAALGMI 270
>gi|386841294|ref|YP_006246352.1| hypothetical protein SHJG_5211 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374101595|gb|AEY90479.1| hypothetical protein SHJG_5211 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
Length = 281
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 21/170 (12%)
Query: 45 TAVDGHHW-RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVL 103
+ V G W R +TS F+H H+ FNM +LW +G + LG A YL V
Sbjct: 111 SGVAGGEWYRFVTSMFAHQEYWHIGFNMLSLWWIGGPL---EAALGRARYLAVYFV---- 163
Query: 104 SGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
SGL + +LL + ++G S +FG +V D+ ++L +
Sbjct: 164 SGLAGGALTYLLTS-------PQTASLGASGAIFGLFGATAVLMRRLNYDMRPVIALLVI 216
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLG 213
+LIFT V ++ H+ G++ G + ++H AL G
Sbjct: 217 -----NLIFT-FGVGNIAWQAHIGGLVAGVVTGYAMVHAPREKRALVQYG 260
>gi|340399717|ref|YP_004728742.1| hypothetical protein SALIVB_1971 [Streptococcus salivarius CCHSS3]
gi|338743710|emb|CCB94220.1| hypothetical protein SALIVB_1971 [Streptococcus salivarius CCHSS3]
Length = 224
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 28/147 (19%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR++T F HI V H +FNM AL+ +G + EQ+ GT +L L+ V+ L
Sbjct: 59 WRLVTPIFVHIGVEHFLFNMLALYFMGKMAEQI----FGTLRFLGLYLLAGVMGNALT-- 112
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMT---ILSVKQPSSKLDLFG--FLSLPISFA 165
L + V A G S +FG IL S L+ G +L+L +
Sbjct: 113 ----------LLFTPNVIAAGASTSLFGLFAAVVILGYYSHSPLLNQLGRNYLALIVI-- 160
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192
+LIF ++ P GHL G++ G
Sbjct: 161 ---NLIF-NLFTPSVGITGHLGGLVGG 183
>gi|150020441|ref|YP_001305795.1| rhomboid family protein [Thermosipho melanesiensis BI429]
gi|149792962|gb|ABR30410.1| Rhomboid family protein [Thermosipho melanesiensis BI429]
Length = 223
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 76/177 (42%), Gaps = 24/177 (13%)
Query: 27 FYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNMSALWSLG-VVEQLG 84
F+I + + Y G Y V W RI+T+ F H +HLVFNM AL+ LG +VE +
Sbjct: 25 FFIPNEVMLYLLFGAQYGPLVSSGQWYRIVTAMFVHGGFIHLVFNMYALYFLGRIVENV- 83
Query: 85 DVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTIL- 143
GT +L + ++ +L Q F F +VG S +FG + +L
Sbjct: 84 ---YGTDKFLFFYFSTGIIG--------NLATQFFYYNSF----SVGASGAIFGLVGVLF 128
Query: 144 ----SVKQPSSKLDLFGFLSLPISFAP-FESLIFTSIIVPQASFLGHLSGIIVGYAI 195
P + + G LP+ F I S I A G LSG+ +GY I
Sbjct: 129 AAGFRRDTPYTLKPITGTAFLPMILVNIFLGFIPGSNINNAAHLGGFLSGMALGYFI 185
>gi|257459640|ref|ZP_05624749.1| rhomboid family protein [Campylobacter gracilis RM3268]
gi|257443065|gb|EEV18199.1| rhomboid family protein [Campylobacter gracilis RM3268]
Length = 185
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 26/158 (16%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
+G W++++S F H V+HL NM+ L+ G + + G +++TL+ +V G L
Sbjct: 44 EGMPWQLLSSFFMHGGVMHLAMNMAVLYQFGGILERAFGG------IKFTLLYIV--GGL 95
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYS---CVVFGWMTILSVKQPSSKLDLFGFLSLPI-S 163
+ G L+ R+ + V VG S CV+ G + + F+++ I S
Sbjct: 96 LSGALCLIYIRYAMSMGEIVNIVGASGAICVLLGVIAYFDERNAGGI-----FVAILIMS 150
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
FAP ++ ++ H++G +VGY +G+I
Sbjct: 151 FAP-------MLMGVNVAWYAHIAGFVVGY--GFGMIQ 179
>gi|291005693|ref|ZP_06563666.1| rhomboid-like protein [Saccharopolyspora erythraea NRRL 2338]
Length = 308
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG 78
G WR++TS F HI + HL NM ALW +G
Sbjct: 126 GQWWRLVTSGFLHIGLPHLAMNMIALWVIG 155
>gi|337749843|ref|YP_004644005.1| hypothetical protein KNP414_05611 [Paenibacillus mucilaginosus
KNP414]
gi|336301032|gb|AEI44135.1| hypothetical protein KNP414_05611 [Paenibacillus mucilaginosus
KNP414]
Length = 383
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYS-----HVGLSYETAVD-GHHWRIITSAFSHISVLH 66
P T + GI +W + + G Y +D G +WR IT F HI LH
Sbjct: 197 PVTFALTGINVAVWLLMTAYGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGGLH 256
Query: 67 LVFNMSALWSLG 78
L FN +AL SLG
Sbjct: 257 LWFNSTALLSLG 268
>gi|255536607|ref|YP_003096978.1| Rhomboid family protein [Flavobacteriaceae bacterium 3519-10]
gi|255342803|gb|ACU08916.1| Rhomboid family protein [Flavobacteriaceae bacterium 3519-10]
Length = 243
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 16/91 (17%)
Query: 50 HHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
H W+IIT F H S +H++FNM L+S G V+EQ+ LG Y L+L +SG
Sbjct: 46 HSWQIITHMFMHGSFMHILFNMMTLYSFGPVLEQV----LGEKKY----LLLYFVSG--- 94
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGW 139
LG + L F L F + + S FG+
Sbjct: 95 LGAFFL----FNLWNFVEIEQIKASLQSFGF 121
>gi|284040579|ref|YP_003390509.1| rhomboid family protein [Spirosoma linguale DSM 74]
gi|283819872|gb|ADB41710.1| Rhomboid family protein [Spirosoma linguale DSM 74]
Length = 207
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 14/157 (8%)
Query: 43 YETAVDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDV---GLGTAYYLQYTL 98
Y+ A G ++R+ITS F H HL FNM +L+ G +EQ+ + G G Y + + L
Sbjct: 33 YQVASRGQYYRLITSGFLHADWGHLFFNMLSLYFFGGFIEQVFTMLFEGSGGPYLIGFYL 92
Query: 99 VLVVLSGLLVLGIYHLLIQRFKLEYFR-----RVTAVGYSCVVFGWMTILSVKQPSSKLD 153
V +++S I L R Y V+AV ++ ++F +T + + +
Sbjct: 93 VAILVS-----DIPSFLKHRNDPGYNSLGASGGVSAVIFAAILFRPLTPIYLYFIPIGIP 147
Query: 154 LFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGII 190
F F +L ++++ +ES + A F G L G++
Sbjct: 148 GFIFGALYLAYSYYESRRGAGNVNHDAHFYGALFGVV 184
>gi|379722713|ref|YP_005314844.1| hypothetical protein PM3016_4963 [Paenibacillus mucilaginosus 3016]
gi|378571385|gb|AFC31695.1| hypothetical protein PM3016_4963 [Paenibacillus mucilaginosus 3016]
Length = 383
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYS-----HVGLSYETAVD-GHHWRIITSAFSHISVLH 66
P T + GI +W + + G Y +D G +WR IT F HI LH
Sbjct: 197 PVTFALTGINVAVWLLMTAYGGSDNPETLVRFGAKYNPYIDRGEYWRWITPIFLHIGGLH 256
Query: 67 LVFNMSALWSLG 78
L FN +AL SLG
Sbjct: 257 LWFNSTALLSLG 268
>gi|340351726|ref|ZP_08674629.1| rhomboid family protein [Prevotella pallens ATCC 700821]
gi|339616940|gb|EGQ21575.1| rhomboid family protein [Prevotella pallens ATCC 700821]
Length = 319
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 31/180 (17%)
Query: 39 VGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTL 98
+GL + A D H W+IIT F H S +H++ NM LW G+V + +V G +L Y +
Sbjct: 36 LGLHFFLANDFHLWQIITYMFMHGSFMHILMNMFMLWMFGMV--MENV-WGPKKFLLYYI 92
Query: 99 VLVVLSGLLV------------LGIYHLL---IQRFKLE-YFRRVTAVGYSCVVFGWMTI 142
+ + +GL L Y L + R +E Y T VG S V+G +
Sbjct: 93 ITGIGAGLCQELAQYANYMAEGLNRYQYLATEMGRIPMENYLNLWTTVGASGAVYGVLLA 152
Query: 143 LSVKQPSSKLDLFGFLSLPISFA---------PFESLIFTSIIVPQASFLGHLSGIIVGY 193
+ P+ ++ + + +PI E S + L HL G++ G+
Sbjct: 153 FGLTFPNERMFI---IPIPIPLKAKWIIMGSIAMELFSAMSTTNDGVAHLAHLGGMLFGF 209
>gi|21222264|ref|NP_628043.1| hypothetical protein SCO3855 [Streptomyces coelicolor A3(2)]
gi|289770532|ref|ZP_06529910.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|5102807|emb|CAB45222.1| putative membrane protein [Streptomyces coelicolor A3(2)]
gi|289700731|gb|EFD68160.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 297
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 20/170 (11%)
Query: 44 ETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVL 103
E +G +R++T+ F+H + H+ FNM +LW LG + LG A YL LV
Sbjct: 127 EGVAEGEWYRLVTTMFTHEEIWHIGFNMISLWFLGGPLE---AALGRARYLALYLV---- 179
Query: 104 SGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
SGL + +LL +G S +FG + D+ P+
Sbjct: 180 SGLAGSVLAYLLASPT-------TATLGASGAIFGLFGATAALVRRLNADM-----RPVV 227
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLG 213
SLIFT S+ H+ G++ G I + ++H L G
Sbjct: 228 ILLVISLIFT-FTRGNISWQAHVGGLVAGAVIGYAMLHAPRERRTLVQYG 276
>gi|167752897|ref|ZP_02425024.1| hypothetical protein ALIPUT_01159 [Alistipes putredinis DSM 17216]
gi|167659966|gb|EDS04096.1| peptidase, S54 family [Alistipes putredinis DSM 17216]
Length = 213
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 14/111 (12%)
Query: 50 HHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVL 109
H ++++T F H HL FNM ALW G + + LG+ +L Y +V V +G+L
Sbjct: 52 HSYQLVTYMFLHGGFSHLFFNMFALWMFG---RTLEYELGSKRFLTYYMVCGVGAGVL-- 106
Query: 110 GIYHLLIQRFKLEYFR------RVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
LL+ + Y V VG S VFG + V P++ + L
Sbjct: 107 ---QLLVGWLEYRYGNVGMMALMVPTVGASGAVFGLLLAFGVMHPNAVIML 154
>gi|167005604|ref|ZP_02271362.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni 81-176]
gi|415745356|ref|ZP_11474812.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni 327]
gi|315932131|gb|EFV11074.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni 327]
Length = 157
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 23/153 (15%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
+G +W++++S F H ++ HL+ NM L+ G + + Y + + G L
Sbjct: 18 NGAYWQLLSSMFLHGNLTHLILNMIVLFQFGRILE--------TYLGALRFIFIYFIGGL 69
Query: 108 VLGIYHLLIQRFKLEYF-RRVTAVGYS---CVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
+ + + F +YF + +G S CV+ G+ +L K + L + L +S
Sbjct: 70 LCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVLD-KNSTKGLIV---AILLMS 125
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
FAP ++ ++ GH+ G + GY +A
Sbjct: 126 FAPL-------LMGVNVAWYGHIFGFMCGYILA 151
>gi|134096653|ref|YP_001102314.1| rhomboid-like protein [Saccharopolyspora erythraea NRRL 2338]
gi|133909276|emb|CAL99388.1| rhomboid-like protein [Saccharopolyspora erythraea NRRL 2338]
Length = 259
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG 78
G WR++TS F HI + HL NM ALW +G
Sbjct: 77 GQWWRLVTSGFLHIGLPHLAMNMIALWVIG 106
>gi|414156375|ref|ZP_11412677.1| hypothetical protein HMPREF9186_01097 [Streptococcus sp. F0442]
gi|410870022|gb|EKS17981.1| hypothetical protein HMPREF9186_01097 [Streptococcus sp. F0442]
Length = 225
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 23/149 (15%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
WRI+T+ F HI + H V NM L+ LG +L + G+ +L L +LSG++
Sbjct: 59 WRIVTATFVHIGLEHFVLNMITLYYLG---RLAEDLFGSKAFLA----LYLLSGMMG--- 108
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
++ + F + V A G S +FG + + + LS + SLI
Sbjct: 109 -NVFVAIFTPD----VIAAGASTALFGLFGTIGALRFIVQSPYIRHLS-----QSYTSLI 158
Query: 172 FTSII---VPQASFLGHLSGIIVGYAIAW 197
++I +P S GH+ G++ G +A+
Sbjct: 159 VVNLIFSFMPDISMAGHIGGLVAGVMLAY 187
>gi|353235265|emb|CCA67281.1| hypothetical protein PIIN_01114 [Piriformospora indica DSM 11827]
Length = 203
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 32/160 (20%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
G W ++TSAF+H S +HL+ N LW L Q Y Y+ + V L+G +
Sbjct: 54 QGRIWTLVTSAFAHHSTIHLLMNTLGLWRLRPDAQ---------YLGSYSFLTVYLAGAV 104
Query: 108 VLGIYHLLIQRFKLEYFRR---VTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
Y+ + V +G S + + ++ P S + LFG +P+S
Sbjct: 105 G--------SSLASAYWNQNHPVHGMGASGAMNAVKSFMACMTPRSSVTLFG---IPMSL 153
Query: 165 APFESLIF---------TSIIVPQASFLGHLSGIIVGYAI 195
E+ IF S + F GH+ G + G A+
Sbjct: 154 WVAEAGIFLYDLYRVESGSRRLTSIGFEGHIGGTMTGIAL 193
>gi|330996515|ref|ZP_08320397.1| peptidase, S54 family [Paraprevotella xylaniphila YIT 11841]
gi|329573071|gb|EGG54690.1| peptidase, S54 family [Paraprevotella xylaniphila YIT 11841]
Length = 306
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 29/178 (16%)
Query: 39 VGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTL 98
+GL + A D ++ T F H V H++FNM A+W G V + G+ +L Y +
Sbjct: 36 LGLHFFLAPDFSFYQFFTYMFMHGGVTHILFNMFAVWMFGRVME---SYWGSRRFLLYYV 92
Query: 99 VLVVLSGLLV------------LGIYHLLIQRFKL----EYFRRVTAVGYSCVVFGWMTI 142
V + +GL+ LG Y + + + +Y R T +G S V+G +
Sbjct: 93 VCGLGAGLVQEGVQYVQYLWQGLGAYDTVNIGYTVISMGDYLNRWTTIGASGAVYGILLA 152
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA--------SFLGHLSGIIVG 192
+ P+ +L +F L +PI A F + + +I + A + HL G+I G
Sbjct: 153 FGMSFPNERLFIFP-LPVPIK-AKFFVIGYAAIELLSALGNSGDGVAHFAHLGGMIFG 208
>gi|311071132|ref|YP_003976055.1| hypothetical protein BATR1942_21045 [Bacillus atrophaeus 1942]
gi|419823027|ref|ZP_14346590.1| hypothetical protein UY9_16511 [Bacillus atrophaeus C89]
gi|310871649|gb|ADP35124.1| hypothetical protein BATR1942_21045 [Bacillus atrophaeus 1942]
gi|388472834|gb|EIM09594.1| hypothetical protein UY9_16511 [Bacillus atrophaeus C89]
Length = 199
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 13 PATSCIIGICSVIWFYIQ---KKNIGYSHVGLSYETAV-DGHHWRIITSAFSHISVLHLV 68
PA +CI+ I SV+W + + I + Y V +G WR+IT F H HL+
Sbjct: 16 PAVACILAIQSVLWIFCKLPIHSVILWGDAVTGYNLGVANGEWWRLITPIFLHAGFAHLL 75
Query: 69 FN-MSALWSLGVVEQLGDVGLGTAYYL 94
FN MS +E+L LG A +L
Sbjct: 76 FNSMSIFLFAPALERL----LGKARFL 98
>gi|383829530|ref|ZP_09984619.1| putative membrane protein [Saccharomonospora xinjiangensis XJ-54]
gi|383462183|gb|EID54273.1| putative membrane protein [Saccharomonospora xinjiangensis XJ-54]
Length = 317
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG 78
WR+ITS F H +LHL NM ALW LG
Sbjct: 142 WRLITSGFLHYGLLHLAMNMLALWVLG 168
>gi|357639493|ref|ZP_09137366.1| peptidase, S54 family [Streptococcus urinalis 2285-97]
gi|418417068|ref|ZP_12990266.1| hypothetical protein HMPREF9318_01014 [Streptococcus urinalis
FB127-CNA-2]
gi|357587947|gb|EHJ57355.1| peptidase, S54 family [Streptococcus urinalis 2285-97]
gi|410873124|gb|EKS21060.1| hypothetical protein HMPREF9318_01014 [Streptococcus urinalis
FB127-CNA-2]
Length = 222
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 28/153 (18%)
Query: 50 HHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVL 109
H WR++T F HI + H N+ AL+ +G Q+ + G+ Y+ L+L +L+G+
Sbjct: 56 HIWRLVTPIFVHIGLGHFFLNILALYFVG---QMAEGIWGSPYF----LLLYILAGISG- 107
Query: 110 GIYHLLIQRFKLEYFRRVTAVGYSCVVFGW---MTILSVKQPSSKLDLFG---FLSLPIS 163
F L + V A G S +FG + +++V P + L G F+ + I+
Sbjct: 108 -------NVFTLLFTPDVIAAGASTSLFGLFAAIMMVAVFSPDASLKGLGRDYFMLILIN 160
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
+ +I +P S GH+ G++ G +A
Sbjct: 161 -------LVMNIFMPNVSIAGHIGGLVGGILVA 186
>gi|417003054|ref|ZP_11942140.1| peptidase, S54 family [Anaerococcus prevotii ACS-065-V-Col13]
gi|325478800|gb|EGC81910.1| peptidase, S54 family [Anaerococcus prevotii ACS-065-V-Col13]
Length = 227
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLG 78
DG WRI+++AF HI H++FNM L+++G
Sbjct: 53 DGQWWRILSAAFIHIGFFHIMFNMYFLYNIG 83
>gi|315506838|ref|YP_004085725.1| rhomboid family protein [Micromonospora sp. L5]
gi|315413457|gb|ADU11574.1| Rhomboid family protein [Micromonospora sp. L5]
Length = 298
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 70/173 (40%), Gaps = 20/173 (11%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
DG +R++T+ F H VLHL+ NM ALW LG L+ L + L
Sbjct: 131 DGEWYRLVTAMFLHYGVLHLLLNMWALWVLG-------------RTLEAVLGPLRFLALY 177
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPF 167
+L + + R TA G S VFG + V D + + +
Sbjct: 178 LLAGLGGNVAAYVFTEPNRFTA-GASTAVFGLFAAVFVIMRRLGRDTSAIVPILVI---- 232
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFV 220
+LIFT VP S GHL G++ G +A L + + L + +V V
Sbjct: 233 -NLIFT-FTVPSISVAGHLGGLVAGALVALVLAYAPRSRRTLFQVAGCAIVLV 283
>gi|256389834|ref|YP_003111398.1| rhomboid family protein [Catenulispora acidiphila DSM 44928]
gi|256356060|gb|ACU69557.1| Rhomboid family protein [Catenulispora acidiphila DSM 44928]
Length = 359
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 14/79 (17%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHI-------SVLHLVFNMSALWSL 77
++ + GY +G+++ G +R+ITSAF HI +H++FNM +LW
Sbjct: 115 VYLTMASPPPGYHPIGVAH-----GQWYRMITSAFVHILPNQPPLGPMHILFNMLSLWMF 169
Query: 78 GVV--EQLGDVGLGTAYYL 94
GVV +Q+G V AY L
Sbjct: 170 GVVVEQQIGRVRYLAAYLL 188
>gi|389795854|ref|ZP_10198963.1| hypothetical protein UU9_16426 [Rhodanobacter fulvus Jip2]
gi|388430185|gb|EIL87379.1| hypothetical protein UU9_16426 [Rhodanobacter fulvus Jip2]
Length = 217
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 20/152 (13%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W++++ AF H V H++FNM AL+ GV+E+ G ++ Y V +++ + L
Sbjct: 60 WQLVSYAFMHGGVTHILFNMIALYMFGGVIERT----FGARNFVIYYFVCAIVAAVAQL- 114
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP-------IS 163
+++Q F ++ +G S VFG + + P K+ L FL +P I
Sbjct: 115 ---IVVQWFTHGFY---PTLGASGAVFGLLLAFGMLYPHEKVMLI-FLPVPMPAWLFVIG 167
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAI 195
+A E ++ + + HL G++ GY +
Sbjct: 168 YALVELVMGVTSTQAGVAHFAHLGGMVGGYVL 199
>gi|365964250|ref|YP_004945815.1| membrane spanning protein [Propionibacterium acnes TypeIA2 P.acn17]
gi|365740931|gb|AEW80625.1| membrane spanning protein [Propionibacterium acnes TypeIA2 P.acn17]
Length = 302
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 28/189 (14%)
Query: 15 TSCIIGICSVIWF------YIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSH-ISVLHL 67
T +IGIC ++W + + + VG + WR +TS F H +S+ H+
Sbjct: 91 TWTLIGICFLVWVGEWLSPQVGEAVVLAPRVGFT-------EPWRFVTSMFGHALSIFHI 143
Query: 68 VFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRR 126
FNM ALW+LG +E LG A +L L+ + G L + R L
Sbjct: 144 GFNMYALWALGRSLEPF----LGRARFLAAYLMSGLGGGALFCLMATADGGRAILPNVDD 199
Query: 127 VTAVGYSCVVFGWMTILSVKQP---SSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
VG S +FG +L + Q +S +L+ L++ + L+F S I QA
Sbjct: 200 -GVVGASGAIFGLFGVLLIVQRRLGASTRELWVVLAINAAL-----LLFISGIAWQAHLG 253
Query: 184 GHLSGIIVG 192
G L G++ G
Sbjct: 254 GFLVGMMCG 262
>gi|374609055|ref|ZP_09681852.1| Rhomboid family protein [Mycobacterium tusciae JS617]
gi|373552795|gb|EHP79398.1| Rhomboid family protein [Mycobacterium tusciae JS617]
Length = 282
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 23/182 (12%)
Query: 15 TSCIIGICSVIWFYIQKKNIGYSHVGLSYETAV-DGHHWRIITSAFSHISVLHLVFNMSA 73
T +IGI +V+ F +Q ++ + + AV DG +R++TSAF H V H++FNM
Sbjct: 72 TYVLIGI-NVVMFGLQTVSVDLQRELVLFSPAVADGEWYRLLTSAFLHYGVTHILFNM-- 128
Query: 74 LWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYS 133
W+L VV + LG ++ + +LV + L Q G S
Sbjct: 129 -WALYVVGPPLEAALGRLRFIGLYFTSALGGSVLVYLLSSLGAQ-----------TAGAS 176
Query: 134 CVVFGWMTILSVKQPSSKLD---LFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGII 190
+FG V LD + G ++L ++F L+ + I S+ GH+ G++
Sbjct: 177 GAIFGLFGATFVVGKRLNLDVRWVIGLIALNMAFTFVIPLVSSQNI----SWQGHIGGLV 232
Query: 191 VG 192
G
Sbjct: 233 TG 234
>gi|357060786|ref|ZP_09121550.1| hypothetical protein HMPREF9332_01107 [Alloprevotella rava F0323]
gi|355375619|gb|EHG22902.1| hypothetical protein HMPREF9332_01107 [Alloprevotella rava F0323]
Length = 312
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 21/216 (9%)
Query: 37 SHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQ 95
S +GL + A D + W+ T F H + HL FNM ALW G++E+ +GT +L
Sbjct: 39 SWLGLHFVLADDFYLWQPFTYMFLHGGLSHLFFNMFALWMFGGIIERT----IGTRRFLT 94
Query: 96 YTLVLVVLSGL--LVLGIYHLLIQRFKLEYFRRVTA--VGYSCVVFGWMTILSVKQPSSK 151
Y V + + L V + ++ + F +V + ++ W TI +
Sbjct: 95 YYFVCGLGAALSQEVWQLAQYFVEGMQNYQFAKVNGALIPMGQLLNAWTTIGASGAVYGI 154
Query: 152 LDLFGFLSLPISFAPFESLIFTSIIVP-QASFLGHLSGIIVGYAIAWGLIHGMNNYWALS 210
L FGFL P E ++ +P +A +L + G IV A++ G+ + ++ L
Sbjct: 155 LLAFGFLY------PNERIMLLIPPIPLKAKYL--VMGYIVIEALSLGMSDNIAHFAHLG 206
Query: 211 --MLGWIVLVFVYSLKRSGTYDFNFLEIESVTDPSL 244
+ GW++L++ + + S T +F + + P+L
Sbjct: 207 GMLFGWLLLLY-WRKRSSRTSNFRGWDNYTPDKPTL 241
>gi|386712717|ref|YP_006179039.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
gi|384072272|emb|CCG43762.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
Length = 256
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 33/196 (16%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAV-----DGHHWRIITSAFSHISVLHL 67
P S ++GI ++W I G++ L + V +G +WR++T F H H
Sbjct: 16 PIVSTLVGIHLLLWILIDFLQFGFALDLLRFGIGVNVLILEGEYWRLVTPIFLHAGFAHA 75
Query: 68 VFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRR 126
+FN +L G +EQ+ LG ++ + + L +V + ++ Y++
Sbjct: 76 LFNSFSLVLFGPALEQI----LG-----KFKFIFMYLFAGIVGNLGTFIVN--PDAYYQH 124
Query: 127 VTAVGYSCVVFG---WMTILS---VKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQA 180
+ A G +FG +M + + Q +S+ I F +F + P
Sbjct: 125 LGASGAIFGIFGVYVFMVLFRKHLIDQANSQ----------IVMVIFILGLFMTFTRPNI 174
Query: 181 SFLGHLSGIIVGYAIA 196
+ LGHL G+I G+AIA
Sbjct: 175 NVLGHLFGLIGGFAIA 190
>gi|359150971|ref|ZP_09183724.1| hypothetical protein StrS4_29826 [Streptomyces sp. S4]
Length = 300
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 20/161 (12%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
G +R++TS F+H LH NM LW LG + LG A YL LV SGL
Sbjct: 135 GEWYRLVTSMFTHQEFLHFASNMLLLWWLGGPLE---AALGRARYLALYLV----SGLAG 187
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE 168
+ +++ + ++G S VFG M V DL P+
Sbjct: 188 SALTYVIAAPGQF-------SLGASGAVFGLMGATVVLMRRLNQDL-----RPVLVLVAL 235
Query: 169 SLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWAL 209
+L+FT ++ P+ S+ H+ G++ G I + ++H AL
Sbjct: 236 NLVFT-VLAPRISWEAHVGGLVAGAIIGYAMVHAPRGRRAL 275
>gi|237711514|ref|ZP_04541995.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|265752939|ref|ZP_06088508.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|345514023|ref|ZP_08793537.1| hypothetical protein BSEG_02055 [Bacteroides dorei 5_1_36/D4]
gi|423230808|ref|ZP_17217212.1| hypothetical protein HMPREF1063_03032 [Bacteroides dorei
CL02T00C15]
gi|423240560|ref|ZP_17221674.1| hypothetical protein HMPREF1065_02297 [Bacteroides dorei
CL03T12C01]
gi|423244519|ref|ZP_17225594.1| hypothetical protein HMPREF1064_01800 [Bacteroides dorei
CL02T12C06]
gi|229435837|gb|EEO45914.1| hypothetical protein BSEG_02055 [Bacteroides dorei 5_1_36/D4]
gi|229454209|gb|EEO59930.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263236125|gb|EEZ21620.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|392630458|gb|EIY24451.1| hypothetical protein HMPREF1063_03032 [Bacteroides dorei
CL02T00C15]
gi|392642093|gb|EIY35865.1| hypothetical protein HMPREF1064_01800 [Bacteroides dorei
CL02T12C06]
gi|392643522|gb|EIY37271.1| hypothetical protein HMPREF1065_02297 [Bacteroides dorei
CL03T12C01]
Length = 225
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 77/188 (40%), Gaps = 48/188 (25%)
Query: 39 VGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYT 97
+GL + A D + ++IT F H H+ FNM ALW G +EQ+ G +L Y
Sbjct: 36 LGLHFFMASDFNPAQLITYMFMHGGFQHIFFNMFALWMFGRTLEQV----WGPKRFLFYY 91
Query: 98 LVLVVLSGLLVLGIYHLLIQRFKL--------------------EYFRRVTAVGYSCVVF 137
+V + +GL+ L+Q + EY +T VG S ++
Sbjct: 92 MVCGIGAGLV-----QELVQYIQYVTELSQYDSVNTGIAVIPMAEYLNLMTTVGASGAIY 146
Query: 138 GWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLG------------H 185
G + + P+S++ +F PI F P ++ F FLG H
Sbjct: 147 GILLAFGMLFPNSQMFVF-----PIPF-PVKAKYFVMGYAALEIFLGLGASTDGVAHFAH 200
Query: 186 LSGIIVGY 193
L G+I G+
Sbjct: 201 LGGMIFGF 208
>gi|319948114|ref|ZP_08022278.1| rhomboid family protein [Dietzia cinnamea P4]
gi|319438225|gb|EFV93181.1| rhomboid family protein [Dietzia cinnamea P4]
Length = 244
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 17/112 (15%)
Query: 46 AVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLS 104
AV WR++TSAF H +HL+ NM LW LG+ +E+ +G A +L LV +
Sbjct: 62 AVRDEWWRLLTSAFQHFGPMHLLLNMYMLWILGLGIER----SIGHARFLGLYLVSALGG 117
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFG 156
+ V+ F + G S +FG M ++ S +LD+ G
Sbjct: 118 SVAVM---------FTSQ---NALTAGASGAIFGLMGAYAIVAMSLRLDVKG 157
>gi|386070828|ref|YP_005985724.1| peptidase, S54 (rhomboid) family protein [Propionibacterium acnes
ATCC 11828]
gi|422389739|ref|ZP_16469836.1| membrane protein rhomboid family protein [Propionibacterium acnes
HL103PA1]
gi|422458096|ref|ZP_16534754.1| peptidase, S54 family protein [Propionibacterium acnes HL050PA2]
gi|422463766|ref|ZP_16540379.1| peptidase, S54 family protein [Propionibacterium acnes HL060PA1]
gi|422466902|ref|ZP_16543464.1| peptidase, S54 family protein [Propionibacterium acnes HL110PA4]
gi|422468642|ref|ZP_16545173.1| peptidase, S54 family protein [Propionibacterium acnes HL110PA3]
gi|422576868|ref|ZP_16652405.1| peptidase, S54 family protein [Propionibacterium acnes HL001PA1]
gi|314922373|gb|EFS86204.1| peptidase, S54 family protein [Propionibacterium acnes HL001PA1]
gi|314982598|gb|EFT26690.1| peptidase, S54 family protein [Propionibacterium acnes HL110PA3]
gi|315091121|gb|EFT63097.1| peptidase, S54 family protein [Propionibacterium acnes HL110PA4]
gi|315094207|gb|EFT66183.1| peptidase, S54 family protein [Propionibacterium acnes HL060PA1]
gi|315104863|gb|EFT76839.1| peptidase, S54 family protein [Propionibacterium acnes HL050PA2]
gi|327329266|gb|EGE71026.1| membrane protein rhomboid family protein [Propionibacterium acnes
HL103PA1]
gi|353455194|gb|AER05713.1| peptidase, S54 (rhomboid) family protein [Propionibacterium acnes
ATCC 11828]
Length = 222
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 15 TSCIIGICSVIWF------YIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSH-ISVLHL 67
T +IGIC ++W + + + VG + WR +TS F H +S+ H+
Sbjct: 11 TWTLIGICFLVWVGEWLSPQVGEAVVLAPRVGFT-------EPWRFVTSMFGHALSIFHI 63
Query: 68 VFNMSALWSLG 78
FNM ALW+LG
Sbjct: 64 GFNMYALWALG 74
>gi|190348169|gb|EDK40578.2| hypothetical protein PGUG_04676 [Meyerozyma guilliermondii ATCC
6260]
Length = 291
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 131 GYSCVVFGWMTILSVKQPSSKLDLFGF---LSLPISFAPFESLIFTSIIVPQASFLGHLS 187
G S + F ++ ++K+ S F + LP ++ F LI T I+VP +S LGHL+
Sbjct: 150 GLSAICFSFLEFYALKEQSYYPIAFQWGDRYRLPTKYSAFVVLIITFILVPNSSLLGHLA 209
Query: 188 GIIVGYAIA 196
GI GY +A
Sbjct: 210 GIGSGYLLA 218
>gi|386345548|ref|YP_006041712.1| hypothetical protein STH8232_2117 [Streptococcus thermophilus JIM
8232]
gi|339279009|emb|CCC20757.1| hypothetical protein STH8232_2117 [Streptococcus thermophilus JIM
8232]
Length = 224
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 28/147 (19%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR+IT F HI V H +FNM L+ +G + EQ+ GT +L L +L+G V+G
Sbjct: 59 WRLITPIFVHIGVEHFLFNMLTLYFMGRMAEQI----FGTLRFLG----LYLLAG--VMG 108
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGW---MTILSVKQPSSKLDLFG--FLSLPISFA 165
F L + V A G S +FG + I+ S L+ G +L+L +
Sbjct: 109 ------NAFTLLFTPNVIAAGASTSLFGLFAAIVIIGYYSHSPLLNQLGRNYLALIVI-- 160
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192
+LIF ++ P GHL G++ G
Sbjct: 161 ---NLIF-NLFTPSVGITGHLGGLVGG 183
>gi|422387122|ref|ZP_16467239.1| membrane protein rhomboid family protein [Propionibacterium acnes
HL096PA2]
gi|422391919|ref|ZP_16471993.1| membrane protein rhomboid family protein [Propionibacterium acnes
HL099PA1]
gi|422394966|ref|ZP_16475007.1| membrane protein rhomboid family protein [Propionibacterium acnes
HL097PA1]
gi|422425090|ref|ZP_16502036.1| peptidase, S54 family protein [Propionibacterium acnes HL043PA1]
gi|422432052|ref|ZP_16508922.1| peptidase, S54 family protein [Propionibacterium acnes HL059PA2]
gi|422434926|ref|ZP_16511784.1| peptidase, S54 family protein [Propionibacterium acnes HL083PA2]
gi|422436817|ref|ZP_16513664.1| peptidase, S54 family protein [Propionibacterium acnes HL092PA1]
gi|422442648|ref|ZP_16519451.1| peptidase, S54 family protein [Propionibacterium acnes HL002PA1]
gi|422446440|ref|ZP_16523185.1| peptidase, S54 family protein [Propionibacterium acnes HL027PA1]
gi|422450210|ref|ZP_16526927.1| peptidase, S54 family protein [Propionibacterium acnes HL030PA2]
gi|422460611|ref|ZP_16537245.1| peptidase, S54 family protein [Propionibacterium acnes HL038PA1]
gi|422474109|ref|ZP_16550579.1| peptidase, S54 family protein [Propionibacterium acnes HL056PA1]
gi|422476590|ref|ZP_16553029.1| peptidase, S54 family protein [Propionibacterium acnes HL007PA1]
gi|422484011|ref|ZP_16560390.1| peptidase, S54 family protein [Propionibacterium acnes HL043PA2]
gi|422491579|ref|ZP_16567890.1| peptidase, S54 family protein [Propionibacterium acnes HL086PA1]
gi|422500248|ref|ZP_16576504.1| peptidase, S54 family protein [Propionibacterium acnes HL063PA2]
gi|422511370|ref|ZP_16587513.1| peptidase, S54 family protein [Propionibacterium acnes HL059PA1]
gi|422515427|ref|ZP_16591539.1| peptidase, S54 family protein [Propionibacterium acnes HL110PA2]
gi|422517995|ref|ZP_16594067.1| peptidase, S54 family protein [Propionibacterium acnes HL074PA1]
gi|422520642|ref|ZP_16596684.1| peptidase, S54 family protein [Propionibacterium acnes HL045PA1]
gi|422523573|ref|ZP_16599585.1| peptidase, S54 family protein [Propionibacterium acnes HL053PA2]
gi|422526136|ref|ZP_16602135.1| peptidase, S54 family protein [Propionibacterium acnes HL083PA1]
gi|422528553|ref|ZP_16604535.1| peptidase, S54 family protein [Propionibacterium acnes HL053PA1]
gi|422531484|ref|ZP_16607432.1| peptidase, S54 family protein [Propionibacterium acnes HL110PA1]
gi|422536010|ref|ZP_16611918.1| peptidase, S54 family protein [Propionibacterium acnes HL078PA1]
gi|422538501|ref|ZP_16614375.1| peptidase, S54 family protein [Propionibacterium acnes HL013PA1]
gi|422541284|ref|ZP_16617142.1| peptidase, S54 family protein [Propionibacterium acnes HL037PA1]
gi|422543833|ref|ZP_16619673.1| peptidase, S54 family protein [Propionibacterium acnes HL082PA1]
gi|422546350|ref|ZP_16622177.1| peptidase, S54 family protein [Propionibacterium acnes HL050PA3]
gi|422550773|ref|ZP_16626570.1| peptidase, S54 family protein [Propionibacterium acnes HL050PA1]
gi|422557543|ref|ZP_16633286.1| peptidase, S54 family protein [Propionibacterium acnes HL025PA2]
gi|422559204|ref|ZP_16634932.1| peptidase, S54 family protein [Propionibacterium acnes HL005PA1]
gi|422562348|ref|ZP_16638026.1| peptidase, S54 family protein [Propionibacterium acnes HL046PA1]
gi|422570674|ref|ZP_16646269.1| peptidase, S54 family protein [Propionibacterium acnes HL067PA1]
gi|422578091|ref|ZP_16653620.1| peptidase, S54 family protein [Propionibacterium acnes HL005PA4]
gi|313765256|gb|EFS36620.1| peptidase, S54 family protein [Propionibacterium acnes HL013PA1]
gi|313772829|gb|EFS38795.1| peptidase, S54 family protein [Propionibacterium acnes HL074PA1]
gi|313793149|gb|EFS41216.1| peptidase, S54 family protein [Propionibacterium acnes HL110PA1]
gi|313802763|gb|EFS43981.1| peptidase, S54 family protein [Propionibacterium acnes HL110PA2]
gi|313810969|gb|EFS48683.1| peptidase, S54 family protein [Propionibacterium acnes HL083PA1]
gi|313815272|gb|EFS52986.1| peptidase, S54 family protein [Propionibacterium acnes HL059PA1]
gi|313828687|gb|EFS66401.1| peptidase, S54 family protein [Propionibacterium acnes HL063PA2]
gi|313831735|gb|EFS69449.1| peptidase, S54 family protein [Propionibacterium acnes HL007PA1]
gi|313834384|gb|EFS72098.1| peptidase, S54 family protein [Propionibacterium acnes HL056PA1]
gi|313840425|gb|EFS78139.1| peptidase, S54 family protein [Propionibacterium acnes HL086PA1]
gi|314916091|gb|EFS79922.1| peptidase, S54 family protein [Propionibacterium acnes HL005PA4]
gi|314917012|gb|EFS80843.1| peptidase, S54 family protein [Propionibacterium acnes HL050PA1]
gi|314921288|gb|EFS85119.1| peptidase, S54 family protein [Propionibacterium acnes HL050PA3]
gi|314931050|gb|EFS94881.1| peptidase, S54 family protein [Propionibacterium acnes HL067PA1]
gi|314954997|gb|EFS99403.1| peptidase, S54 family protein [Propionibacterium acnes HL027PA1]
gi|314959037|gb|EFT03139.1| peptidase, S54 family protein [Propionibacterium acnes HL002PA1]
gi|314964562|gb|EFT08662.1| peptidase, S54 family protein [Propionibacterium acnes HL082PA1]
gi|314969660|gb|EFT13758.1| peptidase, S54 family protein [Propionibacterium acnes HL037PA1]
gi|314974725|gb|EFT18820.1| peptidase, S54 family protein [Propionibacterium acnes HL053PA1]
gi|314977079|gb|EFT21174.1| peptidase, S54 family protein [Propionibacterium acnes HL045PA1]
gi|314985521|gb|EFT29613.1| peptidase, S54 family protein [Propionibacterium acnes HL005PA1]
gi|315078423|gb|EFT50454.1| peptidase, S54 family protein [Propionibacterium acnes HL053PA2]
gi|315082110|gb|EFT54086.1| peptidase, S54 family protein [Propionibacterium acnes HL078PA1]
gi|315097356|gb|EFT69332.1| peptidase, S54 family protein [Propionibacterium acnes HL038PA1]
gi|315099461|gb|EFT71437.1| peptidase, S54 family protein [Propionibacterium acnes HL059PA2]
gi|315102034|gb|EFT74010.1| peptidase, S54 family protein [Propionibacterium acnes HL046PA1]
gi|315110140|gb|EFT82116.1| peptidase, S54 family protein [Propionibacterium acnes HL030PA2]
gi|327331358|gb|EGE73097.1| membrane protein rhomboid family protein [Propionibacterium acnes
HL096PA2]
gi|327334864|gb|EGE76575.1| membrane protein rhomboid family protein [Propionibacterium acnes
HL097PA1]
gi|327447261|gb|EGE93915.1| peptidase, S54 family protein [Propionibacterium acnes HL043PA1]
gi|327449707|gb|EGE96361.1| peptidase, S54 family protein [Propionibacterium acnes HL043PA2]
gi|327456628|gb|EGF03283.1| peptidase, S54 family protein [Propionibacterium acnes HL083PA2]
gi|327457095|gb|EGF03750.1| peptidase, S54 family protein [Propionibacterium acnes HL092PA1]
gi|328756692|gb|EGF70308.1| peptidase, S54 family protein [Propionibacterium acnes HL025PA2]
gi|328761881|gb|EGF75391.1| membrane protein rhomboid family protein [Propionibacterium acnes
HL099PA1]
Length = 222
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 15 TSCIIGICSVIWF------YIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSH-ISVLHL 67
T +IGIC ++W + + + VG + WR +TS F H +S+ H+
Sbjct: 11 TWTLIGICFLVWVGEWLSPQVGEAVVLAPRVGFT-------EPWRFVTSMFGHALSIFHI 63
Query: 68 VFNMSALWSLG 78
FNM ALW+LG
Sbjct: 64 GFNMYALWALG 74
>gi|50841776|ref|YP_055003.1| membrane spanning protein [Propionibacterium acnes KPA171202]
gi|289424590|ref|ZP_06426373.1| peptidase, S54 family [Propionibacterium acnes SK187]
gi|289428896|ref|ZP_06430576.1| peptidase, S54 family [Propionibacterium acnes J165]
gi|335050432|ref|ZP_08543398.1| peptidase, S54 family [Propionibacterium sp. 409-HC1]
gi|335054191|ref|ZP_08547011.1| peptidase, S54 family [Propionibacterium sp. 434-HC2]
gi|342212068|ref|ZP_08704793.1| peptidase, S54 family [Propionibacterium sp. CC003-HC2]
gi|354606260|ref|ZP_09024231.1| hypothetical protein HMPREF1003_00798 [Propionibacterium sp.
5_U_42AFAA]
gi|386023238|ref|YP_005941541.1| membrane spanning protein [Propionibacterium acnes 266]
gi|407934668|ref|YP_006850310.1| membrane spanning protein [Propionibacterium acnes C1]
gi|50839378|gb|AAT82045.1| membrane spanning protein [Propionibacterium acnes KPA171202]
gi|289155287|gb|EFD03969.1| peptidase, S54 family [Propionibacterium acnes SK187]
gi|289157897|gb|EFD06120.1| peptidase, S54 family [Propionibacterium acnes J165]
gi|332674694|gb|AEE71510.1| membrane spanning protein [Propionibacterium acnes 266]
gi|333765307|gb|EGL42661.1| peptidase, S54 family [Propionibacterium sp. 434-HC2]
gi|333769705|gb|EGL46802.1| peptidase, S54 family [Propionibacterium sp. 409-HC1]
gi|340767612|gb|EGR90137.1| peptidase, S54 family [Propionibacterium sp. CC003-HC2]
gi|353557667|gb|EHC27035.1| hypothetical protein HMPREF1003_00798 [Propionibacterium sp.
5_U_42AFAA]
gi|407903249|gb|AFU40079.1| membrane spanning protein [Propionibacterium acnes C1]
Length = 302
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 28/189 (14%)
Query: 15 TSCIIGICSVIWF------YIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSH-ISVLHL 67
T +IGIC ++W + + + VG + WR +TS F H +S+ H+
Sbjct: 91 TWTLIGICFLVWVGEWLSPQVGEAVVLAPRVGFT-------EPWRFVTSMFGHALSIFHI 143
Query: 68 VFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRR 126
FNM ALW+LG +E LG A +L L+ + G L + R L
Sbjct: 144 GFNMYALWALGRSLEPF----LGRARFLAAYLMSGLGGGALFCLMATADGGRAILPNVDD 199
Query: 127 VTAVGYSCVVFGWMTILSVKQP---SSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
VG S +FG +L + Q +S +L+ L++ + L+F S I QA
Sbjct: 200 -GVVGASGAIFGLFGVLLIVQRRLGASTRELWVVLAINAAL-----LLFISGIAWQAHLG 253
Query: 184 GHLSGIIVG 192
G L G++ G
Sbjct: 254 GFLVGMMCG 262
>gi|365962008|ref|YP_004943574.1| membrane spanning protein [Propionibacterium acnes TypeIA2 P.acn31]
gi|365973189|ref|YP_004954748.1| membrane spanning protein [Propionibacterium acnes TypeIA2 P.acn33]
gi|365738689|gb|AEW82891.1| membrane spanning protein [Propionibacterium acnes TypeIA2 P.acn31]
gi|365743188|gb|AEW78385.1| membrane spanning protein [Propionibacterium acnes TypeIA2 P.acn33]
gi|456740418|gb|EMF64939.1| membrane spanning protein [Propionibacterium acnes FZ1/2/0]
Length = 302
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 28/189 (14%)
Query: 15 TSCIIGICSVIWF------YIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSH-ISVLHL 67
T +IGIC ++W + + + VG + WR +TS F H +S+ H+
Sbjct: 91 TWTLIGICFLVWVGEWLSPQVGEAVVLAPRVGFT-------EPWRFVTSMFGHALSIFHI 143
Query: 68 VFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRR 126
FNM ALW+LG +E LG A +L L+ + G L + R L
Sbjct: 144 GFNMYALWALGRSLEPF----LGRARFLAAYLMSGLGGGALFCLMATADGGRAILPNVDD 199
Query: 127 VTAVGYSCVVFGWMTILSVKQP---SSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
VG S +FG +L + Q +S +L+ L++ + L+F S I QA
Sbjct: 200 -GVVGASGAIFGLFGVLLIVQRRLGASTRELWVVLAINAAL-----LLFISGIAWQAHLG 253
Query: 184 GHLSGIIVG 192
G L G++ G
Sbjct: 254 GFLVGMMCG 262
>gi|367009458|ref|XP_003679230.1| hypothetical protein TDEL_0A06870 [Torulaspora delbrueckii]
gi|359746887|emb|CCE90019.1| hypothetical protein TDEL_0A06870 [Torulaspora delbrueckii]
Length = 267
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 53 RIITSAFSHISVLHLVFN-MSALWSLGVVE-QLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
R+ +H+S HL FN +S + L + E Q G V G L V++GLL
Sbjct: 53 RLSNYPLAHLSFFHLFFNVISLMGPLNLFESQHGTVHTGVVLNLA-----AVITGLL--- 104
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTIL-SVKQPSSKLDLFGFLSLPISFAPFES 169
+ L R A G+ +FG+ + S P + F + P +P
Sbjct: 105 --YCLFGRLAYPDASVAGASGWCFTMFGYFGLKESALHPRYHIPGSNF-AFPTVLSPLVL 161
Query: 170 LIFTSIIVPQASFLGHLSGIIVGYAIA 196
LI SI VP SF GH ++VGY I
Sbjct: 162 LILISIFVPGVSFWGHFFALMVGYFIG 188
>gi|322374129|ref|ZP_08048663.1| rhomboid family protein [Streptococcus sp. C150]
gi|321277095|gb|EFX54166.1| rhomboid family protein [Streptococcus sp. C150]
Length = 224
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 28/147 (19%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR++T F HI + H +FNM L+ +G + EQ+ GT +L L +L+G V+G
Sbjct: 59 WRLVTPIFVHIGLEHFLFNMLTLYFIGKMAEQI----FGTLRFLG----LYLLAG--VMG 108
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGW---MTILSVKQPSSKLDLFG--FLSLPISFA 165
F L + V A G S +FG + IL S L+ G +LSL +
Sbjct: 109 ------NAFTLIFTPNVIAAGASTSLFGLFAAVVILGYYSHSPLLNQLGRSYLSLIVV-- 160
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192
+LIF ++ P GHL G++ G
Sbjct: 161 ---NLIF-NLFTPSVGITGHLGGLVGG 183
>gi|120554987|ref|YP_959338.1| rhomboid family protein [Marinobacter aquaeolei VT8]
gi|120324836|gb|ABM19151.1| Rhomboid family protein [Marinobacter aquaeolei VT8]
Length = 224
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 27/159 (16%)
Query: 45 TAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGD-----VGLGTAYYLQYTLV 99
T G WR++T F H S H++FN LW LG + D VGL A L L+
Sbjct: 76 TLSGGQVWRLLTPDFLHFSWTHIIFNSVMLWFLGSQIEWMDGRARLVGLFLATSLASNLL 135
Query: 100 LVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVK--QPSSKLDLFGF 157
++SG L G+ + V Y + + W++ + Q L F
Sbjct: 136 QYLVSGPLFGGL----------------SGVVYGILGYCWLSQRRLPRFQFPPALVTFAL 179
Query: 158 LSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
+ + I F P +I + +A HL G + G A+A
Sbjct: 180 VWMIIGFTPVPEMIGVGRMANEA----HLGGFLAGLAMA 214
>gi|387502659|ref|YP_005943888.1| membrane spanning protein [Propionibacterium acnes 6609]
gi|335276704|gb|AEH28609.1| membrane spanning protein [Propionibacterium acnes 6609]
Length = 302
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 28/189 (14%)
Query: 15 TSCIIGICSVIWF------YIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSH-ISVLHL 67
T +IGIC ++W + + + VG + WR +TS F H +S+ H+
Sbjct: 91 TWTLIGICFLVWVGEWLSPQVGEAVVLAPRVGFT-------EPWRFVTSMFGHALSIFHI 143
Query: 68 VFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRR 126
FNM ALW+LG +E LG A +L L+ + G L + R L
Sbjct: 144 GFNMYALWALGRSLEPF----LGRARFLAAYLMSGLGGGALFCLMATADGGRAILPNVDD 199
Query: 127 VTAVGYSCVVFGWMTILSVKQP---SSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
VG S +FG +L + Q +S +L+ L++ + L+F S I QA
Sbjct: 200 -GVVGASGAIFGLFGVLLIVQRRLGASTRELWVVLAINAAL-----LLFISGIAWQAHLG 253
Query: 184 GHLSGIIVG 192
G L G++ G
Sbjct: 254 GFLVGMMCG 262
>gi|429195115|ref|ZP_19187166.1| peptidase, S54 family [Streptomyces ipomoeae 91-03]
gi|428669169|gb|EKX68141.1| peptidase, S54 family [Streptomyces ipomoeae 91-03]
Length = 296
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 38 HVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYT 97
+G + + +G +R++TS F H SV+H+ FNM +LW LG + LG A Y
Sbjct: 120 ELGSTLQGVAEGQWYRLLTSMFLHGSVMHIAFNMLSLWWLGGPL---EAALGRARY---- 172
Query: 98 LVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
+ L +SGL + +LL + ++G S +FG +V K D+
Sbjct: 173 IALYFVSGLAGGALTYLLAAPNQ-------ASLGASGAIFGLFGATAVLMRRLKYDM 222
>gi|345301255|ref|YP_004830613.1| Rhomboid protease glpG [Enterobacter asburiae LF7a]
gi|345095192|gb|AEN66828.1| Rhomboid protease glpG [Enterobacter asburiae LF7a]
Length = 276
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 19/152 (12%)
Query: 4 PLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLS----YETAVDGHHWRIITSAF 59
P + E+ ++ + + I +I +G V ++ Y+ +++ WR T A
Sbjct: 84 PFLATVRERAGPFTLLLMAACILVFIIMNVVGDQSVMIALAWPYDPSLEFDVWRYFTHAL 143
Query: 60 SHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR 118
H SV+H++FN+ W L G VE+ LG+ + TL+ +LSG + +
Sbjct: 144 MHFSVMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ--------HK 191
Query: 119 FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
F +F ++ V Y+ + + W+ + P S
Sbjct: 192 FSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>gi|422427046|ref|ZP_16503964.1| peptidase, S54 family protein [Propionibacterium acnes HL087PA1]
gi|422453079|ref|ZP_16529775.1| peptidase, S54 family protein [Propionibacterium acnes HL087PA3]
gi|327454557|gb|EGF01212.1| peptidase, S54 family protein [Propionibacterium acnes HL087PA3]
gi|328755612|gb|EGF69228.1| peptidase, S54 family protein [Propionibacterium acnes HL087PA1]
Length = 222
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 15 TSCIIGICSVIWF------YIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSH-ISVLHL 67
T +IGIC ++W + + + VG + WR +TS F H +S+ H+
Sbjct: 11 TWTLIGICFLVWVGEWLSPQVGEAVVLAPRVGFT-------EPWRFVTSMFGHALSIFHI 63
Query: 68 VFNMSALWSLG 78
FNM ALW+LG
Sbjct: 64 GFNMYALWALG 74
>gi|401765605|ref|YP_006580612.1| intramembrane serine protease GlpG [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400177139|gb|AFP71988.1| intramembrane serine protease GlpG [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 276
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 21/157 (13%)
Query: 4 PLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLS----YETAVDGHHWRIITSAF 59
P I E+ ++ + + I +I +G V ++ Y+ +++ WR T A
Sbjct: 84 PFLATIRERAGPFTLLLMAACIIVFIIMNVVGDQSVMIALAWPYDPSLEFDVWRYFTHAL 143
Query: 60 SHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQ 117
H SV+H++FN+ W LG V ++LG L +V+ V+S LL + H
Sbjct: 144 MHFSVMHILFNLLWWWYLGGIVEKRLGSGKL---------IVITVISALLSGYVQH---- 190
Query: 118 RFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
+F +F ++ V Y+ + + W+ + P S + L
Sbjct: 191 KFSGPWFGGLSGVVYALMGYVWLR--GERDPESGIYL 225
>gi|384099562|ref|ZP_10000648.1| serine endopeptidase [Imtechella halotolerans K1]
gi|383832910|gb|EID72380.1| serine endopeptidase [Imtechella halotolerans K1]
Length = 248
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 46/193 (23%)
Query: 50 HHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLG----------DVGLGTA------- 91
H W+I+T F H SV H+ FNM ALW+ G +EQ+ GLG A
Sbjct: 44 HWWQIVTHMFMHGSVTHIFFNMYALWAFGSPLEQMWGRNKFLFFYFSAGLGAALIHTGVN 103
Query: 92 -YYLQYTLVLVVLSGLLVLGIYHLLIQ-RFKLEYFRRVT---------------AVGYSC 134
Y Q ++ +G+ I LL + ++ + V+ AVG S
Sbjct: 104 YYEFQQGFNALIGAGVDGDQILSLLREGKYDTRWPELVSSPSEVKEMLSAYWQPAVGASG 163
Query: 135 VVFGWMTILSVKQPSSKLDLFGFLSLPIS---FAP-------FESLIFTSIIVPQASFLG 184
++G + ++ P+ +L L F+ +PI F P F L SI +
Sbjct: 164 AIYGILVAFAMMFPNVELFLL-FIPVPIKAKYFIPVLVGLDLFSGLTGYSIFGGGIAHFA 222
Query: 185 HLSGIIVGYAIAW 197
H+ G + G+ + W
Sbjct: 223 HVGGALFGFIMMW 235
>gi|410657229|ref|YP_006909600.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|410660265|ref|YP_006912636.1| Rhomboid-like protein [Dehalobacter sp. CF]
gi|409019584|gb|AFV01615.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|409022621|gb|AFV04651.1| Rhomboid-like protein [Dehalobacter sp. CF]
Length = 203
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 40 GLSYETAVD-GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ 82
G T +D G +WR++TS F HI HL+FN+ AL LG + +
Sbjct: 49 GAKMNTLIDAGQYWRLLTSMFIHIGFTHLLFNVYALIVLGKLAE 92
>gi|419707143|ref|ZP_14234640.1| Conserved hypothetical, predicted membrane protein (TMS6)
[Streptococcus salivarius PS4]
gi|383283103|gb|EIC81070.1| Conserved hypothetical, predicted membrane protein (TMS6)
[Streptococcus salivarius PS4]
Length = 224
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 28/147 (19%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR++T F HI + H +FNM L+ +G + EQ+ GT +L L +L+G V+G
Sbjct: 59 WRLVTPIFVHIGLEHFLFNMLTLYFIGKMAEQI----FGTLRFLG----LYLLAG--VMG 108
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGW---MTILSVKQPSSKLDLFG--FLSLPISFA 165
F L + V A G S +FG + IL S L+ G +LSL +
Sbjct: 109 ------NAFTLIFTPNVIAAGASTSLFGLFAAVVILGYYSHSPLLNQLGRSYLSLIVV-- 160
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192
+LIF ++ P GHL G++ G
Sbjct: 161 ---NLIF-NLFTPSVGITGHLGGLVGG 183
>gi|333025703|ref|ZP_08453767.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
gi|332745555|gb|EGJ75996.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
Length = 341
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 40/184 (21%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSG 105
+G +R++T+AF H + H+ NM +LW LG +E + LG A +L L+ V
Sbjct: 174 AEGEWYRLLTAAFLHQEIWHIAVNMLSLWFLGPAIESM----LGRARFLALYLIAAVGGS 229
Query: 106 LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFG-----FLSL 160
+ L ++G S +FG LFG L +
Sbjct: 230 VASY-----------LFAAPNAASLGASGAIFG---------------LFGATGILVLRV 263
Query: 161 PISFAPFESLIFTSIIV----PQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIV 216
PF +L+ ++I+ ++ H+ G++VG +A GL++ + AL G
Sbjct: 264 RADVRPFVALLVINLIITFGWSNIAWQAHIGGLVVGVLVAAGLVYAPRRHRALVQWGTCA 323
Query: 217 LVFV 220
+V
Sbjct: 324 VVLA 327
>gi|387813646|ref|YP_005429128.1| hypothetical protein MARHY1225 [Marinobacter hydrocarbonoclasticus
ATCC 49840]
gi|381338658|emb|CCG94705.1| conserved hypothetical protein; putative membrane protein
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 234
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 27/159 (16%)
Query: 45 TAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGD-----VGLGTAYYLQYTLV 99
T G WR++T F H S H++FN LW LG + D VGL A L L+
Sbjct: 86 TLSGGQVWRLLTPDFLHFSWTHIIFNSVMLWFLGSQIEWMDGRARLVGLFLATSLASNLL 145
Query: 100 LVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVK--QPSSKLDLFGF 157
++SG L G+ + V Y + + W++ + Q L F
Sbjct: 146 QYLVSGPLFGGL----------------SGVVYGILGYCWLSQRRLPRFQFPPALVTFAL 189
Query: 158 LSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
+ + I F P +I + +A HL G + G A+A
Sbjct: 190 VWMIIGFTPVPEMIGVGRMANEA----HLGGFLAGLAMA 224
>gi|419420506|ref|ZP_13960735.1| membrane spanning protein [Propionibacterium acnes PRP-38]
gi|379978880|gb|EIA12204.1| membrane spanning protein [Propionibacterium acnes PRP-38]
Length = 302
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 28/189 (14%)
Query: 15 TSCIIGICSVIWF------YIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSH-ISVLHL 67
T +IGIC ++W + + + VG + WR +TS F H +S+ H+
Sbjct: 91 TWTLIGICFLVWVGEWLSPQVGEAVVLAPRVGFT-------EPWRFVTSMFGHALSIFHI 143
Query: 68 VFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRR 126
FNM ALW+LG +E LG A +L L+ + G L + R L
Sbjct: 144 GFNMYALWALGRSLEPF----LGRARFLAAYLMSGLGGGALFCLMATADGGRAILPNVDD 199
Query: 127 VTAVGYSCVVFGWMTILSVKQP---SSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
VG S +FG +L + Q +S +L+ L++ + L+F S I QA
Sbjct: 200 -GVVGASGAIFGLFGVLLIVQRRLGASTRELWVVLAINAAL-----LLFISGIAWQAHLG 253
Query: 184 GHLSGIIVG 192
G L G++ G
Sbjct: 254 GFLVGMMCG 262
>gi|422384272|ref|ZP_16464413.1| membrane protein rhomboid family protein [Propionibacterium acnes
HL096PA3]
gi|422429122|ref|ZP_16506027.1| peptidase, S54 family protein [Propionibacterium acnes HL072PA2]
gi|422447666|ref|ZP_16524398.1| peptidase, S54 family protein [Propionibacterium acnes HL036PA3]
gi|422456617|ref|ZP_16533281.1| peptidase, S54 family protein [Propionibacterium acnes HL030PA1]
gi|422479515|ref|ZP_16555925.1| peptidase, S54 family protein [Propionibacterium acnes HL063PA1]
gi|422481722|ref|ZP_16558121.1| peptidase, S54 family protein [Propionibacterium acnes HL036PA1]
gi|422487801|ref|ZP_16564132.1| peptidase, S54 family protein [Propionibacterium acnes HL013PA2]
gi|422489244|ref|ZP_16565571.1| peptidase, S54 family protein [Propionibacterium acnes HL020PA1]
gi|422494346|ref|ZP_16570641.1| peptidase, S54 family protein [Propionibacterium acnes HL025PA1]
gi|422497819|ref|ZP_16574092.1| peptidase, S54 family protein [Propionibacterium acnes HL002PA3]
gi|422504040|ref|ZP_16580277.1| peptidase, S54 family protein [Propionibacterium acnes HL027PA2]
gi|422504749|ref|ZP_16580983.1| peptidase, S54 family protein [Propionibacterium acnes HL036PA2]
gi|422509223|ref|ZP_16585381.1| peptidase, S54 family protein [Propionibacterium acnes HL046PA2]
gi|422514207|ref|ZP_16590328.1| peptidase, S54 family protein [Propionibacterium acnes HL087PA2]
gi|422535157|ref|ZP_16611080.1| peptidase, S54 family protein [Propionibacterium acnes HL072PA1]
gi|422552953|ref|ZP_16628740.1| peptidase, S54 family protein [Propionibacterium acnes HL005PA3]
gi|422554818|ref|ZP_16630588.1| peptidase, S54 family protein [Propionibacterium acnes HL005PA2]
gi|422567566|ref|ZP_16643192.1| peptidase, S54 family protein [Propionibacterium acnes HL002PA2]
gi|313806420|gb|EFS44927.1| peptidase, S54 family protein [Propionibacterium acnes HL087PA2]
gi|313814531|gb|EFS52245.1| peptidase, S54 family protein [Propionibacterium acnes HL025PA1]
gi|313817449|gb|EFS55163.1| peptidase, S54 family protein [Propionibacterium acnes HL046PA2]
gi|313821965|gb|EFS59679.1| peptidase, S54 family protein [Propionibacterium acnes HL036PA1]
gi|313824139|gb|EFS61853.1| peptidase, S54 family protein [Propionibacterium acnes HL036PA2]
gi|313826506|gb|EFS64220.1| peptidase, S54 family protein [Propionibacterium acnes HL063PA1]
gi|314926626|gb|EFS90457.1| peptidase, S54 family protein [Propionibacterium acnes HL036PA3]
gi|314961310|gb|EFT05411.1| peptidase, S54 family protein [Propionibacterium acnes HL002PA2]
gi|314980346|gb|EFT24440.1| peptidase, S54 family protein [Propionibacterium acnes HL072PA2]
gi|314987347|gb|EFT31438.1| peptidase, S54 family protein [Propionibacterium acnes HL005PA2]
gi|314989112|gb|EFT33203.1| peptidase, S54 family protein [Propionibacterium acnes HL005PA3]
gi|315082747|gb|EFT54723.1| peptidase, S54 family protein [Propionibacterium acnes HL027PA2]
gi|315086105|gb|EFT58081.1| peptidase, S54 family protein [Propionibacterium acnes HL002PA3]
gi|315087690|gb|EFT59666.1| peptidase, S54 family protein [Propionibacterium acnes HL072PA1]
gi|315106354|gb|EFT78330.1| peptidase, S54 family protein [Propionibacterium acnes HL030PA1]
gi|327333344|gb|EGE75064.1| membrane protein rhomboid family protein [Propionibacterium acnes
HL096PA3]
gi|327445638|gb|EGE92292.1| peptidase, S54 family protein [Propionibacterium acnes HL013PA2]
gi|328758378|gb|EGF71994.1| peptidase, S54 family protein [Propionibacterium acnes HL020PA1]
Length = 222
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 15 TSCIIGICSVIWF------YIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSH-ISVLHL 67
T +IGIC ++W + + + VG + WR +TS F H +S+ H+
Sbjct: 11 TWTLIGICFLVWVGEWLSPQVGEAVVLAPRVGFT-------EPWRFVTSMFGHALSIFHI 63
Query: 68 VFNMSALWSLG 78
FNM ALW+LG
Sbjct: 64 GFNMYALWALG 74
>gi|300780117|ref|ZP_07089973.1| rhomboid family protein [Corynebacterium genitalium ATCC 33030]
gi|300534227|gb|EFK55286.1| rhomboid family protein [Corynebacterium genitalium ATCC 33030]
Length = 215
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 23/145 (15%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
R +TS F H+ + HLV N+ L +G VVE+ +GT Y+ L ++ VL
Sbjct: 61 RALTSGFLHVDISHLVVNLFVLVFIGPVVERF----VGTGPYVAAYLACILGGSAAVL-- 114
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
F + TA G S ++G M IL ++ DL L L +L+
Sbjct: 115 ---------FFGFAQPTA-GASGALYGLMAILVAIAARNRADLRAPLVLVAG-----NLV 159
Query: 172 FTSIIVPQASFLGHLSGIIVGYAIA 196
FT +++P S GHL G++ G IA
Sbjct: 160 FT-LVMPGVSLWGHLGGMVTGALIA 183
>gi|386087436|ref|YP_006003310.1| hypothetical protein [Streptococcus thermophilus ND03]
gi|312279149|gb|ADQ63806.1| Conserved hypothetical, predicted membrane protein (TMS6)
[Streptococcus thermophilus ND03]
Length = 224
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 28/147 (19%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR+IT F HI V H +FNM L+ +G + EQ+ GT +L L +L+G V+G
Sbjct: 59 WRLITPIFVHIGVEHFLFNMLTLYFMGRMAEQI----FGTLRFLG----LYLLAG--VMG 108
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGW---MTILSVKQPSSKLDLFG--FLSLPISFA 165
F L + V A G S +FG + I+ S L+ G +L+L +
Sbjct: 109 ------NAFTLLFTPNVIAAGASTSLFGLFAAIVIIGYYSHSPLLNQLGRNYLALIVI-- 160
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192
+LIF ++ P GHL G++ G
Sbjct: 161 ---NLIF-NLFTPSVGITGHLGGLVGG 183
>gi|312137531|ref|YP_004004867.1| serine peptidase [Rhodococcus equi 103S]
gi|311886870|emb|CBH46178.1| putative serine peptidase [Rhodococcus equi 103S]
Length = 321
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 28/158 (17%)
Query: 41 LSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVL 100
L G +R+I S F H ++HL NM ALW LG + ++ LG + YL L+
Sbjct: 134 LDSSAVAQGELFRVIGSGFLHFGLIHLAVNMFALWVLG---RDTEIVLGRSRYLAVYLI- 189
Query: 101 VVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSL 160
L+ G L+ + G S +FG M +V L +
Sbjct: 190 -----SLLGGSASALMFESPFAF-----TAGASGAIFGIMGAQAVL----------LLRM 229
Query: 161 PISFAPFESLI----FTSIIVPQASFLGHLSGIIVGYA 194
S P ++I S+ VP S GHL G++ G A
Sbjct: 230 RRSATPVLTVIGINVVISLTVPGISLWGHLGGLVAGAA 267
>gi|326792345|ref|YP_004310166.1| peptidase S9 prolyl oligopeptidase active site domain-containing
protein [Clostridium lentocellum DSM 5427]
gi|326543109|gb|ADZ84968.1| Peptidase S54, rhomboid domain [Clostridium lentocellum DSM 5427]
Length = 518
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 39/188 (20%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSG 105
++G +WR IT F H S++HL+ N +L+ +G +VE+L G YL ++ + S
Sbjct: 226 LEGEYWRFITPIFLHGSLMHLLVNCYSLYIIGSLVERLYGRGRFITSYLIAGILGNLCSF 285
Query: 106 LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165
L V G +VG S +FG M IL L+ L P+ F
Sbjct: 286 LFVPG-----------------PSVGASGAIFGLMGIL----------LYFGLERPLQFK 318
Query: 166 P-FESLIFTSIIVPQA--------SFLGHLSGIIVGYAIAWGLIHGM-NNYWALSMLGWI 215
F S I T+I++ HL G+I G+ +A G++ + +W + L ++
Sbjct: 319 VYFGSSIITTILINLVYGFSSTGIDNFAHLGGLIGGF-LAIGILSNVKKKHWYFNKLLYV 377
Query: 216 VLVFVYSL 223
+++ V ++
Sbjct: 378 IVLSVLTV 385
>gi|296167263|ref|ZP_06849666.1| rhomboid family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295897363|gb|EFG76966.1| rhomboid family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 285
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ--LGDVGLGTAYYL 94
DG ++R+ TSAF H HLVFNM AL+ +G + LG + G Y +
Sbjct: 108 ADGQYYRLATSAFLHYGATHLVFNMWALYVVGPPLESWLGRLRFGALYAM 157
>gi|182414011|ref|YP_001819077.1| rhomboid family protein [Opitutus terrae PB90-1]
gi|177841225|gb|ACB75477.1| Rhomboid family protein [Opitutus terrae PB90-1]
Length = 489
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQL 83
DG WRI+TS F H +LHL NM AL+ G VE+L
Sbjct: 184 TDGEWWRIVTSMFVHYGLLHLALNMWALFQTGHFVERL 221
>gi|358448364|ref|ZP_09158868.1| rhomboid family protein [Marinobacter manganoxydans MnI7-9]
gi|357227461|gb|EHJ05922.1| rhomboid family protein [Marinobacter manganoxydans MnI7-9]
Length = 287
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 45 TAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLS 104
T G WR++T F H S H++FN LW LG + D G A ++L V++
Sbjct: 138 TLASGQVWRLLTPDFLHFSWTHIIFNSVMLWFLGSQIEWFD---GRARL----IMLFVIT 190
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVK--QPSSKLDLFGFLSLPI 162
L+ G+ + + F ++ V Y + + W++ S Q L F + I
Sbjct: 191 SLISNGLQYFV----SGPLFGGLSGVVYGILGYCWLSQRSAPRFQFPPALVTFAVAWMVI 246
Query: 163 SFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
F P +I + +A HL G + G A+A
Sbjct: 247 GFTPLPEMIGLGRMANEA----HLGGFVAGLALA 276
>gi|340619654|ref|YP_004738107.1| serine endopeptidase [Zobellia galactanivorans]
gi|339734451|emb|CAZ97828.1| Serine endopeptidase, family S54 [Zobellia galactanivorans]
Length = 247
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 75/192 (39%), Gaps = 49/192 (25%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLG----------DVGLGTA--------Y 92
++IIT F H H+ FNM ALW+ G +EQL GLG+A Y
Sbjct: 46 YQIITHMFMHGGFTHIAFNMYALWAFGTPLEQLWGRNKFLFFYFSAGLGSALIHTGVNYY 105
Query: 93 YLQYTLVLVVLSGLLVLGIYHLL-----------------IQRFKLEYFRRVTAVGYSCV 135
Y + +V SG+ + ++ I F Y AVG S
Sbjct: 106 YFSEGMQALVNSGMTEANVMEIISSGQYSPDWYNIASKSTIDNFLSAY--STPAVGASGA 163
Query: 136 VFGWMTILSVKQPSSKLDLFGFLSLPIS---FAP-------FESLIFTSIIVPQASFLGH 185
++G + + P+S+L L FL +PI F P F + S+ + H
Sbjct: 164 IYGVLVAFGMMFPNSELFLI-FLPIPIKAKYFIPVLIGLDLFSGVTGYSLFGQGIAHFAH 222
Query: 186 LSGIIVGYAIAW 197
+ G + G+ + W
Sbjct: 223 IGGALFGFLMMW 234
>gi|295129855|ref|YP_003580518.1| peptidase, S54 (rhomboid) family protein [Propionibacterium acnes
SK137]
gi|417931189|ref|ZP_12574562.1| peptidase, S54 family [Propionibacterium acnes SK182]
gi|291376681|gb|ADE00536.1| peptidase, S54 (rhomboid) family protein [Propionibacterium acnes
SK137]
gi|340769512|gb|EGR92036.1| peptidase, S54 family [Propionibacterium acnes SK182]
Length = 302
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 28/189 (14%)
Query: 15 TSCIIGICSVIWF------YIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSH-ISVLHL 67
T +IGIC ++W + + + VG + WR +TS F H +S+ H+
Sbjct: 91 TWTLIGICFLVWVGEWLSPQVGEAVVLAPRVGFT-------EPWRFVTSMFGHALSIFHI 143
Query: 68 VFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRR 126
FNM ALW+LG +E LG A +L L+ + G L + R L
Sbjct: 144 GFNMYALWALGRSLEPF----LGRARFLAAYLMSGLGGGALFCLMATADGGRAILPNVDD 199
Query: 127 VTAVGYSCVVFGWMTILSVKQP---SSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFL 183
VG S +FG +L + Q +S +L+ L++ + L+F S I QA
Sbjct: 200 -GVVGASGAIFGLFGVLLIVQRRLGASTRELWVVLAINAAL-----LLFISGIAWQAHLG 253
Query: 184 GHLSGIIVG 192
G L G++ G
Sbjct: 254 GFLVGMMCG 262
>gi|261886402|ref|ZP_06010441.1| rhomboid family protein [Campylobacter fetus subsp. venerealis
str. Azul-94]
Length = 172
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 13 PATSCIIGICSVIWF--YIQKKNIGYS-HVGLSYETAVDGHHWRIITSAFSHISVLHLVF 69
AT +I I +V++F Y + +S GL+ E +G +W++IT+ F H S++H++
Sbjct: 2 TATPFLIAINAVVYFLEYSVYNSRSFSIFFGLN-ELFFEGAYWQLITTMFLHGSLMHILM 60
Query: 70 NMSALWSLGVVEQ--LGDV 86
NM+ L+ G++ + LG V
Sbjct: 61 NMAVLYQFGMLLERYLGSV 79
>gi|225352405|ref|ZP_03743428.1| hypothetical protein BIFPSEUDO_04025 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225156912|gb|EEG70281.1| hypothetical protein BIFPSEUDO_04025 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 264
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 28/201 (13%)
Query: 15 TSCIIGICSVIWFYIQKKNIGY-----SHVGLS-YETAVDGHH-WRIITSAFSH--ISVL 65
T I+ IC +W I + + VG + A+ H W ITS F H S+
Sbjct: 36 TVTIMAICVAVWIVETLLKIVWPTGCNAFVGSGVFMPALATHRPWTFITSMFLHQPASLW 95
Query: 66 HLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYF 124
H++FNM LW +G V+E++ +L Y L L VLSGL G +++ +
Sbjct: 96 HILFNMLTLWCVGPVLERMMG-------HLPY-LALYVLSGLG--GSAGMMVWALFSQDG 145
Query: 125 RRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLS-LPISFAPFESLIFTSIIVPQASFL 183
+A G S +FG + V +D+ L + I+F II P ++
Sbjct: 146 WLTSAYGASGALFGLFAAILVVYQRIGIDIRSMLIWMLINF-------LMPIITPNIAWQ 198
Query: 184 GHLSGIIVGYAIAWGLIHGMN 204
H+ G I+G AW L+ G++
Sbjct: 199 AHVGGFIIGGVFAWLLVSGLH 219
>gi|451794589|gb|AGF64638.1| hypothetical protein SHJGH_4975 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 295
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 21/170 (12%)
Query: 45 TAVDGHHW-RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVL 103
+ V G W R +TS F+H H+ FNM +LW +G + LG A YL V
Sbjct: 125 SGVAGGEWYRFVTSMFAHQEYWHIGFNMLSLWWIGGPLE---AALGRARYLAVYFV---- 177
Query: 104 SGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
SGL + +LL + ++G S +FG +V D+ ++L +
Sbjct: 178 SGLAGGALTYLLTS-------PQTASLGASGAIFGLFGATAVLMRRLNYDMRPVIALLVI 230
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLG 213
+LIFT V ++ H+ G++ G + ++H AL G
Sbjct: 231 -----NLIFT-FGVGNIAWQAHIGGLVAGVVTGYAMVHAPREKRALVQYG 274
>gi|449480070|ref|XP_004177070.1| PREDICTED: rhomboid domain-containing protein 2 [Taeniopygia
guttata]
Length = 312
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 12/152 (7%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
DG R+IT F + ++ L +W G E+ +GT + T VLS L
Sbjct: 65 DGEVHRLITYIFIYEDLISLACGTVIIWYFAGSFER----NVGTVKHCILTATFSVLSAL 120
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAP 166
L L + L+ + ++ A G+ V F + + + + + LFG +P+ P
Sbjct: 121 LYLSLQPLVSRLLEVG-----DAKGFMPVAFAMLGVSTTRSRMKRTLLFG-CRVPVVLVP 174
Query: 167 FESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
+ L + VP +S LG+L G++VG A G
Sbjct: 175 WLGLC-PAWFVPHSSLLGNLCGLLVGEAYGLG 205
>gi|423142032|ref|ZP_17129670.1| peptidase, S54 family protein [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
gi|379049961|gb|EHY67854.1| peptidase, S54 family protein [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
Length = 274
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 91/201 (45%), Gaps = 27/201 (13%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITS 57
P + E+ P T ++ C ++ YI +G V ++ A+ WR T
Sbjct: 82 PFLATLRERAGPITWMVMIACVLV--YIAMNIVGDQTVMVWLAWPFDPALKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
F H S++H++FN+ W L G VE+ LG+ + T++ +LSG +
Sbjct: 140 IFMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITVISALLSGYIQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL-FGFLSLPISFAPFESLIFTSI 175
Q+F +F ++ V Y+ + + W+ + P S + L G + + + L + +
Sbjct: 188 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQSGIYLQRGLIIFALLWIVAGWLDWFGM 245
Query: 176 IVPQASFLGHLSGIIVGYAIA 196
+ + H++G+IVG A+A
Sbjct: 246 SMANGA---HIAGLIVGLAMA 263
>gi|295097029|emb|CBK86119.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 276
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 4 PLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLS----YETAVDGHHWRIITSAF 59
P + E+ ++ + + I +I +G V ++ Y+ ++ WR T A
Sbjct: 84 PFLATLRERAGPFTLLLMAACIIVFIIMSVVGDQSVMIALAWPYDPSLQFDVWRYFTHAL 143
Query: 60 SHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR 118
H SV+H++FN+ W L G VE+ LG+ + TL+ +LSG + +
Sbjct: 144 MHFSVMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ--------HK 191
Query: 119 FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
F +F ++ V Y+ + + W+ + P S
Sbjct: 192 FSGPWFGGLSGVVYALMGYAWLR--GERDPDS 221
>gi|262200065|ref|YP_003271273.1| rhomboid family protein [Gordonia bronchialis DSM 43247]
gi|262083412|gb|ACY19380.1| Rhomboid family protein [Gordonia bronchialis DSM 43247]
Length = 303
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 28/158 (17%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQ-YTLVLVVLSGL 106
+G +WR++T+ F H SV+H+ NM +L+ +G L + LGT YL Y + L+ S
Sbjct: 121 EGEYWRLLTAGFLHFSVMHVAVNMISLYIIG--RDL-ERALGTYRYLAVYLISLLGGSAA 177
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM--TILSVKQPSSK-LDLFGFLSLPIS 163
++L F+ + + A G + G M +L + P++ L + GF
Sbjct: 178 VML---------FEADNVQTAGASGAIYGLIGAMLVIVLKARVPATPVLVIIGF------ 222
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
+ S+ +P S + HL G+ G A +++
Sbjct: 223 ------NVVLSVSLPGISLMAHLGGLAFGVAATAAIVY 254
>gi|326329176|ref|ZP_08195504.1| rhomboid family protein [Nocardioidaceae bacterium Broad-1]
gi|325953063|gb|EGD45075.1| rhomboid family protein [Nocardioidaceae bacterium Broad-1]
Length = 268
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLG 78
DG W+++TS F+H+S++HL NM +L+ LG
Sbjct: 103 DGAVWQLLTSTFTHVSIIHLAVNMLSLYMLG 133
>gi|320528438|ref|ZP_08029600.1| peptidase, S54 family protein [Solobacterium moorei F0204]
gi|320131352|gb|EFW23920.1| peptidase, S54 family protein [Solobacterium moorei F0204]
Length = 266
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
G WR++T+ F H+ + HL NM AL SLG + E L LG YL + +V+ L
Sbjct: 49 GEFWRLLTAGFVHVHLWHLAMNMMALLSLGKIFEPL----LGMKRYLMILIPSIVVGSLF 104
Query: 108 VL 109
VL
Sbjct: 105 VL 106
>gi|385330803|ref|YP_005884754.1| rhomboid family protein [Marinobacter adhaerens HP15]
gi|311693953|gb|ADP96826.1| rhomboid family protein [Marinobacter adhaerens HP15]
Length = 281
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 17/154 (11%)
Query: 45 TAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLS 104
T G WR++T F H S H++FN LW LG + D G A + L V++
Sbjct: 132 TLASGQVWRLLTPDFLHFSWTHIIFNSVMLWFLGSQIEWFD---GRARL----VTLFVMT 184
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVK--QPSSKLDLFGFLSLPI 162
L+ G+ + + F ++ V Y + + W++ S Q L F + I
Sbjct: 185 SLISNGLQYFV----SGPLFGGLSGVVYGILGYCWLSQRSAPRFQFPPALVTFAVAWMVI 240
Query: 163 SFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
F P +I + +A HL G + G A+A
Sbjct: 241 GFTPLPEMIGLGRMANEA----HLGGFVAGLALA 270
>gi|412988172|emb|CCO17508.1| predicted protein [Bathycoccus prasinos]
Length = 329
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVL--- 109
R + S+F H LHL +N+S+L + G+ + G + L + LV V+ G +
Sbjct: 84 RTLFSSFVHGDELHLAYNLSSLLTKGIKLEERYGGKAEKFVLLFCLVSVLTHGFAAIIAG 143
Query: 110 GIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFES 169
G++H + F + + T G S V+F TI+ + P FG L +P
Sbjct: 144 GLFHSGL--FDGDVYYNAT-YGSSGVLFALQTIVLGENPRGNYSFFG-LQVPAHRLALTE 199
Query: 170 LIFTSIIVPQA-SFLGHLSGIIVG 192
+ ++ P + + H+SGI+ G
Sbjct: 200 VGLLYLMNPSTLNLIVHVSGILAG 223
>gi|403175194|ref|XP_003334051.2| hypothetical protein PGTG_15595 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171494|gb|EFP89632.2| hypothetical protein PGTG_15595 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 447
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 30/178 (16%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVV------------EQLGDVGLGTAYYL 94
+ G + +ITS FSH S LH FNM AL+S+G + V + +
Sbjct: 240 LSGKSYTLITSTFSHSSALHFGFNMLALYSIGSTAHDFLTHRLRASRDVDPVRIPESTPT 299
Query: 95 QYTLVLVVLSGLLV---LGIYHLLIQRFKLEYFRR------------VTAVGYSCVVFGW 139
+ L V +GL Y LLI+ +L +R+ + ++G S ++G
Sbjct: 300 YHFLAFYVFAGLAASFGSHAYSLLIRAPRLLKWRQGLSKSSTPPSPILPSLGASGAIYGC 359
Query: 140 MTILSVKQPSSKLDL--FGFLSLPISFAPFESLIFTSI-IVPQASFLGHLSGIIVGYA 194
+T+ ++ P + + L ++ L I A F +++F I ++ + H++ + G A
Sbjct: 360 LTMTALAFPEAHVSLIFLPWVPLKIGNAVFGAMLFDFIGVIRNWRYFDHMAHLCGGLA 417
>gi|318057482|ref|ZP_07976205.1| hypothetical protein SSA3_06048 [Streptomyces sp. SA3_actG]
Length = 341
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 40/184 (21%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSG 105
+G +R++T+AF H + H+ NM +LW LG +E + LG A +L L+ V
Sbjct: 174 AEGEWYRLLTAAFLHQEIWHIAVNMLSLWFLGPAIESM----LGRARFLALYLIAAVGGS 229
Query: 106 LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFG-----FLSL 160
+ L ++G S +FG LFG L +
Sbjct: 230 VASY-----------LFAAPNAASLGASGAIFG---------------LFGATGILVLRV 263
Query: 161 PISFAPFESLIFTSIIV----PQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIV 216
PF +L+ ++I+ ++ H+ G++VG +A GL++ + AL G
Sbjct: 264 RADVRPFVALLVINLIITFGWSNIAWQAHIGGLVVGVLVAAGLVYAPRRHRALVQWGTCA 323
Query: 217 LVFV 220
+V
Sbjct: 324 VVLA 327
>gi|377556210|ref|ZP_09785925.1| Rhomboid family protein [Lactobacillus gastricus PS3]
gi|376168633|gb|EHS87381.1| Rhomboid family protein [Lactobacillus gastricus PS3]
Length = 221
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 11 EKPATSCIIGICSVIWFYIQKKNIGYSHV------GLSYETA-VDGHHWRIITSAFSHIS 63
P T II + V+ F + N G ++ G Y V G WR+ITSAF HI
Sbjct: 7 RTPVTITII-VIRVLVFIAMELNGGSTNTVTLLNFGAEYTPLLVAGQWWRLITSAFVHIG 65
Query: 64 VLHLVFNMSALWSLG-VVEQL 83
++HL+ N L+ +G +EQL
Sbjct: 66 IMHLLLNSIVLYYMGNYIEQL 86
>gi|417949957|ref|ZP_12593086.1| hypothetical protein VISP3789_05199 [Vibrio splendidus ATCC
33789]
gi|342807387|gb|EGU42576.1| hypothetical protein VISP3789_05199 [Vibrio splendidus ATCC
33789]
Length = 180
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALW 75
VDG WRI+T FSH + HL+ N++ LW
Sbjct: 32 VDGQWWRILTGNFSHTNYSHLLMNLAGLW 60
>gi|384136044|ref|YP_005518758.1| rhomboid family protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339290129|gb|AEJ44239.1| Rhomboid family protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 201
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 31/192 (16%)
Query: 31 KKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLG 89
K G G Y V+ W R++++ F H+S+ H++ NM +LW+L VEQ L
Sbjct: 13 KSTFGLLRAGALYPPLVEHGQWFRVLSTMFVHVSLWHILVNMISLWTLFAVEQ----ALS 68
Query: 90 TAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGW------MTIL 143
T ++ ++ + LL L I +V+A G S +FG + ++
Sbjct: 69 TPVFIALYVISGAVGSLLTLPISP-----------DQVSA-GASGAIFGLFGAMLALALM 116
Query: 144 SVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGM 203
+ P + L L++ +++ + + ++ HL G+ G A+ +G +
Sbjct: 117 GMFPPYVRNQLLMVLAV--------NVVIDIMNLGTIGWMAHLGGLATGMALTYGFAKWL 168
Query: 204 NNYWALSMLGWI 215
N ++L WI
Sbjct: 169 RNPRFWTVLAWI 180
>gi|410627818|ref|ZP_11338551.1| GlpG protein [Glaciecola mesophila KMM 241]
gi|410152573|dbj|GAC25320.1| GlpG protein [Glaciecola mesophila KMM 241]
Length = 292
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 14/95 (14%)
Query: 47 VDGHHW-RIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLS 104
++ H W R+I A H SVLH+VFN+ W+L G +E+L LG + TL+++ LS
Sbjct: 142 MENHQWWRLIGPALIHFSVLHIVFNLLWWWTLGGQIERL----LG-----KTTLIILFLS 192
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGW 139
L+ + LL+ E+F ++ V Y+ V W
Sbjct: 193 SALLSNVGQLLVSG---EHFGGLSGVVYALVGCVW 224
>gi|419658494|ref|ZP_14189122.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni 1997-1]
gi|380633389|gb|EIB51348.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni 1997-1]
Length = 172
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 23/153 (15%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
+G +W++++S F H ++ HL+ NM L+ G ++ + LG + + G L
Sbjct: 33 NGAYWQLLSSMFLHGNLTHLILNMIVLFQFG---RMLETYLGAL-----CFIFIYFIGGL 84
Query: 108 VLGIYHLLIQRFKLEYF-RRVTAVGYS---CVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
+ + + F +YF + +G S CV+ G+ +L K + L + L +S
Sbjct: 85 LCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVLD-KNSTKGLIV---AILLMS 140
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
FAP ++ ++ GH+ G + GY +A
Sbjct: 141 FAPL-------LMGVNVAWYGHIFGFMCGYILA 166
>gi|322390373|ref|ZP_08063896.1| rhomboid family protein [Streptococcus parasanguinis ATCC 903]
gi|321142914|gb|EFX38369.1| rhomboid family protein [Streptococcus parasanguinis ATCC 903]
Length = 225
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 23/149 (15%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
WRI+T+ F HI + H V NM L+ LG +L + G+ +L L +LSG++
Sbjct: 59 WRIVTATFVHIGLEHFVLNMITLYYLG---RLAEDLFGSKAFLA----LYLLSGMMG--- 108
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
++ + F + V A G S +FG + + + LS + SLI
Sbjct: 109 -NVFVAIFTPD----VIAAGASTALFGLFGTIGALRFIVQSPYIRHLS-----QSYTSLI 158
Query: 172 FTSII---VPQASFLGHLSGIIVGYAIAW 197
++I +P S GH+ G++ G +A+
Sbjct: 159 VVNLIFSFMPGISMAGHIGGLVAGLMLAY 187
>gi|433457891|ref|ZP_20415857.1| rhomboid family membrane protein [Arthrobacter crystallopoietes
BAB-32]
gi|432194164|gb|ELK50817.1| rhomboid family membrane protein [Arthrobacter crystallopoietes
BAB-32]
Length = 225
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 48 DGHHWRIITSAFSHIS--VLHLVFNMSALWSLG 78
D WR+ITSAF H +LH+ FN+ ALW LG
Sbjct: 58 DAEPWRMITSAFLHSQGFILHIAFNLYALWILG 90
>gi|343500763|ref|ZP_08738652.1| GlpG protein [Vibrio tubiashii ATCC 19109]
gi|418478504|ref|ZP_13047607.1| GlpG protein [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342819872|gb|EGU54706.1| GlpG protein [Vibrio tubiashii ATCC 19109]
gi|384573856|gb|EIF04340.1| GlpG protein [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 276
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T ++ IC VI F +Q+ G + A G W R ++ A H S++H+ F
Sbjct: 98 PITLSVMVICLVI-FTMQQLGSGKGVFAALHFPAFAGQEWQLWRWVSHAVLHFSIMHIAF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSG 105
N+ W LG GD+ LG+ LQ +V LSG
Sbjct: 157 NLLWWWQLG-----GDIEQRLGSGKLLQLFVVSAALSG 189
>gi|384441619|ref|YP_005657922.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni M1]
gi|307747902|gb|ADN91172.1| Rhomboid family protein [Campylobacter jejuni subsp. jejuni M1]
Length = 172
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 23/153 (15%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
+G +W++++S F H ++ HL+ NM L+ G + + Y + + G L
Sbjct: 33 NGAYWQLLSSMFLHGNLTHLILNMIVLFQFGRILE--------TYLGALRFIFIYFIGGL 84
Query: 108 VLGIYHLLIQRFKLEYF-RRVTAVGYS---CVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
+ + + F +YF + +G S CV+ G+ +L K + L + L +S
Sbjct: 85 LCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVLD-KNSTKGLIV---AILLMS 140
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
FAP ++ ++ GH+ G + GY +A
Sbjct: 141 FAPL-------LMGVNVAWYGHIFGFMCGYILA 166
>gi|336467427|gb|EGO55591.1| rhomboid protein 2 [Neurospora tetrasperma FGSC 2508]
gi|350287930|gb|EGZ69166.1| rhomboid protein 2 [Neurospora tetrasperma FGSC 2509]
Length = 276
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVL---SGLLV 108
+RI T F H+++ H + N+ A L L + TL V L +
Sbjct: 72 YRINTFPFIHLNIFHTILNIVAFTPL----------LERFEHEHGTLTSVALFFGPFATI 121
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQ-PSSKLDLFGFLSLPISFAPF 167
G+ ++ I+RF L +G S VF + + +++ ++ ++P P
Sbjct: 122 PGLIYVFIERFILH--ANTPVMGASMWVFLLLGMEAIRTYKTNPYFTISTYNIPTWITPL 179
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
++ T+ ++P +SFLGHL+G++VGY G
Sbjct: 180 LLVVVTAALLPSSSFLGHLAGLLVGYGFGLG 210
>gi|258647675|ref|ZP_05735144.1| rhomboid family protein [Prevotella tannerae ATCC 51259]
gi|260852504|gb|EEX72373.1| rhomboid family protein [Prevotella tannerae ATCC 51259]
Length = 312
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 43/255 (16%)
Query: 13 PATSCIIGICSVI---WFYIQKKNIG--YSHVGLSYETAVDGHHWRIITSAFSHISVLHL 67
P T ++ I S++ + +Q++ I GL + A D W+++T F H + HL
Sbjct: 9 PITKNLLIINSIVLLAQYVLQQRGIADLSQMFGLHFILADDFRPWQLVTYMFLHDGLSHL 68
Query: 68 VFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL----VLGIYHLL-IQRFKL- 121
FNM ALW G+V + LG +L Y V + +GL LG Y++ +Q + +
Sbjct: 69 FFNMFALWMFGMVI---ERTLGFKRFLIYYFVCGIGAGLCQEAWQLGQYYIEGLQNYTIV 125
Query: 122 ----------EYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
Y T +G S +G + V P+ ++ L L PI ++
Sbjct: 126 DTGMAVIPMSAYLNTWTTIGASGACYGVLLAFGVLYPNERIML---LIPPIPLKAKYMVV 182
Query: 172 FTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFVYSLKRSGTYDF 231
+ I A+F +G I +A G+ + GW++L+ + ++G
Sbjct: 183 GYAAIELIAAFA--TNGNIAHFAHLGGM-----------LFGWLLLIIWRN--KAGGRRS 227
Query: 232 NFLEIESVTDPSLPS 246
NF E+ T P PS
Sbjct: 228 NFSGWETYT-PKKPS 241
>gi|421498003|ref|ZP_15945147.1| GlpG protein [Aeromonas media WS]
gi|407182976|gb|EKE56889.1| GlpG protein [Aeromonas media WS]
Length = 288
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLG--VVEQLG 84
D WR +T AF H SVLHLVFN+ W LG + ++LG
Sbjct: 145 TDWQAWRYVTPAFIHFSVLHLVFNLLWWWYLGGQIEQRLG 184
>gi|255526224|ref|ZP_05393142.1| Rhomboid family protein [Clostridium carboxidivorans P7]
gi|296185575|ref|ZP_06853984.1| peptidase, S54 (rhomboid) family protein [Clostridium
carboxidivorans P7]
gi|255510064|gb|EET86386.1| Rhomboid family protein [Clostridium carboxidivorans P7]
gi|296049703|gb|EFG89128.1| peptidase, S54 (rhomboid) family protein [Clostridium
carboxidivorans P7]
Length = 323
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 23/151 (15%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
G ++R+IT F H ++HL+ NM AL+SLG +E++ G Y L++ LSG +
Sbjct: 184 GEYYRLITCMFLHGGIMHLLLNMFALYSLGPFIEKI----YGKTRY----LIIYFLSG-I 234
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM--TILSVKQPSSKLDLFGFLSLPISFA 165
V I+ + F ++G S +FG + ++ + ++ GF++ +S
Sbjct: 235 VSSIFSYM--------FSTAVSIGASGAIFGLLGAALIFAMKMKDRIGR-GFITNIVSVI 285
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
+F + GHL G+I G AI
Sbjct: 286 FIN--LFMGFSMSNVDNFGHLGGLIGGSAIT 314
>gi|146302229|ref|YP_001196820.1| rhomboid family protein [Flavobacterium johnsoniae UW101]
gi|146156647|gb|ABQ07501.1| Rhomboid family protein [Flavobacterium johnsoniae UW101]
Length = 212
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
G R++TS F H ++HL FNM LW V++ LG+ ++ VLV L
Sbjct: 39 GEQIRMLTSGFLHADMMHLFFNMLTLWFFAPVVIDSLGN----------FSFVLVYFGSL 88
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
+ + +L + Y AVG S V G + + P L +F + +P
Sbjct: 89 IFGSLLTMLFHKNDYSY----RAVGASGAVTGVLYSAILLHPDMMLGIFFVIPIP 139
>gi|338731999|ref|YP_004670472.1| hypothetical protein SNE_A01030 [Simkania negevensis Z]
gi|336481382|emb|CCB87981.1| hypothetical protein SNE_A01030 [Simkania negevensis Z]
Length = 336
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 42 SYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG 78
SYE + G WR++TS F HI ++HL+ NM AL+S+G
Sbjct: 40 SYEV-LSGEWWRLLTSLFIHIGLIHLLVNMYALFSMG 75
>gi|419698307|ref|ZP_14226024.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni LMG
23211]
gi|380675469|gb|EIB90372.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni LMG
23211]
Length = 170
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 23/153 (15%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
+G +W++++S F H ++ HL+ NM L+ G + + Y + + G L
Sbjct: 33 NGAYWQLLSSMFLHGNLTHLILNMIVLFQFGRILE--------TYLGALRFIFIYFIGGL 84
Query: 108 VLGIYHLLIQRFKLEYF-RRVTAVGYS---CVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
+ + + F +YF + +G S CV+ G+ +L K + L + L +S
Sbjct: 85 LCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVLD-KNSTKGLIV---AILLMS 140
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
FAP ++ ++ GH+ G + GY +A
Sbjct: 141 FAPL-------LMGVNVAWYGHIFGFMCGYILA 166
>gi|430745812|ref|YP_007204941.1| hypothetical protein Sinac_5094 [Singulisphaera acidiphila DSM
18658]
gi|430017532|gb|AGA29246.1| putative membrane protein [Singulisphaera acidiphila DSM 18658]
Length = 306
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 13 PATSCIIGICSVIWFY---IQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVF 69
PAT II I +++F +Q + + + S G+ W+++T+ F H V HL++
Sbjct: 24 PATKAIIVINVIVFFLQPILQDRGLWNYFIASSDGIFRHGYVWQLLTATFMHAGVYHLLW 83
Query: 70 NMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
NM LW +G + + GT ++ + L VLS L
Sbjct: 84 NMVFLWMVG---REMESFYGTRDFVAFYLCAAVLSTL 117
>gi|86150752|ref|ZP_01068968.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni 260.94]
gi|86152434|ref|ZP_01070639.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|121613089|ref|YP_001000682.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni 81-176]
gi|157415260|ref|YP_001482516.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni 81116]
gi|315124491|ref|YP_004066495.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|317511467|ref|ZP_07968787.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni 305]
gi|419634752|ref|ZP_14167079.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni 55037]
gi|419669092|ref|ZP_14198888.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni
1997-11]
gi|419682850|ref|ZP_14211569.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni 1213]
gi|419693747|ref|ZP_14221731.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni LMG
9872]
gi|85841922|gb|EAQ59168.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni 260.94]
gi|85843319|gb|EAQ60529.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|87249191|gb|EAQ72152.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni 81-176]
gi|157386224|gb|ABV52539.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni 81116]
gi|315018213|gb|ADT66306.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|315929037|gb|EFV08277.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni 305]
gi|380614046|gb|EIB33495.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni 55037]
gi|380647963|gb|EIB64846.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni
1997-11]
gi|380660861|gb|EIB76795.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni 1213]
gi|380672368|gb|EIB87541.1| rhomboid family protein [Campylobacter jejuni subsp. jejuni LMG
9872]
Length = 172
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 23/153 (15%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
+G +W++++S F H ++ HL+ NM L+ G + + Y + + G L
Sbjct: 33 NGAYWQLLSSMFLHGNLTHLILNMIVLFQFGRILE--------TYLGALRFIFIYFIGGL 84
Query: 108 VLGIYHLLIQRFKLEYF-RRVTAVGYS---CVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
+ + + F +YF + +G S CV+ G+ +L K + L + L +S
Sbjct: 85 LCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVLD-KNSTKGLIV---AILLMS 140
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
FAP ++ ++ GH+ G + GY +A
Sbjct: 141 FAPL-------LMGVNVAWYGHIFGFMCGYILA 166
>gi|229916284|ref|YP_002884930.1| rhomboid family protein [Exiguobacterium sp. AT1b]
gi|229467713|gb|ACQ69485.1| Rhomboid family protein [Exiguobacterium sp. AT1b]
Length = 350
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQL 83
G WR+IT F HI H NM ALWSLG +VE++
Sbjct: 184 QGEWWRLITPMFLHIGWFHFAINMFALWSLGPLVERM 220
>gi|21243475|ref|NP_643057.1| hypothetical protein XAC2748 [Xanthomonas axonopodis pv. citri str.
306]
gi|21109033|gb|AAM37593.1| integral membrane protein [Xanthomonas axonopodis pv. citri str.
306]
Length = 253
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W+++T AF H HL FNM AL+ G +EQ G +L Y LV V +GL
Sbjct: 85 WQLLTYAFLHGGFNHLFFNMLALFMFGAPLEQT----WGQKRFLTYYLVCVAGAGLC--- 137
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP-------IS 163
LL+ F VG S VFG + + P+ ++ L F +P I
Sbjct: 138 --QLLMAWFTQS---GAPVVGASGGVFGLLLAYGMLFPNQRVMLL-FPPIPMKARTFVIV 191
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGY 193
F E L+ + P + HL G++ G+
Sbjct: 192 FGAIELLLGATGWQPGVAHFAHLGGMLFGW 221
>gi|282853343|ref|ZP_06262680.1| peptidase, S54 (rhomboid) family protein [Propionibacterium acnes
J139]
gi|282582796|gb|EFB88176.1| peptidase, S54 (rhomboid) family protein [Propionibacterium acnes
J139]
Length = 302
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 15 TSCIIGICSVIWF------YIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSH-ISVLHL 67
T +IGIC ++W + + + VG + WR +TS F H +S+ H+
Sbjct: 91 TWTLIGICFLVWVGEWLSPQVGEAVVLAPRVGFT-------EPWRFVTSMFGHALSIFHI 143
Query: 68 VFNMSALWSLG 78
FNM ALW+LG
Sbjct: 144 GFNMYALWALG 154
>gi|340350406|ref|ZP_08673398.1| rhomboid family protein [Prevotella nigrescens ATCC 33563]
gi|339608484|gb|EGQ13379.1| rhomboid family protein [Prevotella nigrescens ATCC 33563]
Length = 319
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 33/181 (18%)
Query: 39 VGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTL 98
+GL + A D H W++IT F H S +H++ NM LW G+V + +V G+ +L Y +
Sbjct: 36 LGLHFFLADDFHLWQLITYMFMHGSFMHILMNMFMLWMFGMV--MENV-WGSKKFLFYYI 92
Query: 99 VLVVLSGLLV------------LGIYHLL---IQRFKLE-YFRRVTAVGYSCVVFGWMTI 142
V V +GL L Y + + R ++ Y T VG S V+G +
Sbjct: 93 VTGVGAGLCQELAQYATYMAEGLSRYQYVATEMGRIPMDAYLNLWTTVGASGAVYGVLLA 152
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLG----------HLSGIIVG 192
+ P+ ++ + + +PI + +I SI + S +G HL G++ G
Sbjct: 153 FGLTFPNERMFI---IPIPIPLKA-KWIIMGSIAMELLSAMGTSNDGVAHLAHLGGMLFG 208
Query: 193 Y 193
Y
Sbjct: 209 Y 209
>gi|325927371|ref|ZP_08188621.1| uncharacterized membrane protein [Xanthomonas perforans 91-118]
gi|325542259|gb|EGD13751.1| uncharacterized membrane protein [Xanthomonas perforans 91-118]
Length = 253
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W+++T AF H HL FNM AL+ G +EQ G +L Y LV V +GL
Sbjct: 85 WQLLTYAFLHGGFNHLFFNMLALFMFGAPLEQT----WGQKRFLTYYLVCVAGAGLC--- 137
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP-------IS 163
LL+ F VG S VFG + + P+ ++ L F +P I
Sbjct: 138 --QLLMAWFTQS---GAPVVGASGGVFGLLLAYGMLFPNQRVMLL-FPPIPMKARTFVIV 191
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGY 193
F E L+ + P + HL G++ G+
Sbjct: 192 FGAIELLLGATGWQPGVAHFAHLGGMLFGW 221
>gi|332881401|ref|ZP_08449051.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357045184|ref|ZP_09106821.1| peptidase, S54 family [Paraprevotella clara YIT 11840]
gi|332680777|gb|EGJ53724.1| peptidase, S54 family [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355531767|gb|EHH01163.1| peptidase, S54 family [Paraprevotella clara YIT 11840]
Length = 306
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 23/181 (12%)
Query: 39 VGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTL 98
+GL + A D + ++ T F H V H++FNM A+W G V + G +L Y +
Sbjct: 36 LGLHFFLAPDFNFYQFFTYMFMHGGVTHILFNMFAVWMFGRVME---SYWGGRRFLLYYV 92
Query: 99 VLVVLSGLLVLGIYHL--LIQRFKL--------------EYFRRVTAVGYSCVVFGWMTI 142
V + +GL+ G+ ++ L Q +Y R T +G S V+G +
Sbjct: 93 VCGLGAGLVQEGVQYIQYLWQGLGAYDTVNIGYTVISMGDYLNRWTTIGASGAVYGILLA 152
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHG 202
+ P+ +L +F L +PI A F + ++ S LG+ + +A G+I G
Sbjct: 153 FGMSFPNERLFIFP-LPVPIK-AKF--FVIGYAVIELLSALGNSGDGVAHFAHLGGMIFG 208
Query: 203 M 203
+
Sbjct: 209 L 209
>gi|120596880|ref|YP_961454.1| rhomboid family protein [Shewanella sp. W3-18-1]
gi|386311839|ref|YP_006008004.1| rhomboid protease [Shewanella putrefaciens 200]
gi|120556973|gb|ABM22900.1| Rhomboid family protein [Shewanella sp. W3-18-1]
gi|319424464|gb|ADV52538.1| Rhomboid protease [Shewanella putrefaciens 200]
Length = 281
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 37/193 (19%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHV---GLSYETAVD----GHHWRIITSAFSHISVL 65
P T + +C +I+ N+G+++ LSY AV WR+ T + H S +
Sbjct: 98 PVTLIVFAVCVLIF---AAMNLGFANPIYETLSYFGAVSQSDLSQFWRVFTPSLLHFSAM 154
Query: 66 HLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEY 123
H++FN+ W LG + ++G L L+L+ ++G L +++
Sbjct: 155 HVIFNLLWWWYLGGRIETRIGTTPL---------LILLFMAGTLP----NIIQYYVSGPN 201
Query: 124 FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE----SLIFTSIIVPQ 179
F ++ V Y+ V + W I+ +++P++ + LP ++ F +L FT I+
Sbjct: 202 FGGLSGVVYAVVGYTW--IMGIRKPAAG------IGLPPAYMGFMMIWLALGFTDILGVS 253
Query: 180 ASFLGHLSGIIVG 192
+ H+ G+ +G
Sbjct: 254 VANGAHIGGLFIG 266
>gi|403387738|ref|ZP_10929795.1| membrane associated peptidase [Clostridium sp. JC122]
Length = 216
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQL 83
+G ++R+ T+ F H SVLHL NM AL ++G +VE++
Sbjct: 66 NGEYYRLFTAGFLHASVLHLTLNMIALNAIGSIVEKV 102
>gi|419800122|ref|ZP_14325427.1| peptidase, S54 family [Streptococcus parasanguinis F0449]
gi|385696180|gb|EIG26685.1| peptidase, S54 family [Streptococcus parasanguinis F0449]
Length = 225
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 23/149 (15%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
WRI+T+ F HI + H V NM L+ LG +L + G+ +L L +LSG++
Sbjct: 59 WRIVTATFVHIGLEHFVLNMITLYYLG---RLAEDLFGSKAFLA----LYLLSGMMG--- 108
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
++ + F + V A G S +FG + + + LS + SLI
Sbjct: 109 -NVFVAIFTPD----VIAAGASTALFGLFGTIGALRFIVQSPYIRHLS-----QSYTSLI 158
Query: 172 FTSII---VPQASFLGHLSGIIVGYAIAW 197
++I +P S GH+ G++ G +A+
Sbjct: 159 VVNLIFSFMPGISMAGHIGGLVAGLMLAY 187
>gi|109896395|ref|YP_659650.1| rhomboid-like protein [Pseudoalteromonas atlantica T6c]
gi|109698676|gb|ABG38596.1| Rhomboid-like protein [Pseudoalteromonas atlantica T6c]
Length = 292
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 14/95 (14%)
Query: 47 VDGHHW-RIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLS 104
++ H W R+I A H SVLH+VFN+ W+L G +E+L LG + TL+++ LS
Sbjct: 142 MENHQWWRLIGPALIHFSVLHIVFNLLWWWTLGGQIERL----LG-----KTTLIILFLS 192
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGW 139
L+ + LL+ E+F ++ V Y+ V W
Sbjct: 193 SALLSNVGQLLVSG---EHFGGLSGVVYALVGCVW 224
>gi|294625501|ref|ZP_06704129.1| integral membrane protein [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294664007|ref|ZP_06729420.1| integral membrane protein [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292600170|gb|EFF44279.1| integral membrane protein [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292606221|gb|EFF49459.1| integral membrane protein [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 253
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W+++T AF H HL FNM AL+ G +EQ G +L Y LV V +GL
Sbjct: 85 WQLLTYAFLHGGFNHLFFNMLALFMFGAPLEQT----WGQKRFLTYYLVCVAGAGLC--- 137
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP-------IS 163
LL+ F VG S VFG + + P+ ++ L F +P I
Sbjct: 138 --QLLMAWFTQS---GAPVVGASGGVFGLLLAYGMLFPNQRVMLL-FPPIPMKARTFVIV 191
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGY 193
F E L+ + P + HL G++ G+
Sbjct: 192 FGAIELLLGATGWQPGVAHFAHLGGMLFGW 221
>gi|212692209|ref|ZP_03300337.1| hypothetical protein BACDOR_01705 [Bacteroides dorei DSM 17855]
gi|212665086|gb|EEB25658.1| peptidase, S54 family [Bacteroides dorei DSM 17855]
Length = 225
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 48/188 (25%)
Query: 39 VGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYT 97
+GL + A D + ++IT F H H+ FNM ALW G +EQ+ G +L Y
Sbjct: 36 LGLHFFMASDFNPAQLITYMFMHGGFQHIFFNMFALWMFGRTLEQV----WGPKRFLFYY 91
Query: 98 LVLVVLSGLLVLGIYHLLIQRFKL--------------------EYFRRVTAVGYSCVVF 137
+V + +GL+ L+Q + EY +T VG S ++
Sbjct: 92 MVCGIGAGLV-----QELVQYIQYVTELSQYDSVNTGIAVIPMAEYLNLMTTVGASGAIY 146
Query: 138 GWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLG------------H 185
G + + P+S++ +F PI F P + F FLG H
Sbjct: 147 GILLAFGMLFPNSQMFVF-----PIPF-PVRAKYFVMGYAALEIFLGLGASTDGVAHFAH 200
Query: 186 LSGIIVGY 193
L G+I G+
Sbjct: 201 LGGMIFGF 208
>gi|419959390|ref|ZP_14475444.1| intramembrane serine protease GlpG [Enterobacter cloacae subsp.
cloacae GS1]
gi|388605673|gb|EIM34889.1| intramembrane serine protease GlpG [Enterobacter cloacae subsp.
cloacae GS1]
Length = 276
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 4 PLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLS----YETAVDGHHWRIITSAF 59
P + E+ ++ + + I +I +G V ++ Y+ ++ WR T A
Sbjct: 84 PFLATLRERAGPFTLLLMVACIIVFIIMSVVGDQSVMIALAWPYDPSLQFDVWRYFTHAL 143
Query: 60 SHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR 118
H SV+H++FN+ W L G VE+ LG+ + TL+ +LSG + +
Sbjct: 144 MHFSVMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ--------HK 191
Query: 119 FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
F +F ++ V Y+ + + W+ + P S
Sbjct: 192 FSGPWFGGLSGVVYALMGYAWLR--GERDPDS 221
>gi|78048457|ref|YP_364632.1| rhomboid family membrane protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78036887|emb|CAJ24580.1| Rhomboid family membrane protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 231
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W+++T AF H HL FNM AL+ G +EQ G +L Y LV V +GL
Sbjct: 63 WQLLTYAFLHGGFNHLFFNMLALFMFGAPLEQT----WGQKRFLTYYLVCVAGAGLC--- 115
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP-------IS 163
LL+ F VG S VFG + + P+ ++ L F +P I
Sbjct: 116 --QLLMAWFTQS---GAPVVGASGGVFGLLLAYGMLFPNQRVMLL-FPPIPMKARTFVIV 169
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGY 193
F E L+ + P + HL G++ G+
Sbjct: 170 FGAIELLLGATGWQPGVAHFAHLGGMLFGW 199
>gi|157149004|ref|YP_001456323.1| intramembrane serine protease GlpG [Citrobacter koseri ATCC
BAA-895]
gi|172045594|sp|A8AQX4.1|GLPG_CITK8 RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|157086209|gb|ABV15887.1| hypothetical protein CKO_04842 [Citrobacter koseri ATCC BAA-895]
Length = 276
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 25/159 (15%)
Query: 43 YETAVDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLV 101
++ ++ WR T AF H S++H++FN+ W + G VE+ LG+ + T++
Sbjct: 127 FDPSLKFEFWRYFTHAFMHFSLMHILFNLLWWWYIGGAVEKR----LGSGKLIVITVISA 182
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS----KLDLFGF 157
+LSG + Q+F +F ++ V Y+ + + W+ + P S + L F
Sbjct: 183 LLSGYVQ--------QKFSGPWFGGLSGVVYALMGYAWLR--GERDPQSGIYLQRGLIAF 232
Query: 158 LSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
+ I F+ +F + A H++G+ VG A+A
Sbjct: 233 ALIWIVAGWFD--VFGMSMANGA----HIAGLAVGLAMA 265
>gi|383821590|ref|ZP_09976832.1| hypothetical protein MPHLEI_19664 [Mycobacterium phlei RIVM601174]
gi|383332932|gb|EID11395.1| hypothetical protein MPHLEI_19664 [Mycobacterium phlei RIVM601174]
Length = 248
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 11 EKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAV-DGHHWRIITSAFSHISVLHLVF 69
KP + + +V+ F +Q G++ + AV DG +R++TSAF H + H++F
Sbjct: 34 AKPTVTYTLIAVNVLVFLLQAVLPGFTREFVLQPYAVADGEFYRLLTSAFLHYGLTHILF 93
Query: 70 NMSALWSLG 78
NM AL+ +G
Sbjct: 94 NMWALYVVG 102
>gi|408790096|ref|ZP_11201729.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
florum 2F]
gi|408520670|gb|EKK20705.1| GlpG protein (membrane protein of glp regulon) [Lactobacillus
florum 2F]
Length = 222
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 24/153 (15%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
G WR++T F HI + HL+ N L+ +G ++E+ T + +Y LVL + SG+
Sbjct: 55 GQWWRLVTPIFLHIGLQHLLLNCLTLFYVGNLLEK-------TVGHFRY-LVLFLGSGI- 105
Query: 108 VLGIYHLLIQRFKLEYFR--RVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165
L F V + G S +FG + + + + +L I+FA
Sbjct: 106 ----------GGNLFSFAAGNVISAGSSTAIFGLLGVFLMLSLVVRGNLL-ITETGITFA 154
Query: 166 PFESL-IFTSIIVPQASFLGHLSGIIVGYAIAW 197
F L + T VPQ GHL G++ G+ +A+
Sbjct: 155 VFVGLNLLTDFFVPQIDIWGHLGGLLTGFCLAF 187
>gi|154249662|ref|YP_001410487.1| rhomboid family protein [Fervidobacterium nodosum Rt17-B1]
gi|154153598|gb|ABS60830.1| Rhomboid family protein [Fervidobacterium nodosum Rt17-B1]
Length = 224
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 15 TSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNMSA 73
S I+ I V + K ++ Y G Y + W RIIT+ F H LHL FNM A
Sbjct: 16 NSLILLIFYVFKTFFIKSDLAYLLFGAQYGPLIKSGQWYRIITAMFMHGGFLHLAFNMYA 75
Query: 74 LWSLG 78
L+ +G
Sbjct: 76 LYIIG 80
>gi|381171870|ref|ZP_09881009.1| rhomboid family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|390993222|ref|ZP_10263409.1| rhomboid family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|418516431|ref|ZP_13082605.1| hypothetical protein MOU_06431 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|418519737|ref|ZP_13085789.1| hypothetical protein WS7_01710 [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|372552048|emb|CCF70384.1| rhomboid family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|380687699|emb|CCG37496.1| rhomboid family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|410705181|gb|EKQ63660.1| hypothetical protein WS7_01710 [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410706970|gb|EKQ65426.1| hypothetical protein MOU_06431 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 231
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W+++T AF H HL FNM AL+ G +EQ G +L Y LV V +GL
Sbjct: 63 WQLLTYAFLHGGFNHLFFNMLALFMFGAPLEQT----WGQKRFLTYYLVCVAGAGLC--- 115
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP-------IS 163
LL+ F VG S VFG + + P+ ++ L F +P I
Sbjct: 116 --QLLMAWFTQS---GAPVVGASGGVFGLLLAYGMLFPNQRVMLL-FPPIPMKARTFVIV 169
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGY 193
F E L+ + P + HL G++ G+
Sbjct: 170 FGAIELLLGATGWQPGVAHFAHLGGMLFGW 199
>gi|260063473|ref|YP_003196553.1| hypothetical protein RB2501_01655 [Robiginitalea biformata
HTCC2501]
gi|88782917|gb|EAR14091.1| hypothetical protein RB2501_01655 [Robiginitalea biformata
HTCC2501]
Length = 250
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 90/224 (40%), Gaps = 53/224 (23%)
Query: 36 YSHVGLSYETAVDGHHWRIITSAFSH--ISVLHLVFNMSALWSLGV-VEQLG-------- 84
Y + L Y + W+I++ F H + +H++FNM ALW+ G +E++
Sbjct: 30 YDWLALWYPENPNFSIWQIVSHMFMHSNQTFMHILFNMYALWAFGSPLERMWGTRKFLFF 89
Query: 85 --DVGLGTA--------YYLQYTLVLVVLSG--------LLVLGIYHL---------LIQ 117
GLG A Y++ + +V +G LL G Y+ ++
Sbjct: 90 YFSAGLGAALIHSGVNYYHVHQGVEALVSAGASESEIMNLLAQGKYNEGWAQMAPGDVVS 149
Query: 118 RFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS---FAP-------F 167
R YF AVG S ++G + + P+S+L L FL +PI F P F
Sbjct: 150 RMLESYF--TPAVGASGAIYGILVAFGMSFPNSELFLI-FLPIPIKAKYFIPVLIAIDLF 206
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGM--NNYWAL 209
L SI + H+ G I G+ + W NN W L
Sbjct: 207 SGLTGYSIFGAGIAHFAHVGGAIFGFLMMWYWKQNQFNNNRWDL 250
>gi|326772824|ref|ZP_08232108.1| rhomboid family protein [Actinomyces viscosus C505]
gi|326637456|gb|EGE38358.1| rhomboid family protein [Actinomyces viscosus C505]
Length = 284
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 15 TSCIIGICSVIW---FYIQKKNIGYSHVGLSYETAVDGHH-WRIITSAFSHISVLHLVFN 70
T ++G+C V++ I + + + L + A+ WR +T+AF H + +HL FN
Sbjct: 77 TKILVGLCVVVYALQVLIPEVTMQSLELRLGFVPALAASEPWRFLTTAFLHANYMHLGFN 136
Query: 71 MSALWSLG 78
M ALW LG
Sbjct: 137 MWALWVLG 144
>gi|346725572|ref|YP_004852241.1| integral membrane protein [Xanthomonas axonopodis pv. citrumelo F1]
gi|346650319|gb|AEO42943.1| integral membrane protein [Xanthomonas axonopodis pv. citrumelo F1]
Length = 231
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W+++T AF H HL FNM AL+ G +EQ G +L Y LV V +GL
Sbjct: 63 WQLLTYAFLHGGFNHLFFNMLALFMFGAPLEQT----WGQKRFLTYYLVCVAGAGLC--- 115
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP-------IS 163
LL+ F VG S VFG + + P+ ++ L F +P I
Sbjct: 116 --QLLMAWFTQS---GAPVVGASGGVFGLLLAYGMLFPNQRVMLL-FPPIPMKARTFVIV 169
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGY 193
F E L+ + P + HL G++ G+
Sbjct: 170 FGAIELLLGATGWQPGVAHFAHLGGMLFGW 199
>gi|433460288|ref|ZP_20417921.1| S54 family peptidase [Halobacillus sp. BAB-2008]
gi|432191744|gb|ELK48676.1| S54 family peptidase [Halobacillus sp. BAB-2008]
Length = 253
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 83/199 (41%), Gaps = 39/199 (19%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVD-----GHHWRIITSAFSHISVLHL 67
P S ++G+ V+W + +G++ ++ V+ G +WR++T F H H
Sbjct: 16 PVISFLVGLHLVLWLLMDFLQLGFAQEWKAWGMGVNVFVLNGEYWRLVTPIFLHAGFAHA 75
Query: 68 VFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRR 126
+FN +L G +EQ+ LG ++ L + + F ++
Sbjct: 76 LFNSFSLVLFGPALEQM----LGKVKFIALYLFAGIAGN----------VGTFIVDPSAY 121
Query: 127 VTAVGYSCVVFG---------WMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIV 177
+G S +FG W + Q +S++ + + ++ +F + +
Sbjct: 122 YAHLGASGAIFGIFGVYIFMVWNRKHLIDQANSQI-----IGVIVALG-----LFMTFVR 171
Query: 178 PQASFLGHLSGIIVGYAIA 196
P + LGHL G+I G+AIA
Sbjct: 172 PNINILGHLFGLIGGFAIA 190
>gi|56415432|ref|YP_152507.1| intramembrane serine protease GlpG [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197364362|ref|YP_002143999.1| intramembrane serine protease GlpG [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|81361720|sp|Q5PLZ8.1|GLPG_SALPA RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|226729487|sp|B5BHH5.1|GLPG_SALPK RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|56129689|gb|AAV79195.1| putative membrane protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197095839|emb|CAR61412.1| putative membrane protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 276
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 37/206 (17%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITS 57
P + E+ P T ++ C V+ YI IG V ++ + WR T
Sbjct: 84 PFLATLRERAGPVTWIVMLACVVV--YIAMSLIGDQTVMVWLAWPFDPVLKFEVWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
F H S++H++FN+ W L G VE+ LG+ + T++ +LSG +
Sbjct: 142 IFMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITVISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL------FGFLSLPISFAPFESL 170
Q+F +F ++ V Y+ + + W+ + P S + L F L + S+ + +
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQSGIYLQRGLIIFALLWIVASWFDWFGM 247
Query: 171 IFTSIIVPQASFLGHLSGIIVGYAIA 196
+ H++G+IVG A+A
Sbjct: 248 SMAN--------GAHIAGLIVGLAMA 265
>gi|154508338|ref|ZP_02043980.1| hypothetical protein ACTODO_00835 [Actinomyces odontolyticus ATCC
17982]
gi|153797972|gb|EDN80392.1| peptidase, S54 family [Actinomyces odontolyticus ATCC 17982]
Length = 231
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 69/153 (45%), Gaps = 17/153 (11%)
Query: 50 HHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
H W ++T AF H ++H++FNM +L+ +G +E + LG +L TL LV G
Sbjct: 50 HPWTVLTGAFLHGGIMHILFNMLSLYWVGRAIEPV----LGRWRFL--TLYLVSALGGSA 103
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE 168
+ LIQ E F V+ VG S VFG + V Q D L+L
Sbjct: 104 FILVWCLIQ--PSEIF--VSTVGASGAVFGLFGAVFVLQRLGGSDTTAILTL------LG 153
Query: 169 SLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
+ +V S+ GH+ G I G W L+H
Sbjct: 154 INLVYGFMVSGISWQGHIGGAIAGVCATWVLVH 186
>gi|320587469|gb|EFW99949.1| GPI transamidase component [Grosmannia clavigera kw1407]
Length = 921
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 13/144 (9%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQL-GDVGLGTAYYLQYTLVLVVLSGLLVLG 110
+R T F H+ H++FN+ AL L +E+ G+ G T+ L + L L +L
Sbjct: 84 YRTNTFPFVHLGFFHMLFNVVALTPL--LERFEGEHGTLTSVALFFG-PLSTLPAVL--- 137
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL-FGFLSLPISFAPFES 169
+++I+R T +G S VF + + +V+ + G + +P P
Sbjct: 138 --YVIIERV---LHLNTTIMGSSIWVFLLLGVEAVRMCRTHPSFAVGTVHVPTWTTPLAL 192
Query: 170 LIFTSIIVPQASFLGHLSGIIVGY 193
+ TS +VP AS LGHL G+ VGY
Sbjct: 193 VFVTSALVPHASLLGHLCGLAVGY 216
>gi|407451588|ref|YP_006723312.1| hypothetical protein B739_0812 [Riemerella anatipestifer RA-CH-1]
gi|403312573|gb|AFR35414.1| putative membrane protein [Riemerella anatipestifer RA-CH-1]
Length = 244
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 71/185 (38%), Gaps = 44/185 (23%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVV--EQLGDV---------GLGT-------AYY 93
W+IIT F H HL+FNM LWS G V LG+ GLG YY
Sbjct: 47 WQIITHMFMHGGFTHLLFNMIGLWSFGSVLERALGEKKYLILYFFSGLGAFILFNVWNYY 106
Query: 94 LQYTL----------VLVVLSG-------LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVV 136
Y L + V G L + I+ + +L+ F VG S +
Sbjct: 107 HFYQLTSSLHQQGVDLASVFRGANLNNPSLNIGAIFGRSDEVAQLQQFLITPMVGASGAI 166
Query: 137 FGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI--------FTSIIVPQASFLGHLSG 188
FG + +V P++ + + F+ PI +I FT + + HL G
Sbjct: 167 FGVLAAFAVAYPNAGIMIL-FIPFPIKAKILFPIIIAGSIYLGFTQMAGDNVAHFAHLGG 225
Query: 189 IIVGY 193
+VGY
Sbjct: 226 ALVGY 230
>gi|386286423|ref|ZP_10063613.1| rhomboid family protein [gamma proteobacterium BDW918]
gi|385280573|gb|EIF44495.1| rhomboid family protein [gamma proteobacterium BDW918]
Length = 286
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG 78
G WR+IT AF H ++H+VFN LW LG
Sbjct: 135 GELWRVITPAFLHFGLMHIVFNALWLWELG 164
>gi|325577118|ref|ZP_08147602.1| rhomboid protease GlpG [Haemophilus parainfluenzae ATCC 33392]
gi|325160700|gb|EGC72821.1| rhomboid protease GlpG [Haemophilus parainfluenzae ATCC 33392]
Length = 208
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 19/106 (17%)
Query: 9 IMEKPATSCIIGICSVIWFYIQKKNIGYS--------HVGLSYETAVDGHHWRIITSAFS 60
+ +K T + +C++I+ +NIG+ + S+E D WR T
Sbjct: 22 LRKKKITFILTALCALIYLL---QNIGFEEPIMDVFHYPAYSWE---DQEVWRYFTHTIV 75
Query: 61 HISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSG 105
H+SV H++FN+S W G +E+ LG+ Y+L LV ++G
Sbjct: 76 HLSVPHILFNLSWFWLFGGAIER----RLGSLYFLLLVLVSAAVTG 117
>gi|297199001|ref|ZP_06916398.1| rhomboid family protein [Streptomyces sviceus ATCC 29083]
gi|197711076|gb|EDY55110.1| rhomboid family protein [Streptomyces sviceus ATCC 29083]
Length = 305
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 9/52 (17%)
Query: 44 ETAVDGHHWRIITSAFSHI-------SVLHLVFNMSALWSLG-VVE-QLGDV 86
E VDG +R++T AF H+ +LH+V NM +LW++G VVE QLG +
Sbjct: 124 EGVVDGEWYRLLTGAFLHLPPTGGTFGILHIVMNMVSLWNIGRVVELQLGRI 175
>gi|390630603|ref|ZP_10258582.1| Membrane-associated serine protease [Weissella confusa LBAE
C39-2]
gi|390484160|emb|CCF30930.1| Membrane-associated serine protease [Weissella confusa LBAE
C39-2]
Length = 233
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 13/82 (15%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLS---YETAVD--------GHHWRIITSAFSH 61
PATS ++ V+ Y+ + I S S YET G WR++T+ F H
Sbjct: 13 PATSALVAFMVVV--YLWEALIAQSFTISSRVLYETGAQFGPIVLHYGEWWRLLTAGFLH 70
Query: 62 ISVLHLVFNMSALWSLGVVEQL 83
++ HL+FNM L+ +G + +L
Sbjct: 71 VTASHLIFNMITLYFIGRLLEL 92
>gi|384099337|ref|ZP_10000423.1| hypothetical protein W5A_11646 [Imtechella halotolerans K1]
gi|383832685|gb|EID72155.1| hypothetical protein W5A_11646 [Imtechella halotolerans K1]
Length = 215
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
G R+ +S F H+ HL+FNM L+ V++ LG + +LV ++ L
Sbjct: 41 GEQIRMFSSGFLHVDTAHLLFNMLTLYFFANVVIQDLG----------AFKFILVYVASL 90
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPI 162
++ ++ L + + Y +AVG S V G + + P+ L LF F+ +PI
Sbjct: 91 IIGSLFSLFFHKNEYHY----SAVGASGAVTGILYSAILLYPNMSLYLF-FIPIPI 141
>gi|228469447|ref|ZP_04054455.1| rhomboid family protein [Porphyromonas uenonis 60-3]
gi|228309022|gb|EEK17665.1| rhomboid family protein [Porphyromonas uenonis 60-3]
Length = 240
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 16/139 (11%)
Query: 39 VGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYT 97
+GL Y TA D H W+ I+ F H S HL FNM AL+ G +E+ +YL
Sbjct: 44 LGLHYVTAHDFHVWQPISYMFLHGSFTHLFFNMFALFMFGTTIERTWGAKRFLLFYLVCG 103
Query: 98 LVLVVLSGLLVLGI--------YHLLI----QRFKLEYF-RRVTAVGYSCVVFGWMTILS 144
L LS LV G+ Y ++ R +F ++ +G S VFG +
Sbjct: 104 LT-AALSQELVWGLTTVREVAGYDVVAFPDGSRMATAFFVNQLLTIGASGAVFGLLLAFG 162
Query: 145 VKQPSSKLDLFGFLSLPIS 163
P++ + LF F+ +PI
Sbjct: 163 WLYPNAAIYLF-FIPIPIK 180
>gi|160891547|ref|ZP_02072550.1| hypothetical protein BACUNI_03999 [Bacteroides uniformis ATCC 8492]
gi|270295353|ref|ZP_06201554.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317478349|ref|ZP_07937513.1| rhomboid family protein [Bacteroides sp. 4_1_36]
gi|423304703|ref|ZP_17282702.1| hypothetical protein HMPREF1072_01642 [Bacteroides uniformis
CL03T00C23]
gi|423310183|ref|ZP_17288167.1| hypothetical protein HMPREF1073_02917 [Bacteroides uniformis
CL03T12C37]
gi|156858954|gb|EDO52385.1| peptidase, S54 family [Bacteroides uniformis ATCC 8492]
gi|270274600|gb|EFA20461.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316905508|gb|EFV27298.1| rhomboid family protein [Bacteroides sp. 4_1_36]
gi|392682379|gb|EIY75724.1| hypothetical protein HMPREF1073_02917 [Bacteroides uniformis
CL03T12C37]
gi|392683367|gb|EIY76702.1| hypothetical protein HMPREF1072_01642 [Bacteroides uniformis
CL03T00C23]
Length = 227
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 29/181 (16%)
Query: 37 SHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQ 95
++GL + A D + ++IT F H H+ FNM A+W G ++EQ+ G +L
Sbjct: 34 QYLGLHFFLAEDFNAAQLITYMFMHAGFAHIFFNMFAVWMFGRILEQV----WGPKRFLF 89
Query: 96 YTLVLVVLSGLL-----------VLGIYHLLIQRFKL----EYFRRVTAVGYSCVVFGWM 140
Y LV + +G++ VL Y + + EY +T VG S V+ +
Sbjct: 90 YYLVCGIGAGIIQEVVQYIHYETVLSAYDSVNTGMAIIPMEEYLNMMTTVGASGAVYAIL 149
Query: 141 TILSVKQPSSKLDLFGFLSLPISFAPF---ESLI-----FTSIIVPQASFLGHLSGIIVG 192
+ P+ ++ +F L +PI F +LI F + + HL G++ G
Sbjct: 150 LAFGMLFPNQQMFIFP-LPVPIKAKYFVIGYALIELYAGFANSAGDNVAHFAHLGGMVFG 208
Query: 193 Y 193
+
Sbjct: 209 F 209
>gi|409392616|ref|ZP_11244170.1| hypothetical protein GORBP_101_00320 [Gordonia rubripertincta NBRC
101908]
gi|403197559|dbj|GAB87404.1| hypothetical protein GORBP_101_00320 [Gordonia rubripertincta NBRC
101908]
Length = 241
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 12 KP-ATSCIIGICSVIWFY--IQKKNIG-------YSHVGLSYETAVDGHHWRIITSAFSH 61
KP T +IGI +I+ +Q + G +S L G +WR++TS F H
Sbjct: 13 KPYVTYTLIGINILIFLLCAVQAGSFGDPGAAAIFSSGDLLKSDVAAGEYWRLLTSGFLH 72
Query: 62 ISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLV 99
SV+H+ NM +L+ LG +L LG + Y+ L+
Sbjct: 73 FSVMHVAVNMLSLYILGRDLEL---ALGMSRYVAVYLI 107
>gi|387880413|ref|YP_006310716.1| rhomboid family membrane protein [Streptococcus parasanguinis
FW213]
gi|386793861|gb|AFJ26896.1| rhomboid family membrane protein [Streptococcus parasanguinis
FW213]
Length = 225
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 23/149 (15%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
WRI+T+ F HI + H V NM L+ LG +L + G+ +L L +LSG++
Sbjct: 59 WRIVTATFVHIGLEHFVLNMITLYYLG---RLAEDLFGSKAFLA----LYLLSGMMG--- 108
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
++ + F + V A G S +FG + + + LS + SLI
Sbjct: 109 -NVFVAIFTPD----VIAAGASTALFGLFGTIGALRFIVQSPYIRHLS-----QSYTSLI 158
Query: 172 FTSII---VPQASFLGHLSGIIVGYAIAW 197
++I +P S GH+ G++ G +A+
Sbjct: 159 VVNLIFSFMPGISMSGHIGGLVAGVMLAY 187
>gi|359406802|ref|ZP_09199455.1| peptidase, S54 family [Prevotella stercorea DSM 18206]
gi|357554895|gb|EHJ36590.1| peptidase, S54 family [Prevotella stercorea DSM 18206]
Length = 310
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 75/182 (41%), Gaps = 32/182 (17%)
Query: 39 VGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYT 97
+GL + A D H +++ T F+H H+ FNM ALW G +VE+ G +L Y
Sbjct: 36 LGLHFFLAPDFHIYQLFTYMFAHGGFSHIFFNMFALWMFGCIVERT----WGPKKFLTYY 91
Query: 98 LVLVVLSGL---LVLGIYHLLIQRFKLEYFRRV----------------TAVGYSCVVFG 138
+V V +GL L I +L +F T VG S V+G
Sbjct: 92 IVCGVGAGLFQELAQFAQFYFIASEQLPHFTLAQTMKVANANAAFLNLWTTVGASGAVYG 151
Query: 139 WMTILSVKQPSSKLDLFGFLSLPIS-------FAPFESLIFTSIIVPQASFLGHLSGIIV 191
+ + P ++ +F L +PI +A E + S + L HL G++
Sbjct: 152 ILLAFGMLYPEERIFIFP-LPVPIKAKWFVMGYAAIELFMAYSSTGDGVAHLAHLGGMVF 210
Query: 192 GY 193
G+
Sbjct: 211 GF 212
>gi|354725547|ref|ZP_09039762.1| intramembrane serine protease GlpG [Enterobacter mori LMG 25706]
Length = 276
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 19/156 (12%)
Query: 4 PLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLS----YETAVDGHHWRIITSAF 59
P I E+ ++ + + I +I +G V ++ Y+ ++ WR T A
Sbjct: 84 PFLATIRERAGPFTLLLMAACIIVFIIMNVVGDQSVMIALAWPYDPSLQFDVWRYFTHAL 143
Query: 60 SHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQR 118
H SV+H++FN+ W L G+VE+ LG+ + T++ +LSG + +
Sbjct: 144 MHFSVMHILFNLLWWWYLGGIVEKR----LGSGKLIVITIISALLSGYVQ--------HK 191
Query: 119 FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
F +F ++ V Y+ + + W+ + P S + L
Sbjct: 192 FSGPWFGGLSGVVYALMGYVWLR--GERDPESGIYL 225
>gi|291455745|ref|ZP_06595135.1| peptidase, S54 family [Bifidobacterium breve DSM 20213 = JCM 1192]
gi|291382673|gb|EFE90191.1| peptidase, S54 family [Bifidobacterium breve DSM 20213 = JCM 1192]
Length = 246
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 99/229 (43%), Gaps = 38/229 (16%)
Query: 15 TSCIIGICSVIW-------FYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHI--SVL 65
T +I C+ +W F + G+ + W I+TS F H S+L
Sbjct: 21 TWALIAACTAVWLVEVLLGFLSPTLQNWLIYRGMLAPATMLAEPWAIVTSMFLHAPNSIL 80
Query: 66 HLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLV--LVVLSGLLVLGIYHLLIQRFKLE 122
H++FNM AL+S+G V+E+L +G +L ++ L G++V + Q ++
Sbjct: 81 HILFNMIALYSVGPVLERL----IGHWRFLGLYMISGLGGALGMMVWAVVAPGGQSWQ-- 134
Query: 123 YFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL-SLPISFA-PFESLIFTSIIVPQA 180
A G S +FG L V D+ L + ++FA PF +V
Sbjct: 135 ----TAAYGASGALFGLFAALLVVYRRIGADIRSMLIWMAVNFALPF--------VVGGV 182
Query: 181 SFLGHLSGIIVGYAIAWGLIHGMNNY------WALSMLGWIVLVFVYSL 223
++ H+ G +VG + W LI G+ + W + + GW V V V +L
Sbjct: 183 AWQAHVGGFVVGGLLTWLLIGGIRPWRGKSLAWRMQVYGWSVTVLVIAL 231
>gi|85093939|ref|XP_959792.1| rhomboid protein 2 [Neurospora crassa OR74A]
gi|74615719|sp|Q7S4V5.1|RBD2_NEUCR RecName: Full=Rhomboid protein 2
gi|28921246|gb|EAA30556.1| rhomboid protein 2 [Neurospora crassa OR74A]
Length = 276
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVL---SGLLV 108
+RI T F H+++ H + N+ A L L + TL V L +
Sbjct: 72 YRINTFPFIHLNIFHTILNIVAFTPL----------LERFEHEHGTLTSVALFFGPFATI 121
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQ-PSSKLDLFGFLSLPISFAPF 167
G+ ++ ++RF L +G S VF + + +++ ++ ++P P
Sbjct: 122 PGLIYVFVERFILH--ANTPVMGASMWVFLLLGMEAIRTYKTNPYFTISTYNIPTWITPL 179
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
++ T+ ++P +SFLGHL+G++VGY G
Sbjct: 180 LLVVVTAALLPSSSFLGHLAGLLVGYGFGLG 210
>gi|335039938|ref|ZP_08533080.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
gi|334180182|gb|EGL82805.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
Length = 253
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 13 PATSCIIGICSVIWFYIQKKNIG----YSHVGLSYETAVDGHHWRIITSAFSHISVLHLV 68
P + +I I +V++ I+ IG Y VG + A+ G +WR++T F H ++H +
Sbjct: 16 PVVTALIAINTVLFVLIRFPGIGDMIRYYGVGQNLAIAM-GEYWRLVTPIFLHYRLMHFL 74
Query: 69 FNMSAL 74
FN AL
Sbjct: 75 FNSFAL 80
>gi|337282820|ref|YP_004622291.1| rhomboid family protein [Streptococcus parasanguinis ATCC 15912]
gi|335370413|gb|AEH56363.1| rhomboid family protein [Streptococcus parasanguinis ATCC 15912]
Length = 225
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 23/149 (15%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
WRI+T+ F HI + H V NM L+ LG +L + G+ +L L +LSG++
Sbjct: 59 WRIVTATFVHIGLEHFVLNMITLYYLG---RLAEDLFGSKAFLA----LYLLSGMMG--- 108
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
++ + F + V A G S +FG + + + LS + SLI
Sbjct: 109 -NVFVAIFTPD----VIAAGASTALFGLFGTIGALRFIVQSPYIRHLS-----QSYTSLI 158
Query: 172 FTSII---VPQASFLGHLSGIIVGYAIAW 197
++I +P S GH+ G++ G +A+
Sbjct: 159 VVNLIFSFMPGISMSGHIGGLVAGVMLAY 187
>gi|88811636|ref|ZP_01126890.1| cytoplasmic membrane protein [Nitrococcus mobilis Nb-231]
gi|88791027|gb|EAR22140.1| cytoplasmic membrane protein [Nitrococcus mobilis Nb-231]
Length = 208
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 20/164 (12%)
Query: 41 LSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLV 99
L A H W++++ AF H S+LHL NM ALW GV +E L G+ + Y
Sbjct: 38 LGVSQAPGFHVWQLVSYAFLHGSMLHLFANMFALWMFGVQIENL----WGSRPFAFYYFF 93
Query: 100 LVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLS 159
+V +GL+ L++ +G S VFG + + P+ + L F
Sbjct: 94 CIVGAGLI-----QLVVASVAAGQGDVYPTIGASGGVFGILLAFGMMFPNQMIFLL-FPP 147
Query: 160 LPIS-------FAPFESLI-FTSIIVPQASFLGHLSGIIVGYAI 195
+P+ + FE FT + A F H+ G+I G+A+
Sbjct: 148 IPMKAKYFVLLYGAFELWAGFTGSLSGVAHF-AHIGGMIFGFAL 190
>gi|86133302|ref|ZP_01051884.1| rhomboid family protein [Polaribacter sp. MED152]
gi|85820165|gb|EAQ41312.1| rhomboid family protein [Polaribacter sp. MED152]
Length = 243
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 78/189 (41%), Gaps = 44/189 (23%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQL------------GDVGLGTAY----YL 94
W+ +T F H S H++FNM LW+ G +EQ+ +G G Y Y
Sbjct: 46 WQYVTHLFMHGSFAHILFNMYGLWAFGTPLEQMWGKKKFLFFYFSAGLGAGIIYTLVNYY 105
Query: 95 QYTLV--LVVLSGLLVLGIYHLL----------IQRFKLEYFRRVT------AVGYSCVV 136
Q+ + L V +GL I +L + E F ++T AVG S V
Sbjct: 106 QFNGIFELFVNAGLSDSEILSILKSGSTNDPRVVNAITQEQFNKITSLYNTPAVGASGAV 165
Query: 137 FGWMTILSVKQPSSKLDLFGFLSLPIS---FAP---FESLIF--TSIIVPQASFLGHLSG 188
+G + + +KL L F +PI+ F P L F T V + H+ G
Sbjct: 166 YGVLVAFGLYFKDAKLALI-FFPVPIAAKYFIPIMILGDLFFGMTKYSVGNIAHFAHIGG 224
Query: 189 IIVGYAIAW 197
++G+ IA+
Sbjct: 225 ALIGFIIAY 233
>gi|417942695|ref|ZP_12585960.1| Peptidase, S54 family [Bifidobacterium breve CECT 7263]
gi|376166735|gb|EHS85623.1| Peptidase, S54 family [Bifidobacterium breve CECT 7263]
Length = 246
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 34/227 (14%)
Query: 15 TSCIIGICSVIW-------FYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHI--SVL 65
T +I C+ +W F + G+ + W I+TS F H S+L
Sbjct: 21 TWALIAACTAVWLVEVLLGFLSPTLQNWLIYRGMLAPATMLAEPWAIVTSMFLHAPNSIL 80
Query: 66 HLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYF 124
H++FNM AL+S+G V+E+L +G +L ++ L G L + ++ ++ +
Sbjct: 81 HILFNMIALYSVGPVLERL----IGHWRFLGLYMI-SGLGGALGMMVWAVVAPGGQ---G 132
Query: 125 RRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL-SLPISFA-PFESLIFTSIIVPQASF 182
+ A G S +FG L V D+ L + ++FA PF +V ++
Sbjct: 133 WQTAAYGASGALFGLFAALLVVYRRIGADIRSMLIWMAVNFALPF--------VVGGVAW 184
Query: 183 LGHLSGIIVGYAIAWGLIHGMNNY------WALSMLGWIVLVFVYSL 223
H+ G +VG + W LI G+ + W + + GW V V V +L
Sbjct: 185 QAHVGGFVVGGLLTWLLIGGIRPWRGKSLAWRMQVYGWSVTVLVIAL 231
>gi|301300052|ref|ZP_07206273.1| peptidase, S54 family [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300852350|gb|EFK80013.1| peptidase, S54 family [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 220
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ 82
++G +WR+IT F HI + HL+ NM L+ LG + +
Sbjct: 50 INGQYWRLITPMFIHIGLQHLLINMITLYFLGTLLE 85
>gi|154483847|ref|ZP_02026295.1| hypothetical protein EUBVEN_01551 [Eubacterium ventriosum ATCC
27560]
gi|149735338|gb|EDM51224.1| peptidase, S54 family [Eubacterium ventriosum ATCC 27560]
Length = 201
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 22/166 (13%)
Query: 36 YSHVGLSYETAV--DGHHWRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTA 91
Y+H G SY + +G +RI+TS F H HL+ NM L+ LG + E G V
Sbjct: 40 YAH-GASYAPDIFENGQWYRILTSMFMHFGAEHLINNMVMLYILGYQIEENFGRVKYLIT 98
Query: 92 YYLQYTLVLVVLSGL-LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Y++ ++ SG+ ++ G Y + + G S +FG +L V S
Sbjct: 99 YFICGIAGGIISSGIEMITGEYSI--------------SAGASGAIFGIFGVLLVMIFKS 144
Query: 151 KLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
+ L G +S P F ++F + + ++ HL G + G IA
Sbjct: 145 RKQL-GQVSAPRLILLFILMVFGN-MQEGVDWMAHLGGAVTGVVIA 188
>gi|375266989|ref|YP_005024432.1| protein GlpG [Vibrio sp. EJY3]
gi|369842309|gb|AEX23453.1| protein GlpG [Vibrio sp. EJY3]
Length = 280
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 44/199 (22%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHW---RIITSAFSHISVLHLVF 69
P T I+ +C +I + +Q G L + A +G W R ++ A H S H++F
Sbjct: 98 PVTLLIMTVCVII-YGLQMIGFGRGVFALLHFPAFEGQQWQLWRWLSHALLHFSATHIIF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
N+ W LG GD+ L + LQ +V LSG G +++ F
Sbjct: 157 NLLWWWQLG-----GDIERRLSSGKLLQIFVVSAALSG---AGQFYVEGANFG------- 201
Query: 128 TAVGYSCVVF---GWMTILSVKQPSSKLDL------FGFLSLPISF-APFESLIFTSIIV 177
G S VV+ G++ IL ++P L L F + L + F PF ++ T+
Sbjct: 202 ---GLSGVVYALLGYLWILGYRRPHLGLTLPKPIIVFMLVWLVLGFVQPFMAIANTA--- 255
Query: 178 PQASFLGHLSGIIVGYAIA 196
HL G+I G AIA
Sbjct: 256 -------HLVGLISGMAIA 267
>gi|352081010|ref|ZP_08951888.1| Rhomboid family protein [Rhodanobacter sp. 2APBS1]
gi|389798976|ref|ZP_10201983.1| hypothetical protein UUC_14538 [Rhodanobacter sp. 116-2]
gi|351683051|gb|EHA66135.1| Rhomboid family protein [Rhodanobacter sp. 2APBS1]
gi|388444005|gb|EIM00132.1| hypothetical protein UUC_14538 [Rhodanobacter sp. 116-2]
Length = 205
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W+I+TSAF H V H++FNM AL+ G +E+ G + Y V +++ LL L
Sbjct: 47 WQIVTSAFMHGGVTHIMFNMLALYMFGGTIER----TFGAREFTVYYFVCAIVASLLQLA 102
Query: 111 IYHLLIQRFKLEYFRRV---TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163
+ L +F +G S +FG + + P K+ L FL +P+
Sbjct: 103 V---------LWFFPPAQYGPTLGASGAIFGLLLAFGMLYPHEKVMLI-FLPIPMP 148
>gi|409124135|ref|ZP_11223530.1| rhomboid family protein [Gillisia sp. CBA3202]
Length = 215
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 20 GICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG- 78
G +++F K NIG G Y+ I TS F H+ HL NM L+
Sbjct: 22 GFNDIVFFEKYKFNIGDIKAGAKYQ---------IFTSGFLHVDTSHLFVNMLTLYFFAN 72
Query: 79 -VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVF 137
V+ LG +G +LV L+ L++ + + L Y +AVG S V
Sbjct: 73 VVIYDLGSLG----------FILVYLASLILGNLLSYFFHKNDLNY----SAVGASGAVM 118
Query: 138 GWMTILSVKQPSSKLDLFGFLSLP 161
G + + +P L LF + +P
Sbjct: 119 GILYSAILLRPDMMLGLFFIIPIP 142
>gi|255719446|ref|XP_002556003.1| KLTH0H02816p [Lachancea thermotolerans]
gi|238941969|emb|CAR30141.1| KLTH0H02816p [Lachancea thermotolerans CBS 6340]
Length = 284
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 15/140 (10%)
Query: 61 HISVLHLVFN-MSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
H+S+ HLV N +S L + E+ ++ +T V++ L + +Y L+ F
Sbjct: 81 HLSLTHLVLNSLSLFGPLTMFER--------SHGTVHTGVVLNLLAVFTAIVYCLMGSLF 132
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPS--SKLDLFGFLSLPISFAPFESLIFTSIIV 177
F + +G S F S K+ + + +F S P + P L+ +I
Sbjct: 133 ----FSKTEVLGSSGWCFSLFAYFSFKEATIRPQQRIFHSFSAPTKYMPVLILVLVTIFF 188
Query: 178 PQASFLGHLSGIIVGYAIAW 197
P +SF GH G+ +GY +AW
Sbjct: 189 PGSSFWGHFIGMGMGYVLAW 208
>gi|163815032|ref|ZP_02206419.1| hypothetical protein COPEUT_01188 [Coprococcus eutactus ATCC 27759]
gi|158449715|gb|EDP26710.1| peptidase, S54 family [Coprococcus eutactus ATCC 27759]
Length = 377
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 26/168 (15%)
Query: 40 GLSYE-TAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQY 96
GL+YE ++ + R+++S F H HLV NM AL+ G V ++LG + + Y+
Sbjct: 81 GLNYEYVKLNKEYGRLLSSMFLHSGFDHLVGNMFALFMFGSTVEKKLGSLRMTIIYF--- 137
Query: 97 TLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMT---ILSV--KQPSSK 151
V ++SGL+ + + H+ ++ R ++G S VFG M LSV + +S+
Sbjct: 138 --VSGIVSGLISMNLSHV------MDPSRMHFSIGASGAVFGVMCAAVFLSVMGSKKASR 189
Query: 152 LDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGL 199
D+ + L + +A I+T H+ G +VG +A+ L
Sbjct: 190 RDMTIAIVLVVIYA-----IYT--YEENIDIYAHIGGAVVGGILAFAL 230
>gi|157959934|ref|YP_001499968.1| rhomboid family protein [Shewanella pealeana ATCC 700345]
gi|157844934|gb|ABV85433.1| Rhomboid family protein [Shewanella pealeana ATCC 700345]
Length = 279
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 37/193 (19%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHV---GLSY----ETAVDGHHWRIITSAFSHISVL 65
P T + C VI+ N+G+++ LS+ A WRI T + H S +
Sbjct: 98 PLTLLVFFTCVVIY---AAMNLGFANPIFEQLSFFGATSPATLSEFWRIFTPSLLHFSAM 154
Query: 66 HLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEY 123
H++FN+ W LG + +LG L +L+++ G L ++L
Sbjct: 155 HIIFNLLWWWYLGGKIENKLGFTPL---------FILLIVGGTLP----NILQYYMAGPG 201
Query: 124 FRRVTAVGYSCVVFGWMTILSVKQPSSKLDL----FGFLSLPISFAPFESLIFTSIIVPQ 179
F ++ V Y+ V + W I+ VK+P S + L GF+ L + F FT +
Sbjct: 202 FGGLSGVVYAVVGYTW--IMGVKRPESGIGLPPAYIGFMLLWLVFG------FTDMFGLS 253
Query: 180 ASFLGHLSGIIVG 192
+ HL G++VG
Sbjct: 254 IANGAHLGGLLVG 266
>gi|346314173|ref|ZP_08855694.1| hypothetical protein HMPREF9022_01351 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345906531|gb|EGX76255.1| hypothetical protein HMPREF9022_01351 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 417
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 32/194 (16%)
Query: 39 VGLSYETAVDGHH--WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQY 96
VG Y+ ++ H WRI++ F H V+H V ++ AL++ G +L + LG +YL
Sbjct: 197 VGGYYKMSIVAAHEYWRILSGGFVHNGVVHFVISLYALYATG---KLCEQRLGRGWYLAV 253
Query: 97 TLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFG 156
L V+L +L A G S +FG Q S
Sbjct: 254 FLSSVILGNAA------------QLIAAPNGIATGMSAGIFGVAAAFLTSQLLSHTLRHP 301
Query: 157 FLSLPISFAPFESLIFTSI--IVPQASFLGHLSGIIVGYAIAWGL-IH------GMNNYW 207
L +P+ + + ++ +VP SF+ ++GI+ G I +GL +H GM +
Sbjct: 302 LLRIPL----YNCMAILAVLALVPSVSFIACIAGILCG--ILYGLWMHGRQSESGMKQHA 355
Query: 208 ALSMLGWIVLVFVY 221
L+++ + +F Y
Sbjct: 356 CLALVLYAASLFAY 369
>gi|384196250|ref|YP_005581994.1| peptidase, S54 family [Bifidobacterium breve ACS-071-V-Sch8b]
gi|333110956|gb|AEF27972.1| peptidase, S54 family [Bifidobacterium breve ACS-071-V-Sch8b]
Length = 246
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 34/227 (14%)
Query: 15 TSCIIGICSVIW-------FYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHI--SVL 65
T +I C+ +W F + G+ + W I+TS F H S+L
Sbjct: 21 TWALIAACTAVWLVEVLLGFLSPTLQNWLIYRGMLAPATMLAEPWAIVTSMFLHAPNSIL 80
Query: 66 HLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYF 124
H++FNM AL+S+G V+E+L +G +L ++ L G L + ++ ++ +
Sbjct: 81 HILFNMIALYSVGPVLERL----IGHWRFLGLYMI-SGLGGALGMMVWAVVAPGGQ---G 132
Query: 125 RRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL-SLPISFA-PFESLIFTSIIVPQASF 182
+ A G S +FG L V D+ L + ++FA PF +V ++
Sbjct: 133 WQTAAYGASGALFGLFAALLVVYRRIGADIRSMLIWMAVNFALPF--------VVGGVAW 184
Query: 183 LGHLSGIIVGYAIAWGLIHGMNNY------WALSMLGWIVLVFVYSL 223
H+ G +VG + W LI G+ + W + + GW V V V +L
Sbjct: 185 QAHVGGFVVGGLLTWLLIGGIRPWRGKSLAWRMRVYGWSVTVLVIAL 231
>gi|308172329|ref|YP_003919034.1| hypothetical protein BAMF_0438 [Bacillus amyloliquefaciens DSM 7]
gi|384158053|ref|YP_005540126.1| hypothetical protein BAMTA208_02230 [Bacillus amyloliquefaciens
TA208]
gi|384162858|ref|YP_005544237.1| hypothetical protein LL3_00461 [Bacillus amyloliquefaciens LL3]
gi|384167079|ref|YP_005548457.1| hypothetical protein BAXH7_00463 [Bacillus amyloliquefaciens XH7]
gi|307605193|emb|CBI41564.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
gi|328552141|gb|AEB22633.1| hypothetical protein BAMTA208_02230 [Bacillus amyloliquefaciens
TA208]
gi|328910413|gb|AEB62009.1| hypothetical protein LL3_00461 [Bacillus amyloliquefaciens LL3]
gi|341826358|gb|AEK87609.1| hypothetical protein BAXH7_00463 [Bacillus amyloliquefaciens XH7]
Length = 199
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 9 IMEKPATSCIIGICSVIWFYIQ---KKNIGYSHVGLSYETAV-DGHHWRIITSAFSHISV 64
I PA SCI+ + + +W + + +S Y V +G WR++T F H +
Sbjct: 12 IRRYPAVSCILALQAFLWLFFSLPLHSVMMWSDAVTGYNYGVAEGEWWRLVTPMFLHANF 71
Query: 65 LHLVFNMSALW 75
HL+FN +L+
Sbjct: 72 THLLFNSMSLF 82
>gi|425744558|ref|ZP_18862613.1| peptidase, S54 family [Acinetobacter baumannii WC-323]
gi|425490154|gb|EKU56454.1| peptidase, S54 family [Acinetobacter baumannii WC-323]
Length = 268
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
G R+ TS F H ++HL+ NM AL+ G V EQL G +YY + L VL+GL
Sbjct: 63 SGQAERLFTSMFFHFGLIHLMLNMWALYIFGSVAEQL----FGRSYY----IALYVLAGL 114
Query: 107 L--VLGIY------HLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSV 145
+ VL Y + L+Q F + ++A G S V G L+V
Sbjct: 115 MGSVLSSYLSIRDGYALLQHFDPKLLPHISA-GASGAVMGLGAALTV 160
>gi|90961526|ref|YP_535442.1| rhomboid family integral membrane protein [Lactobacillus
salivarius UCC118]
gi|385840241|ref|YP_005863565.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius CECT 5713]
gi|90820720|gb|ABD99359.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius UCC118]
gi|300214362|gb|ADJ78778.1| Integral membrane protein, Rhomboid family [Lactobacillus
salivarius CECT 5713]
Length = 220
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ 82
++G +WR+IT F HI + HL+ NM L+ LG + +
Sbjct: 50 INGQYWRLITPMFIHIGLQHLLINMITLYFLGTLLE 85
>gi|418048760|ref|ZP_12686847.1| Peptidase S54, rhomboid domain protein [Mycobacterium rhodesiae
JS60]
gi|353189665|gb|EHB55175.1| Peptidase S54, rhomboid domain protein [Mycobacterium rhodesiae
JS60]
Length = 248
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYL 94
G ++R++TSAF H LHL+FNM AL+ +G + LG + G Y L
Sbjct: 73 GGEYYRLVTSAFMHYGALHLLFNMWALYVIGPPLESWLGRLRFGALYAL 121
>gi|157273306|gb|ABV27205.1| integral membrane protein Rhomboid family protein [Candidatus
Chloracidobacterium thermophilum]
Length = 386
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
G WR++ F HI V+HLV NM ALW +G QL + G+A + +L VLSG+
Sbjct: 73 AQGELWRLVVPMFLHIGVIHLVANMYALWVVG--PQLESL-YGSARF----TILYVLSGI 125
>gi|226952474|ref|ZP_03822938.1| rhomboid family protein [Acinetobacter sp. ATCC 27244]
gi|226836796|gb|EEH69179.1| rhomboid family protein [Acinetobacter sp. ATCC 27244]
Length = 267
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
G R+ +S F H ++HL+ NM AL+ G + EQL A Y L+ VLS L
Sbjct: 64 GQPERLFSSMFFHFGMIHLMLNMWALYIFGSIAEQLFGRRYYIALYFLAGLMGSVLSSYL 123
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGW---MTILSV 145
+ + L+Q F +Y +++A G S V G +TI+SV
Sbjct: 124 SILDGYQLLQHFDPKYLPKISA-GASGAVMGLGAALTIISV 163
>gi|91776194|ref|YP_545950.1| rhomboid-like protein [Methylobacillus flagellatus KT]
gi|91710181|gb|ABE50109.1| Rhomboid-like protein [Methylobacillus flagellatus KT]
Length = 356
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHV----------GLSYETAV-DGHHWRIITSAFSH 61
P T C+I +++ + G+ H G ++ A DG WR+ T+ F H
Sbjct: 23 PVTKCLIAANLLVFVLMLFNGAGFWHSPNNVQLQLAWGANFGPATQDGEWWRLFTALFLH 82
Query: 62 ISVLHLVFNMSALWSLG-VVEQL 83
+HL NM A W G +VE++
Sbjct: 83 FGAVHLALNMIAFWDGGQLVERM 105
>gi|451348178|ref|YP_007446809.1| rhomboid protease [Bacillus amyloliquefaciens IT-45]
gi|449851936|gb|AGF28928.1| rhomboid protease [Bacillus amyloliquefaciens IT-45]
Length = 199
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 9 IMEKPATSCIIGICSVIWFYIQ---KKNIGYSHVGLSYETAVD-GHHWRIITSAFSHISV 64
I PA SCI+ + + +W + + +S Y V G WR++T F H +
Sbjct: 12 IRRYPAVSCILALQAFLWLFFSMPLHSVMMWSDAVTGYNNGVSSGEWWRLVTPMFLHANF 71
Query: 65 LHLVFNMSALW 75
HL+FN +L+
Sbjct: 72 THLLFNSMSLF 82
>gi|418512025|ref|ZP_13078271.1| intramembrane serine protease GlpG [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366084075|gb|EHN47988.1| intramembrane serine protease GlpG [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
Length = 274
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 33/204 (16%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITS 57
P + E+ P T ++ +C ++ YI IG V ++ + WR T
Sbjct: 82 PFLATLRERAGPVTWIVMLVCVLV--YIAMSLIGDQTVMVWLAWPFDPVLKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
F H S++H++FN+ W LG VE+ LG+ + T++ +LSG +
Sbjct: 140 IFMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITVISALLSGYVQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS----KLDLFGFLSLPISFAPFESLIF 172
Q+F +F ++ V Y+ + + W+ + P S + L F L I F+ F
Sbjct: 188 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQSGIYLQRGLIIFALLWIVAGWFD--WF 243
Query: 173 TSIIVPQASFLGHLSGIIVGYAIA 196
+ A H++G+IVG A+A
Sbjct: 244 GMSMANGA----HIAGLIVGLAMA 263
>gi|384418691|ref|YP_005628051.1| integral membrane protein [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353461604|gb|AEQ95883.1| integral membrane protein [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 232
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W+++T AF H HL FNM AL+ G +EQ G +L Y LV V + G
Sbjct: 63 WQLLTYAFLHGGFNHLFFNMLALFMFGAPLEQT----WGQKRFLTYYLVCVACA-----G 113
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP-------IS 163
+ LL+ F VG S VFG + + P+ ++ L F +P I
Sbjct: 114 VCQLLMAWFTQS---GAPVVGASGGVFGLLLAYGMLFPNQRVMLL-FPPIPMKARTFVIV 169
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGY 193
F E ++ + P + HL G++ G+
Sbjct: 170 FGAIELMLGATGWQPGVAHFAHLGGMLFGW 199
>gi|419660250|ref|ZP_14190729.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni 2008-979]
gi|380637211|gb|EIB54859.1| putative integral membrane protein [Campylobacter jejuni subsp.
jejuni 2008-979]
Length = 172
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 27/155 (17%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
+G +W++++S F H ++ HL+ NM L+ G ++ + LGT + + G L
Sbjct: 33 NGAYWQLLSSMFLHGNLTHLILNMIVLFQFG---RMLETYLGTL-----CFIFIYFIGGL 84
Query: 108 VLGIYHLLIQRFKLEYF-RRVTAVGYS---CVVFGWMTILSVKQPSSKLDLFGFLS--LP 161
+ + + F +YF + +G S CV+ G+ + + + S+K G + L
Sbjct: 85 LCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAV--IDKNSTK----GLIVAILL 138
Query: 162 ISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
+SF P ++ ++ GH+ G + GY +A
Sbjct: 139 MSFVPL-------LMGVNVAWYGHIFGFMCGYILA 166
>gi|374995763|ref|YP_004971262.1| hypothetical protein Desor_3244 [Desulfosporosinus orientis DSM
765]
gi|357214129|gb|AET68747.1| putative membrane protein [Desulfosporosinus orientis DSM 765]
Length = 316
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 19/30 (63%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG 78
G WR TS F HI LHL FN+ ALW LG
Sbjct: 176 GEVWRFFTSMFIHIGYLHLGFNLYALWVLG 205
>gi|431796050|ref|YP_007222954.1| hypothetical protein Echvi_0667 [Echinicola vietnamensis DSM 17526]
gi|430786815|gb|AGA76944.1| putative membrane protein [Echinicola vietnamensis DSM 17526]
Length = 209
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 25/163 (15%)
Query: 10 MEKPATSCIIGICSVIWFYIQKKNIGYSHVGLS-YETAVDGHHWRIITSAFSHISVLHLV 68
M+ AT II I ++ FY K S + Y+ G + R + S F H +HL+
Sbjct: 1 MQLSATVLIIIITALSSFYAWKHYAFLSRSMFNPYQVNQKGQYDRFVLSGFIHKDGMHLL 60
Query: 69 FNMSALWSLG-VVEQLGDVGLGTAYYLQY---------TLVLVVLSGLLVLGIYHLLIQR 118
FNM + G +VEQ YL Y VL L+ +++ I L +
Sbjct: 61 FNMITFYFFGRLVEQ----------YLTYRFGGMTGVVVFVLFYLAAIVIADIPTFLKHK 110
Query: 119 FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
Y + G + VF + ++ P + + LFG L LP
Sbjct: 111 NNPHYQALGASGGTAAAVFASIILM----PMADICLFGLLCLP 149
>gi|423204726|ref|ZP_17191282.1| hypothetical protein HMPREF1168_00917 [Aeromonas veronii AMC34]
gi|404625823|gb|EKB22636.1| hypothetical protein HMPREF1168_00917 [Aeromonas veronii AMC34]
Length = 277
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 25/156 (16%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSG 105
D WR T A H SVLHLVFN+ W L G +EQ LG+ L++++L G
Sbjct: 134 TDWQAWRYFTPALIHFSVLHLVFNLLWWWYLGGQIEQR----LGSG-----KLLILLLVG 184
Query: 106 LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165
+ I F ++ V Y+ + + W+ SKL L+LP +
Sbjct: 185 AALPNIAEFFASG---PLFGGLSGVVYALLGYCWL--------RSKLQPACGLTLPPALM 233
Query: 166 PF----ESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
F L F ++ + + HL+G++VG W
Sbjct: 234 GFMLFWMVLGFFDMLGTSTANIAHLTGLLVGLLQGW 269
>gi|294649763|ref|ZP_06727167.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
gi|292824344|gb|EFF83143.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
Length = 267
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
G R+ +S F H ++HL+ NM AL+ G + EQL A Y L+ VLS L
Sbjct: 64 GQPERLFSSMFFHFGMIHLMLNMWALYIFGSIAEQLFGRRYYIALYFLAGLMGSVLSSYL 123
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGW---MTILSV 145
+ + L+Q F +Y +++A G S V G +TI+SV
Sbjct: 124 SILDGYQLLQHFDPKYLPKISA-GASGAVMGLGAALTIISV 163
>gi|88803472|ref|ZP_01118998.1| putative integral membrane protein [Polaribacter irgensii 23-P]
gi|88781038|gb|EAR12217.1| putative integral membrane protein [Polaribacter irgensii 23-P]
Length = 218
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
+ G R++TS F H+ +HL FNM AL+ G + G +G+ + +++ L
Sbjct: 41 ISGEKIRLLTSGFLHVDYMHLGFNMYALYLFGDIVS-GMMGI-------FNFLIIYFISL 92
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPI 162
L +Y L R + Y +AVG S V G + + P L LF F+ +PI
Sbjct: 93 LAGNLYTLKYHRDEPYY----SAVGASGAVSGIVYAAILLYPGMSLYLF-FIPIPI 143
>gi|410643805|ref|ZP_11354295.1| GlpG protein [Glaciecola chathamensis S18K6]
gi|410136618|dbj|GAC12482.1| GlpG protein [Glaciecola chathamensis S18K6]
Length = 283
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 14/91 (15%)
Query: 47 VDGHHW-RIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLS 104
++ H W R+I A H SVLH+VFN+ W+L G +E+L LG A TLV++ L
Sbjct: 137 LENHQWWRLIGPALIHFSVLHIVFNLLWWWTLGGQIERL----LGRA-----TLVMLFLF 187
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCV 135
L+ I LL+ E F ++ V Y+ V
Sbjct: 188 SALLSNIGQLLVSG---ENFGGLSGVVYALV 215
>gi|385263597|ref|ZP_10041684.1| Rhomboid family protein [Bacillus sp. 5B6]
gi|385148093|gb|EIF12030.1| Rhomboid family protein [Bacillus sp. 5B6]
Length = 199
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 9 IMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHH--------WRIITSAFS 60
I PA SCI+ + + +W + H + + AV G++ WR++T F
Sbjct: 12 IRRYPAVSCILALQAFLWLFFSMP----LHSVMMWSDAVTGYNYGVSSGEWWRLVTPMFL 67
Query: 61 HISVLHLVFNMSALW 75
H + HL+FN +L+
Sbjct: 68 HANFTHLLFNSMSLF 82
>gi|374374022|ref|ZP_09631681.1| Peptidase S54, rhomboid domain [Niabella soli DSM 19437]
gi|373233464|gb|EHP53258.1| Peptidase S54, rhomboid domain [Niabella soli DSM 19437]
Length = 490
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 46 AVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ--LGDVGLGTAYYL 94
++G WR++T+ F H+ + HL+ NM AL +GV+ + LG +AY L
Sbjct: 196 TLEGQWWRLLTNCFLHVGIFHLLLNMYALLYIGVLLEPLLGRTRFISAYLL 246
>gi|330831660|ref|YP_004394612.1| GlpG protein [Aeromonas veronii B565]
gi|423211697|ref|ZP_17198230.1| hypothetical protein HMPREF1169_03748 [Aeromonas veronii AER397]
gi|328806796|gb|AEB51995.1| GlpG protein [Aeromonas veronii B565]
gi|404613196|gb|EKB10231.1| hypothetical protein HMPREF1169_03748 [Aeromonas veronii AER397]
Length = 277
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 25/156 (16%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSG 105
D WR T A H SVLHLVFN+ W L G +EQ LG+ L++++L G
Sbjct: 134 TDWQAWRYFTPALIHFSVLHLVFNLLWWWYLGGQIEQ----RLGSG-----KLLILLLVG 184
Query: 106 LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165
+ I F ++ V Y+ + + W+ SKL L+LP +
Sbjct: 185 AALPNIAEFFASG---PLFGGLSGVVYALLGYCWL--------RSKLQPACGLTLPPALM 233
Query: 166 PF----ESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
F L F ++ + + HL+G++VG W
Sbjct: 234 GFMLFWMVLGFFDMLGTSTANIAHLTGLLVGLLQGW 269
>gi|227500934|ref|ZP_03930983.1| S54 family peptidase [Anaerococcus tetradius ATCC 35098]
gi|227216905|gb|EEI82299.1| S54 family peptidase [Anaerococcus tetradius ATCC 35098]
Length = 226
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG 78
G WRI T+AF HI H++FNM L+S+G
Sbjct: 54 GQWWRIFTAAFIHIGFFHILFNMYFLYSIG 83
>gi|224541762|ref|ZP_03682301.1| hypothetical protein CATMIT_00934 [Catenibacterium mitsuokai DSM
15897]
gi|224525366|gb|EEF94471.1| peptidase, S54 family [Catenibacterium mitsuokai DSM 15897]
Length = 206
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 19/159 (11%)
Query: 43 YETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVV 102
Y V ++R+IT+ F H ++H+V N +L+ L + +GT Y ++V+
Sbjct: 46 YYVHVTHQYYRLITANFIHFGLMHIVVNCYSLFDLSC---FAEYLIGTKKY-----IIVI 97
Query: 103 LSGLL-VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQ---PSSKLDLFGFL 158
L+ +L G+ ++ F + G S V+FG + + PS D+ L
Sbjct: 98 LASMLSTTGLPYIAYLLFGTG--AHTVSGGVSGVIFGIIGAIGALYLFFPSQLRDIARSL 155
Query: 159 SLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
+ + ++F S +VP S GH+SG+I G+ A+
Sbjct: 156 GMNVLL-----MLFISFVVPTISLSGHVSGLIGGFVSAY 189
>gi|127514640|ref|YP_001095837.1| rhomboid family protein [Shewanella loihica PV-4]
gi|126639935|gb|ABO25578.1| Rhomboid family protein [Shewanella loihica PV-4]
Length = 278
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 31/164 (18%)
Query: 41 LSYETAVDGHH----WRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYL 94
LS+ AV G WR+ T + H S +H++FN+ W LG + +LG L
Sbjct: 126 LSFFAAVPGSDTSQIWRVFTPSLMHFSAMHIIFNLLWWWYLGGKIENKLGVTPL------ 179
Query: 95 QYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
L L++++G L +LL F ++ V Y+ V + W I+ V++P + L
Sbjct: 180 ---LTLLLIAGTLP----NLLQYAIGGPNFGGLSGVVYAVVGYTW--IMGVRRPEKGIGL 230
Query: 155 ----FGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYA 194
GF+ + + F FT + + H+ G++VG A
Sbjct: 231 PPAYIGFMLVWLVFG------FTDMFGLSIANGAHVGGLMVGLA 268
>gi|71064855|ref|YP_263582.1| rhomboid family protein [Psychrobacter arcticus 273-4]
gi|71037840|gb|AAZ18148.1| possible Rhomboid family protein [Psychrobacter arcticus 273-4]
Length = 202
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 43 YETAVDGHHW-RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLV 101
Y AV+ W R +T F H +HL+FNM L+ G + GL + Y +L
Sbjct: 32 YPPAVNNGQWDRFVTHGFIHADSMHLLFNMFTLYFFGRAIE----GLYQKFLFGYGFLLF 87
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
+ ++V I + + Y + G S V+F ++ + P K+ LF + +P
Sbjct: 88 YVLAIIVAMIPSYIKHKQSASYLSLGASGGVSAVLFAFILL----APWEKIYLFAIIPIP 143
>gi|343513393|ref|ZP_08750496.1| protein GlpG [Vibrio sp. N418]
gi|342802186|gb|EGU37626.1| protein GlpG [Vibrio sp. N418]
Length = 274
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 38/195 (19%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRI---ITSAFSHISVLHLVF 69
P T I+ C I F +Q+ G + A G W++ ++ A H S++H+ F
Sbjct: 98 PLTLAIMAACIGI-FILQQFGAGQPVFDALHFPAFAGQEWQVWRWVSHALLHFSIMHIAF 156
Query: 70 NMSALWSLGVVEQLGDVG--LGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLE--YFR 125
N+ W LG GD+ LG+ LQ + LSG I +F +E F
Sbjct: 157 NLLWWWQLG-----GDIEQRLGSGKLLQLFVFSAALSG----------IGQFWVEGANFG 201
Query: 126 RVTAVGYSCVVFGWMTILSVKQPSSKL----DLFGFL--SLPISF-APFESLIFTSIIVP 178
++ V Y+ V + W +L + P L L GF+ L + F PF ++ T+ +V
Sbjct: 202 GLSGVVYALVGYIW--LLGYRAPEKGLLMPKPLIGFMLVWLVLGFVQPFMAIANTAHLV- 258
Query: 179 QASFLGHLSGIIVGY 193
G L+G+++G+
Sbjct: 259 -----GLLAGVMLGW 268
>gi|257453937|ref|ZP_05619213.1| S54 family peptidase [Enhydrobacter aerosaccus SK60]
gi|257448602|gb|EEV23569.1| S54 family peptidase [Enhydrobacter aerosaccus SK60]
Length = 291
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQ 82
WR++TS F HI +HL+FNM AL+ G V +
Sbjct: 63 WRLVTSLFLHIGFMHLLFNMFALYYFGQVAE 93
>gi|146413501|ref|XP_001482721.1| hypothetical protein PGUG_04676 [Meyerozyma guilliermondii ATCC
6260]
Length = 291
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 131 GYSCVVFGWMTILSVKQPSSKLDLFGF---LSLPISFAPFESLIFTSIIVPQASFLGHLS 187
G S + F ++ ++K+ S F + LP ++ F LI T I+VP +S LGHL+
Sbjct: 150 GLSAICFLFLEFYALKEQSYYPIAFQWGDRYRLPTKYSAFVVLIITFILVPNSSLLGHLA 209
Query: 188 GIIVGYAIA 196
GI GY +A
Sbjct: 210 GIGSGYLLA 218
>gi|343523357|ref|ZP_08760319.1| peptidase, S54 family [Actinomyces sp. oral taxon 175 str. F0384]
gi|343400513|gb|EGV13031.1| peptidase, S54 family [Actinomyces sp. oral taxon 175 str. F0384]
Length = 284
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 15 TSCIIGICSVIW---FYIQKKNIGYSHVGLSYETAVDGHH-WRIITSAFSHISVLHLVFN 70
T ++G+C V++ I + + + L + A+ + WR +T+AF H + +HL FN
Sbjct: 77 TKILVGLCVVVYALQVLIPEVTMQSLELRLGFVPALAVYEPWRFLTTAFLHANYMHLGFN 136
Query: 71 MSALWSLG 78
M ALW LG
Sbjct: 137 MWALWVLG 144
>gi|339478320|gb|ABE94774.1| Conserved hypothetical membrane spanning protein in rhomboid family
[Bifidobacterium breve UCC2003]
Length = 244
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 34/227 (14%)
Query: 15 TSCIIGICSVIW-------FYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHI--SVL 65
T +I C+ +W F + G+ + W I+TS F H S+L
Sbjct: 19 TWALIAACTAVWLVEVLLGFLSPTLQNWLIYRGMLAPATMLAEPWAIVTSMFLHSPNSIL 78
Query: 66 HLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYF 124
H++FNM AL+S+G V+E+L +G +L ++ L G L + ++ ++ +
Sbjct: 79 HILFNMIALYSVGPVLERL----IGHWRFLGLYMI-SGLGGALGMMVWAVVAPGGQ---G 130
Query: 125 RRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL-SLPISFA-PFESLIFTSIIVPQASF 182
+ A G S +FG L V D+ L + ++FA PF +V ++
Sbjct: 131 WQTAAYGASGALFGLFAALLVVYRRIGADIRSMLIWMAVNFALPF--------VVGGVAW 182
Query: 183 LGHLSGIIVGYAIAWGLIHGMNNY------WALSMLGWIVLVFVYSL 223
H+ G +VG + W LI G+ + W + + GW V V V +L
Sbjct: 183 QAHVGGFVVGGLLTWLLIGGIRPWRGKSLAWRMQVYGWSVTVLVIAL 229
>gi|423203039|ref|ZP_17189617.1| hypothetical protein HMPREF1167_03200 [Aeromonas veronii AER39]
gi|404613682|gb|EKB10701.1| hypothetical protein HMPREF1167_03200 [Aeromonas veronii AER39]
Length = 277
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 25/156 (16%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSG 105
D WR T A H SVLHLVFN+ W L G +EQ LG+ L++++L G
Sbjct: 134 TDWQAWRYFTPALIHFSVLHLVFNLLWWWYLGGQIEQ----RLGSG-----KLLILLLVG 184
Query: 106 LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165
+ I F ++ V Y+ + + W+ SKL L+LP +
Sbjct: 185 AALPNIAEFFASG---PLFGGLSGVVYALLGYCWL--------RSKLQPACGLTLPPALM 233
Query: 166 PF----ESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
F L F ++ + + HL+G++VG W
Sbjct: 234 GFMLFWMVLGFFDMLGTSTANIAHLTGLLVGLLQGW 269
>gi|403714833|ref|ZP_10940699.1| rhomboid family protein [Kineosphaera limosa NBRC 100340]
gi|403211161|dbj|GAB95382.1| rhomboid family protein [Kineosphaera limosa NBRC 100340]
Length = 213
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 27 FYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVL--HLVFNMSALWSLGVVEQLG 84
F++Q+ + +G D WR +TSAF H + H++FNM LWS+G Q
Sbjct: 2 FFLQQADRSIILLGQFSPLTGDEQPWRFLTSAFLHSPTMFAHILFNMLCLWSIG---QWL 58
Query: 85 DVGLGTAYYLQYTLV 99
+ LG A +L LV
Sbjct: 59 EPMLGWARFLTLYLV 73
>gi|256425736|ref|YP_003126389.1| rhomboid family protein [Chitinophaga pinensis DSM 2588]
gi|256040644|gb|ACU64188.1| Rhomboid family protein [Chitinophaga pinensis DSM 2588]
Length = 280
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
++ + R+ITS F H+S +HL FNM +L+ + +V LG YL +V L
Sbjct: 41 IEKDYKRLITSGFLHVSWMHLFFNMVSLF---LFSNSLEVKLGPTAYLTLYFASLVGGNL 97
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGF-LSLP 161
L LLI R +Y +AVG S V G + P+ +L FG S+P
Sbjct: 98 L-----SLLIHRNHGDY----SAVGASGAVCGVIFASIALFPAMRLGFFGIPFSIP 144
>gi|167549266|ref|ZP_02343025.1| protein of glp regulon [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205325503|gb|EDZ13342.1| protein of glp regulon [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
Length = 274
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 23/158 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITS 57
P + E+ P T ++ C ++ YI IG V ++ + WR T
Sbjct: 82 PFLATLRERAGPVTWIVMLACVLV--YIAMSLIGDQTVMVWLAWPFDPVLKFEFWRYFTH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
F H S++H++FN+ W L G VE+ LG+ + T++ +LSG +
Sbjct: 140 IFMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITVISALLSGYVQ-------- 187
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
Q+F +F ++ V Y+ + + W+ + P S + L
Sbjct: 188 QKFSGPWFGGLSGVVYALMGYVWLR--GARDPQSGIYL 223
>gi|343084832|ref|YP_004774127.1| rhomboid family protein [Cyclobacterium marinum DSM 745]
gi|342353366|gb|AEL25896.1| Rhomboid family protein [Cyclobacterium marinum DSM 745]
Length = 209
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 65/158 (41%), Gaps = 14/158 (8%)
Query: 43 YETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLV 101
Y DG + R +TS F H HL+FNM + G VVE + G + VL
Sbjct: 35 YIIKTDGAYGRFLTSGFIHKDGTHLLFNMFTFYFFGNVVESYLNYAFGPELGIV-AFVLF 93
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
L +++ I L ++ Y + G S VF + ++ P S + +FG LP
Sbjct: 94 YLIAIIIADIPTYLKEQNNPSYHALGASGGTSATVFASIILM----PLSDICIFGIFCLP 149
Query: 162 --------ISFAPFESLIFTSIIVPQASFLGHLSGIIV 191
+ +A ++ I A F G + GI+V
Sbjct: 150 GFILGLLFLGYAFYKGRAGGDNINHDAHFYGAVFGILV 187
>gi|395238215|ref|ZP_10416153.1| Possible membrane protein [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477919|emb|CCI86130.1| Possible membrane protein [Lactobacillus gigeriorum CRBIP 24.85]
Length = 230
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 23/158 (14%)
Query: 42 SYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVL 100
+Y A G WR+ T+ F HI ++HLV N ++ LG+ +E L LG +L L+
Sbjct: 46 NYTVAAAGQWWRLFTAQFLHIGIMHLVSNAVMIYYLGMFLEPL----LGHIRFLAVYLIS 101
Query: 101 VVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSL 160
+ LL F L R ++A G S +FG L + + G SL
Sbjct: 102 GIGGNLL----------SFALGDDRSISA-GASTALFGLFGALIAVGVRNATSVEGSNSL 150
Query: 161 PISFAPFESLIFT------SIIVPQASFLGHLSGIIVG 192
IS+ ++ + + +P GHL G+ G
Sbjct: 151 -ISYISRQAFVLALINIGLDLFIPNIDLQGHLGGLFTG 187
>gi|394994552|ref|ZP_10387265.1| YdcA, partial [Bacillus sp. 916]
gi|393804581|gb|EJD65987.1| YdcA, partial [Bacillus sp. 916]
Length = 184
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 9 IMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHH--------WRIITSAFS 60
I PA SCI+ + + +W + H + + AV G++ WR++T F
Sbjct: 12 IRRYPAVSCILALQAFLWLFFSMP----LHSVMMWSDAVTGYNYGVSSGEWWRLVTPMFL 67
Query: 61 HISVLHLVFNMSALW 75
H + HL+FN +L+
Sbjct: 68 HANFTHLLFNSMSLF 82
>gi|281424725|ref|ZP_06255638.1| rhomboid family protein [Prevotella oris F0302]
gi|281401095|gb|EFB31926.1| rhomboid family protein [Prevotella oris F0302]
Length = 319
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 40 GLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVV 80
GL + A D H ++++T F H ++ H+ FNM ALW G+V
Sbjct: 43 GLHFFLASDFHFYQLVTYMFMHANLEHIFFNMFALWMFGMV 83
>gi|311748421|ref|ZP_07722206.1| cytoplasmic membrane protein [Algoriphagus sp. PR1]
gi|126576933|gb|EAZ81181.1| cytoplasmic membrane protein [Algoriphagus sp. PR1]
Length = 209
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSL-GVVEQL----GDVGLGTAYYLQYTLVLVVLSGLL 107
R +TS F H +HL+FNM + G VEQ +G G Y+ + ++ +VLS +
Sbjct: 45 RFVTSGFIHRDYMHLLFNMFTFYFFGGFVEQFLAYKFGLGFGGLIYIVFYILGIVLSDIP 104
Query: 108 VLGIYHLLIQRFKLEYFRRVTAV-GYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
++ Y+R + A G + VF + I+ P S + LFG L LP
Sbjct: 105 T------YLKNQDHSYYRALGASGGTAATVFASIIIM----PLSDICLFGILCLP 149
>gi|93005136|ref|YP_579573.1| rhomboid-like protein [Psychrobacter cryohalolentis K5]
gi|92392814|gb|ABE74089.1| Rhomboid-like protein [Psychrobacter cryohalolentis K5]
Length = 230
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 43 YETAVDGHHW-RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLV 101
Y AV+ W R +T F H +HL+FNM L+ G + GL + Y +L
Sbjct: 60 YPPAVNNGQWDRFVTHGFIHADSMHLLFNMFTLYFFGRAIE----GLYQKFLFGYGFLLF 115
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
+ ++V I + + Y + G S V+F ++ + P K+ LF + +P
Sbjct: 116 YVLAIIVAMIPSYIKHKQSASYLSLGASGGVSAVLFAFILL----APWEKIYLFAIIPIP 171
>gi|429503970|ref|YP_007185154.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|429485560|gb|AFZ89484.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 199
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 9 IMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHH--------WRIITSAFS 60
I PA SCI+ + + +W + H + + AV G++ WR++T F
Sbjct: 12 IRRYPAVSCILALQAFLWLFFSMP----LHSVMMWSDAVTGYNYGVSSGEWWRLVTPMFL 67
Query: 61 HISVLHLVFNMSALW 75
H + HL+FN +L+
Sbjct: 68 HANFTHLLFNSMSLF 82
>gi|318080696|ref|ZP_07988028.1| hypothetical protein SSA3_29396 [Streptomyces sp. SA3_actF]
Length = 248
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 44/184 (23%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
+G +R++T+AF H + H+ NM +LW LG +E + LG A +L L
Sbjct: 82 EGEWYRLLTAAFLHQEIWHIAVNMLSLWFLGPAIESM----LGRARFLALYL-------- 129
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCV--VFGWMTILSVKQPSSKLDLFG-----FLS 159
+ AVG S +F S+ + LFG L
Sbjct: 130 --------------------IAAVGGSVASYLFAAPNAASLGASGAIFGLFGATGILVLR 169
Query: 160 LPISFAPFESLIFTSIIV----PQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWI 215
+ PF +L+ ++I+ ++ H+ G++VG +A GL++ + AL G
Sbjct: 170 VRADVRPFVALLVINLIITFGWSNIAWQAHIGGLVVGVLVAAGLVYAPRRHRALVQWGTC 229
Query: 216 VLVF 219
+V
Sbjct: 230 AVVL 233
>gi|302389193|ref|YP_003825014.1| rhomboid family protein [Thermosediminibacter oceani DSM 16646]
gi|302199821|gb|ADL07391.1| Rhomboid family protein [Thermosediminibacter oceani DSM 16646]
Length = 227
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 17/106 (16%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
G + ITS F H S LHL+ NM LW G V +++G + L+ +LSG+
Sbjct: 66 GDLYPFITSIFLHGSTLHLISNMWILWLFGDNVEDRMGHIRF---------LLFYLLSGV 116
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKL 152
+ G++HL+ RV VG S + G M V PS+++
Sbjct: 117 IA-GVFHLVFNPLS-----RVPVVGASGAIAGVMGAYFVLFPSARI 156
>gi|154684964|ref|YP_001420125.1| hypothetical protein RBAM_004950 [Bacillus amyloliquefaciens
FZB42]
gi|375361124|ref|YP_005129163.1| Rhomboid-like protease 4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384264056|ref|YP_005419763.1| putative RNA binding protein containing S1 RNA binding
domain,YdcI [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387896968|ref|YP_006327264.1| rhomboid protease [Bacillus amyloliquefaciens Y2]
gi|421732888|ref|ZP_16172004.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|452854498|ref|YP_007496181.1| Putative rhomboid protease ydcA [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|154350815|gb|ABS72894.1| YdcA [Bacillus amyloliquefaciens FZB42]
gi|371567118|emb|CCF03968.1| Rhomboid-like protease 4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380497409|emb|CCG48447.1| putative RNA binding protein containing S1 RNA binding
domain,YdcI [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387171078|gb|AFJ60539.1| Rhomboid protease [Bacillus amyloliquefaciens Y2]
gi|407073249|gb|EKE46246.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|452078758|emb|CCP20509.1| Putative rhomboid protease ydcA [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 199
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 9 IMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHH--------WRIITSAFS 60
I PA SCI+ + + +W + H + + AV G++ WR++T F
Sbjct: 12 IRRYPAVSCILALQAFLWLFFSMP----LHSVMMWSDAVTGYNYGVSSGEWWRLVTPMFL 67
Query: 61 HISVLHLVFNMSALW 75
H + HL+FN +L+
Sbjct: 68 HANFTHLLFNSMSLF 82
>gi|410648892|ref|ZP_11359288.1| rhomboid-like protein [Glaciecola agarilytica NO2]
gi|410131552|dbj|GAC07687.1| rhomboid-like protein [Glaciecola agarilytica NO2]
Length = 283
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 14/91 (15%)
Query: 47 VDGHHW-RIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLS 104
++ H W R+I A H SVLH+VFN+ W+L G +E+L LG A TLV++ L
Sbjct: 137 LENHQWWRLIGPALIHFSVLHIVFNLLWWWTLGGQIERL----LGRA-----TLVMLFLF 187
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCV 135
L+ I LL+ E F ++ V Y+ V
Sbjct: 188 SALLSNIGQLLVSG---ENFGGLSGVVYALV 215
>gi|395768820|ref|ZP_10449335.1| hypothetical protein Saci8_03541 [Streptomyces acidiscabies 84-104]
Length = 298
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 99/230 (43%), Gaps = 41/230 (17%)
Query: 9 IMEKP--ATSCIIGICSVIWFYIQKKNIGYSH----VGLSYETAV---------DGHHWR 53
I E P T ++GIC+V + Q ++ +G + A+ +G +R
Sbjct: 78 IAEDPRLVTKILLGICAVAFLAQQALGDEFTDRFDLIGRALMPALGWDQLQGVAEGQWYR 137
Query: 54 IITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYH 113
++TS F H S++H++ N +LW +G + LG A Y L L +SGL + +
Sbjct: 138 LLTSMFLHGSIIHILSNALSLWWIGGPL---EAALGRARY----LALFFVSGLAGSALTY 190
Query: 114 LLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFT 173
L+ + + ++G S +FG ++V + D+ +++ + +LI T
Sbjct: 191 LVAEPNQ-------ASLGASGAIFGVFGAMAVLMRRQRYDMRPMIAILVI-----NLIIT 238
Query: 174 ---SIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNYWALSMLGWIVLVFV 220
S I QA H+ G++ G I G+++ + G LV
Sbjct: 239 FGWSGIAWQA----HVGGLVAGVIIGAGMVYAPREKRTIVQYGTCALVLA 284
>gi|373459954|ref|ZP_09551721.1| Rhomboid family protein [Caldithrix abyssi DSM 13497]
gi|371721618|gb|EHO43389.1| Rhomboid family protein [Caldithrix abyssi DSM 13497]
Length = 282
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 25/163 (15%)
Query: 52 WRIITSAFSHI--SVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVL 109
W++ T F H ++H++FNM LW G + GT +L+Y + + +G+L +
Sbjct: 62 WQLFTYMFLHDPSGLMHILFNMLFLWMFGAELE---NEWGTREFLKYYFITGIGAGILNI 118
Query: 110 GIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS-FAPFE 168
I +G S V+G M +++ P + ++ + I F F
Sbjct: 119 II-------------SSSPTIGASGAVYGIMLAYALRYPDRYIYIYFLFPVKIKYFMAFL 165
Query: 169 SLI-FTSIIVPQA---SFLGHLSGIIVGYAI--AWGLIHGMNN 205
+L+ F S P + + HL GII+GY W L + + N
Sbjct: 166 TLVSFFSTFSPYSDGIAHAAHLGGIIIGYVYLKYWYLFYKIKN 208
>gi|345857374|ref|ZP_08809813.1| rhomboid family protein [Desulfosporosinus sp. OT]
gi|344329492|gb|EGW40831.1| rhomboid family protein [Desulfosporosinus sp. OT]
Length = 328
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ 82
G WR++TS F HI ++HL FN+ AL +LG + +
Sbjct: 185 GEVWRLLTSIFIHIGIIHLAFNLYALRALGPLTE 218
>gi|332304455|ref|YP_004432306.1| rhomboid family protein [Glaciecola sp. 4H-3-7+YE-5]
gi|332171784|gb|AEE21038.1| Rhomboid family protein [Glaciecola sp. 4H-3-7+YE-5]
Length = 283
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 14/91 (15%)
Query: 47 VDGHHW-RIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLS 104
++ H W R+I A H SVLH+VFN+ W+L G +E+L LG A TLV++ L
Sbjct: 137 LENHQWWRLIGPALIHFSVLHIVFNLLWWWTLGGQIERL----LGRA-----TLVMLFLF 187
Query: 105 GLLVLGIYHLLIQRFKLEYFRRVTAVGYSCV 135
L+ I LL+ E F ++ V Y+ V
Sbjct: 188 SALLSNIGQLLVSG---ENFGGLSGVVYALV 215
>gi|350266688|ref|YP_004877995.1| hypothetical protein GYO_2752 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349599575|gb|AEP87363.1| YqgP [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 507
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVV 80
G WR++T HI + HL FN ALWS+G V
Sbjct: 220 GEWWRLLTPIVLHIGITHLAFNTLALWSVGTV 251
>gi|443685589|gb|ELT89143.1| hypothetical protein CAPTEDRAFT_153017 [Capitella teleta]
Length = 236
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 30/155 (19%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVL 109
W ++ S+FSH S LH++ NM LWS V +LG L A+YL +V V
Sbjct: 69 WPMLFSSFSHYSPLHILANMCVLWSFAAPVSHRLGPEQL-LAFYLSAGVV-------SVF 120
Query: 110 GIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLD-LFGFLSLPISFAPFE 168
G Y FK+ V ++G S + G + P S+L LF +P SF+
Sbjct: 121 GSY-----AFKIARMTAVPSLGASGAICGLIGYQCWVNPESQLAILFVNQIIPHSFSAKS 175
Query: 169 SLI-----------FTSIIVPQASFLGHLSGIIVG 192
LI F ++ A GHL+G++ G
Sbjct: 176 GLIALMTFDLMGIVFRWKVLDHA---GHLAGVLFG 207
>gi|169347291|ref|ZP_02866229.1| hypothetical protein CLOSPI_00006 [Clostridium spiroforme DSM 1552]
gi|169293908|gb|EDS76041.1| peptidase, S54 family [Clostridium spiroforme DSM 1552]
Length = 214
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 23/197 (11%)
Query: 7 YEIMEKPATSCIIGICSVIWFYIQKK-----NI--GYSHVGLSYETAVD-GHHWRIITSA 58
++ + P TS +IGIC +++ Y K N+ G G + + ++R+IT+
Sbjct: 3 FDYKKYPITSVVIGICMIVYIYTTLKYGIEMNVYQGIESGGFNPILVIHLKDYYRLITAN 62
Query: 59 FSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQ 117
F H ++H+ N +L + G V+E L LG Y +V+++ + I+ +
Sbjct: 63 FIHFGLMHIFCNCYSLLNFGSVMEYL----LGQKRY-----AIVMIASMFATTIFPCALY 113
Query: 118 RFKLEYFRRVTAVGYSCVVFGWM-TILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSII 176
V G S +FG M +L++ + + F + S ++ S +
Sbjct: 114 LINGSGANSVMG-GISGAIFGLMGALLALAMEFKSVYAYVFKQIASSVIL---MLLISFL 169
Query: 177 VPQASFLGHLSGIIVGY 193
VP S +GH+SG+I G+
Sbjct: 170 VPSISLVGHVSGMIGGF 186
>gi|15613080|ref|NP_241383.1| hypothetical protein BH0517 [Bacillus halodurans C-125]
gi|10173130|dbj|BAB04236.1| BH0517 [Bacillus halodurans C-125]
Length = 248
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 19 IGICSVIWFYIQKKNIGYSHVGLSYETAV-DGHHWRIITSAFSHISVLHLVFNMSAL 74
I I +W ++ G+ + AV G +WR+IT F H+S+ HLVFN AL
Sbjct: 24 IHIALFVWIHLLPGGAWVYATGVGFNLAVSQGEYWRLITPVFLHVSIGHLVFNSFAL 80
>gi|330470718|ref|YP_004408461.1| rhomboid family protein [Verrucosispora maris AB-18-032]
gi|328813689|gb|AEB47861.1| rhomboid family protein [Verrucosispora maris AB-18-032]
Length = 269
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ--LGDVGLGTAYYLQYTLVLVVLSG 105
+G +R++T+ F H +LHL+ NM ALW LG + LG + Y++ G
Sbjct: 102 EGQWYRLVTAMFLHYGILHLLLNMWALWVLGQSLEAVLGPLRFAALYFIAG------FGG 155
Query: 106 LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165
+ + ++ Q + G S +FG + V D L + +
Sbjct: 156 NVAVYVFSPPNQ----------MSAGASTAIFGLFAAIFVIMRRLGRDTSAILPILVI-- 203
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192
+LIFT VPQ S GHL G++ G
Sbjct: 204 ---NLIFT-FTVPQISIAGHLGGLVFG 226
>gi|329944719|ref|ZP_08292798.1| peptidase, S54 family [Actinomyces sp. oral taxon 170 str. F0386]
gi|328529855|gb|EGF56745.1| peptidase, S54 family [Actinomyces sp. oral taxon 170 str. F0386]
Length = 236
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 15 TSCIIGICSV-----IWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVF 69
T +IG+C V ++ + + V +YE WR +T+AF H + +HL F
Sbjct: 34 TKVLIGLCVVAYALEVFAPALDSWLAFVPVAAAYEP------WRFLTTAFLHANYMHLGF 87
Query: 70 NMSALWSLG 78
NM ALW LG
Sbjct: 88 NMWALWVLG 96
>gi|300781971|ref|YP_003762262.1| hypothetical protein AMED_0036 [Amycolatopsis mediterranei U32]
gi|384145172|ref|YP_005527988.1| hypothetical protein RAM_00180 [Amycolatopsis mediterranei S699]
gi|399533854|ref|YP_006546515.1| hypothetical protein AMES_0034 [Amycolatopsis mediterranei S699]
gi|299791485|gb|ADJ41860.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340523326|gb|AEK38531.1| hypothetical protein RAM_00180 [Amycolatopsis mediterranei S699]
gi|398314624|gb|AFO73571.1| hypothetical protein AMES_0034 [Amycolatopsis mediterranei S699]
Length = 266
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 24/166 (14%)
Query: 40 GLSYETAVDGHH--WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQY 96
G Y A GH WRI+T+ F H +H+ NM +LW +G +EQ+ G G L +
Sbjct: 70 GALYGDATLGHGEWWRILTNGFLHYGPIHIAVNMFSLWMMGRSLEQV--CGRGRFLALYF 127
Query: 97 TLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFG 156
+L + +L+ G VG S +FG M +V +L+ G
Sbjct: 128 VSMLGASASVLLFG-----------NPGGYPGTVGASGALFGLMGAYAVTVLKLRLNPTG 176
Query: 157 F-LSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH 201
++L ++ F + +P S GH+ G++ G + L++
Sbjct: 177 LIITLALN-------AFITFGIPGISIFGHIGGLVTGALVTVALLY 215
>gi|146294985|ref|YP_001185409.1| rhomboid family protein [Shewanella putrefaciens CN-32]
gi|145566675|gb|ABP77610.1| Rhomboid family protein [Shewanella putrefaciens CN-32]
Length = 281
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 37/193 (19%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHV---GLSYETAVD----GHHWRIITSAFSHISVL 65
P T + +C +I+ N+G+++ LSY AV WR+ T + H S +
Sbjct: 98 PVTLIVFAVCVLIF---AAMNLGFANPIYETLSYFGAVSQSDLSQFWRVFTPSLLHFSSM 154
Query: 66 HLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEY 123
H++FN+ W LG + ++G L L+L+ ++G L +++
Sbjct: 155 HVIFNLLWWWYLGGRIETRIGTTPL---------LILLFMAGTLP----NIIQYYVSGPN 201
Query: 124 FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE----SLIFTSIIVPQ 179
F ++ V Y+ V + W I+ +++P++ + LP ++ F +L FT I+
Sbjct: 202 FGGLSGVVYAVVGYTW--IMGIRKPAAG------IGLPPAYMGFMMIWLALGFTDILGVS 253
Query: 180 ASFLGHLSGIIVG 192
+ H+ G+ +G
Sbjct: 254 VANGAHIGGLFIG 266
>gi|335041089|ref|ZP_08534206.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
gi|334179066|gb|EGL81714.1| Rhomboid family protein [Caldalkalibacillus thermarum TA2.A1]
Length = 577
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLG 78
++G +WR++T F HI + HL+FN AL+ LG
Sbjct: 245 IEGEYWRLVTPMFLHIGIWHLMFNSLALYFLG 276
>gi|251796149|ref|YP_003010880.1| rhomboid family protein [Paenibacillus sp. JDR-2]
gi|247543775|gb|ACT00794.1| Rhomboid family protein [Paenibacillus sp. JDR-2]
Length = 215
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 22/155 (14%)
Query: 52 WRIITSAFSHISVLHLVFNM-SALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WRIITS F H S H+ FNM S L +E+L L Y + L+ +++ LL G
Sbjct: 66 WRIITSMFMHSSFQHIFFNMFSILVFAPPLERL----LKPVKYAVFYLLCGIIANLLT-G 120
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPS-----SKLDLFGFLSLPISFA 165
+ H L + Y A G VFG +++ + + S+ ++ L + F
Sbjct: 121 VVHGLFGDDRTIYL-STGASGAIYGVFGAFLYIAIFRKAWLDQGSRKTVYTILGFGLVF- 178
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLI 200
S+IVP S LGH+ G + G+ + +GL+
Sbjct: 179 --------SVIVPSVSLLGHVGGGVAGF-LLYGLL 204
>gi|163756802|ref|ZP_02163911.1| rhomboid family protein [Kordia algicida OT-1]
gi|161323191|gb|EDP94531.1| rhomboid family protein [Kordia algicida OT-1]
Length = 298
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
W IIT AF H S HL+ N L+ G + ++ + + V G+L +
Sbjct: 68 WTIITCAFLHASFGHLLSNCIVLYFSGRIF--------FTFFTEKQFITVYAYGILAGSL 119
Query: 112 YHLLIQRFKLEYFR--RVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFES 169
+ LL F L FR TAVG S V + ++ P+ ++LFG + I + +
Sbjct: 120 FFLLAYNF-LPTFRGTEATAVGASAAVLAILVAGAIYAPNYIVNLFGLIQ--IKYWIIAA 176
Query: 170 LIFTSII--VPQASFLG---HLSGIIVGYAIAWGLIHGMN 204
L+ S I +P + G H+ G ++G+ + LI G +
Sbjct: 177 LLVISYISYIPYGNAGGHYAHIGGALIGFLYSKQLIKGND 216
>gi|443326975|ref|ZP_21055612.1| putative membrane protein [Xenococcus sp. PCC 7305]
gi|442793404|gb|ELS02854.1| putative membrane protein [Xenococcus sp. PCC 7305]
Length = 203
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 25/162 (15%)
Query: 44 ETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVL 103
E G WR+I + F H HL+ NM AL+ +G + +L +G Y L++ +L
Sbjct: 47 ENIKQGEWWRLINANFLHFGWFHLISNMLALFFIGSIVEL---SIGVERY----LIVYLL 99
Query: 104 SGLLVLGIYHLLIQRFKLEYFRRVTAV--GYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
SG + + LL Y +V V G S + G + + + L+
Sbjct: 100 SGTGSMLTFALLAN-----YTGQVQVVLMGASAAIMGTIGTMLTTSLADWLE----YRTS 150
Query: 162 ISFAPFESLIFTSI-------IVPQASFLGHLSGIIVGYAIA 196
+ +++IF + I+P SF HL G I+G+ ++
Sbjct: 151 LKAKRLQTVIFVVVLQFILDNIIPNVSFYSHLFGFIIGFVVS 192
>gi|400289188|ref|ZP_10791220.1| rhomboid-like protein [Psychrobacter sp. PAMC 21119]
Length = 202
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 43 YETAVDGHHW-RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLV 101
Y AV+ W R +T F H +HL+FNM L+ G + GL ++ Y V+
Sbjct: 32 YPPAVNNGQWDRFVTHGFIHADSMHLLFNMFTLYFFGRAIE----GLYQSFLFGYGFVVF 87
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
+ +++ I + + Y + G S V+F ++ + P K+ LF + +P
Sbjct: 88 YVLAIIIAMIPSYIKNKNNASYLSLGASGGVSAVLFAFILL----APWEKIYLFAVVPIP 143
>gi|404425001|ref|ZP_11006516.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
gi|403649659|gb|EJZ05001.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
Length = 240
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 50 HHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQ-LGDVGLGTAYYLQ 95
++R++TSAF H V+HL+FNM AL+ +G +EQ LG + G Y L
Sbjct: 67 QYYRLVTSAFLHYGVMHLLFNMWALYVVGPPLEQWLGRLRYGALYALS 114
>gi|325066302|ref|ZP_08124975.1| hypothetical protein AoriK_00701 [Actinomyces oris K20]
Length = 284
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG 78
WR +T+AF H + +HL FNM ALW LG
Sbjct: 118 WRFLTTAFLHANYMHLGFNMWALWVLG 144
>gi|374316397|ref|YP_005062825.1| hypothetical protein [Sphaerochaeta pleomorpha str. Grapes]
gi|359352041|gb|AEV29815.1| putative membrane protein [Sphaerochaeta pleomorpha str. Grapes]
Length = 213
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 24/156 (15%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSG 105
+ G+ W+ T F H H+ FNM +L+ G +VEQ +G+ +L + L+ ++SG
Sbjct: 54 LHGYIWQFFTYMFVHGGFSHIFFNMLSLFIFGTMVEQ----RVGSKEFLLFYLLTGIVSG 109
Query: 106 LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165
++ Y L V VG S ++G + + +V P +++ +FG +PI A
Sbjct: 110 IISFLCY--------LAAGTNVILVGASGAIYGVLLMFAVFYPYARVFVFGL--IPIR-A 158
Query: 166 PFESLIFTSIIVPQASF--------LGHLSGIIVGY 193
P +++ I + F L HLSG++ Y
Sbjct: 159 PVLVVLYAFIELSSQVFGAGGNVAHLTHLSGLLFAY 194
>gi|261341920|ref|ZP_05969778.1| rhomboid protease GlpG [Enterobacter cancerogenus ATCC 35316]
gi|288315824|gb|EFC54762.1| rhomboid protease GlpG [Enterobacter cancerogenus ATCC 35316]
Length = 276
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 21/153 (13%)
Query: 4 PLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLS----YETAVDGHHWRIITSAF 59
P + E+ ++ + + I +I +G V L+ Y+ ++ WR T
Sbjct: 84 PFIATLRERAGPFTLLLMAACILVFIIMNVVGDQPVMLALAWPYDPSLQFDVWRYFTHTL 143
Query: 60 SHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQ 117
H SV+H++FN+ W LG V ++LG L +VL V+S LL + H
Sbjct: 144 MHFSVMHILFNLLWWWYLGGIVEKRLGSGKL---------IVLTVISALLSGYVQH---- 190
Query: 118 RFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
+F +F ++ V Y+ + + W+ + P S
Sbjct: 191 KFSGPWFGGLSGVVYALMGYVWLR--GERDPES 221
>gi|406675119|ref|ZP_11082309.1| hypothetical protein HMPREF1170_00517 [Aeromonas veronii AMC35]
gi|404627889|gb|EKB24678.1| hypothetical protein HMPREF1170_00517 [Aeromonas veronii AMC35]
Length = 277
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 25/156 (16%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSG 105
D WR T A H SVLHLVFN+ W L G +EQ LG+ L++++L G
Sbjct: 134 TDWQAWRYFTPALIHFSVLHLVFNLLWWWYLGGQIEQ----RLGSG-----KLLILLLVG 184
Query: 106 LLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165
+ I F ++ V Y+ + + W+ SKL L+LP +
Sbjct: 185 AALPNIAEFFASG---PLFGGLSGVVYALLGYCWL--------RSKLQPACGLTLPPALM 233
Query: 166 PF----ESLIFTSIIVPQASFLGHLSGIIVGYAIAW 197
F L F ++ + + HL+G++VG W
Sbjct: 234 GFMLFWMVLGFFDMLGTSTANIAHLTGLLVGLLQGW 269
>gi|363419988|ref|ZP_09308085.1| serine peptidase [Rhodococcus pyridinivorans AK37]
gi|359736660|gb|EHK85603.1| serine peptidase [Rhodococcus pyridinivorans AK37]
Length = 308
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 46 AVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLV 99
A G + RI+ S F H +LHL NM ALW +G +L LG A YL LV
Sbjct: 128 AAHGEYIRILGSGFLHFGLLHLAVNMFALWVIGRDTEL---VLGRARYLSVYLV 178
>gi|332638068|ref|ZP_08416931.1| membrane-associated serine protease [Weissella cibaria KACC 11862]
Length = 233
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 11 EKPATSCIIGICSVI--WFYIQKKNIGYS-----HVGLSYETAVDGHH--WRIITSAFSH 61
PAT+ ++ + ++ W +Q + + H G + AV H WR+IT+ F H
Sbjct: 11 ATPATAGLVTVMVLVYLWEVLQAHSFTINSQVLFHSGAQFSPAVYQLHQWWRLITAGFLH 70
Query: 62 ISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
++ HL FNM L+ +G +L ++ LG +L + V+ L+ L
Sbjct: 71 VTFSHLAFNMITLYFIG---RLLEIELGPWRFLALFFLTVISGNLMSLA 116
>gi|145301118|ref|YP_001143959.1| GlpG protein [Aeromonas salmonicida subsp. salmonicida A449]
gi|418362965|ref|ZP_12963582.1| GlpG protein [Aeromonas salmonicida subsp. salmonicida 01-B526]
gi|142853890|gb|ABO92211.1| GlpG protein [Aeromonas salmonicida subsp. salmonicida A449]
gi|356685831|gb|EHI50451.1| GlpG protein [Aeromonas salmonicida subsp. salmonicida 01-B526]
Length = 277
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQ 82
D WR T AF H S+LHLVFN+ W L G +EQ
Sbjct: 134 TDWQAWRYFTPAFIHFSILHLVFNLLWWWYLGGQIEQ 170
>gi|66811524|ref|XP_639942.1| rhomboid family protein [Dictyostelium discoideum AX4]
gi|60466888|gb|EAL64932.1| rhomboid family protein [Dictyostelium discoideum AX4]
Length = 341
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 94/201 (46%), Gaps = 25/201 (12%)
Query: 3 RPLFYEIMEKPAT--SCIIGICSVIWFYIQKKNIGYSH---VGLSYETAVDGHHWR---I 54
+ +Y+ +K ++ IIGI IW ++ + YS +G ++ ++D + +
Sbjct: 132 KDKYYKSAKKSSSVIYAIIGINVAIWMFLNSDD-SYSFQRMIGKNFMLSLDNFKSQPITL 190
Query: 55 ITSAFSHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIY 112
+TS F+H HL+ M AL+SLG V+ LG +A++ Y + +LSG+ L +
Sbjct: 191 LTSMFAHTDGFHLL--MFALYSLGPNVLYSLGS----SAFFGMY-MGAGILSGVGFLAVQ 243
Query: 113 HLLIQR--FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF---APF 167
+ + + + A+G S + G + + + P L+++G + +P + A F
Sbjct: 244 KFYNSKNYYDQKRLQNTRALGASGAISGVLMLFACLYPRMTLNIYGIIPVPAALLVSAYF 303
Query: 168 ESLIFTSIIVPQA--SFLGHL 186
++ + Q +GHL
Sbjct: 304 AYDLYNEVFRKQTGVCHVGHL 324
>gi|400288453|ref|ZP_10790485.1| serine endopeptidase [Psychrobacter sp. PAMC 21119]
Length = 573
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 40 GLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVV 80
GL+ + G +W+++TS F H ++HLV +++ L+S+G +
Sbjct: 409 GLTMDALQAGQYWQVVTSLFVHAGIIHLVMSLAMLFSVGYI 449
>gi|359771058|ref|ZP_09274523.1| rhomboid family protein [Gordonia effusa NBRC 100432]
gi|359311809|dbj|GAB17301.1| rhomboid family protein [Gordonia effusa NBRC 100432]
Length = 221
Score = 37.4 bits (85), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGV 79
G +WR++T+ F H+S++HL NM +L+ LGV
Sbjct: 53 GEYWRLLTAGFLHLSLIHLGVNMLSLYVLGV 83
>gi|320108412|ref|YP_004184002.1| rhomboid family protein [Terriglobus saanensis SP1PR4]
gi|319926933|gb|ADV84008.1| Rhomboid family protein [Terriglobus saanensis SP1PR4]
Length = 280
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 20/89 (22%)
Query: 3 RPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVD-------------- 48
R F + PAT ++GI ++ ++ GY L + D
Sbjct: 32 RSRFAGVKLSPATYLLLGINIAVFLWM-----GYRGADLRLPSLADLIRFGANNSDLVIV 86
Query: 49 -GHHWRIITSAFSHISVLHLVFNMSALWS 76
G WRII++ F H+ ++HL NM LW+
Sbjct: 87 HGQWWRIISAMFVHVGLIHLATNMWCLWN 115
>gi|405118782|gb|AFR93556.1| hypothetical protein CNAG_04056 [Cryptococcus neoformans var.
grubii H99]
Length = 335
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
G W ++TSAFSH + H+ N L+ L +G+A +L L V S L+
Sbjct: 173 SGRIWTLVTSAFSHSNGTHIFVNCLGLYFLAPAAA---SIMGSASFLGLYLGAGVFSSLV 229
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA-- 165
LG YH + R + G S ++ + P+S++ +F + +P+ A
Sbjct: 230 SLG-YH------RFSRHRWWGSEGASGAIYACLAYYGALFPNSQVLMFFVIPMPVWVAIG 282
Query: 166 -PFESLIFTSIIVPQA--SFLGHLSGIIVGYAIAWGLIHG 202
F ++++ P + GHL GII G A L G
Sbjct: 283 GIFAWDFYSAVKRPNSGTDSAGHLGGIIYGLGAAMALKRG 322
>gi|335419912|ref|ZP_08550956.1| rhomboid family protein [Salinisphaera shabanensis E1L3A]
gi|334895802|gb|EGM33967.1| rhomboid family protein [Salinisphaera shabanensis E1L3A]
Length = 218
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W++++ F H HL FNM LW G VVEQ+ G +L Y LV VV +GL +
Sbjct: 64 WQLLSYGFLHGGFGHLFFNMFGLWMFGRVVEQV----WGGQRFLLYYLVCVVGAGLTQVL 119
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
LL + V VG S +FG + + P++++ L
Sbjct: 120 TLALLSPG------QPVPTVGASGGLFGVLLAFGMMFPNARVML 157
>gi|227496597|ref|ZP_03926875.1| rhomboid family protein [Actinomyces urogenitalis DSM 15434]
gi|226833877|gb|EEH66260.1| rhomboid family protein [Actinomyces urogenitalis DSM 15434]
Length = 282
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 8 EIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHL 67
+ + T+ +I C V++ + + G + A+ WR +++AF H S++HL
Sbjct: 73 AVQDARITTGLIAACVVVYVIQMLRPSLTTDFGFAPVVALS-QPWRFLSTAFLHGSLMHL 131
Query: 68 VFNMSALWSLG 78
FNM ALW G
Sbjct: 132 AFNMWALWVCG 142
>gi|302535555|ref|ZP_07287897.1| conserved hypothetical protein [Streptomyces sp. C]
gi|302444450|gb|EFL16266.1| conserved hypothetical protein [Streptomyces sp. C]
Length = 290
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 23/164 (14%)
Query: 40 GLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLV 99
G E G + R++TS F H+ H+ NM ALW +G + LG Y L
Sbjct: 112 GAPEEGISTGQYHRLLTSVFLHVEWWHIFGNMLALWVIGGPL---EAALGRVRY----LA 164
Query: 100 LVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVK---QPSSKLDLFG 156
L +LSGL + +LL + A G C + G +L+ + + L G
Sbjct: 165 LYLLSGLGGSALVYLLTA----PNTPTLGASGAVCGLLGATVVLARRLRYEMRPVLVTLG 220
Query: 157 FLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLI 200
+ L ++F PF L S+ H+ G++ G +A GL+
Sbjct: 221 LMLL-VTFVPFGGL--------SVSWQAHIGGLVTGALVALGLL 255
>gi|188589117|ref|YP_001920138.1| rhomboid family protein [Clostridium botulinum E3 str. Alaska E43]
gi|188499398|gb|ACD52534.1| rhomboid family protein [Clostridium botulinum E3 str. Alaska E43]
Length = 321
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 68/164 (41%), Gaps = 38/164 (23%)
Query: 48 DGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGL 106
G WR++ AF H + HL+FNM AL+ LG VE++ G YL V + S
Sbjct: 181 QGEVWRLVACAFLHGGITHLLFNMYALYILGPQVEKI----FGIKKYLIIYFVSAITSSS 236
Query: 107 LVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM---TILSVKQPSSK-----LDLFG-- 156
L + + + +VG S +FG + + S+KQ L+L G
Sbjct: 237 LGVALN------------KNTISVGASGAIFGLLGAILVFSIKQRHKVEKEYILNLLGVI 284
Query: 157 FLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLI 200
L+L I F + LGH+ G + G +A LI
Sbjct: 285 ILNLLIGFN-----------ISNIDNLGHIGGFLGGIIMARILI 317
>gi|114565091|ref|YP_752605.1| rhomboid family protein [Shewanella frigidimarina NCIMB 400]
gi|114336384|gb|ABI73766.1| Rhomboid family protein [Shewanella frigidimarina NCIMB 400]
Length = 283
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 32/176 (18%)
Query: 33 NIGYSHV---GLSYETAVDGHH----WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGD 85
N+G++ LS+ +AV WR+ T + H S +H++FN+ W LG +
Sbjct: 115 NLGFADAIFTKLSFFSAVADSDVNQVWRVFTPSLMHFSAMHIIFNLLWWWYLGGKIE--- 171
Query: 86 VGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKL-EYFRRVTAVGYSCVVFGWMTILS 144
LGT + L L+V++G L ++Q + F ++ V Y+ V + W+ +
Sbjct: 172 TNLGT----RPLLFLLVVAGTL-----PNIVQFYMTGPNFGGLSGVVYAVVGYTWL--MG 220
Query: 145 VKQPSSKLDLFGFLSLPISFAPFE----SLIFTSIIVPQASFLGHLSGIIVGYAIA 196
+++PS +SLP S+ F L FT ++ + H++G+ VG A A
Sbjct: 221 IRKPSCG------ISLPQSYMGFMLVWLVLGFTDVLGMPIANGAHIAGLCVGLAQA 270
>gi|317476443|ref|ZP_07935692.1| rhomboid family protein [Bacteroides eggerthii 1_2_48FAA]
gi|316907469|gb|EFV29174.1| rhomboid family protein [Bacteroides eggerthii 1_2_48FAA]
Length = 227
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 29/181 (16%)
Query: 37 SHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQ 95
++GL + A D + ++IT F H HL FNM A+W G ++EQ+ G +L
Sbjct: 34 QYLGLHFFLAGDFNAAQLITYMFMHGGFTHLFFNMFAVWMFGRILEQV----WGPKRFLF 89
Query: 96 YTLVLVVLSGLL-----------VLGIYHLLIQRFKL----EYFRRVTAVGYSCVVFGWM 140
Y LV + +GL+ VL Y + + + EY +T VG S V+ +
Sbjct: 90 YYLVCGIGAGLIQELVQYIHYETVLSAYDSVNTGYSVIPMKEYLNMMTTVGASGSVYAIL 149
Query: 141 TILSVKQPSSKLDLFGFLSLPISFAPF---ESLI-----FTSIIVPQASFLGHLSGIIVG 192
+ P+ + +F L PI F +LI F + + HL G+I G
Sbjct: 150 LGFGMLFPNQPMFIFP-LPFPIKAKYFVIGYALIELYSGFANNPGDNVAHFAHLGGMIFG 208
Query: 193 Y 193
+
Sbjct: 209 F 209
>gi|218131483|ref|ZP_03460287.1| hypothetical protein BACEGG_03101 [Bacteroides eggerthii DSM 20697]
gi|217986415|gb|EEC52752.1| peptidase, S54 family [Bacteroides eggerthii DSM 20697]
Length = 227
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 29/181 (16%)
Query: 37 SHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQ 95
++GL + A D + ++IT F H HL FNM A+W G ++EQ+ G +L
Sbjct: 34 QYLGLHFFLAGDFNAAQLITYMFMHGGFTHLFFNMFAVWMFGRILEQV----WGPKRFLF 89
Query: 96 YTLVLVVLSGLL-----------VLGIYHLLIQRFKL----EYFRRVTAVGYSCVVFGWM 140
Y LV + +GL+ VL Y + + + EY +T VG S V+ +
Sbjct: 90 YYLVCGIGAGLIQELVQYIHYETVLSAYDSVNTGYSVIPMKEYLNMMTTVGASGSVYAIL 149
Query: 141 TILSVKQPSSKLDLFGFLSLPISFAPF---ESLI-----FTSIIVPQASFLGHLSGIIVG 192
+ P+ + +F L PI F +LI F + + HL G+I G
Sbjct: 150 LGFGMLFPNQPMFIFP-LPFPIKAKYFVIGYALIELYSGFANNPGDNVAHFAHLGGMIFG 208
Query: 193 Y 193
+
Sbjct: 209 F 209
>gi|84624764|ref|YP_452136.1| integral membrane protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84368704|dbj|BAE69862.1| integral membrane protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 254
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 64/150 (42%), Gaps = 21/150 (14%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W+++T AF H HL FNM AL+ G +EQ G +L Y LV V + G
Sbjct: 85 WQLLTYAFLHGGFNHLFFNMLALFMFGAPLEQT----WGQKRFLTYYLVCVAGA-----G 135
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP-------IS 163
+ LLI F VG S VFG + + P+ ++ L F +P I
Sbjct: 136 VCQLLIAWFTQS---GAPVVGASGGVFGLLLAYGMLFPNQRVMLL-FPPIPMKARTFVIV 191
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGY 193
F E + + P + HL G++ G+
Sbjct: 192 FGAIELFLGATGWQPGVAHFAHLGGMLFGW 221
>gi|420032461|ref|ZP_14546275.1| intramembrane serine protease GlpG, partial [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
gi|397397437|gb|EJJ89112.1| intramembrane serine protease GlpG, partial [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
Length = 222
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 21/143 (14%)
Query: 13 PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITSAFSHISVLHLV 68
P T I+ IC + +I + +G V Y+ ++ WR + AF H S++H++
Sbjct: 95 PFTWAILLICIAV--FILQNLLGDQPVMIWLAWPYDPSLQFEAWRYFSHAFMHFSLMHIL 152
Query: 69 FNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127
FN+ W L G VE+ +G G +V+ V+S LL + H +F +F +
Sbjct: 153 FNLLWWWYLGGAVEK--RIGSGK------LVVITVISALLSGFVQH----QFSGPWFGGL 200
Query: 128 TAVGYSCVVFGWMTILSVKQPSS 150
+ V Y+ + + W+ + P S
Sbjct: 201 SGVVYALMGYVWLR--GERDPQS 221
>gi|393782838|ref|ZP_10371020.1| hypothetical protein HMPREF1071_01888 [Bacteroides salyersiae
CL02T12C01]
gi|392672223|gb|EIY65693.1| hypothetical protein HMPREF1071_01888 [Bacteroides salyersiae
CL02T12C01]
Length = 225
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 35/184 (19%)
Query: 37 SHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYL- 94
+++GL + A D + ++IT F H HL FNM A+W G ++EQ+ YY+
Sbjct: 32 NYLGLHFFMAEDFNPAQLITYMFMHGGFTHLFFNMFAVWMFGRILEQVWGPKRFLFYYIL 91
Query: 95 ------------QYTLVLVVLSGLLVLGIYHLLIQRFK-----LEYFRRVTAVGYSCVVF 137
Q+ VLSG + ++Q F EY + VG S V+
Sbjct: 92 CGIGAGIIQEIVQFVEYQTVLSG-------YSMVQTFSGTIPMSEYLNMMNTVGASGAVY 144
Query: 138 GWMTILSVKQPSSKLDLFGFLSLPISFAPF---ESLI-----FTSIIVPQASFLGHLSGI 189
+ + P+ +L +F L PI F +LI F + + HL G+
Sbjct: 145 AILLGFGMLFPNQQLFIFP-LPFPIKAKYFVIGYALIELYSGFANNPNDNVAHFAHLGGM 203
Query: 190 IVGY 193
I G+
Sbjct: 204 IFGF 207
>gi|325297592|ref|YP_004257509.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
gi|324317145|gb|ADY35036.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
Length = 963
Score = 37.4 bits (85), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQ-LGDVGLGTAYYL 94
G WR +T F HI ++HL+ NM AL +G+ +EQ +G L TAY L
Sbjct: 583 GDWWRTVTCNFIHIGIIHLLMNMYALLYIGIFLEQIIGSRKLMTAYLL 630
>gi|299142060|ref|ZP_07035194.1| rhomboid family protein [Prevotella oris C735]
gi|298576522|gb|EFI48394.1| rhomboid family protein [Prevotella oris C735]
Length = 289
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 40 GLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVV 80
GL + A D H ++++T F H ++ H+ FNM ALW G+V
Sbjct: 13 GLHFFLASDFHFYQLVTYMFMHANLEHIFFNMFALWMFGMV 53
>gi|110667202|ref|YP_657013.1| rhomboid family protein/GlpG-like protein [Haloquadratum walsbyi
DSM 16790]
gi|109624949|emb|CAJ51362.1| rhomboid family protein [Haloquadratum walsbyi DSM 16790]
Length = 306
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 21/157 (13%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
G+ W +TS F+H H+ FN AL+ G VVE+ D TA ++ V++GL
Sbjct: 130 GYIWTWLTSIFAHGGFAHIAFNSIALYFFGPVVERYLDTKRFTALFIGAG----VIAGLA 185
Query: 108 VLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPI----- 162
+G L + VG S + G + +L+V P K+ L+ + +P+
Sbjct: 186 QIGSTLLTMGP------TGAGVVGASGAIMGVLGVLTVLNPKLKVYLYFIIPMPLWVLTF 239
Query: 163 SFAPFE-----SLIFTSIIVPQASFLGHLSGIIVGYA 194
FA F II + L HL+G+++G A
Sbjct: 240 GFAAFSIVAGFGAAGGGIIGGNVAHLAHLAGLVIGLA 276
>gi|238799344|ref|ZP_04642784.1| Rhomboid protease glpG [Yersinia mollaretii ATCC 43969]
gi|238716812|gb|EEQ08688.1| Rhomboid protease glpG [Yersinia mollaretii ATCC 43969]
Length = 278
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 13 PATSCIIGICSVIWFYIQ--KKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFN 70
P T ++ +C I+ +Q N S + + + WR I+ AF H S+LH++FN
Sbjct: 96 PLTLSVMMLCIAIYILMQIFGDNTVMSWLAWPRDESQYLQIWRWISPAFLHFSLLHILFN 155
Query: 71 MSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSG 105
+ W LG Q+ + LGT L T+V + SG
Sbjct: 156 LMWWWYLG--GQM-EKRLGTGKLLVLTIVSALFSG 187
>gi|418459787|ref|ZP_13030898.1| membrane protein [Saccharomonospora azurea SZMC 14600]
gi|359740100|gb|EHK88949.1| membrane protein [Saccharomonospora azurea SZMC 14600]
Length = 267
Score = 37.4 bits (85), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLG 78
WR++TS F H ++HL NM ALW LG
Sbjct: 92 WRLLTSGFLHYGLIHLAMNMLALWVLG 118
>gi|212559230|gb|ACJ31684.1| Rhomboid-like protein [Shewanella piezotolerans WP3]
Length = 279
Score = 37.4 bits (85), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 27/147 (18%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
WR+ T + H S +H++FN+ W L G +E +G + L LLV G
Sbjct: 141 WRLFTPSLIHFSAMHIIFNLLWWWYLGGKIEN--KIGFKPLFIL-----------LLVGG 187
Query: 111 IYHLLIQRFKL-EYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL----FGFLSLPISFA 165
++Q F F ++ V Y+ V + W I+ VK+P S + L GF+ L + F
Sbjct: 188 TLPNILQYFMAGPNFGGLSGVVYAVVGYTW--IMGVKRPESGIGLPPAYIGFMLLWLVFG 245
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192
FT + + HL G++VG
Sbjct: 246 ------FTDMFGLSIANGAHLGGLLVG 266
>gi|403060361|ref|YP_006648578.1| intramembrane serine protease GlpG [Pectobacterium carotovorum
subsp. carotovorum PCC21]
gi|402807687|gb|AFR05325.1| intramembrane serine protease GlpG [Pectobacterium carotovorum
subsp. carotovorum PCC21]
Length = 277
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 35 GYSHVGLSYETAVDGHH---WRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGT 90
GY V + +G WR + H S+LH++FN+ W L G VE++ LGT
Sbjct: 117 GYESVMVWLAFPAEGQQIEVWRWFSHVLLHFSLLHILFNLMWWWYLGGPVEKV----LGT 172
Query: 91 AYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
L TLV ++SG F +F ++ V Y+ + + W+ ++P
Sbjct: 173 GKLLVITLVSALVSGWAQ--------SWFSGTHFGGLSGVVYALMGYVWLR--GEREPD- 221
Query: 151 KLDLFGFLSLPISFAPFESLIFTS----IIVPQASFLGHLSGIIVGYAIA 196
G+LS+P S F L + I+ + H++G++VG +A
Sbjct: 222 -----GYLSMPRSLMAFALLWLVAGYFDILGMSIANAAHVAGLVVGLLMA 266
>gi|445115309|ref|ZP_21378184.1| hypothetical protein HMPREF0662_01240 [Prevotella nigrescens
F0103]
gi|444840420|gb|ELX67452.1| hypothetical protein HMPREF0662_01240 [Prevotella nigrescens
F0103]
Length = 319
Score = 37.4 bits (85), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 39 VGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVV 80
+GL + A D H W++IT F H S +H++ NM LW G+V
Sbjct: 36 LGLHFFLADDFHLWQLITYMFMHGSFMHILMNMFMLWMFGMV 77
>gi|58582905|ref|YP_201921.1| hypothetical protein XOO3282 [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|58427499|gb|AAW76536.1| integral membrane protein [Xanthomonas oryzae pv. oryzae KACC
10331]
Length = 260
Score = 37.4 bits (85), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 64/150 (42%), Gaps = 21/150 (14%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLG 110
W+++T AF H HL FNM AL+ G +EQ G +L Y LV V + G
Sbjct: 91 WQLLTYAFLHGGFNHLFFNMLALFMFGAPLEQT----WGQKRFLTYYLVCVAGA-----G 141
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP-------IS 163
+ LLI F VG S VFG + + P+ ++ L F +P I
Sbjct: 142 VCQLLIAWFTQS---GAPVVGASGGVFGLLLAYGMLFPNQRVMLL-FPPIPMKARTFVIV 197
Query: 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGY 193
F E + + P + HL G++ G+
Sbjct: 198 FGAIELFLGATGWQPGVAHFAHLGGMLFGW 227
>gi|397690913|ref|YP_006528167.1| hypothetical protein MROS_1922 [Melioribacter roseus P3M]
gi|395812405|gb|AFN75154.1| Hypothetical protein MROS_1922 [Melioribacter roseus P3M]
Length = 306
Score = 37.4 bits (85), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 25/166 (15%)
Query: 35 GYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYL 94
G+ +G Y + W+ IT F H S H++FNM LW G+ ++ ++ +G +L
Sbjct: 66 GFDQLGEPYNFQI----WQFITYQFMHGSFTHILFNMFMLWMFGM--EIANL-MGPRKFL 118
Query: 95 QYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTA--VGYSCVVFGWMTILSVKQPSSKL 152
+ L + +GL + + LL V+A +G S VFG M ++ P +
Sbjct: 119 IFYLACGIGAGLFQILLSPLL---------GSVSAPTIGASGAVFGIMIAFAMFFPDRYI 169
Query: 153 DLFGFLSLPISFAPFESLI----FTSIIVPQ-ASFLGHLSGIIVGY 193
LF FL +PI +++ F S+ P + L H+ G + G+
Sbjct: 170 -LFYFL-IPIKAKYLIAILVLFEFVSVNEPTIVAHLAHIGGAVTGF 213
>gi|224537591|ref|ZP_03678130.1| hypothetical protein BACCELL_02471 [Bacteroides cellulosilyticus
DSM 14838]
gi|423226890|ref|ZP_17213355.1| hypothetical protein HMPREF1062_05541 [Bacteroides cellulosilyticus
CL02T12C19]
gi|224520788|gb|EEF89893.1| hypothetical protein BACCELL_02471 [Bacteroides cellulosilyticus
DSM 14838]
gi|392626761|gb|EIY20804.1| hypothetical protein HMPREF1062_05541 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 244
Score = 37.4 bits (85), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 37 SHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQ 95
++GL + A D + ++IT F H HL FNM A+W G ++EQ+ G +L
Sbjct: 34 RYLGLHFFLADDFNVAQLITYMFMHGGFTHLFFNMFAVWMFGRILEQV----WGPKRFLS 89
Query: 96 YTLVLVVLSGLLVLGIYHLLIQRFK 120
Y ++ + +GL+ + + ++ IQ K
Sbjct: 90 YYMICGIGAGLISMLVTYIRIQAAK 114
>gi|148653480|ref|YP_001280573.1| rhomboid family protein [Psychrobacter sp. PRwf-1]
gi|148572564|gb|ABQ94623.1| Rhomboid family protein [Psychrobacter sp. PRwf-1]
Length = 248
Score = 37.4 bits (85), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLL 107
WR+I+SAF HI ++HL+FN A++ G Q +V G+ +L L+ V LL
Sbjct: 59 WRLISSAFLHIGLMHLLFNCFAMYYFG---QAAEVSFGSIKFLLLFLLSAVGGNLL 111
>gi|406830563|ref|ZP_11090157.1| rhomboid family protein [Schlesneria paludicola DSM 18645]
Length = 295
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108
G WR+IT F H +HL+FNM +W+ + Q+ + +G+ +L +V+ LS
Sbjct: 150 GEVWRLITPIFLHFGPMHLIFNM--IWTYQLGTQI-EPKIGSFKFLLMVIVIAALSNAA- 205
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP---ISFA 165
+ + R G S VV+G + V+ KL+ L LP I+F
Sbjct: 206 -----------QFWFHPRNLFGGMSGVVYGLFGYIWVR---GKLEPESGLFLPQQTITFM 251
Query: 166 PFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
++ + ++P + H G++ G AIA
Sbjct: 252 LLWHVLCSVGVIPNVANWAHGGGLLAGVAIA 282
>gi|330841208|ref|XP_003292594.1| hypothetical protein DICPUDRAFT_157323 [Dictyostelium purpureum]
gi|325077157|gb|EGC30889.1| hypothetical protein DICPUDRAFT_157323 [Dictyostelium purpureum]
Length = 326
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 32/169 (18%)
Query: 18 IIGICSVIWFYIQKKNIGYSHVGLSYETAVD-----------GHHWRIITSAFSHISVLH 66
+IGI + + YI S+ S++ +D +ITS F+H S H
Sbjct: 115 LIGINTAAFLYIN------SNDDYSFQRQIDRGFLLSLDNFFSQPLTLITSFFAHKSFGH 168
Query: 67 LVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHL-LIQRFKLEYFR 125
+FNM L+++G + L +G + + L + G L L Y+ K ++F
Sbjct: 169 FLFNMVGLYTIGPMV-LSTIGASSFFGLYMASGIASGLGFLFLQKYYRDQANGHKFDFFG 227
Query: 126 RVT-------------AVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP 161
R T A+G S ++G M + P + L+L+G + +P
Sbjct: 228 RNTNQYQYSLQRSNQKALGASGAIYGVMATFACLFPKAILNLYGVIPIP 276
>gi|119475859|ref|ZP_01616211.1| hypothetical protein GP2143_04700 [marine gamma proteobacterium
HTCC2143]
gi|119450486|gb|EAW31720.1| hypothetical protein GP2143_04700 [marine gamma proteobacterium
HTCC2143]
Length = 288
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 27/157 (17%)
Query: 50 HHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVL 109
+WR+IT F H ++H+ FNM+ W LG +L LQ + V++ +S ++
Sbjct: 136 QYWRLITPIFLHFGLMHVAFNMALFWFLGQRIEL----------LQGSRVMLGISLMIGF 185
Query: 110 GIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE- 168
G +++ + F ++ V Y + +GW + + +P L +P S F
Sbjct: 186 G-SNMMQAAAETAIFGGMSGVVYGLLGYGW--VWGLMRPEKN------LQIPNSILYFSV 236
Query: 169 ---SLIFTSII----VPQASFLGHLSGIIVGYAIAWG 198
L F ++ + + + + HL G+I+G I G
Sbjct: 237 AMMVLGFVGVVGILGIGKVANIAHLGGLIMGCLIGVG 273
>gi|365140731|ref|ZP_09346710.1| rhomboid protease glpG [Klebsiella sp. 4_1_44FAA]
gi|425074490|ref|ZP_18477593.1| rhomboid protease glpG [Klebsiella pneumoniae subsp. pneumoniae
WGLW1]
gi|425083566|ref|ZP_18486663.1| rhomboid protease glpG [Klebsiella pneumoniae subsp. pneumoniae
WGLW2]
gi|425085126|ref|ZP_18488219.1| rhomboid protease glpG [Klebsiella pneumoniae subsp. pneumoniae
WGLW3]
gi|425093681|ref|ZP_18496765.1| rhomboid protease glpG [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
gi|363653387|gb|EHL92357.1| rhomboid protease glpG [Klebsiella sp. 4_1_44FAA]
gi|405595955|gb|EKB69325.1| rhomboid protease glpG [Klebsiella pneumoniae subsp. pneumoniae
WGLW1]
gi|405598767|gb|EKB71969.1| rhomboid protease glpG [Klebsiella pneumoniae subsp. pneumoniae
WGLW2]
gi|405608541|gb|EKB81492.1| rhomboid protease glpG [Klebsiella pneumoniae subsp. pneumoniae
WGLW3]
gi|405610656|gb|EKB83451.1| rhomboid protease glpG [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
Length = 274
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 23/158 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITS 57
P F + P T I+ IC + +I + +G V Y+ ++ WR +
Sbjct: 82 PFFATLRHNAGPFTWAILLICIAV--FILQNLLGDQPVMIWLAWPYDPSLQFEAWRYFSH 139
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
AF H S++H++FN+ W L G VE+ +G G +V+ V+S LL + H
Sbjct: 140 AFMHFSLMHILFNLLWWWYLGGAVEK--RIGSGK------LVVITVISALLSGFVQH--- 188
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
+F +F ++ V Y+ + + W+ + P S + L
Sbjct: 189 -QFSGPWFGGLSGVVYALMGYVWLR--GERDPQSGIYL 223
>gi|323490567|ref|ZP_08095773.1| hypothetical protein GPDM_14436 [Planococcus donghaensis MPA1U2]
gi|323395833|gb|EGA88673.1| hypothetical protein GPDM_14436 [Planococcus donghaensis MPA1U2]
Length = 202
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 33/199 (16%)
Query: 13 PATSCIIGICSVIWFYIQKKNIG----YSHVGLSYETAVDGHHWRIITSAFSHISVLHLV 68
P S +I + +++ + ++G + VG ++ A +G WR T F H V+HL+
Sbjct: 16 PVVSTLIALNLLVYVLMWLPSLGQWIYFYGVGSNFYIA-EGQWWRFFTPMFLHNGVMHLL 74
Query: 69 FNMSALWSLGV-VEQL-GDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRR 126
FNM +L+ G +E+L G V T Y +L+G + L L+YF
Sbjct: 75 FNMFSLFLFGPELERLTGKVRFTTIY---------LLAGFFASAATYFLQ---PLDYFH- 121
Query: 127 VTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLP----ISFAPFESLIFTSIIVPQASF 182
VG S +FG V L +G +LP I I + + P +
Sbjct: 122 ---VGASGAIFG------VFGAFGALVYYGGRALPQLKQIILPIIVISIVMTFLTPNVNV 172
Query: 183 LGHLSGIIVGYAIAWGLIH 201
H++G+I G+ I H
Sbjct: 173 TAHIAGMITGFLIGLSYFH 191
>gi|206577327|ref|YP_002236206.1| intramembrane serine protease GlpG [Klebsiella pneumoniae 342]
gi|290511999|ref|ZP_06551367.1| GlpG protein [Klebsiella sp. 1_1_55]
gi|226729482|sp|B5XTR5.1|GLPG_KLEP3 RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|206566385|gb|ACI08161.1| peptidase, S54 (rhomboid) family [Klebsiella pneumoniae 342]
gi|289775789|gb|EFD83789.1| GlpG protein [Klebsiella sp. 1_1_55]
Length = 276
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 23/158 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITS 57
P F + P T I+ IC + +I + +G V Y+ ++ WR +
Sbjct: 84 PFFATLRHNAGPFTWAILLICIAV--FILQNLLGDQPVMIWLAWPYDPSLQFEAWRYFSH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
AF H S++H++FN+ W L G VE+ +G G +V+ V+S LL + H
Sbjct: 142 AFMHFSLMHILFNLLWWWYLGGAVEK--RIGSGK------LVVITVISALLSGFVQH--- 190
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
+F +F ++ V Y+ + + W+ + P S + L
Sbjct: 191 -QFSGPWFGGLSGVVYALMGYVWLR--GERDPQSGIYL 225
>gi|424931398|ref|ZP_18349770.1| Rhomboid protease glpG (Intramembrane serine protease) [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|407805585|gb|EKF76836.1| Rhomboid protease glpG (Intramembrane serine protease) [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
Length = 276
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 23/158 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITS 57
P F + P T I+ IC + +I + +G V Y+ ++ WR +
Sbjct: 84 PFFATLRHNAGPFTWAILLICIAV--FILQNLLGDQPVMIWLAWPYDPSLQFEAWRYFSH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
AF H S++H++FN+ W L G VE+ +G G +V+ V+S LL + H
Sbjct: 142 AFMHFSLMHILFNLLWWWYLGGAVEK--RIGSGK------LVVITVISALLSGFVQH--- 190
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
+F +F ++ V Y+ + + W+ + P S + L
Sbjct: 191 -QFSGPWFGGLSGVVYALMGYVWLR--GERDPQSGIYL 225
>gi|227112207|ref|ZP_03825863.1| intramembrane serine protease GlpG [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 276
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 35 GYSHVGLSYETAVDGHH---WRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGT 90
GY V + +G WR + H S+LH++FN+ W L G VE++ LGT
Sbjct: 116 GYESVMVWLAFPAEGQQIEVWRWFSHVLLHFSLLHILFNLMWWWYLGGPVEKV----LGT 171
Query: 91 AYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
L TLV ++SG F +F ++ V Y+ + + W+ ++P
Sbjct: 172 GKLLVITLVSALVSGWAQ--------SWFSGTHFGGLSGVVYALMGYVWLR--GEREPD- 220
Query: 151 KLDLFGFLSLPISFAPFESLIFTS----IIVPQASFLGHLSGIIVGYAIA 196
G+LS+P S F L + I+ + H++G++VG +A
Sbjct: 221 -----GYLSMPRSLMAFALLWLVAGYFDILGMSIANAAHVAGLVVGLLMA 265
>gi|152972298|ref|YP_001337444.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238896887|ref|YP_002921632.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|262045257|ref|ZP_06018283.1| rhomboid protease GlpG [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|329998340|ref|ZP_08303075.1| rhomboid protease GlpG [Klebsiella sp. MS 92-3]
gi|378981101|ref|YP_005229242.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386036926|ref|YP_005956839.1| intramembrane serine protease GlpG [Klebsiella pneumoniae KCTC
2242]
gi|402778618|ref|YP_006634164.1| glpG protein (membrane protein of glp regulon) [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|419973717|ref|ZP_14489140.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419979109|ref|ZP_14494402.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419984556|ref|ZP_14499702.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419990385|ref|ZP_14505357.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419996635|ref|ZP_14511436.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420002555|ref|ZP_14517206.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420008573|ref|ZP_14523062.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420014480|ref|ZP_14528786.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420019849|ref|ZP_14534040.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420025500|ref|ZP_14539508.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420037292|ref|ZP_14550947.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420042873|ref|ZP_14556364.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420048701|ref|ZP_14562013.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420054506|ref|ZP_14567679.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420059148|ref|ZP_14572157.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420065739|ref|ZP_14578543.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420070628|ref|ZP_14583279.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420079009|ref|ZP_14591460.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420082185|ref|ZP_14594485.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421911937|ref|ZP_16341682.1| GlpG protein (membrane protein of glp regulon) [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421914350|ref|ZP_16343999.1| GlpG protein (membrane protein of glp regulon) [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|424832761|ref|ZP_18257489.1| peptidase, S54 (rhomboid) family [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|428152069|ref|ZP_18999764.1| GlpG protein (membrane protein of glp regulon) [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|428933110|ref|ZP_19006671.1| intramembrane serine protease GlpG [Klebsiella pneumoniae JHCK1]
gi|428938828|ref|ZP_19011949.1| intramembrane serine protease GlpG [Klebsiella pneumoniae VA360]
gi|449046864|ref|ZP_21730649.1| intramembrane serine protease GlpG [Klebsiella pneumoniae hvKP1]
gi|172052445|sp|A6TF43.1|GLPG_KLEP7 RecName: Full=Rhomboid protease GlpG; AltName: Full=Intramembrane
serine protease
gi|150957147|gb|ABR79177.1| protein of glp regulon [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238549214|dbj|BAH65565.1| protein of glp regulon [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|259037467|gb|EEW38712.1| rhomboid protease GlpG [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328538736|gb|EGF64823.1| rhomboid protease GlpG [Klebsiella sp. MS 92-3]
gi|339764054|gb|AEK00275.1| intramembrane serine protease GlpG [Klebsiella pneumoniae KCTC
2242]
gi|364520512|gb|AEW63640.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397347607|gb|EJJ40713.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397349929|gb|EJJ43020.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397354217|gb|EJJ47279.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397364682|gb|EJJ57311.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397367124|gb|EJJ59737.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397370973|gb|EJJ63527.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397378016|gb|EJJ70235.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397383166|gb|EJJ75314.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397388640|gb|EJJ80608.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397396949|gb|EJJ88631.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397405584|gb|EJJ97040.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397414664|gb|EJK05860.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397415275|gb|EJK06461.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397422899|gb|EJK13848.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397431009|gb|EJK21692.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397436015|gb|EJK26617.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397441538|gb|EJK31911.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397444127|gb|EJK34414.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397452397|gb|EJK42467.1| intramembrane serine protease GlpG [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|402539577|gb|AFQ63726.1| GlpG protein (membrane protein of glp regulon) [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|410114139|emb|CCM84307.1| GlpG protein (membrane protein of glp regulon) [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410123498|emb|CCM86624.1| GlpG protein (membrane protein of glp regulon) [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|414710205|emb|CCN31909.1| peptidase, S54 (rhomboid) family [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426305000|gb|EKV67131.1| intramembrane serine protease GlpG [Klebsiella pneumoniae VA360]
gi|426305960|gb|EKV68071.1| intramembrane serine protease GlpG [Klebsiella pneumoniae JHCK1]
gi|427537947|emb|CCM95902.1| GlpG protein (membrane protein of glp regulon) [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|448877617|gb|EMB12578.1| intramembrane serine protease GlpG [Klebsiella pneumoniae hvKP1]
Length = 276
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 23/158 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITS 57
P F + P T I+ IC + +I + +G V Y+ ++ WR +
Sbjct: 84 PFFATLRHNAGPFTWAILLICIAV--FILQNLLGDQPVMIWLAWPYDPSLQFEAWRYFSH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
AF H S++H++FN+ W L G VE+ +G G +V+ V+S LL + H
Sbjct: 142 AFMHFSLMHILFNLLWWWYLGGAVEK--RIGSGK------LVVITVISALLSGFVQH--- 190
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
+F +F ++ V Y+ + + W+ + P S + L
Sbjct: 191 -QFSGPWFGGLSGVVYALMGYVWLR--GERDPQSGIYL 225
>gi|433462194|ref|ZP_20419783.1| S54 family peptidase [Halobacillus sp. BAB-2008]
gi|432189083|gb|ELK46216.1| S54 family peptidase [Halobacillus sp. BAB-2008]
Length = 510
Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 40 GLSYETAV-DGHHWRIITSAFSHISVLHLVFNMSALWSLGVV 80
G + A+ +G WR++TS F HI ++HL+ NM AL+ +G
Sbjct: 214 GAKFNPAIMEGEWWRLVTSMFLHIGLIHLMMNMLALYYIGTA 255
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.328 0.143 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,321,517,172
Number of Sequences: 23463169
Number of extensions: 180370657
Number of successful extensions: 696205
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 2266
Number of HSP's that attempted gapping in prelim test: 693882
Number of HSP's gapped (non-prelim): 3133
length of query: 269
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 129
effective length of database: 9,074,351,707
effective search space: 1170591370203
effective search space used: 1170591370203
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 75 (33.5 bits)