BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046439
(269 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8TEB9|RHBL4_HUMAN Rhomboid-related protein 4 OS=Homo sapiens GN=RHBDD1 PE=1 SV=1
Length = 315
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ + YS LS E W R++ S H HL FNM S LW +E+
Sbjct: 39 IWFFLNPQKPLYSSC-LSVEKCYQQKDWQRLLLSPLHHADDWHLYFNMASMLWKGINLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ VL+G++ L + + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYVITAFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ + P SF GHL+GI+VG
Sbjct: 154 NNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHLAGILVG 202
>sp|O74926|RBD2_SCHPO Rhomboid protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rbd2 PE=3 SV=2
Length = 251
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 8/148 (5%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
+ IIT H+S+LH+VFN +L L + Q A L + + G++ L +
Sbjct: 57 YEIITYVTLHLSMLHIVFNFVSL--LPAMSQFEKKQGTLACILVTVIPYTLFPGIMHLIV 114
Query: 112 YHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
YH +++ +Y V+ G S F +++ V P + F S+P P LI
Sbjct: 115 YHFFLRK---DY---VSIAGLSGWAFAFISASCVHSPQRLISFFNLFSIPAYCFPIIYLI 168
Query: 172 FTSIIVPQASFLGHLSGIIVGYAIAWGL 199
T+I+VP+ASF+GH SG ++GY + L
Sbjct: 169 MTTILVPKASFIGHASGAVMGYCTPFML 196
>sp|Q8BHC7|RHBL4_MOUSE Rhomboid-related protein 4 OS=Mus musculus GN=Rhbdd1 PE=1 SV=1
Length = 315
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
+WF++ Y H +S E W R++ S H HL FNM S LW +E+
Sbjct: 39 VWFFLNPWKPLY-HSCISVEKCYQQKDWQRLLLSPLHHGDDWHLYFNMVSMLWKGVKLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ +L+G++ L + + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYVIATFSLLTGVVYLLLQFTVAELLNQPDFKRNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ P SF GHL+GI+VG
Sbjct: 154 SNHYCPGGFVNILGF-PVPNRFACWAELVAIHFCTPGTSFAGHLAGILVG 202
>sp|Q5RBS4|RHBL4_PONAB Rhomboid-related protein 4 OS=Pongo abelii GN=RHBDD1 PE=2 SV=1
Length = 318
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
IWF++ + YS LS E W R++ S H HL FN S LW +E+
Sbjct: 39 IWFFLNPQKPLYSSC-LSVEKCYQQRDWQRLLLSPLHHADDWHLYFNTASVLWKGINLER 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ VL+G++ L + + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYVITTFSVLTGVVYLLLQFAVAEFMDEPDFKRSCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L+ + P SF GH +GI+VG
Sbjct: 154 NNHYCPGGFVNILGF-PVPNRFACWVELVAIHLFSPGTSFAGHQAGILVG 202
>sp|Q4V8F3|RHBL4_RAT Rhomboid-related protein 4 OS=Rattus norvegicus GN=Rhbdd1 PE=2 SV=1
Length = 316
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 8/170 (4%)
Query: 25 IWFYIQKKNIGYSHVGLSYETAVDGHHW-RIITSAFSHISVLHLVFNM-SALWSLGVVEQ 82
+WF++ Y H +S E + W R++ S H HL FNM S LW +E+
Sbjct: 39 VWFFLNPWKPLY-HSCISVEKCYQQNDWQRLLLSPVHHGDDWHLYFNMVSMLWKGVKLEK 97
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTI 142
LG+ ++ +L+G++ L + + F+R AVG+S V+F +
Sbjct: 98 R----LGSRWFAYIIATFSLLTGVVYLLLQFASAELMNQPDFKRNCAVGFSGVLFALKVL 153
Query: 143 LSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVG 192
+ P +++ GF +P FA + L P SF GHL+GI+VG
Sbjct: 154 SNHYCPGGFVNILGF-PVPNRFACWAELAAIHFCTPGTSFAGHLAGILVG 202
>sp|Q6FSG0|RBD2_CANGA Rhomboid protein 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138
/ JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RBD2 PE=3 SV=1
Length = 266
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 18/145 (12%)
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
H+S LHLVFN +L +V L + +++ +T V++ LS ++ IY ++ +
Sbjct: 65 HLSYLHLVFN-----ALAIVGPLNN--FESSHGTIHTGVVLNLSAVIAGIIYCVVSRLLS 117
Query: 121 LEYFRRVTAVGYSCVVFGWMTILSVKQPS--SKLDLFGFL-----SLPISFAPFESLIFT 173
LE G S VF ++T L VK+ +L+L F+ S+P F P L+FT
Sbjct: 118 LE----TGVAGASGWVFTFITYLCVKESQLYPRLELSRFIPGVTQSIPTQFTPVVFLLFT 173
Query: 174 SIIVPQASFLGHLSGIIVGYAIAWG 198
+I+ Q+SFLGH +G+IVGY + +G
Sbjct: 174 AIVFFQSSFLGHTAGMIVGYIMGYG 198
>sp|Q8RXW0|Y3761_ARATH Uncharacterized protein At3g17611 OS=Arabidopsis thaliana
GN=At3g17611 PE=2 SV=1
Length = 334
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 53 RIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIY 112
R+ SAF H++ HLV+NM +L G+ + +G++ + L+ +S + L +
Sbjct: 78 RLFLSAFYHVNEPHLVYNMMSLLWKGIKLE---TSMGSSEFASMVFTLIGMSQGVTLLLA 134
Query: 113 HLLIQRFKLEY-FRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLI 171
L+ F + + AVG+S V+F +L+ Q ++G L +P +A + LI
Sbjct: 135 KSLLLLFDYDRAYYNEYAVGFSGVLFAMKVVLN-SQAEDYSSVYGIL-VPTKYAAWAELI 192
Query: 172 FTSIIVPQASFLGHLSGIIVG 192
+ VP ASFLGHL GI+ G
Sbjct: 193 LVQMFVPNASFLGHLGGILAG 213
>sp|Q8LB17|Y3846_ARATH Uncharacterized protein At3g58460 OS=Arabidopsis thaliana
GN=At3g58460 PE=1 SV=2
Length = 403
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 109/251 (43%), Gaps = 47/251 (18%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGI 111
+R T+ H S+LH++FNM AL +G +L + +G+ L T++L + +L
Sbjct: 65 YRFYTAIIFHGSLLHVLFNMMALVPMG--SELERI-MGSVRLLYLTVLLATTNAVL---- 117
Query: 112 YHLLIQR-------FKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF 164
HLLI ++ ++ A+G+S ++F + I + + +FG ++P
Sbjct: 118 -HLLIASLAGYNPFYQYDHLMNECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKL 176
Query: 165 APFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH----GMNNYWALSMLGWI----- 215
P+ LI +++ S LGHL GI+ G++ ++GL + G + + + W+
Sbjct: 177 YPWILLIVFQLLMTNVSLLGHLCGILSGFSYSYGLFNFLMPGSSFFTTIESASWMSSFIR 236
Query: 216 -------------VLVFVYSLKRSGTYDF----------NFLEIESVTDPSLPSVRFIGN 252
+ YS + + + F ++L ++ S RF G
Sbjct: 237 RPKFIMCTGGNPSSYIPTYSAQNTTSSGFSTGNAWRSLSSWLPQREASNQSSEDSRFPGR 296
Query: 253 GRTLQMSAIPV 263
GRTL + P
Sbjct: 297 GRTLSTARDPT 307
>sp|Q12270|RBD2_YEAST Rhomboid protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=RBD2 PE=1 SV=1
Length = 262
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 20/168 (11%)
Query: 61 HISVLHLVFNMSALWS-LGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
H+S+ HL+FN+ A+W+ L + E+ GT Y T V + LS L GI + L+ +
Sbjct: 63 HLSLPHLLFNVLAIWAPLNLFEETH----GTVY----TGVFLNLSALFA-GILYCLLGKL 113
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVK-QPSSKLDLFGFLSLPISFAPFESLIFTSIIVP 178
A G+ +F + + + +P +++ + S+P + P L+ ++++P
Sbjct: 114 LYPEALVAGASGWCFTLFAYYSFKESQIRPRTRIFRTDY-SIPTLYTPLVLLVAIAVVIP 172
Query: 179 QASFLGHLSGIIVGYAIAWGLIHGMNNYW--ALSMLGWIVLVFVYSLK 224
+SF GH G+ VGYAI G W ++ GWI+ SL
Sbjct: 173 GSSFWGHFFGLCVGYAI------GYKESWFNKITPPGWIITKIEKSLD 214
>sp|Q6BSA9|RBD2_DEBHA Rhomboid protein 2 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RBD2 PE=3
SV=2
Length = 286
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 19/148 (12%)
Query: 61 HISVLHLVFNMSALWS-LGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRF 119
H H + N+ L+S L + E+ GT + VL V +GL + LL
Sbjct: 72 HRGFTHWLLNVVGLFSPLAIFERTN----GTVFTGVTLNVLAVTAGLQFCIVGKLL---- 123
Query: 120 KLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGF------LSLPISFAPFESLIFT 173
+ +G S VVF +M+ ++ K+ + ++ F +S+P ++PF LI
Sbjct: 124 ----YPNTQVIGLSGVVFSFMSFMAYKEHHTTPVIYTFKYQGSEVSIPTLYSPFIFLIVC 179
Query: 174 SIIVPQASFLGHLSGIIVGYAIAWGLIH 201
+++P +SF GHL+GI GY +A G I
Sbjct: 180 MVLIPGSSFWGHLAGISSGYLLALGYIK 207
>sp|Q4WLP9|RBD2_ASPFU Rhomboid protein 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rbd2 PE=3 SV=1
Length = 272
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 21/179 (11%)
Query: 23 SVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQ 82
IW +Q ++ + +G+ G +R+ T F H+ H N+ AL L +E+
Sbjct: 44 QTIWSVVQWGSLTPNEIGI-------GSMYRLNTYPFIHVGFFHAFVNLLALTPL--LER 94
Query: 83 LGDVGLGTAYYLQYTLVLVVLSGLLVL--GIYHLLIQRFKLEYFRRVTAVGYSCVVFGWM 140
A + T V + + L GIY +L+++F L VG S +F +
Sbjct: 95 F------EAEHGTLTAVALFIGPLSTFPAGIY-ILVEKFILR--SNTAVVGASVWIFLLL 145
Query: 141 TILSVKQ-PSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
++K S+ G +P +P + SI VP SFLGHLS II+GY + G
Sbjct: 146 GSEAIKTFKSNPYFSLGTTKIPTWTSPLFACALVSIFVPNTSFLGHLSAIIIGYLLGLG 204
>sp|A4WFK8|GLPG_ENT38 Rhomboid protease GlpG OS=Enterobacter sp. (strain 638) GN=glpG
PE=3 SV=1
Length = 276
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 21/153 (13%)
Query: 4 PLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLS----YETAVDGHHWRIITSAF 59
P F + E+ ++ + + I +I +G V ++ Y AV WR T A
Sbjct: 84 PFFATVRERAGPFTLLLMAACILVFIIMNVVGDQRVMIALAWPYGPAVQYDVWRYFTHAL 143
Query: 60 SHISVLHLVFNMSALWSLG--VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQ 117
H SVLH++FN+ W LG V ++LG L +V+ ++S LL + H
Sbjct: 144 MHFSVLHILFNLLWWWYLGGAVEKRLGSGKL---------IVITIISALLSGYVQH---- 190
Query: 118 RFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
+F +F ++ V Y+ + + W+ + P S
Sbjct: 191 KFSGPWFGGLSGVVYALMGYAWLR--GERDPES 221
>sp|Q3YWA4|GLPG_SHISS Rhomboid protease GlpG OS=Shigella sonnei (strain Ss046) GN=glpG
PE=3 SV=1
Length = 276
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ A+ WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPALKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|Q32AN6|GLPG_SHIDS Rhomboid protease GlpG OS=Shigella dysenteriae serotype 1 (strain
Sd197) GN=glpG PE=3 SV=1
Length = 276
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ A+ WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPALKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|B5YTX6|GLPG_ECO5E Rhomboid protease GlpG OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=glpG PE=3 SV=1
Length = 276
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ A+ WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPALKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|Q8X6Z6|GLPG_ECO57 Rhomboid protease GlpG OS=Escherichia coli O157:H7 GN=glpG PE=3
SV=1
Length = 276
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ A+ WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPALKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|Q83PV6|GLPG_SHIFL Rhomboid protease GlpG OS=Shigella flexneri GN=glpG PE=3 SV=5
Length = 276
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYMQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|Q31VK9|GLPG_SHIBS Rhomboid protease GlpG OS=Shigella boydii serotype 4 (strain Sb227)
GN=glpG PE=3 SV=1
Length = 276
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|B2U3N2|GLPG_SHIB3 Rhomboid protease GlpG OS=Shigella boydii serotype 18 (strain CDC
3083-94 / BS512) GN=glpG PE=3 SV=1
Length = 276
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|B6I2Y7|GLPG_ECOSE Rhomboid protease GlpG OS=Escherichia coli (strain SE11) GN=glpG
PE=3 SV=1
Length = 276
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|B7M2I4|GLPG_ECO8A Rhomboid protease GlpG OS=Escherichia coli O8 (strain IAI1) GN=glpG
PE=3 SV=1
Length = 276
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|B7L4V0|GLPG_ECO55 Rhomboid protease GlpG OS=Escherichia coli (strain 55989 / EAEC)
GN=glpG PE=3 SV=1
Length = 276
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|A7ZSV4|GLPG_ECO24 Rhomboid protease GlpG OS=Escherichia coli O139:H28 (strain E24377A
/ ETEC) GN=glpG PE=3 SV=1
Length = 276
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVVMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|B7N156|GLPG_ECO81 Rhomboid protease GlpG OS=Escherichia coli O81 (strain ED1a)
GN=glpG PE=3 SV=1
Length = 276
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|Q1R5L1|GLPG_ECOUT Rhomboid protease GlpG OS=Escherichia coli (strain UTI89 / UPEC)
GN=glpG PE=3 SV=1
Length = 276
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|B1LI84|GLPG_ECOSM Rhomboid protease GlpG OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=glpG PE=3 SV=1
Length = 276
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|B7NE28|GLPG_ECOLU Rhomboid protease GlpG OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=glpG PE=3 SV=1
Length = 276
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|P09391|GLPG_ECOLI Rhomboid protease GlpG OS=Escherichia coli (strain K12) GN=glpG
PE=1 SV=5
Length = 276
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|B1IP42|GLPG_ECOLC Rhomboid protease GlpG OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=glpG PE=3 SV=1
Length = 276
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|Q8FCS5|GLPG_ECOL6 Rhomboid protease GlpG OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=glpG PE=3 SV=1
Length = 276
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|Q0TC44|GLPG_ECOL5 Rhomboid protease GlpG OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=glpG PE=3 SV=1
Length = 276
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|A1AGU7|GLPG_ECOK1 Rhomboid protease GlpG OS=Escherichia coli O1:K1 / APEC GN=glpG
PE=3 SV=1
Length = 276
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|A8A5N2|GLPG_ECOHS Rhomboid protease GlpG OS=Escherichia coli O9:H4 (strain HS)
GN=glpG PE=3 SV=1
Length = 276
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|B1X769|GLPG_ECODH Rhomboid protease GlpG OS=Escherichia coli (strain K12 / DH10B)
GN=glpG PE=3 SV=1
Length = 276
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|C4ZVX5|GLPG_ECOBW Rhomboid protease GlpG OS=Escherichia coli (strain K12 / MC4100 /
BW2952) GN=glpG PE=3 SV=1
Length = 276
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|B7MDQ0|GLPG_ECO45 Rhomboid protease GlpG OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=glpG PE=3 SV=1
Length = 276
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|B7UKC8|GLPG_ECO27 Rhomboid protease GlpG OS=Escherichia coli O127:H6 (strain E2348/69
/ EPEC) GN=glpG PE=3 SV=1
Length = 276
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|B7LSC6|GLPG_ESCF3 Rhomboid protease GlpG OS=Escherichia fergusonii (strain ATCC 35469
/ DSM 13698 / CDC 0568-73) GN=glpG PE=3 SV=1
Length = 276
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|Q0SZP2|GLPG_SHIF8 Rhomboid protease GlpG OS=Shigella flexneri serotype 5b (strain
8401) GN=glpG PE=3 SV=2
Length = 276
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|B7NMI8|GLPG_ECO7I Rhomboid protease GlpG OS=Escherichia coli O7:K1 (strain IAI39 /
ExPEC) GN=glpG PE=3 SV=1
Length = 276
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHVGL----SYETAVDGHHWRIITS 57
P F + E+ P T ++ C V+ +I + +G V L ++ + WR T
Sbjct: 84 PFFAALRERAGPVTWVMMIACVVV--FIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
A H S++H++FN+ W L G VE+ LG+ + TL+ +LSG +
Sbjct: 142 ALMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITLISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS 150
Q+F +F ++ V Y+ + + W+ + P S
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQS 221
>sp|Q6CDV6|RBD2_YARLI Rhomboid protein 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=RBD2 PE=3 SV=1
Length = 297
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 17/142 (11%)
Query: 61 HISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFK 120
H + HL+ N+ AL +V Q V GT ++ +VL +L+ +V I L+
Sbjct: 67 HATWFHLLLNLVALQP--IVSQFERVN-GT---VRTGIVLNILA--VVTAIPWCLL---S 115
Query: 121 LEYFRRVTAVGYSCVVFG----WMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSII 176
+ +F +G S +F W S KQP+++L L +P P L+ +I+
Sbjct: 116 IGFFPDEAVLGSSAWIFSFMGYWAIRESSKQPTTQLA--PNLVVPTWLLPIIYLVVIAIV 173
Query: 177 VPQASFLGHLSGIIVGYAIAWG 198
+P +SF+GHL G+I G+ +A G
Sbjct: 174 IPSSSFIGHLLGLIAGWMMALG 195
>sp|A9MMA7|GLPG_SALAR Rhomboid protease GlpG OS=Salmonella arizonae (strain ATCC BAA-731
/ CDC346-86 / RSK2980) GN=glpG PE=3 SV=1
Length = 276
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 91/201 (45%), Gaps = 27/201 (13%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITS 57
P + E+ P T ++ C ++ YI +G V ++ A+ WR T
Sbjct: 84 PFLATLRERAGPVTWTVMVACVLV--YIAMNLVGDQTVMVWLAWPFDPALKFEFWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
F H S++H++FN+ W L G VE+ LG+ + T++ +LSG +
Sbjct: 142 IFMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITVISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL-FGFLSLPISFAPFESLIFTSI 175
Q+F +F ++ V Y+ + + W+ + P S + L G + + + L + +
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQSGIYLQRGLIIFALLWIVAGWLDWFGM 247
Query: 176 IVPQASFLGHLSGIIVGYAIA 196
+ + H++G+IVG A+A
Sbjct: 248 SMANGA---HIAGLIVGLAMA 265
>sp|Q874X5|RBD2_PODAS Rhomboid protein 2 OS=Podospora anserina GN=RBD2 PE=3 SV=1
Length = 289
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQ-YTLVLVVLSGLLVLG 110
+R+ T F H+++ H V N+ AL L +E+ + GT L + L + L +G
Sbjct: 62 YRMNTFPFIHLNIFHAVMNILALTPL--MERF-EAEYGTLNCLALFFGPLTTIPAFLYIG 118
Query: 111 IYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLD-LFGFLSLPISFAPFES 169
+ K + V +G S VF + + +VK + + G S+P P
Sbjct: 119 LE-------KFVFGNNVAVMGASMWVFLLLGVEAVKTYKVNPNFVIGTYSIPTWTTPIGV 171
Query: 170 LIFTSIIVPQASFLGHLSGIIVGYA 194
L +++VP +SF GH +G+++GY
Sbjct: 172 LFAMAVLVPSSSFWGHAAGLVIGYG 196
>sp|A8AQX4|GLPG_CITK8 Rhomboid protease GlpG OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=glpG PE=3 SV=1
Length = 276
Score = 38.1 bits (87), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 25/159 (15%)
Query: 43 YETAVDGHHWRIITSAFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLV 101
++ ++ WR T AF H S++H++FN+ W + G VE+ LG+ + T++
Sbjct: 127 FDPSLKFEFWRYFTHAFMHFSLMHILFNLLWWWYIGGAVEKR----LGSGKLIVITVISA 182
Query: 102 VLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS----KLDLFGF 157
+LSG + Q+F +F ++ V Y+ + + W+ + P S + L F
Sbjct: 183 LLSGYVQ--------QKFSGPWFGGLSGVVYALMGYAWLR--GERDPQSGIYLQRGLIAF 232
Query: 158 LSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIA 196
+ I F+ +F + A H++G+ VG A+A
Sbjct: 233 ALIWIVAGWFD--VFGMSMANGA----HIAGLAVGLAMA 265
>sp|B5BHH5|GLPG_SALPK Rhomboid protease GlpG OS=Salmonella paratyphi A (strain AKU_12601)
GN=glpG PE=3 SV=1
Length = 276
Score = 38.1 bits (87), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 37/206 (17%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITS 57
P + E+ P T ++ C V+ YI IG V ++ + WR T
Sbjct: 84 PFLATLRERAGPVTWIVMLACVVV--YIAMSLIGDQTVMVWLAWPFDPVLKFEVWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
F H S++H++FN+ W L G VE+ LG+ + T++ +LSG +
Sbjct: 142 IFMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITVISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL------FGFLSLPISFAPFESL 170
Q+F +F ++ V Y+ + + W+ + P S + L F L + S+ + +
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQSGIYLQRGLIIFALLWIVASWFDWFGM 247
Query: 171 IFTSIIVPQASFLGHLSGIIVGYAIA 196
+ H++G+IVG A+A
Sbjct: 248 SMAN--------GAHIAGLIVGLAMA 265
>sp|Q5PLZ8|GLPG_SALPA Rhomboid protease GlpG OS=Salmonella paratyphi A (strain ATCC 9150
/ SARB42) GN=glpG PE=3 SV=1
Length = 276
Score = 38.1 bits (87), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 37/206 (17%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITS 57
P + E+ P T ++ C V+ YI IG V ++ + WR T
Sbjct: 84 PFLATLRERAGPVTWIVMLACVVV--YIAMSLIGDQTVMVWLAWPFDPVLKFEVWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
F H S++H++FN+ W L G VE+ LG+ + T++ +LSG +
Sbjct: 142 IFMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITVISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL------FGFLSLPISFAPFESL 170
Q+F +F ++ V Y+ + + W+ + P S + L F L + S+ + +
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQSGIYLQRGLIIFALLWIVASWFDWFGM 247
Query: 171 IFTSIIVPQASFLGHLSGIIVGYAIA 196
+ H++G+IVG A+A
Sbjct: 248 SMAN--------GAHIAGLIVGLAMA 265
>sp|Q7S4V5|RBD2_NEUCR Rhomboid protein 2 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rbd-2
PE=3 SV=1
Length = 276
Score = 38.1 bits (87), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 52 WRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDVGLGTAYYLQYTLVLVVL---SGLLV 108
+RI T F H+++ H + N+ A L L + TL V L +
Sbjct: 72 YRINTFPFIHLNIFHTILNIVAFTPL----------LERFEHEHGTLTSVALFFGPFATI 121
Query: 109 LGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQ-PSSKLDLFGFLSLPISFAPF 167
G+ ++ ++RF L +G S VF + + +++ ++ ++P P
Sbjct: 122 PGLIYVFVERFILH--ANTPVMGASMWVFLLLGMEAIRTYKTNPYFTISTYNIPTWITPL 179
Query: 168 ESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198
++ T+ ++P +SFLGHL+G++VGY G
Sbjct: 180 LLVVVTAALLPSSSFLGHLAGLLVGYGFGLG 210
>sp|B5XTR5|GLPG_KLEP3 Rhomboid protease GlpG OS=Klebsiella pneumoniae (strain 342)
GN=glpG PE=3 SV=1
Length = 276
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 23/158 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITS 57
P F + P T I+ IC + +I + +G V Y+ ++ WR +
Sbjct: 84 PFFATLRHNAGPFTWAILLICIAV--FILQNLLGDQPVMIWLAWPYDPSLQFEAWRYFSH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
AF H S++H++FN+ W L G VE+ +G G +V+ V+S LL + H
Sbjct: 142 AFMHFSLMHILFNLLWWWYLGGAVEK--RIGSGK------LVVITVISALLSGFVQH--- 190
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
+F +F ++ V Y+ + + W+ + P S + L
Sbjct: 191 -QFSGPWFGGLSGVVYALMGYVWLR--GERDPQSGIYL 225
>sp|A6TF43|GLPG_KLEP7 Rhomboid protease GlpG OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=glpG PE=3 SV=1
Length = 276
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 23/158 (14%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITS 57
P F + P T I+ IC + +I + +G V Y+ ++ WR +
Sbjct: 84 PFFATLRHNAGPFTWAILLICIAV--FILQNLLGDQPVMIWLAWPYDPSLQFEAWRYFSH 141
Query: 58 AFSHISVLHLVFNMSALWSL-GVVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
AF H S++H++FN+ W L G VE+ +G G +V+ V+S LL + H
Sbjct: 142 AFMHFSLMHILFNLLWWWYLGGAVEK--RIGSGK------LVVITVISALLSGFVQH--- 190
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDL 154
+F +F ++ V Y+ + + W+ + P S + L
Sbjct: 191 -QFSGPWFGGLSGVVYALMGYVWLR--GERDPQSGIYL 225
>sp|Q8Z229|GLPG_SALTI Rhomboid protease GlpG OS=Salmonella typhi GN=glpG PE=3 SV=1
Length = 276
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 33/204 (16%)
Query: 4 PLFYEIMEK--PATSCIIGICSVIWFYIQKKNIGYSHV----GLSYETAVDGHHWRIITS 57
P + E+ P T ++ C V+ YI IG V ++ + WR T
Sbjct: 84 PFLATLRERAGPVTWIVMLACVVV--YIAMSLIGDQTVMVWLAWPFDPVLKFEVWRYFTH 141
Query: 58 AFSHISVLHLVFNMSALWSLG-VVEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLI 116
F H S++H++FN+ W LG VE+ LG+ + T++ +LSG +
Sbjct: 142 IFMHFSLMHILFNLLWWWYLGGAVEKR----LGSGKLIVITVISALLSGYVQ-------- 189
Query: 117 QRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSS----KLDLFGFLSLPISFAPFESLIF 172
Q+F +F ++ V Y+ + + W+ + P S + L F L I F+ F
Sbjct: 190 QKFSGPWFGGLSGVVYALMGYVWLR--GERDPQSGIYLQRGLIIFALLWIVAGWFD--WF 245
Query: 173 TSIIVPQASFLGHLSGIIVGYAIA 196
+ A H++G+IVG A+A
Sbjct: 246 GMSMANGA----HIAGLIVGLAMA 265
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.143 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,390,579
Number of Sequences: 539616
Number of extensions: 4035972
Number of successful extensions: 11211
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 11095
Number of HSP's gapped (non-prelim): 122
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)