Query 046439
Match_columns 269
No_of_seqs 273 out of 1496
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 12:07:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2632 Rhomboid family protei 100.0 1.4E-27 3.1E-32 206.0 18.3 245 1-253 4-253 (258)
2 PRK10907 intramembrane serine 99.9 7.3E-27 1.6E-31 207.7 17.9 178 4-202 84-271 (276)
3 PTZ00101 rhomboid-1 protease; 99.9 1.7E-25 3.8E-30 198.6 17.8 174 12-204 53-243 (278)
4 COG0705 Membrane associated se 99.9 9E-23 2E-27 177.6 17.4 180 11-204 16-214 (228)
5 PF01694 Rhomboid: Rhomboid fa 99.9 1.3E-21 2.8E-26 158.0 8.2 139 47-203 2-144 (145)
6 KOG2289 Rhomboid family protei 99.8 5.7E-20 1.2E-24 164.8 3.3 138 44-202 112-255 (316)
7 KOG0858 Predicted membrane pro 99.6 4.8E-15 1E-19 126.8 14.2 173 8-198 8-184 (239)
8 PF04511 DER1: Der1-like famil 99.6 1.7E-14 3.7E-19 123.0 14.6 175 12-198 2-179 (197)
9 KOG2290 Rhomboid family protei 99.4 4.1E-13 8.9E-18 123.5 6.2 140 49-205 449-589 (652)
10 COG5291 Predicted membrane pro 99.2 7E-11 1.5E-15 101.2 7.2 164 11-192 19-187 (313)
11 KOG2980 Integral membrane prot 99.1 6.3E-11 1.4E-15 104.7 3.0 177 14-203 117-303 (310)
12 PF08551 DUF1751: Eukaryotic i 98.7 4.1E-08 9E-13 74.5 6.2 90 49-142 6-96 (99)
13 KOG4463 Uncharacterized conser 98.3 1.4E-06 3E-11 75.8 6.7 123 9-141 8-132 (323)
14 KOG2890 Predicted membrane pro 98.1 5.7E-05 1.2E-09 67.2 11.7 149 49-201 65-215 (326)
15 TIGR02854 spore_II_GA sigma-E 52.0 22 0.00048 32.0 4.3 36 65-108 11-47 (288)
16 KOG4112 Signal peptidase subun 38.6 1.4E+02 0.003 22.4 5.9 16 225-240 75-90 (101)
17 PF03419 Peptidase_U4: Sporula 33.9 1.1E+02 0.0024 27.5 5.9 36 65-108 11-47 (293)
18 PHA02966 hypothetical protein; 28.1 21 0.00046 23.8 0.2 17 240-256 26-42 (67)
19 COG4769 Predicted membrane pro 24.2 4.2E+02 0.0092 22.1 10.1 31 128-158 80-111 (181)
No 1
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=205.96 Aligned_cols=245 Identities=34% Similarity=0.554 Sum_probs=189.3
Q ss_pred CCccchhhccCccHHHHHHHHHHHHHHHHhhccccccccccchhhhccccchHHhHhHhhcCChhHHHHHHHHHHHHhH-
Q 046439 1 MGRPLFYEIMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV- 79 (269)
Q Consensus 1 ~g~~~~~~~~~~pvt~~li~i~v~vfll~~~~~~~~~~~~l~~~~~~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~- 79 (269)
+|++.....+.+.+|..+..++.++|++....... +.+.+++....+.|.||++||+++|.+..|+++||+.+|..|.
T Consensus 4 ~g~~~~~~~~~p~~ts~~~~~~~~i~lv~~~~~i~-~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~ 82 (258)
T KOG2632|consen 4 GGRVGQFWMKIPLLTSIVVVLAILIYLVSFFPGIV-EVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQ 82 (258)
T ss_pred cccCccccccchHHHHHHHHHHHHHHHHhccchhh-hHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhH
Confidence 46666666667779999999999999987776544 5667777777789999999999999999999999999999996
Q ss_pred hhhhccCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHhcCCCceeeeecc
Q 046439 80 VEQLGDVGLG-TAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFL 158 (269)
Q Consensus 80 lE~~~~~~~G-~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~~ 158 (269)
+|+. .| +.+++.+..+.++++|++..++++.... .+.+.+..++|.||..||+++......|.++..+++..
T Consensus 83 fE~~----~G~t~~~l~~~~llalf~gIl~ll~~~~~~~---~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~ 155 (258)
T KOG2632|consen 83 FERT----HGTTVRILMFTVLLALFSGILYLLAYHVFLL---SDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLF 155 (258)
T ss_pred HHhh----ccceehHHHHHHHHHHHHHHHHHHHHHHHhh---cchhhhcccccccHHHHHHHHHHhhcCcccchhhcccc
Confidence 9998 67 8899988899999999999888863321 22334667899999999999999999999998899998
Q ss_pred chhhHHHHHHHHHHHHhhcCchhHHHhHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHhHhhccCCCccccccc
Q 046439 159 SLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIH---GMNNYWALSMLGWIVLVFVYSLKRSGTYDFNFLE 235 (269)
Q Consensus 159 ~i~~~~~~~~~l~~~~~~~~~~s~~aHl~G~l~G~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (269)
.+|.++.||+.++.+++..|+.|+.+|+||+++|++|++...+ ..++.+...-..+....+.....+-.....+-++
T Consensus 156 siP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~~f~lip~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v 235 (258)
T KOG2632|consen 156 SIPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFSSFGLIPGIRNYRAVTEAAWSLLRLAPWIQDLGSNSGRGIV 235 (258)
T ss_pred cccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhhccCCcchhHHHhhhhhhhhhhcCCcHHHhccccCCcee
Confidence 9999999999999999999999999999999999999995332 2223222221111111111111111111135567
Q ss_pred cccCCCCCcccccccccC
Q 046439 236 IESVTDPSLPSVRFIGNG 253 (269)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~ 253 (269)
+++.+++..+.+...+|+
T Consensus 236 ~~~~~~~~~P~~~~~~~~ 253 (258)
T KOG2632|consen 236 FPGLTGSPFPGPLHCQSG 253 (258)
T ss_pred ccCcCCCCCCCccccCCc
Confidence 778888888888887776
No 2
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.95 E-value=7.3e-27 Score=207.66 Aligned_cols=178 Identities=24% Similarity=0.354 Sum_probs=127.8
Q ss_pred cchhhcc--CccHHHHHHHHHHHHHHHHhhcccc--ccccccchhhhccccchHHhHhHhhcCChhHHHHHHHHHHHHhH
Q 046439 4 PLFYEIM--EKPATSCIIGICSVIWFYIQKKNIG--YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV 79 (269)
Q Consensus 4 ~~~~~~~--~~pvt~~li~i~v~vfll~~~~~~~--~~~~~l~~~~~~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~ 79 (269)
++.++.+ ..|+|..++++|+++|++....... ...+.++.+....+|+||++|++|+|.|+.|+++||+++|.+|+
T Consensus 84 ~~~~~~~~~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~ 163 (276)
T PRK10907 84 PFLATLRERAGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGG 163 (276)
T ss_pred hHHHhhccCCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3444555 5789999999999999987665421 12233333334459999999999999999999999999999997
Q ss_pred -hhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHhc---CCCceeee
Q 046439 80 -VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQ---PSSKLDLF 155 (269)
Q Consensus 80 -lE~~~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~~---p~~~~~l~ 155 (269)
+|+. +|+++++.+|+++++++++.+... . .....|+||++||++++..... |+....
T Consensus 164 ~iE~~----~G~~~~l~l~l~s~i~~~~~~~~~--------~-----~~~~gGaSGvVygL~g~~~~~~~~~p~~~~~-- 224 (276)
T PRK10907 164 AVEKR----LGSGKLIVITLISALLSGWVQSKF--------S-----GPWFGGLSGVVYALMGYVWLRGERDPQSGIY-- 224 (276)
T ss_pred HHHHH----HChHHHHHHHHHHHHHHHHHHHHH--------c-----cchhhHHHHHHHHHHHHHHHHhccccccchh--
Confidence 9999 899999999999999998875431 1 2246799999999999754432 322221
Q ss_pred eccchhhH--HHHHHHHHHHHhhcCchhHHHhHHHHHHHHHHHHHHhhc
Q 046439 156 GFLSLPIS--FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHG 202 (269)
Q Consensus 156 ~~~~i~~~--~~~~~~l~~~~~~~~~~s~~aHl~G~l~G~l~~~~~~~~ 202 (269)
.+-+.. .+.|+.+.+..+..+++++.||++|+++|+++++...+.
T Consensus 225 --lp~~~~~f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~~ 271 (276)
T PRK10907 225 --LPRGLIAFALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTRN 271 (276)
T ss_pred --hhHHHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhhhh
Confidence 111111 122222233445567899999999999999998765443
No 3
>PTZ00101 rhomboid-1 protease; Provisional
Probab=99.94 E-value=1.7e-25 Score=198.58 Aligned_cols=174 Identities=16% Similarity=0.235 Sum_probs=122.8
Q ss_pred ccHHHHHHHHHHHHHHHHhhccc------c---cccccc-chhhhccccchHHhHhHhhcCChhHHHHHHHHHHHHhH-h
Q 046439 12 KPATSCIIGICSVIWFYIQKKNI------G---YSHVGL-SYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-V 80 (269)
Q Consensus 12 ~pvt~~li~i~v~vfll~~~~~~------~---~~~~~l-~~~~~~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-l 80 (269)
+++|..++++++++|++...... . ...++. .++.+.++|+||++|++|+|.|+.|+++||+.++.+|. +
T Consensus 53 ~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~l 132 (278)
T PTZ00101 53 KSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTL 132 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 56899999999999987655221 0 122333 44555569999999999999999999999999999997 9
Q ss_pred hhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHh---c---CCCceee
Q 046439 81 EQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVK---Q---PSSKLDL 154 (269)
Q Consensus 81 E~~~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~---~---p~~~~~l 154 (269)
|+. +|++|+..+|+.+++.+++++.... +...++||||++||++++.... . .+.+...
T Consensus 133 E~~----~G~~r~~ilYl~sGi~G~l~s~~~~------------~~~~svGASgAifGLiGa~~~~lil~w~~~~~~~~~ 196 (278)
T PTZ00101 133 EKN----YGIVKIIILYFLTGIYGNILSSSVT------------YCPIKVGASTSGMGLLGIVTSELILLWHVIRHRERV 196 (278)
T ss_pred HHH----HChHHHHHHHHHHHHHHHHHHHHHc------------cCCcEEehhHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 999 7999999999999999988765321 2346899999999999986421 1 1111110
Q ss_pred eeccchhhHHHHHHHHHHHHhhcCchhHHHhHHHHHHHHHHHHHHhhccc
Q 046439 155 FGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMN 204 (269)
Q Consensus 155 ~~~~~i~~~~~~~~~l~~~~~~~~~~s~~aHl~G~l~G~l~~~~~~~~~~ 204 (269)
+..+.. ...+..+.......+++|+.||+||+++|++++..+.+..+
T Consensus 197 --~~~~i~-~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~~l~ 243 (278)
T PTZ00101 197 --VFNIIF-FSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQME 243 (278)
T ss_pred --HHHHHH-HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 000000 00000111111234789999999999999999998877543
No 4
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.90 E-value=9e-23 Score=177.55 Aligned_cols=180 Identities=26% Similarity=0.395 Sum_probs=133.3
Q ss_pred CccHHHHHHHHHHHHHHHHhhccccc--------cccccchhhhcc--c--cchHHhHhHhhcCChhHHHHHHHHHHHHh
Q 046439 11 EKPATSCIIGICSVIWFYIQKKNIGY--------SHVGLSYETAVD--G--HHWRIITSAFSHISVLHLVFNMSALWSLG 78 (269)
Q Consensus 11 ~~pvt~~li~i~v~vfll~~~~~~~~--------~~~~l~~~~~~~--~--q~wrllT~~F~H~~~~Hll~Nm~~L~~~G 78 (269)
.+++|..++.+|+++++......... ......+..... . |+||++|++|+|.|+.|+++||+.+|.+|
T Consensus 16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg 95 (228)
T COG0705 16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG 95 (228)
T ss_pred cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 37799999999999999876654321 112333333322 2 89999999999999999999999999999
Q ss_pred H-hhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHhcCCCceeeeec
Q 046439 79 V-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGF 157 (269)
Q Consensus 79 ~-lE~~~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~ 157 (269)
. +|+. +|+.+|+.+|+.+++++++.+... .+. ...+.+||||+++|+++++....|..+......
T Consensus 96 ~~le~~----~G~~~f~~~yl~~gl~~~~~~~~~--------~~~--~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~ 161 (228)
T COG0705 96 SNLERR----LGTLRFLLFYLLSGLLAGLAQVLF--------GPK--GGAPSLGASGAIFGLLGAYFLLFPFARILLLFL 161 (228)
T ss_pred HHHHHH----hchhHHHHHHHHHHHHHHHHHHHH--------ccc--ccCcccchhHHHHHHHHHHHHHccccchhhhhc
Confidence 6 9999 899999999999999998874321 111 124789999999999999999999987766543
Q ss_pred -cchhhHHHHHHHHHHHH---hhc--CchhHHHhHHHHHHHHHHHHHHhhccc
Q 046439 158 -LSLPISFAPFESLIFTS---IIV--PQASFLGHLSGIIVGYAIAWGLIHGMN 204 (269)
Q Consensus 158 -~~i~~~~~~~~~l~~~~---~~~--~~~s~~aHl~G~l~G~l~~~~~~~~~~ 204 (269)
.+.+......+.++... ... +++++.+|++|++.|.+++..+.+..+
T Consensus 162 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~~ 214 (228)
T COG0705 162 SLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKLR 214 (228)
T ss_pred cCchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34444332222222221 112 258899999999999999998877654
No 5
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=99.85 E-value=1.3e-21 Score=157.96 Aligned_cols=139 Identities=34% Similarity=0.539 Sum_probs=98.9
Q ss_pred ccccchHHhHhHhhcCChhHHHHHHHHHHHHhH-hhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 046439 47 VDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFR 125 (269)
Q Consensus 47 ~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-lE~~~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~ 125 (269)
.++|+||++|++|+|.|+.|+++|++.++.+|. +|+. .|++++..+|+.+++.+++...+.. . .
T Consensus 2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~----~G~~~~~~~~l~~~~~~~l~~~~~~----~-------~ 66 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERR----LGSRRFLALYLLSGLLGSLLSLLFS----P-------P 66 (145)
T ss_dssp GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH------------S
T ss_pred CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhh----ccchHHHHHHHHHHHhhhhcccccc----c-------c
Confidence 358999999999999999999999999999997 9999 7999999999999998887765432 1 1
Q ss_pred ccccchhHHHHHHHHHHHHHhcCCCceeeee---ccchhhHHHHHHHHHHHHhhcCchhHHHhHHHHHHHHHHHHHHhhc
Q 046439 126 RVTAVGYSCVVFGWMTILSVKQPSSKLDLFG---FLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHG 202 (269)
Q Consensus 126 ~~~~vGaSg~v~gl~~~~~~~~p~~~~~l~~---~~~i~~~~~~~~~l~~~~~~~~~~s~~aHl~G~l~G~l~~~~~~~~ 202 (269)
....+|+||+++|++++.+...|+.+..... ...++...++. .......+++++.+|++|+++|++++..++|+
T Consensus 67 ~~~~~G~Sg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~ 143 (145)
T PF01694_consen 67 NQPYVGASGAVFGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVI---ILLLGFIPNISFLGHLGGFLAGLLYGFLILRR 143 (145)
T ss_dssp -----SSHHHHHHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCH---HHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH-
T ss_pred ccccCCCcccchHHHHHHHHHHhhccchhhcchHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2278999999999999988887776433321 11122111111 11111257899999999999999999999876
Q ss_pred c
Q 046439 203 M 203 (269)
Q Consensus 203 ~ 203 (269)
+
T Consensus 144 ~ 144 (145)
T PF01694_consen 144 P 144 (145)
T ss_dssp -
T ss_pred c
Confidence 5
No 6
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.78 E-value=5.7e-20 Score=164.81 Aligned_cols=138 Identities=20% Similarity=0.295 Sum_probs=99.2
Q ss_pred hhhccccchHHhHhHhhcCChhHHHHHHHHHHHHhH-hhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 046439 44 ETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLE 122 (269)
Q Consensus 44 ~~~~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-lE~~~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~ 122 (269)
+...++|+||++||+|+|+|+.|+++||+.+..+|. +|+. .|..|+..+|+++++.|++++++.-
T Consensus 112 ~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~----~G~~RiglIYl~gg~aGSlls~l~d---------- 177 (316)
T KOG2289|consen 112 KPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQV----HGFLRIGLIYLAGGVAGSLLSSLFD---------- 177 (316)
T ss_pred ChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhh----cCceEEeeehhhhhhhhHHHHHHhc----------
Confidence 344459999999999999999999999999999995 9999 6999999999999999999876531
Q ss_pred cccccccchhHHHHHHHHHHHHHhc-CCCceeeeeccchhhH-HHHHHHH---HHHHhhcCchhHHHhHHHHHHHHHHHH
Q 046439 123 YFRRVTAVGYSCVVFGWMTILSVKQ-PSSKLDLFGFLSLPIS-FAPFESL---IFTSIIVPQASFLGHLSGIIVGYAIAW 197 (269)
Q Consensus 123 ~~~~~~~vGaSg~v~gl~~~~~~~~-p~~~~~l~~~~~i~~~-~~~~~~l---~~~~~~~~~~s~~aHl~G~l~G~l~~~ 197 (269)
++...+||||++|||+++...-. -|.+. ..-+.. ....+.+ .......+.+++.+|++|+..|..+++
T Consensus 178 --~~~~sVGASggvfaLlgA~Ls~l~~Nw~~-----m~~~~~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~f 250 (316)
T KOG2289|consen 178 --PNSISVGASGGVFALLGAHLSNLLTNWTI-----MKNKFAALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGF 250 (316)
T ss_pred --cCCceecccHHHHHHHHHHHHHHHhhHHH-----hcchHHHHHHHHHHHHHHHhhccccceeccccccccCCCcchhH
Confidence 46679999999999999874321 11110 000010 0011111 111123356778889888888888888
Q ss_pred HHhhc
Q 046439 198 GLIHG 202 (269)
Q Consensus 198 ~~~~~ 202 (269)
....+
T Consensus 251 il~~~ 255 (316)
T KOG2289|consen 251 VLHIG 255 (316)
T ss_pred Hhhhc
Confidence 76654
No 7
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=99.64 E-value=4.8e-15 Score=126.78 Aligned_cols=173 Identities=23% Similarity=0.269 Sum_probs=137.0
Q ss_pred hccC-ccHHHHHHHHHHHHHHHHhhccccccccccchhhhcc-ccchHHhHhHhhcCC-hhHHHHHHHHHHHHhH-hhhh
Q 046439 8 EIME-KPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVD-GHHWRIITSAFSHIS-VLHLVFNMSALWSLGV-VEQL 83 (269)
Q Consensus 8 ~~~~-~pvt~~li~i~v~vfll~~~~~~~~~~~~l~~~~~~~-~q~wrllT~~F~H~~-~~Hll~Nm~~L~~~G~-lE~~ 83 (269)
.+.+ +|+|+.....|+++.++.+..-+++.++.++|+.+.+ .|+||++|+.+.-+. -+|.++||+.+|..++ +|+-
T Consensus 8 ~~~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g 87 (239)
T KOG0858|consen 8 FYLQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEG 87 (239)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcC
Confidence 3344 7799999999999999998887788899999999986 999999999999976 4899999999999997 9986
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHhcCCCceeeeeccchhhH
Q 046439 84 GDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPIS 163 (269)
Q Consensus 84 ~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~~~i~~~ 163 (269)
.-++ -+++|+...+.++++-.+.+.. + ....+ .++-++.+...++..+|+.++++++.+.++..
T Consensus 88 ~f~~-rtadf~~mllf~~~l~~~~~~~-~-------------~~~fL-g~~l~~~l~YvWs~~Np~~~v~F~g~~~f~a~ 151 (239)
T KOG0858|consen 88 SFRG-RTADFLYMLLFGAVLLTLTGLF-V-------------YIVFL-GQSLVFMLVYVWSKRNPDVIVSFFGLITFKAP 151 (239)
T ss_pred CCCC-chhHHHHHHHHHHHHHHHHHHH-H-------------HHHHH-HHHHHHHHHHHHHhhCCCceEEEEEEecCccc
Confidence 4110 2577876666555555443321 1 11223 45567788888999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCchhHHHhHHHHHHHHHHHHH
Q 046439 164 FAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198 (269)
Q Consensus 164 ~~~~~~l~~~~~~~~~~s~~aHl~G~l~G~l~~~~ 198 (269)
|+||+++.++.+...+ + ...+-|+++|++|-..
T Consensus 152 YlPwvll~fs~l~g~~-~-~~dllGi~~GHiy~fl 184 (239)
T KOG0858|consen 152 YLPWVLLGFSFLFGGS-I-LVDLLGIIVGHIYYFL 184 (239)
T ss_pred cchHHHHHHHHHhCCc-h-HHHHHhhhhheeEEEE
Confidence 9999998888766543 4 8999999999987554
No 8
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=99.61 E-value=1.7e-14 Score=123.03 Aligned_cols=175 Identities=23% Similarity=0.299 Sum_probs=131.3
Q ss_pred ccHHHHHHHHHHHHHHHHhhccccccccccchhhhcc-ccchHHhHhHhhcCCh-hHHHHHHHHHHHHhH-hhhhccCCc
Q 046439 12 KPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVD-GHHWRIITSAFSHISV-LHLVFNMSALWSLGV-VEQLGDVGL 88 (269)
Q Consensus 12 ~pvt~~li~i~v~vfll~~~~~~~~~~~~l~~~~~~~-~q~wrllT~~F~H~~~-~Hll~Nm~~L~~~G~-lE~~~~~~~ 88 (269)
+|+|+.++..++++.++....-.++.++.++++.+.+ +|+||++|+.|..++. .++++|++.++..++ +|+..-. -
T Consensus 2 PpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~-~ 80 (197)
T PF04511_consen 2 PPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQ-G 80 (197)
T ss_pred ChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCC-C
Confidence 6899999999999998887765667778899988875 9999999999998776 699999999999997 9997311 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHhcCCCceeeeeccchhhHHHHHH
Q 046439 89 GTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFE 168 (269)
Q Consensus 89 G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~~~i~~~~~~~~ 168 (269)
.+.+|+...+.++....+++.+.. ....+.... .++...++...++..+|+.++++++++++|.+++|++
T Consensus 81 ~~ady~~~ll~~~~~i~~~~~~~~---------~~~~~~~~l-~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~ 150 (197)
T PF04511_consen 81 RSADYLWFLLFGASLILILSLLIG---------PYFFNIPFL-GSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWV 150 (197)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhc---------cchhHHHHH-HHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHH
Confidence 246776554433333322222111 000011223 4667888888999999999999999889999999999
Q ss_pred HHHHHHhhcCchhHHHhHHHHHHHHHHHHH
Q 046439 169 SLIFTSIIVPQASFLGHLSGIIVGYAIAWG 198 (269)
Q Consensus 169 ~l~~~~~~~~~~s~~aHl~G~l~G~l~~~~ 198 (269)
.+++..+..+ .+...++.|+++|++|-..
T Consensus 151 ~~~~~~l~~~-~~~~~~l~Gi~~Ghly~fl 179 (197)
T PF04511_consen 151 LLAFSLLFGG-SSPIPDLLGILVGHLYYFL 179 (197)
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHHHHH
Confidence 8887765554 3567999999999999765
No 9
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.39 E-value=4.1e-13 Score=123.52 Aligned_cols=140 Identities=18% Similarity=0.130 Sum_probs=104.6
Q ss_pred ccchHHhHhHhhcCChhHHHHHHHHHHHHhH-hhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 046439 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127 (269)
Q Consensus 49 ~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-lE~~~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~ 127 (269)
.|.||+.|+.|+|+|..|++..+.+.+.+-+ +|+. .|+.|...+|+++++.|++.+.++. +..
T Consensus 449 dQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL----~g~~riAIiy~~SGitGNLASAIFl------------pY~ 512 (652)
T KOG2290|consen 449 DQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKL----AGWHRIAIIYFLSGITGNLASAIFL------------PYR 512 (652)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh----hcchhhheeeecccccccchheeee------------ccc
Confidence 8999999999999999999999999998887 9999 8999999999999999998875421 455
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCceeeeeccchhhHHHHHHHHHHHHhhcCchhHHHhHHHHHHHHHHHHHHhhccch
Q 046439 128 TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNN 205 (269)
Q Consensus 128 ~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~~~i~~~~~~~~~l~~~~~~~~~~s~~aHl~G~l~G~l~~~~~~~~~~~ 205 (269)
+.+|.||+-+|+++...+-.-+.+..+-.-...-..+++.++.+.+ .+.|.++++||+.|.+.|++.+..+++-.+.
T Consensus 513 ~eVgPa~sQ~Gila~l~vEl~qs~~il~~~w~a~~~Lia~~L~L~i-GliPWiDN~aHlfG~i~GLl~s~~~~PYi~F 589 (652)
T KOG2290|consen 513 AEVGPAGSQFGILACLFVELFQSWQILERPWRAFFHLIATLLVLCI-GLIPWIDNWAHLFGTIFGLLTSIIFLPYIDF 589 (652)
T ss_pred cccCCcccccchHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHHHhhccccc
Confidence 7899999999998866543222221111000011112222211222 4668999999999999999999999887665
No 10
>COG5291 Predicted membrane protein [Function unknown]
Probab=99.16 E-value=7e-11 Score=101.19 Aligned_cols=164 Identities=20% Similarity=0.250 Sum_probs=107.8
Q ss_pred CccHHHHHHHHHHHHHHHHhhccccccccccchhhhcc-ccchHHhHhHhhcCCh-hHHHHHHHHHHHHhH-hhhhccCC
Q 046439 11 EKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVD-GHHWRIITSAFSHISV-LHLVFNMSALWSLGV-VEQLGDVG 87 (269)
Q Consensus 11 ~~pvt~~li~i~v~vfll~~~~~~~~~~~~l~~~~~~~-~q~wrllT~~F~H~~~-~Hll~Nm~~L~~~G~-lE~~~~~~ 87 (269)
=+|+|+.+..+..++.++.......+.++.+.++...+ .|+||++|+....++. +..++|.+.+|...+ +|+-.
T Consensus 19 IPPITRy~~ll~~a~til~~~~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~--- 95 (313)
T COG5291 19 IPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGC--- 95 (313)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccc---
Confidence 58899999888888888776655555555666666665 9999999999888865 799999999999997 99875
Q ss_pred cchH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHhcCCCceeeeeccchhhHHH
Q 046439 88 LGTA--YYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFA 165 (269)
Q Consensus 88 ~G~~--~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~~~i~~~~~ 165 (269)
+|+. +|..+.+...++--.++.+ + ....++ -++-.-++-..|...+|+.++.++++++++.+|+
T Consensus 96 f~~~lv~Y~~yl~~~~l~i~a~s~I-~------------gg~saL-~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v~gkYl 161 (313)
T COG5291 96 FNTSLVEYFWYLLVISLVIFAISNI-Y------------GGISAL-GTSFSATITYIWSKRNPRAIIQFFGFISVPGKYL 161 (313)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHH-h------------cchhhh-cchhhhheeeeeeecCCceEEEEEEeeecchhhh
Confidence 4544 5543322222221111111 1 011112 1222223334567788999999999999999999
Q ss_pred HHHHHHHHHhhcCchhHHHhHHHHHHH
Q 046439 166 PFESLIFTSIIVPQASFLGHLSGIIVG 192 (269)
Q Consensus 166 ~~~~l~~~~~~~~~~s~~aHl~G~l~G 192 (269)
|++.+.++.+... ....-.+-|+.+|
T Consensus 162 P~Illgfsfl~~~-g~~i~~vlGf~~g 187 (313)
T COG5291 162 PFILLGFSFLSRR-GISIDDVLGFVVG 187 (313)
T ss_pred hHHHHHHHHHhcC-Cccceeeeeeeec
Confidence 9998877765432 2334444555544
No 11
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=99.07 E-value=6.3e-11 Score=104.71 Aligned_cols=177 Identities=21% Similarity=0.194 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccc--ccccccchhhhccccchHHhHhHhhcCChhHHHHHHHHHHHHhH--hhhhccCCcc
Q 046439 14 ATSCIIGICSVIWFYIQKKNIG--YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV--VEQLGDVGLG 89 (269)
Q Consensus 14 vt~~li~i~v~vfll~~~~~~~--~~~~~l~~~~~~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~--lE~~~~~~~G 89 (269)
+...++.+|+.+|.++...... ...+.++ +.....-.|.++++.|.|.+.+|+..||+.++.+.. +... +|
T Consensus 117 ~v~~ll~~n~~vf~lWrv~~~~~~~~~~mls-~~~~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~----~~ 191 (310)
T KOG2980|consen 117 VVFGLLIANAFVFTLWRVPQKQFTMIPWMLS-RNAYKTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGS----LG 191 (310)
T ss_pred chhHHHHHHHHHHHHHHhcchhhhhhhHHhh-cccccccceeEEeehhcchhHhhhcHHHHHHHHHhcccccCC----cc
Confidence 7889999999999998775421 1111111 122234456699999999999999999998887763 4444 67
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHhcCCCceeeeeccchhhHH-HHHH
Q 046439 90 TAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISF-APFE 168 (269)
Q Consensus 90 ~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~~~i~~~~-~~~~ 168 (269)
...+..+|+.....+..+ ..... .+..+..+.+||||++|++.+..+.+.|+.+..+.+..+++.-. .++-
T Consensus 192 ~~~~~AlylSa~~~~~~i-~~~~~-------v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga~~~~~ 263 (310)
T KOG2980|consen 192 FSSFFALYLSAGVKGLFI-SVKDK-------VPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGAGLAFK 263 (310)
T ss_pred hhhcccceecccccccee-Eeecc-------ccccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccccchhHHH
Confidence 777877776333333221 11110 11224567899999999999999999999998888777777632 1211
Q ss_pred HHHHH---Hhh--cCchhHHHhHHHHHHHHHHHHHHhhcc
Q 046439 169 SLIFT---SII--VPQASFLGHLSGIIVGYAIAWGLIHGM 203 (269)
Q Consensus 169 ~l~~~---~~~--~~~~s~~aHl~G~l~G~l~~~~~~~~~ 203 (269)
.++.. .+. ...-++.||++|.+.|..++....+..
T Consensus 264 ~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri 303 (310)
T KOG2980|consen 264 AIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWARI 303 (310)
T ss_pred HHHHhhhcceeeccccchhHhhhcchHHHHHHHHHHHHHH
Confidence 11111 111 123577899999999999998875544
No 12
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=98.69 E-value=4.1e-08 Score=74.54 Aligned_cols=90 Identities=26% Similarity=0.484 Sum_probs=69.4
Q ss_pred ccchHHhHhHhhcCChhHHHHHHHHHHHHhH-hhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 046439 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127 (269)
Q Consensus 49 ~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-lE~~~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~ 127 (269)
.++||++|+.|++.++..+++|.+.++..|+ +|+. .|+++++.++....+.++++..+.+.+......++.+-..
T Consensus 6 ~~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~----WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~ 81 (99)
T PF08551_consen 6 PYPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPI----WGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFV 81 (99)
T ss_pred eehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHh----cChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEE
Confidence 4899999999999999999999999999998 9999 5999999999888888888776555443322222221124
Q ss_pred ccchhHHHHHHHHHH
Q 046439 128 TAVGYSCVVFGWMTI 142 (269)
Q Consensus 128 ~~vGaSg~v~gl~~~ 142 (269)
+-.|.+|...|++++
T Consensus 82 ~i~G~~~~~~g~lVa 96 (99)
T PF08551_consen 82 PISGFMGVLAGFLVA 96 (99)
T ss_pred EecCcHHhHhheEEE
Confidence 566778877776543
No 13
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=1.4e-06 Score=75.83 Aligned_cols=123 Identities=21% Similarity=0.317 Sum_probs=84.2
Q ss_pred ccCccHHHHHHHHHHHHHHHHhhccccccccccchhhhcc--ccchHHhHhHhhcCChhHHHHHHHHHHHHhHhhhhccC
Q 046439 9 IMEKPATSCIIGICSVIWFYIQKKNIGYSHVGLSYETAVD--GHHWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGDV 86 (269)
Q Consensus 9 ~~~~pvt~~li~i~v~vfll~~~~~~~~~~~~l~~~~~~~--~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~lE~~~~~ 86 (269)
..+-|+|+.+++-..++-++..+.. .-..+.+++++... .|+||++-+.|+..+-..+.+-.+.+|.+-.+||.
T Consensus 8 ~~nmpVTK~~~iT~~~~~vvagI~~-~k~~f~l~y~~~l~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~fR~~ERl--- 83 (323)
T KOG4463|consen 8 FHNMPVTKAFVITSALFTVVAGIQG-RKSKFGLSYQDILEKYFQYWRLLMSQFAFSNTPELMFGLYILYYFRVFERL--- 83 (323)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhh-cccccccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH---
Confidence 4467899987776665555443332 12356788877653 89999999999999999999999999998889999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHH
Q 046439 87 GLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMT 141 (269)
Q Consensus 87 ~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~ 141 (269)
+|+.||..+.+.++..+-++...+..+....+ .+.-.++..|.+|+...
T Consensus 84 -LGShky~~fiv~s~~~~~l~~~il~~l~~~~~-----~nl~~~qp~~liFa~~~ 132 (323)
T KOG4463|consen 84 -LGSHKYSVFIVFSGTVSLLLEVILLSLLKDTT-----ANLLTSQPYGLIFASFI 132 (323)
T ss_pred -hccccceeehhHHHHHHHHHHHHHHHHHHHHH-----hhhhhcCCCceeeeecc
Confidence 89999998777666666555433222222111 12234555556666653
No 14
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=98.07 E-value=5.7e-05 Score=67.25 Aligned_cols=149 Identities=17% Similarity=0.228 Sum_probs=92.3
Q ss_pred ccchHHhHhHhhcCChhHHHHHHHHHHHHhH-hhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 046439 49 GHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRV 127 (269)
Q Consensus 49 ~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-lE~~~~~~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~ 127 (269)
..+|+++|+.|+-.+.+-.+.|.+.|-..|+ +|+. .|+..++..+.+.-...+++..+.+.+.-..+....+-..
T Consensus 65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~----Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~ 140 (326)
T KOG2890|consen 65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPN----WGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYI 140 (326)
T ss_pred hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccC----CCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEE
Confidence 6899999999999999999999999999998 9999 5888888877655444444433222222112222222234
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCceeeeeccchhhHHHHHHHHHHHHhhc-CchhHHHhHHHHHHHHHHHHHHhh
Q 046439 128 TAVGYSCVVFGWMTILSVKQPSSKLDLFGFLSLPISFAPFESLIFTSIIV-PQASFLGHLSGIIVGYAIAWGLIH 201 (269)
Q Consensus 128 ~~vGaSg~v~gl~~~~~~~~p~~~~~l~~~~~i~~~~~~~~~l~~~~~~~-~~~s~~aHl~G~l~G~l~~~~~~~ 201 (269)
+-.|..|.+-|+++++-...|+..+...-...+..+..|...++.+.+.. -.-...+.+.-+.+|...+|.|++
T Consensus 141 ~i~G~~gilaGilVa~kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLR 215 (326)
T KOG2890|consen 141 PIHGTTGILAGILVAWKQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLR 215 (326)
T ss_pred EeccchHHHHHHHHHHHHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhhe
Confidence 57899999999999999999998654332222221122322222111110 012344455555566666666554
No 15
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=52.02 E-value=22 Score=32.03 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHhH-hhhhccCCcchHHHHHHHHHHHHHHHHHH
Q 046439 65 LHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108 (269)
Q Consensus 65 ~Hll~Nm~~L~~~G~-lE~~~~~~~G~~~~l~~yl~~~l~~~~~~ 108 (269)
..+++|.+.|+.-++ +.+. ...+|.+ +++++|++.+
T Consensus 11 ~Nf~~d~~LL~~t~~~lk~~----~~~~Rll----~ga~iGa~~~ 47 (288)
T TIGR02854 11 ENFIIDYFLLYLTARTLKDK----VSQWRLL----LAALIGSLYV 47 (288)
T ss_pred HHHHHHHHHHHHHHHHhhcc----chHHHHH----HHHHHHHHHH
Confidence 467888889999888 4443 4566655 5555555543
No 16
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.63 E-value=1.4e+02 Score=22.36 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=10.0
Q ss_pred cCCCccccccccccCC
Q 046439 225 RSGTYDFNFLEIESVT 240 (269)
Q Consensus 225 ~~~~~~~~~~~~~~~~ 240 (269)
++.+++|..+..+++.
T Consensus 75 ~rn~LkW~~Pa~esss 90 (101)
T KOG4112|consen 75 RRNPLKWAQPAIESSS 90 (101)
T ss_pred hcCcccccCCcccccc
Confidence 3577787776555554
No 17
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=33.91 E-value=1.1e+02 Score=27.46 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHhH-hhhhccCCcchHHHHHHHHHHHHHHHHHH
Q 046439 65 LHLVFNMSALWSLGV-VEQLGDVGLGTAYYLQYTLVLVVLSGLLV 108 (269)
Q Consensus 65 ~Hll~Nm~~L~~~G~-lE~~~~~~~G~~~~l~~yl~~~l~~~~~~ 108 (269)
..+++|.+.|+.-++ +-+. ...+|.+ +++.+|++.+
T Consensus 11 ~N~~md~~lL~~t~~~~~~~----~~~~Rll----~~A~~Gal~~ 47 (293)
T PF03419_consen 11 VNFLMDYFLLWLTARLLKRR----ASRWRLL----LGAAIGALYS 47 (293)
T ss_pred HHHHHHHHHHHHHHHHhcCC----CcHHHHH----HHHHHHHHHH
Confidence 467888888988887 4333 4667765 4555555544
No 18
>PHA02966 hypothetical protein; Provisional
Probab=28.15 E-value=21 Score=23.85 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=14.9
Q ss_pred CCCCcccccccccCccc
Q 046439 240 TDPSLPSVRFIGNGRTL 256 (269)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ 256 (269)
.||..|++|..|-+.|-
T Consensus 26 pdptteeidt~gadini 42 (67)
T PHA02966 26 PDPTTEEIDTFGADINI 42 (67)
T ss_pred CCCChhhhhhcccceee
Confidence 79999999999988774
No 19
>COG4769 Predicted membrane protein [Function unknown]
Probab=24.19 E-value=4.2e+02 Score=22.08 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=19.7
Q ss_pred ccchhHHHHHHHHHHHHHhcCC-Cceeeeecc
Q 046439 128 TAVGYSCVVFGWMTILSVKQPS-SKLDLFGFL 158 (269)
Q Consensus 128 ~~vGaSg~v~gl~~~~~~~~p~-~~~~l~~~~ 158 (269)
...+++|++.+.++.+...+-+ ...+..++-
T Consensus 80 Fl~sfaG~i~S~L~m~~l~~f~~k~~S~lgiS 111 (181)
T COG4769 80 FLYSFAGAILSTLFMYFLYQFGPKYLSLLGIS 111 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEeeeehh
Confidence 4567888888887777665544 334455543
Done!