Query 046439
Match_columns 269
No_of_seqs 273 out of 1496
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 21:21:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 100.0 7.7E-29 2.6E-33 207.5 18.2 171 10-201 2-180 (181)
2 2nr9_A Protein GLPG homolog; i 100.0 2.2E-28 7.4E-33 207.2 13.3 172 10-203 7-187 (196)
3 2juj_A E3 ubiquitin-protein li 91.3 0.0053 1.8E-07 39.8 -4.0 28 241-268 5-35 (56)
4 2ooa_A E3 ubiquitin-protein li 83.4 0.057 1.9E-06 34.7 -2.8 27 242-268 10-39 (52)
5 2d9s_A CBL E3 ubiquitin protei 83.1 0.066 2.2E-06 34.6 -2.6 28 241-268 7-37 (53)
6 2oo9_A E3 ubiquitin-protein li 82.4 0.1 3.5E-06 32.5 -1.8 18 251-268 15-32 (46)
7 1veg_A NEDD8 ultimate buster-1 30.1 4.4 0.00015 28.6 -2.1 28 241-268 27-57 (83)
8 2g3q_A Protein YBL047C; endocy 29.4 1.5 5.1E-05 26.6 -4.1 19 250-268 14-32 (43)
9 1wji_A Tudor domain containing 23.2 5.3 0.00018 26.5 -2.6 27 242-268 8-37 (63)
10 1vg5_A RSGI RUH-014, rhomboid 21.6 6.7 0.00023 26.9 -2.4 28 241-268 27-57 (73)
11 1dv0_A DNA repair protein HHR2 20.6 7.4 0.00025 24.1 -2.2 24 244-267 8-31 (47)
12 2jy5_A Ubiquilin-1; UBA, alter 20.1 6.6 0.00023 24.9 -2.5 22 247-268 19-41 (52)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.96 E-value=7.7e-29 Score=207.50 Aligned_cols=171 Identities=23% Similarity=0.339 Sum_probs=130.2
Q ss_pred cCccHHHHHHHHHHHHHHHHhhcccc--ccccccchhhhccccchHHhHhHhhcCChhHHHHHHHHHHHHhH-hhhhccC
Q 046439 10 MEKPATSCIIGICSVIWFYIQKKNIG--YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDV 86 (269)
Q Consensus 10 ~~~pvt~~li~i~v~vfll~~~~~~~--~~~~~l~~~~~~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-lE~~~~~ 86 (269)
+++|+|+.++++|+++|+++...+.. .+.++++++...++|+||++|++|+|.|+.|+++||+.++.+|+ +|+.
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~--- 78 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKR--- 78 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH---
Confidence 46889999999999999988765421 24556666655569999999999999999999999999999997 9999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHH---hcCCCceeeeeccchhhH
Q 046439 87 GLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSV---KQPSSKLDLFGFLSLPIS 163 (269)
Q Consensus 87 ~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~---~~p~~~~~l~~~~~i~~~ 163 (269)
+|++|++.+|+.+++.+++.+.+.. +. ..+||||+++|++++... ..|+.+.. ++.+..
T Consensus 79 -~G~~~fl~~yl~~~i~~~l~~~~~~------------~~-~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~ 140 (181)
T 2xov_A 79 -LGSGKLIVITLISALLSGYVQQKFS------------GP-WFGGLSGVVYALMGYVWLRGERDPQSGIY----LQRGLI 140 (181)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHHHH------------CS-CCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHH
T ss_pred -hChHHHHHHHHHHHHHHHHHHHHhc------------CC-CceeHHHHHHHHHHHHHHHHhhCcCceee----eHHHHH
Confidence 7999999999999999988764321 12 389999999999987643 56665542 133333
Q ss_pred HHHHHHHHHHHh--hcCchhHHHhHHHHHHHHHHHHHHhh
Q 046439 164 FAPFESLIFTSI--IVPQASFLGHLSGIIVGYAIAWGLIH 201 (269)
Q Consensus 164 ~~~~~~l~~~~~--~~~~~s~~aHl~G~l~G~l~~~~~~~ 201 (269)
....+.++.... ..+++|+.||++|+++|++++..+.|
T Consensus 141 ~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 141 IFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp HHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence 222222222211 23589999999999999999988765
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.95 E-value=2.2e-28 Score=207.24 Aligned_cols=172 Identities=19% Similarity=0.245 Sum_probs=126.9
Q ss_pred cCccHHHHHHHHHHHHHHHHhhcccc--ccccccchhhhccccchHHhHhHhhcCChhHHHHHHHHHHHHhH-hhhhccC
Q 046439 10 MEKPATSCIIGICSVIWFYIQKKNIG--YSHVGLSYETAVDGHHWRIITSAFSHISVLHLVFNMSALWSLGV-VEQLGDV 86 (269)
Q Consensus 10 ~~~pvt~~li~i~v~vfll~~~~~~~--~~~~~l~~~~~~~~q~wrllT~~F~H~~~~Hll~Nm~~L~~~G~-lE~~~~~ 86 (269)
+++|+|..++++|+++|+++...+.. .+.++++++.+..+|+||++|++|+|.|+.|+++||+.++.+|+ +|+.
T Consensus 7 ~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~--- 83 (196)
T 2nr9_A 7 QQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERT--- 83 (196)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH---
Confidence 35789999999999999987765321 24566666666669999999999999999999999999999997 9999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccchhHHHHHHHHHHHHHh---cCCCceeeeeccchhhH
Q 046439 87 GLGTAYYLQYTLVLVVLSGLLVLGIYHLLIQRFKLEYFRRVTAVGYSCVVFGWMTILSVK---QPSSKLDLFGFLSLPIS 163 (269)
Q Consensus 87 ~~G~~~~l~~yl~~~l~~~~~~~l~~~ll~~~~~~~~~~~~~~vGaSg~v~gl~~~~~~~---~p~~~~~l~~~~~i~~~ 163 (269)
+|++|++.+|+.+++.+++.+.+.. +. ..+||||++||++++.... .|+. . ..+.+..
T Consensus 84 -~G~~~~l~~yl~~~~~~~l~~~~~~------------~~-~~vGaSGai~gl~g~~~~~~~~~~~~-~----~~~~~~~ 144 (196)
T 2nr9_A 84 -FGSVKLLMLYVVASAITGYVQNYVS------------GP-AFFGLSGVVYAVLGYVFIRDKLNHHL-F----DLPEGFF 144 (196)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHHHH------------CS-CCCCSHHHHHHHHHHHHHHHHSSTTS-C----CCCCSST
T ss_pred -HChHHHHHHHHHHHHHHHHHHHHhc------------CC-CeeeHHHHHHHHHHHHHHHHHhcchh-h----cchHHHH
Confidence 7999999999999999988764321 12 3899999999999876542 3332 1 1122221
Q ss_pred HHHHHHHHHH--Hh-hcCchhHHHhHHHHHHHHHHHHHHhhcc
Q 046439 164 FAPFESLIFT--SI-IVPQASFLGHLSGIIVGYAIAWGLIHGM 203 (269)
Q Consensus 164 ~~~~~~l~~~--~~-~~~~~s~~aHl~G~l~G~l~~~~~~~~~ 203 (269)
....+.+++. .. ..+++|+.||++|+++|++++..+.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~~ 187 (196)
T 2nr9_A 145 TMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLR 187 (196)
T ss_dssp TTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhcc
Confidence 1110111111 11 2347999999999999999999886654
No 3
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=91.34 E-value=0.0053 Score=39.82 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=23.1
Q ss_pred CCCccccccc---ccCcccccccccccCccC
Q 046439 241 DPSLPSVRFI---GNGRTLQMSAIPVEGVEI 268 (269)
Q Consensus 241 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 268 (269)
+|..++|..+ |++|+.++|||.++||||
T Consensus 5 ~p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv 35 (56)
T 2juj_A 5 PQLSSEIENLMSQGYSYQDIQKALVIAQNNI 35 (56)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHTTTCS
T ss_pred CCChHHHHHHHHcCCCHHHHHHHHHHhcccH
Confidence 3455566655 999999999999999997
No 4
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=83.38 E-value=0.057 Score=34.70 Aligned_cols=27 Identities=7% Similarity=0.022 Sum_probs=22.0
Q ss_pred CCccccccc---ccCcccccccccccCccC
Q 046439 242 PSLPSVRFI---GNGRTLQMSAIPVEGVEI 268 (269)
Q Consensus 242 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 268 (269)
|..++|..+ |++|..+++||.+++|||
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnv 39 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEIAQNNV 39 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHHTTTCH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHHhCCCH
Confidence 333666666 999999999999999986
No 5
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=83.06 E-value=0.066 Score=34.56 Aligned_cols=28 Identities=11% Similarity=0.052 Sum_probs=22.9
Q ss_pred CCCccccccc---ccCcccccccccccCccC
Q 046439 241 DPSLPSVRFI---GNGRTLQMSAIPVEGVEI 268 (269)
Q Consensus 241 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 268 (269)
+|...+|+.+ |++|..+++||.+++|||
T Consensus 7 ~~~e~~I~~L~~lGF~r~~ai~AL~~a~nnv 37 (53)
T 2d9s_A 7 GQLSSEIERLMSQGYSYQDIQKALVIAHNNI 37 (53)
T ss_dssp SCSHHHHHHHHHHTCCHHHHHHHHHHTTTCH
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHhcCCH
Confidence 4445556666 999999999999999986
No 6
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=82.39 E-value=0.1 Score=32.48 Aligned_cols=18 Identities=17% Similarity=0.098 Sum_probs=17.5
Q ss_pred ccCcccccccccccCccC
Q 046439 251 GNGRTLQMSAIPVEGVEI 268 (269)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~ 268 (269)
|++++.++|||..+||||
T Consensus 15 Gf~~~~~~rAL~ia~Nni 32 (46)
T 2oo9_A 15 GYSYQDIQKALVIAQNNI 32 (46)
T ss_dssp TBCHHHHHHHHHHTTTCH
T ss_pred CCCHHHHHHHHHHhhccH
Confidence 999999999999999997
No 7
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.15 E-value=4.4 Score=28.60 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=22.6
Q ss_pred CCCccccccc---ccCcccccccccccCccC
Q 046439 241 DPSLPSVRFI---GNGRTLQMSAIPVEGVEI 268 (269)
Q Consensus 241 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 268 (269)
.|.++.|+.+ |++|..+++||...++|+
T Consensus 27 ~~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdv 57 (83)
T 1veg_A 27 SPSQESINQLVYMGFDTVVAEAALRVFGGNV 57 (83)
T ss_dssp CCCHHHHHHHHHHSCCHHHHHHHHHHTTTCH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCH
Confidence 3456666666 999999999999998874
No 8
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=29.42 E-value=1.5 Score=26.62 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=15.6
Q ss_pred cccCcccccccccccCccC
Q 046439 250 IGNGRTLQMSAIPVEGVEI 268 (269)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~ 268 (269)
.|++|..+++||...++|+
T Consensus 14 MGF~~~~a~~AL~~~~~n~ 32 (43)
T 2g3q_A 14 MGFTEEEAHNALEKCNWDL 32 (43)
T ss_dssp TTSCHHHHHHHHHHHTSCH
T ss_pred cCCCHHHHHHHHHHhCcCH
Confidence 3999999999998877663
No 9
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.20 E-value=5.3 Score=26.50 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=20.2
Q ss_pred CCccccccc---ccCcccccccccccCccC
Q 046439 242 PSLPSVRFI---GNGRTLQMSAIPVEGVEI 268 (269)
Q Consensus 242 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 268 (269)
++.+.|+.+ |++|..+++||...++|+
T Consensus 8 ~~~~~I~~L~~MGF~~~~a~~AL~~~~~nv 37 (63)
T 1wji_A 8 VDEKALKHITEMGFSKEASRQALMDNGNNL 37 (63)
T ss_dssp SCHHHHHHHHTTTCCHHHHHHHHHHTTSCH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCH
Confidence 444555444 999999999998888764
No 10
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.57 E-value=6.7 Score=26.89 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=21.4
Q ss_pred CCCccccccc---ccCcccccccccccCccC
Q 046439 241 DPSLPSVRFI---GNGRTLQMSAIPVEGVEI 268 (269)
Q Consensus 241 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 268 (269)
.+..+.|+.+ |++|..+++||...++|+
T Consensus 27 ~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nv 57 (73)
T 1vg5_A 27 AASEEQIQKLVAMGFDRTQVEVALAAADDDL 57 (73)
T ss_dssp CCCHHHHHHHHTTTCCHHHHHHHHHHHTSCH
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHhCCCH
Confidence 3445555555 999999999999888764
No 11
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=20.58 E-value=7.4 Score=24.11 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=18.4
Q ss_pred cccccccccCcccccccccccCcc
Q 046439 244 LPSVRFIGNGRTLQMSAIPVEGVE 267 (269)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~ 267 (269)
++.+...|++|+.+++|+...+.|
T Consensus 8 I~rL~~mGF~~~~a~~Al~a~~~n 31 (47)
T 1dv0_A 8 IERLKALGFPESLVIQAYFACEKN 31 (47)
T ss_dssp HTTTTTTTCCHHHHHHHHTTTTSC
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCC
Confidence 344455599999999999887765
No 12
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=20.14 E-value=6.6 Score=24.88 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=17.2
Q ss_pred cccccc-CcccccccccccCccC
Q 046439 247 VRFIGN-GRTLQMSAIPVEGVEI 268 (269)
Q Consensus 247 ~~~~~~-~~~~~~~~~~~~~~~~ 268 (269)
+.+.|+ +|...++||...++|+
T Consensus 19 L~~MGF~~~~~~~~AL~~t~gn~ 41 (52)
T 2jy5_A 19 LSAMGFLNREANLQALIATGGDI 41 (52)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCH
T ss_pred HHHcCCCCHHHHHHHHHHhCCCH
Confidence 334499 9999999998887764
Done!