BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046440
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 26/200 (13%)
Query: 24 AVLDVEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGF 82
+V +V D E ++T L + E+ K G K D R + W++ +
Sbjct: 1 SVNEVPDYHEDIHTYLREMEVKCKPKVGYMKKQ---PDITNSMRAILVDWLVEVGEEYKL 57
Query: 83 RPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG- 141
+ +T +L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 58 QNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDD 114
Query: 142 ---------LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN- 185
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+
Sbjct: 115 TYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDA 174
Query: 186 --LMEHRPSAIAVAATLVAF 203
+++ PS IA AA +A
Sbjct: 175 DPYLKYLPSVIAAAAFHLAL 194
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 26/200 (13%)
Query: 24 AVLDVEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGF 82
+V +V D E ++T L + E+ K G K D R + W++ +
Sbjct: 1 SVNEVPDYHEDIHTYLREMEVKCKPKVGYMKKQ---PDITNSMRAILVDWLVEVGEEYKL 57
Query: 83 RPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG- 141
+ +T +L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 58 QNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDD 114
Query: 142 ---------LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN- 185
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+
Sbjct: 115 TYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDA 174
Query: 186 --LMEHRPSAIAVAATLVAF 203
+++ PS IA AA +A
Sbjct: 175 DPYLKYLPSVIAAAAFHLAL 194
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 26/200 (13%)
Query: 24 AVLDVEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGF 82
+V +V D E ++T L + E+ K G K D R + W++ +
Sbjct: 1 SVNEVPDYHEDIHTYLREMEVKCKPKVGYMKKQ---PDITNSMRAILVDWLVEVGEEYKL 57
Query: 83 RPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG- 141
+ +T +L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 58 QNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDD 114
Query: 142 ---------LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN- 185
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+
Sbjct: 115 TYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDA 174
Query: 186 --LMEHRPSAIAVAATLVAF 203
+++ PS IA AA +A
Sbjct: 175 DPYLKYLPSVIAAAAFHLAL 194
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 26/197 (13%)
Query: 27 DVEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRPK 85
+V D E ++T L + E+ K G K D R + W++ + + +
Sbjct: 4 EVPDYHEDIHTYLREMEVKCKPKVGYMKKQ---PDITNSMRAILVDWLVEVGEEYKLQNE 60
Query: 86 TAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG---- 141
T +L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 61 TLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYT 117
Query: 142 ------LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN---L 186
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+
Sbjct: 118 KKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPY 177
Query: 187 MEHRPSAIAVAATLVAF 203
+++ PS IA AA +A
Sbjct: 178 LKYLPSVIAAAAFHLAL 194
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 26/197 (13%)
Query: 27 DVEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRPK 85
+V D E ++T L + E+ K G K D R + W++ + + +
Sbjct: 4 EVPDYHEDIHTYLREMEVKCKPKVGYMKKQ---PDITNSMRAILVDWLVEVGEEYKLQNE 60
Query: 86 TAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG---- 141
T +L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 61 TLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYT 117
Query: 142 ------LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN---L 186
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+
Sbjct: 118 KKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPY 177
Query: 187 MEHRPSAIAVAATLVAF 203
+++ PS IA AA +A
Sbjct: 178 LKYLPSVIAAAAFHLAL 194
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 26/200 (13%)
Query: 24 AVLDVEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGF 82
+V +V D E ++T L + E+ K G K D R + W++ +
Sbjct: 1 SVNEVPDYHEDIHTYLREMEVKCKPKVGYMKKQ---PDITNSMRAILVDWLVEVGEEYKL 57
Query: 83 RPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG- 141
+ +T +L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 58 QNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDD 114
Query: 142 ---------LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN- 185
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+
Sbjct: 115 TYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDA 174
Query: 186 --LMEHRPSAIAVAATLVAF 203
+++ PS IA AA +A
Sbjct: 175 DPYLKYLPSVIAAAAFHLAL 194
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 26/200 (13%)
Query: 24 AVLDVEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGF 82
+V +V D E ++T L + E+ K G K D R + W++ +
Sbjct: 1 SVNEVPDYHEDIHTYLREMEVKCKPKVGYMKKQ---PDITNSMRAILVDWLVEVGEEYKL 57
Query: 83 RPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG- 141
+ +T +L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 58 QNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDD 114
Query: 142 ---------LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN- 185
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+
Sbjct: 115 TYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDA 174
Query: 186 --LMEHRPSAIAVAATLVAF 203
+++ PS IA AA +A
Sbjct: 175 DPYLKYLPSVIAAAAFHLAL 194
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 26/200 (13%)
Query: 24 AVLDVEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGF 82
+V +V D E ++T L + E+ K G K D R + W++ +
Sbjct: 1 SVNEVPDYHEDIHTYLREMEVKCKPKVGYMKKQ---PDITNSMRAILVDWLVEVGEEYKL 57
Query: 83 RPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG- 141
+ +T +L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 58 QNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDD 114
Query: 142 ---------LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN- 185
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+
Sbjct: 115 TYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDA 174
Query: 186 --LMEHRPSAIAVAATLVAF 203
+++ PS IA AA +A
Sbjct: 175 DPYLKYLPSVIAAAAFHLAL 194
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 26/200 (13%)
Query: 24 AVLDVEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGF 82
+V +V D E ++T L + E+ K G K D R + W++ +
Sbjct: 1 SVNEVPDYHEDIHTYLREMEVKCKPKVGYMKKQ---PDITNSMRAILVDWLVEVGEEYKL 57
Query: 83 RPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG- 141
+ +T +L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 58 QNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDD 114
Query: 142 ---------LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN- 185
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+
Sbjct: 115 TYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDA 174
Query: 186 --LMEHRPSAIAVAATLVAF 203
+++ PS IA AA +A
Sbjct: 175 DPYLKYLPSVIAAAAFHLAL 194
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 88/198 (44%), Gaps = 26/198 (13%)
Query: 26 LDVEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRP 84
++V D E ++T L + E+ K G K D R + W++ + +
Sbjct: 1 MEVPDYHEDIHTYLREMEVKCKPKVGYMKKQ---PDITNSMRAILVDWLVEVGEEYKLQN 57
Query: 85 KTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG--- 141
+T +L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 58 ETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTY 114
Query: 142 -------LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN--- 185
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+
Sbjct: 115 TKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADP 174
Query: 186 LMEHRPSAIAVAATLVAF 203
+++ PS IA AA +A
Sbjct: 175 YLKYLPSVIAGAAFHLAL 192
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 26/197 (13%)
Query: 27 DVEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRPK 85
+V D E ++T L + E+ K G K D R + W++ + + +
Sbjct: 7 EVPDYHEDIHTYLREMEVKCKPKVGYMKKQ---PDITNSMRAILVDWLVEVGEEYKLQNE 63
Query: 86 TAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG---- 141
T +L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 64 TLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYT 120
Query: 142 ------LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN---L 186
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+
Sbjct: 121 KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPY 180
Query: 187 MEHRPSAIAVAATLVAF 203
+++ PS IA AA +A
Sbjct: 181 LKYLPSVIAGAAFHLAL 197
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 26/197 (13%)
Query: 27 DVEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRPK 85
+V D E ++T L + E+ K G K D R + W++ + + +
Sbjct: 2 EVPDYHEDIHTYLREMEVKCKPKVGYMKKQ---PDITNSMRAILVDWLVEVGEEYKLQNE 58
Query: 86 TAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG---- 141
T +L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 59 TLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYT 115
Query: 142 ------LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN---L 186
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+
Sbjct: 116 KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPY 175
Query: 187 MEHRPSAIAVAATLVAF 203
+++ PS IA AA +A
Sbjct: 176 LKYLPSVIAGAAFHLAL 192
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 26/197 (13%)
Query: 27 DVEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRPK 85
+V D E ++T L + E+ K G K D R + W++ + + +
Sbjct: 1 EVPDYHEDIHTYLREMEVKCKPKVGYMKKQ---PDITNSMRAILVDWLVEVGEEYKLQNE 57
Query: 86 TAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG---- 141
T +L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 58 TLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYT 114
Query: 142 ------LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN---L 186
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+
Sbjct: 115 KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPY 174
Query: 187 MEHRPSAIAVAATLVAF 203
+++ PS IA AA +A
Sbjct: 175 LKYLPSVIAGAAFHLAL 191
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 26/197 (13%)
Query: 27 DVEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRPK 85
+V D E ++T L + E+ K G K D R + W++ + + +
Sbjct: 3 EVPDYHEDIHTYLREMEVKCKPKVGYMKKQ---PDITNSMRAILVDWLVEVGEEYKLQNE 59
Query: 86 TAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG---- 141
T +L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 60 TLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYT 116
Query: 142 ------LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN---L 186
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+
Sbjct: 117 KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPY 176
Query: 187 MEHRPSAIAVAATLVAF 203
+++ PS IA AA +A
Sbjct: 177 LKYLPSVIAGAAFHLAL 193
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 26/196 (13%)
Query: 28 VEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRPKT 86
V D E ++T L + E+ K G K D R + W++ + + +T
Sbjct: 1 VPDYHEDIHTYLREMEVKCKPKVGYMKKQ---PDITNSMRAILVDWLVEVGEEYKLQNET 57
Query: 87 AYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG----- 141
+L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 58 LHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTK 114
Query: 142 -----LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN---LM 187
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+ +
Sbjct: 115 KQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYL 174
Query: 188 EHRPSAIAVAATLVAF 203
++ PS IA AA +A
Sbjct: 175 KYLPSVIAGAAFHLAL 190
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 26/196 (13%)
Query: 28 VEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRPKT 86
V D E ++T L + E+ K G K D R + W++ + + +T
Sbjct: 1 VPDYHEDIHTYLREMEVKCKPKVGYMKKQ---PDITNSMRAILVDWLVEVGEEYKLQNET 57
Query: 87 AYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG----- 141
+L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 58 LHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTK 114
Query: 142 -----LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN---LM 187
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+ +
Sbjct: 115 KQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYL 174
Query: 188 EHRPSAIAVAATLVAF 203
++ PS IA AA +A
Sbjct: 175 KYLPSVIAGAAFHLAL 190
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 71/153 (46%), Gaps = 22/153 (14%)
Query: 70 IAWILNTRAVFGFRPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECN 129
+ W++ + + +T +L+V Y+DRFLS+ + KL +L+ A + +A+K EE
Sbjct: 39 VDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIY 95
Query: 130 SENGAHVINNNG----------LENGINHSISF------LHHFIRKFCKDSSPSNVLPRT 173
A + +E+ + ++F ++ F+ ++ P+N +
Sbjct: 96 PPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVES 155
Query: 174 VALILAIMREIN---LMEHRPSAIAVAATLVAF 203
+A+ L + I+ +++ PS IA AA +A
Sbjct: 156 LAMFLGELSLIDADPYLKYLPSVIAGAAFHLAL 188
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 91/197 (46%), Gaps = 26/197 (13%)
Query: 27 DVEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRPK 85
+V D E ++T L + E+ K G + +++ ++ ++ W++ + + +
Sbjct: 3 EVPDYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVD---WLVEVGEEYKLQNE 59
Query: 86 TAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG---- 141
T +L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 60 TLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYS 116
Query: 142 ------LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN---L 186
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+
Sbjct: 117 KKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPY 176
Query: 187 MEHRPSAIAVAATLVAF 203
+++ PS IA AA +A
Sbjct: 177 LKYLPSLIAGAAFHLAL 193
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 90/196 (45%), Gaps = 26/196 (13%)
Query: 28 VEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRPKT 86
V D E ++T L + E+ K G + +++ ++ ++ W++ + + +T
Sbjct: 1 VPDYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVD---WLVEVGEEYKLQNET 57
Query: 87 AYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG----- 141
+L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 58 LHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSK 114
Query: 142 -----LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN---LM 187
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+ +
Sbjct: 115 KQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYL 174
Query: 188 EHRPSAIAVAATLVAF 203
++ PS IA AA +A
Sbjct: 175 KYLPSLIAGAAFHLAL 190
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 90/196 (45%), Gaps = 26/196 (13%)
Query: 28 VEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRPKT 86
V D E ++T L + E+ K G + +++ ++ ++ W++ + + +T
Sbjct: 1 VPDYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVD---WLVEVGEEYKLQNET 57
Query: 87 AYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG----- 141
+L+V Y+DRFLS+ + KL +L+ A + +A+K EE A +
Sbjct: 58 LHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSK 114
Query: 142 -----LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN---LM 187
+E+ + ++F ++ F+ ++ P+N ++A+ L + I+ +
Sbjct: 115 KQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPANCKVESLAMFLGELSLIDADPYL 174
Query: 188 EHRPSAIAVAATLVAF 203
++ PS IA AA +A
Sbjct: 175 KYLPSLIAGAAFHLAL 190
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 25 VLDVEDEDEYVNTLGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRP 84
VL + +E + +KE ++ + ++ +L ++ L+ W++ V+
Sbjct: 12 VLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLD---WLMEVCEVYKLHR 68
Query: 85 KTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEE 127
+T YL+ + DR+++T+ L ++L+ ++ + +AAK+EE
Sbjct: 69 ETFYLAQDFFDRYMATQENVVKTL--LQLIGISSLFIAAKLEE 109
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 22/152 (14%)
Query: 70 IAWILNTRAVFGFRPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECN 129
I W++ + F +T Y++V+ +DRF+ + L +L+ V + +A+K EE
Sbjct: 40 IDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNCVPKKML---QLVGVTAMFIASKYEEMY 96
Query: 130 -SENG--AHVINNN-------GLENGINHSISF------LHHFIRKFCKDSSPSNVLPRT 173
E G A V +N +E I +++F HF+R+ K +V T
Sbjct: 97 PPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGE-VDVEQHT 155
Query: 174 VA--LILAIMREINLMEHRPSAIAVAATLVAF 203
+A L+ M + +++ PS IA A +A
Sbjct: 156 LAKYLMELTMLDYDMVHFPPSQIAAGAFCLAL 187
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 89 LSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEE 127
L++ YLDRFLS + +L +LL C+ VA+KM+E
Sbjct: 66 LAMNYLDRFLSLEPVKKSRL---QLLGATCMFVASKMKE 101
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 70 IAWILNTRAVFGFRPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEEC 128
I W++ + F +T Y++V+ +DRF+ + L +L+ V + +A+K EE
Sbjct: 42 IDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKML---QLVGVTAMFIASKYEEM 97
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 89 LSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEE 127
L++ YLDRFLS + +L +LL C+ VA+KM+E
Sbjct: 80 LAMNYLDRFLSLEPVKKSRL---QLLGATCMFVASKMKE 115
>pdb|3AGR|A Chain A, Crystal Structure Of Nucleoside Triphosphate Hydrolases
From Neospora Caninum
pdb|3AGR|B Chain B, Crystal Structure Of Nucleoside Triphosphate Hydrolases
From Neospora Caninum
Length = 602
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 170 LPRTVALILAIMREINLMEHRPSAIAVAATLVAFDQK 206
L +T+AL +++++ + EH+PS+I+ T+V D K
Sbjct: 531 LCKTIALTVSLLQHMEAGEHKPSSISWQKTVVGPDGK 567
>pdb|1RU4|A Chain A, Crystal Structure Of Pectate Lyase Pel9a
Length = 400
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 115 SVACVSVAAKMEECNSENGAHVINNNGLENGINHSI-----SFLHHFIRK 159
SVA +V+ ++ N+ G VINN +NGIN+ S H+ R
Sbjct: 263 SVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRN 312
>pdb|2VWS|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWT|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
Length = 267
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 4 DDSLSGLLCPESKTCLDEDSAVLDVEDEDEYVNTLGDKEISFGF 47
+DSL L+ ESKT LD +LDVE D D S G+
Sbjct: 143 NDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGY 186
>pdb|3HXL|A Chain A, Crystal Structure Of The Sheath Tail Protein (dsy3957)
From Desulfitobacterium Hafniense, Northeast Structural
Genomics Consortium Target Dhr18
Length = 446
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 34 YVNTLGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAW 72
Y NTL D + F G+TD +V +D+ +EA AW
Sbjct: 386 YXNTLQDIDAIKNFD-GQTDLTVQSGNDVDAVYIEAYAW 423
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,889,535
Number of Sequences: 62578
Number of extensions: 285752
Number of successful extensions: 574
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 29
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)