BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046441
         (465 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 41.6 bits (96), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 18/117 (15%)

Query: 160 EHLEIGNCRSLTCIFSK-NELPAT------LESLEVGNLP-----------PSLKVLDIY 201
           EH  + N +SL   ++    LPA+      L+SL++ N P           P L+ LD+ 
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237

Query: 202 GCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFP 258
           GC  L +          L+ + +  C NL  LP  +H L QL+++ +  C NL   P
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294



 Score = 32.7 bits (73), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 88/221 (39%), Gaps = 40/221 (18%)

Query: 197 VLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLES 256
            +D  G  +L    ++      LET++ L    L+ LP+ + +L +L+E+SI  C  L  
Sbjct: 110 TIDAAGLXELPDTXQQF---AGLETLT-LARNPLRALPASIASLNRLRELSIRACPELTE 165

Query: 257 FPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDG---LPTN 313
            PE       L+     G        +GL NL+SL+            LE  G   LP +
Sbjct: 166 LPE------PLASTDASGEH------QGLVNLQSLR------------LEWTGIRSLPAS 201

Query: 314 LHSLEIDGNMEIWKSTIE-WGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPA 372
           + +L+   +++I  S +   G   H    L  L + GC       P+   R        A
Sbjct: 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--------A 253

Query: 373 CLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFP 413
            L  L++ +  NL  L   I  L  L +L L  C  L   P
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294


>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
 pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
 pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
 pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
          Length = 393

 Score = 31.2 bits (69), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 327 KSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMI 379
           K+  EWGR     + L   +ISG D      P  D RL T L LP  +  LMI
Sbjct: 112 KAIKEWGRPKSEITHLVFCSISGID-----MPGADYRLATLLGLPLTVNRLMI 159


>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
 pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
 pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
 pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
          Length = 393

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 327 KSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMI 379
           K+  EWGR     + L   +ISG D      P  D RL T L LP  +  LMI
Sbjct: 112 KAIKEWGRPKSEITHLVFCSISGID-----MPGADYRLATLLGLPLTVNRLMI 159


>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
           Rbc36 In Complex With H-Trisaccharide
          Length = 229

 Score = 28.5 bits (62), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 224 ILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGL 262
            +CC  L  LP G+  L  L  +++++   L+S P G  
Sbjct: 118 FMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAF 155


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.139    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,052,855
Number of Sequences: 62578
Number of extensions: 521166
Number of successful extensions: 1029
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1018
Number of HSP's gapped (non-prelim): 14
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)