Query 046441
Match_columns 465
No_of_seqs 188 out of 2482
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 12:08:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.6E-27 7.8E-32 255.5 22.0 413 22-461 138-584 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.3E-26 2.9E-31 251.1 23.5 272 24-323 93-367 (968)
3 PLN03210 Resistant to P. syrin 99.9 7.5E-25 1.6E-29 238.0 25.0 341 23-414 557-911 (1153)
4 KOG4194 Membrane glycoprotein 99.9 1E-25 2.2E-30 211.3 4.3 363 22-427 76-447 (873)
5 PLN03210 Resistant to P. syrin 99.9 7.2E-23 1.6E-27 222.6 23.5 315 22-389 587-910 (1153)
6 KOG4194 Membrane glycoprotein 99.9 1.9E-23 4.1E-28 196.2 4.5 338 23-405 101-448 (873)
7 KOG0444 Cytoskeletal regulator 99.9 3.5E-24 7.5E-29 202.7 -6.2 362 24-433 7-376 (1255)
8 KOG0618 Serine/threonine phosp 99.9 3.9E-23 8.5E-28 203.8 -1.7 367 19-431 41-488 (1081)
9 KOG0444 Cytoskeletal regulator 99.8 3.9E-21 8.5E-26 182.2 -3.8 318 24-389 55-379 (1255)
10 KOG0472 Leucine-rich repeat pr 99.8 1.1E-21 2.3E-26 176.8 -10.0 363 24-430 91-539 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 4E-21 8.7E-26 173.1 -10.4 240 24-300 45-308 (565)
12 KOG0618 Serine/threonine phosp 99.7 3.1E-19 6.7E-24 176.6 -4.5 334 23-408 90-488 (1081)
13 PRK15387 E3 ubiquitin-protein 99.6 2E-14 4.4E-19 146.5 15.8 257 72-410 202-458 (788)
14 PRK15387 E3 ubiquitin-protein 99.6 5E-14 1.1E-18 143.7 16.5 256 97-431 201-457 (788)
15 PRK15370 E3 ubiquitin-protein 99.5 1.3E-13 2.8E-18 141.4 11.3 242 98-405 179-424 (754)
16 PRK15370 E3 ubiquitin-protein 99.5 2.9E-13 6.2E-18 138.9 12.7 245 120-431 178-427 (754)
17 KOG4341 F-box protein containi 99.4 2.8E-15 6.1E-20 136.5 -6.0 235 24-279 138-386 (483)
18 KOG4237 Extracellular matrix p 99.2 2E-13 4.3E-18 123.7 -4.4 248 156-430 90-357 (498)
19 KOG4341 F-box protein containi 99.2 2.5E-13 5.5E-18 124.0 -5.5 42 394-435 399-442 (483)
20 KOG4237 Extracellular matrix p 99.2 3.6E-13 7.7E-18 122.1 -5.0 87 213-300 270-357 (498)
21 KOG0617 Ras suppressor protein 99.2 7.4E-13 1.6E-17 106.5 -4.3 161 213-414 29-190 (264)
22 cd00116 LRR_RI Leucine-rich re 99.2 4.6E-12 1E-16 120.0 0.1 206 193-405 51-287 (319)
23 KOG0617 Ras suppressor protein 99.1 1.9E-12 4E-17 104.3 -3.3 156 193-359 33-190 (264)
24 cd00116 LRR_RI Leucine-rich re 99.1 2.5E-11 5.4E-16 115.0 0.8 233 193-431 23-290 (319)
25 KOG4658 Apoptotic ATPase [Sign 98.9 2E-09 4.4E-14 112.7 6.8 135 283-429 711-856 (889)
26 KOG3207 Beta-tubulin folding c 98.9 4.5E-10 9.8E-15 103.6 1.1 205 193-405 121-335 (505)
27 KOG4658 Apoptotic ATPase [Sign 98.8 9.5E-10 2.1E-14 115.1 2.2 227 193-435 545-786 (889)
28 PRK15386 type III secretion pr 98.6 2.2E-07 4.8E-12 87.7 11.1 64 213-282 48-111 (426)
29 KOG1259 Nischarin, modulator o 98.6 7.8E-09 1.7E-13 91.1 1.3 130 266-414 285-416 (490)
30 KOG0532 Leucine-rich repeat (L 98.6 2.5E-09 5.4E-14 101.9 -3.2 189 196-429 78-270 (722)
31 KOG3207 Beta-tubulin folding c 98.6 1.3E-08 2.8E-13 94.2 1.1 36 216-251 245-281 (505)
32 KOG2120 SCF ubiquitin ligase, 98.5 1.2E-09 2.5E-14 96.0 -6.9 106 24-130 185-296 (419)
33 KOG2120 SCF ubiquitin ligase, 98.4 3.1E-09 6.7E-14 93.4 -6.6 181 241-429 185-373 (419)
34 KOG1909 Ran GTPase-activating 98.4 2.1E-08 4.6E-13 90.3 -2.0 248 19-300 25-309 (382)
35 PRK15386 type III secretion pr 98.4 1.2E-06 2.5E-11 82.9 9.3 71 46-128 50-120 (426)
36 PF14580 LRR_9: Leucine-rich r 98.4 1.3E-07 2.7E-12 79.6 1.9 105 240-349 41-149 (175)
37 KOG1259 Nischarin, modulator o 98.4 1.2E-07 2.6E-12 83.7 1.8 125 193-323 284-410 (490)
38 COG4886 Leucine-rich repeat (L 98.3 7.5E-07 1.6E-11 87.0 5.9 127 193-323 116-243 (394)
39 PF14580 LRR_9: Leucine-rich r 98.3 1.1E-06 2.3E-11 74.1 4.6 125 287-428 17-149 (175)
40 COG4886 Leucine-rich repeat (L 98.2 9E-07 2E-11 86.4 4.6 172 156-350 115-287 (394)
41 KOG1909 Ran GTPase-activating 98.1 5.4E-07 1.2E-11 81.4 -1.2 231 193-431 30-310 (382)
42 PLN03150 hypothetical protein; 98.0 1.1E-05 2.3E-10 83.0 7.7 107 219-325 420-528 (623)
43 PF13855 LRR_8: Leucine rich r 98.0 7.9E-06 1.7E-10 56.1 3.7 55 373-429 2-59 (61)
44 KOG1947 Leucine rich repeat pr 97.9 6.7E-07 1.5E-11 89.9 -3.2 194 214-437 240-445 (482)
45 KOG1947 Leucine rich repeat pr 97.9 1.7E-06 3.6E-11 87.0 -0.8 39 70-108 242-280 (482)
46 KOG0532 Leucine-rich repeat (L 97.9 6.5E-07 1.4E-11 85.9 -4.6 100 195-299 145-244 (722)
47 PF13855 LRR_8: Leucine rich r 97.8 1.8E-05 3.9E-10 54.3 3.6 57 194-251 2-59 (61)
48 PLN03150 hypothetical protein; 97.8 3.3E-05 7.1E-10 79.5 6.5 112 242-357 419-531 (623)
49 PF12799 LRR_4: Leucine Rich r 97.7 3.6E-05 7.9E-10 48.5 3.5 41 24-66 1-41 (44)
50 KOG2982 Uncharacterized conser 97.7 4E-05 8.7E-10 68.1 4.9 188 215-412 69-265 (418)
51 KOG3665 ZYG-1-like serine/thre 97.6 1.8E-05 3.9E-10 81.4 1.6 160 240-406 121-285 (699)
52 KOG1859 Leucine-rich repeat pr 97.6 2.1E-06 4.5E-11 84.8 -6.3 122 290-430 165-290 (1096)
53 KOG0531 Protein phosphatase 1, 97.5 1.5E-05 3.2E-10 78.2 -0.8 189 193-405 95-286 (414)
54 PF12799 LRR_4: Leucine Rich r 97.4 0.00018 3.9E-09 45.3 3.4 41 372-414 1-41 (44)
55 KOG0531 Protein phosphatase 1, 97.4 3.7E-05 8E-10 75.4 0.4 81 44-130 91-172 (414)
56 KOG1859 Leucine-rich repeat pr 97.4 2.6E-06 5.6E-11 84.2 -7.7 123 194-323 165-290 (1096)
57 KOG3665 ZYG-1-like serine/thre 97.2 0.00027 5.9E-09 72.8 3.2 33 266-298 123-157 (699)
58 KOG2982 Uncharacterized conser 97.1 0.00043 9.4E-09 61.7 3.3 83 23-107 70-156 (418)
59 COG5238 RNA1 Ran GTPase-activa 96.9 0.00013 2.8E-09 64.2 -1.3 197 23-251 29-252 (388)
60 KOG1644 U2-associated snRNP A' 96.9 0.0029 6.3E-08 53.4 6.3 102 312-429 42-150 (233)
61 KOG1644 U2-associated snRNP A' 96.5 0.0058 1.3E-07 51.7 5.3 81 193-276 42-124 (233)
62 KOG2123 Uncharacterized conser 96.2 0.00015 3.2E-09 63.9 -5.6 56 288-350 18-73 (388)
63 COG5238 RNA1 Ran GTPase-activa 95.7 0.0027 5.8E-08 56.1 0.0 206 193-405 30-281 (388)
64 KOG2123 Uncharacterized conser 95.3 0.0011 2.3E-08 58.8 -4.0 99 24-126 19-123 (388)
65 KOG4579 Leucine-rich repeat (L 94.9 0.0015 3.3E-08 51.5 -3.7 58 241-300 53-111 (177)
66 KOG3864 Uncharacterized conser 94.3 0.0067 1.4E-07 51.3 -1.5 67 67-133 121-189 (221)
67 KOG2739 Leucine-rich acidic nu 94.0 0.017 3.8E-07 50.9 0.4 37 239-275 63-101 (260)
68 KOG2739 Leucine-rich acidic nu 94.0 0.031 6.8E-07 49.3 2.0 106 310-430 41-154 (260)
69 KOG3864 Uncharacterized conser 93.4 0.011 2.5E-07 50.0 -1.7 81 266-349 102-185 (221)
70 KOG4579 Leucine-rich repeat (L 93.3 0.0092 2E-07 47.2 -2.2 84 213-299 49-133 (177)
71 PF00560 LRR_1: Leucine Rich R 92.8 0.048 1E-06 28.4 0.7 20 25-45 1-20 (22)
72 PF13306 LRR_5: Leucine rich r 92.8 0.4 8.6E-06 38.1 6.6 13 237-249 31-43 (129)
73 PF13306 LRR_5: Leucine rich r 92.8 0.62 1.3E-05 37.0 7.6 80 236-321 7-90 (129)
74 PF13504 LRR_7: Leucine rich r 92.0 0.12 2.6E-06 24.9 1.5 10 397-406 2-11 (17)
75 smart00367 LRR_CC Leucine-rich 86.6 0.46 9.9E-06 25.8 1.4 16 419-434 2-17 (26)
76 smart00369 LRR_TYP Leucine-ric 77.2 1.8 3.9E-05 23.3 1.5 18 396-414 2-19 (26)
77 smart00370 LRR Leucine-rich re 77.2 1.8 3.9E-05 23.3 1.5 18 396-414 2-19 (26)
78 smart00364 LRR_BAC Leucine-ric 72.1 2.6 5.6E-05 22.9 1.2 17 372-389 2-18 (26)
79 KOG3763 mRNA export factor TAP 53.2 8.3 0.00018 38.3 1.8 68 46-114 216-287 (585)
80 PF05725 FNIP: FNIP Repeat; I 49.1 34 0.00074 21.1 3.6 32 396-428 12-43 (44)
81 PF13516 LRR_6: Leucine Rich r 47.9 13 0.00029 19.3 1.4 12 71-82 2-13 (24)
82 KOG3763 mRNA export factor TAP 44.8 13 0.00029 37.0 1.8 77 11-87 205-286 (585)
83 smart00365 LRR_SD22 Leucine-ri 40.9 23 0.00051 19.2 1.6 16 396-412 2-17 (26)
84 smart00368 LRR_RI Leucine rich 32.8 32 0.00069 18.8 1.4 13 24-36 2-14 (28)
85 KOG4308 LRR-containing protein 26.2 0.75 1.6E-05 45.7 -10.2 12 394-405 402-413 (478)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=3.6e-27 Score=255.51 Aligned_cols=413 Identities=17% Similarity=0.139 Sum_probs=197.4
Q ss_pred cccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCC-CCcCcCcccEEEccCCccccccccccccCCCCCcc
Q 046441 22 LSCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP-EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLE 100 (465)
Q Consensus 22 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 100 (465)
.+++|++|++++|.....+|..++++++|++|++++|.....+| .++.+++|++|++++|.....+|..+ ...++|+
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~ 215 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL--GQMKSLK 215 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH--cCcCCcc
Confidence 35778888888777645667777777888888887774444455 45567777777777765433444432 2346677
Q ss_pred EEEecCCcCcceecCc-cCCCCccEEeeccccCccccccccccccCC-------------CCCCchhhhcccCCeeeccC
Q 046441 101 ILEIWICCSLTYIAGV-QLPRSLKRLHILLCNNIRTLTVEEGIQCSN-------------SSSSSRRYISSLLEHLEIGN 166 (465)
Q Consensus 101 ~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~L~~L~l~~ 166 (465)
.|+++++.....++.. ..+++|+.|++++|.-...+ |..+.... ...+.....+++|++|++++
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI--PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceecccc--ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence 7777766322233322 44566666666665322223 33333200 00000000133444444443
Q ss_pred CCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEE
Q 046441 167 CRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEI 246 (465)
Q Consensus 167 c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 246 (465)
+ .+.. .+|..+ ..+ ++|+.|++.+|...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|
T Consensus 294 n-~l~~-----~~p~~~-----~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 361 (968)
T PLN00113 294 N-SLSG-----EIPELV-----IQL-QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361 (968)
T ss_pred C-eecc-----CCChhH-----cCC-CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence 2 2211 111111 122 445555555544333444445555555555555554444444445555555555
Q ss_pred ecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCC-CCCCCccceeeecCCccc
Q 046441 247 SIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE-DGLPTNLHSLEIDGNMEI 325 (465)
Q Consensus 247 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 325 (465)
++++|.....+|.....+++|+.|++++|.....+|..++.+++|+.|++++|......+. ...+++|+.|++++|..
T Consensus 362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l- 440 (968)
T PLN00113 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL- 440 (968)
T ss_pred ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcc-
Confidence 5555432223333333333444444444443334444444455555555555432222221 12334444444444441
Q ss_pred ccccccccccCCCCCCccEEEecCCCCccccccccc------------ccc----cCCCCCccccceEeccCCCCCc-cc
Q 046441 326 WKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLED------------KRL----GTALPLPACLASLMIGNFPNLE-RL 388 (465)
Q Consensus 326 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~------------~~~----~~~~~~~~~L~~L~l~~c~~l~-~l 388 (465)
....+.. +..+++|++|++++| .-...+|... +.+ ...+..+++|++|+++++ ++. .+
T Consensus 441 ~~~~~~~---~~~l~~L~~L~L~~n-~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~ 515 (968)
T PLN00113 441 QGRINSR---KWDMPSLQMLSLARN-KFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN-KLSGEI 515 (968)
T ss_pred cCccChh---hccCCCCcEEECcCc-eeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCC-cceeeC
Confidence 1111111 223444444444443 0001111100 000 011234567777777774 444 55
Q ss_pred cccccCCCCcceEEecCCCCCCcCCCC-CCcccccEEeecCCchHHHHHhhcCCCcccccCCcceEeecCchhh
Q 046441 389 SSSIVDLQNLTELYLGDCPKLKYFPEK-GLPSSLLRLYIDECPLIAEKCRKDGGQYWDLLTHIPSVLIDLAKEE 461 (465)
Q Consensus 389 ~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (465)
|..+.++++|++|++++|.--..+|.. .-+++|++|++++|..... .......+..+..+.+.++...
T Consensus 516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE-----IPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccccc-----CChhHhcCcccCEEeccCCcce
Confidence 666777788888888875433334442 1257788888887754321 1112334455556666655443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=1.3e-26 Score=251.10 Aligned_cols=272 Identities=19% Similarity=0.207 Sum_probs=123.4
Q ss_pred cccceeecccCCCCccccccc-ccCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEE
Q 046441 24 CRLEYLRLRYCEGLVKLPQSS-LSLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEIL 102 (465)
Q Consensus 24 ~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 102 (465)
++|++|++++|.....+|..+ ..+++|++|++++|.....+| .+.+++|++|++++|.....++..+ ..+++|++|
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~~~~~p~~~--~~l~~L~~L 169 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLSGEIPNDI--GSFSSLKVL 169 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC-ccccCCCCEEECcCCcccccCChHH--hcCCCCCEE
Confidence 455555555554422444332 245555555555542222222 2334555555555543222233221 223455555
Q ss_pred EecCCcCcceecCc-cCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcch
Q 046441 103 EIWICCSLTYIAGV-QLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPA 181 (465)
Q Consensus 103 ~l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 181 (465)
++++|.....++.. ..+++|+.|++++|.-...+ |..+.. +++|+.|++++ +.+.. .+|.
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--p~~l~~-----------l~~L~~L~L~~-n~l~~-----~~p~ 230 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI--PRELGQ-----------MKSLKWIYLGY-NNLSG-----EIPY 230 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcC--ChHHcC-----------cCCccEEECcC-CccCC-----cCCh
Confidence 55554222222221 33445555555554322223 333332 34455555554 22221 1122
Q ss_pred hhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCC
Q 046441 182 TLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGG 261 (465)
Q Consensus 182 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 261 (465)
.+ +.+ ++|++|++.+|...+.+|..++.+++|++|++++|...+.+|..+..+++|++|++++|.....+|...
T Consensus 231 ~l-----~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 231 EI-----GGL-TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred hH-----hcC-CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH
Confidence 22 222 455555555544333445555555555555555554444445555555555555555553333344444
Q ss_pred CCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCC-CCCCCccceeeecCCc
Q 046441 262 LPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE-DGLPTNLHSLEIDGNM 323 (465)
Q Consensus 262 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 323 (465)
..+++|+.|++++|......|..+..+++|+.|++++|.....++. .+.+++|+.|++++|.
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 4445555555555544444454555555555555555543323332 2334455555555554
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=7.5e-25 Score=238.00 Aligned_cols=341 Identities=22% Similarity=0.302 Sum_probs=258.8
Q ss_pred ccccceeecccCCC------CcccccccccC-CCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCC
Q 046441 23 SCRLEYLRLRYCEG------LVKLPQSSLSL-SSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDT 95 (465)
Q Consensus 23 ~~~L~~L~l~~~~~------l~~l~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 95 (465)
+++|+.|.+.++.. ...+|..+..+ ++|+.|.+.++ .++.+|....+.+|+.|++.++. +..++... ..
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~--~~ 632 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGSK-LEKLWDGV--HS 632 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCcc-cccccccc--cc
Confidence 47778887764421 11456656555 46899999886 56778865567899999998854 77666553 34
Q ss_pred CCCccEEEecCCcCcceecCccCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCcccccc
Q 046441 96 NSSLEILEIWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFS 175 (465)
Q Consensus 96 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 175 (465)
.++|+.|+++++..++.++....+++|+.|++.+|..+..+ |..+.. +++|+.|++++|+.++. ++
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~l--p~si~~-----------L~~L~~L~L~~c~~L~~-Lp 698 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVEL--PSSIQY-----------LNKLEDLDMSRCENLEI-LP 698 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcccc--chhhhc-----------cCCCCEEeCCCCCCcCc-cC
Confidence 58899999998888888887777889999999999888877 777665 68899999999888776 44
Q ss_pred CCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccc
Q 046441 176 KNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLE 255 (465)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 255 (465)
.. .++ ++|+.|++.+|..+..+|.. ..+|+.|+++++. +..+|..+ .+++|++|.+.++....
T Consensus 699 ~~-----------i~l-~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 699 TG-----------INL-KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEK 761 (1153)
T ss_pred Cc-----------CCC-CCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhh
Confidence 31 123 78999999998877776642 4678899998865 45566654 57888888887653211
Q ss_pred ------cCCC-CCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccc
Q 046441 256 ------SFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKS 328 (465)
Q Consensus 256 ------~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 328 (465)
.++. ....+++|+.|++++|..+..+|..++++++|+.|++++|..++.+|....+++|++|++++|..+...
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccc
Confidence 1111 122346899999999988888999999999999999999988888887667889999999999866543
Q ss_pred cccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCCCC
Q 046441 329 TIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPK 408 (465)
Q Consensus 329 ~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 408 (465)
+. ..++|++|+++++ .++.+|... ..+++|+.|++.+|++++.++.....++.|+.+++++|..
T Consensus 842 p~-------~~~nL~~L~Ls~n--~i~~iP~si-------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 842 PD-------ISTNISDLNLSRT--GIEEVPWWI-------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred cc-------cccccCEeECCCC--CCccChHHH-------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 22 2468999999986 777777654 3677999999999999999988888899999999999998
Q ss_pred CCcCCC
Q 046441 409 LKYFPE 414 (465)
Q Consensus 409 l~~l~~ 414 (465)
++.++.
T Consensus 906 L~~~~l 911 (1153)
T PLN03210 906 LTEASW 911 (1153)
T ss_pred cccccC
Confidence 887543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1e-25 Score=211.32 Aligned_cols=363 Identities=19% Similarity=0.234 Sum_probs=260.7
Q ss_pred cccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCCCcC-cCcccEEEccCCccccccccccccCCCCCcc
Q 046441 22 LSCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVAL-PSKLKKIRISSCDALKSLPEAWMCDTNSSLE 100 (465)
Q Consensus 22 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 100 (465)
.|+.-+.|++++|..-..-+.+|.++++|+++++.+| .++.+|.++. ..+|+.|++.++ .+.++..... ...+.|+
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L-~~l~alr 152 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHN-LISSVTSEEL-SALPALR 152 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeecc-ccccccHHHH-HhHhhhh
Confidence 3556678999998873333567889999999999987 7788997776 566999999985 4776665422 3348899
Q ss_pred EEEecCCcCcceecCccCC--CCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCC
Q 046441 101 ILEIWICCSLTYIAGVQLP--RSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNE 178 (465)
Q Consensus 101 ~L~l~~~~~l~~~~~~~~~--~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 178 (465)
.||++.+ .+..++...++ .++++|++.+ ..++.+ ..+-+. .+.+|..|.+++ +.++. +|...
T Consensus 153 slDLSrN-~is~i~~~sfp~~~ni~~L~La~-N~It~l--~~~~F~----------~lnsL~tlkLsr-Nritt-Lp~r~ 216 (873)
T KOG4194|consen 153 SLDLSRN-LISEIPKPSFPAKVNIKKLNLAS-NRITTL--ETGHFD----------SLNSLLTLKLSR-NRITT-LPQRS 216 (873)
T ss_pred hhhhhhc-hhhcccCCCCCCCCCceEEeecc-cccccc--cccccc----------ccchheeeeccc-Ccccc-cCHHH
Confidence 9999996 78888877665 4899999988 466665 222111 155788888888 77776 55432
Q ss_pred cchhhhhcccCCCCCCccEEEecCCCChhhh-hhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccC
Q 046441 179 LPATLESLEVGNLPPSLKVLDIYGCPKLESI-AERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESF 257 (465)
Q Consensus 179 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l 257 (465)
+ .++ ++|+.|++..|. +..+ ...|.++++|+.|.+..|....---..+..+.++++|++..| .+...
T Consensus 217 F---------k~L-~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~v 284 (873)
T KOG4194|consen 217 F---------KRL-PKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAV 284 (873)
T ss_pred h---------hhc-chhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhh
Confidence 2 345 789999998865 4332 334788999999999987655433345667899999999988 56555
Q ss_pred CC-CCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCC--CCCCccceeeecCCcccccccccccc
Q 046441 258 PE-GGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEED--GLPTNLHSLEIDGNMEIWKSTIEWGR 334 (465)
Q Consensus 258 ~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~ 334 (465)
.. ..+.+.+|+.|+++.|..-...++.++-+++|++|+++.| .++.+++. ..+.+|++|.++.|. ++......
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~a-- 360 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGA-- 360 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccc-hHHHHhhH--
Confidence 54 5677889999999998755555677888889999999987 56666553 346789999999887 33333222
Q ss_pred cCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-cccCCCCcceEEecCCCCCCcCC
Q 046441 335 GFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGDCPKLKYFP 413 (465)
Q Consensus 335 ~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~ 413 (465)
+.++.+|++|++..+ .+...-.+. ...+..+++|++|++.+ +++++++. .+..++.||+|++.+ +-+.++.
T Consensus 361 -f~~lssL~~LdLr~N--~ls~~IEDa---a~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq 432 (873)
T KOG4194|consen 361 -FVGLSSLHKLDLRSN--ELSWCIEDA---AVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQ 432 (873)
T ss_pred -HHHhhhhhhhcCcCC--eEEEEEecc---hhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeec
Confidence 677889999999886 332211111 11223467999999999 89999987 778899999999999 6777776
Q ss_pred CCCC-cccccEEeec
Q 046441 414 EKGL-PSSLLRLYID 427 (465)
Q Consensus 414 ~~~~-~~~L~~L~l~ 427 (465)
...+ +-.|++|.+.
T Consensus 433 ~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 433 PNAFEPMELKELVMN 447 (873)
T ss_pred ccccccchhhhhhhc
Confidence 5444 3477777654
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=7.2e-23 Score=222.60 Aligned_cols=315 Identities=23% Similarity=0.349 Sum_probs=233.7
Q ss_pred cccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCC-CCcCcCcccEEEccCCccccccccccccCCCCCcc
Q 046441 22 LSCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP-EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLE 100 (465)
Q Consensus 22 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 100 (465)
.+.+|+.|.+.+++. +.+|..+ .+.+|++|++.++ .+..++ ....+++|+.|+++++..+..+|.. ...++|+
T Consensus 587 lp~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l---s~l~~Le 660 (1153)
T PLN03210 587 LPPKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL---SMATNLE 660 (1153)
T ss_pred cCcccEEEEecCCCC-CCCCCcC-CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCcc---ccCCccc
Confidence 346799999999876 8888776 4689999999987 566666 4556899999999988878888764 4468999
Q ss_pred EEEecCCcCcceecCc-cCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCc
Q 046441 101 ILEIWICCSLTYIAGV-QLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNEL 179 (465)
Q Consensus 101 ~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 179 (465)
.|++.+|..+..+|.. ..+++|+.|++++|..++.+ |..+. +++|+.|.+++|..+.. ++.
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L--p~~i~------------l~sL~~L~Lsgc~~L~~-~p~--- 722 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL--PTGIN------------LKSLYRLNLSGCSRLKS-FPD--- 722 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc--CCcCC------------CCCCCEEeCCCCCCccc-ccc---
Confidence 9999999888888765 66789999999999988888 76552 57899999999877665 332
Q ss_pred chhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEecccccccc------cc-ccccccCccccEEecccCc
Q 046441 180 PATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLK------IL-PSGLHNLRQLQEISIEKCG 252 (465)
Q Consensus 180 ~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~------~l-~~~~~~~~~L~~L~l~~~~ 252 (465)
.+++|+.|++.++. +..+|..+ .+++|++|.+..+.... .+ +......++|+.|++++|+
T Consensus 723 -----------~~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~ 789 (1153)
T PLN03210 723 -----------ISTNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP 789 (1153)
T ss_pred -----------ccCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence 12678888888855 66666654 57788888777643211 01 1112234678888888888
Q ss_pred ccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccc
Q 046441 253 NLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEW 332 (465)
Q Consensus 253 ~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 332 (465)
.+..+|..+..+++|+.|++++|..++.+|..+ .+++|+.|++++|..+..++. .+++|++|+++++. +...+..
T Consensus 790 ~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~-i~~iP~s- 864 (1153)
T PLN03210 790 SLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRTG-IEEVPWW- 864 (1153)
T ss_pred CccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCCCC-CccChHH-
Confidence 788888777778888888888888888887655 678888888888877766654 34688888888876 3333322
Q ss_pred cccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCcccc
Q 046441 333 GRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLS 389 (465)
Q Consensus 333 ~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 389 (465)
+..+++|+.|++.+| ..+..++... ..+++|+.+++++|.+++.++
T Consensus 865 ---i~~l~~L~~L~L~~C-~~L~~l~~~~-------~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 865 ---IEKFSNLSFLDMNGC-NNLQRVSLNI-------SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ---HhcCCCCCEEECCCC-CCcCccCccc-------ccccCCCeeecCCCccccccc
Confidence 567888888888886 5666666644 255688888888888887553
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.9e-23 Score=196.25 Aligned_cols=338 Identities=17% Similarity=0.235 Sum_probs=253.4
Q ss_pred ccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCC--CCcCcCcccEEEccCCccccccccccccCCCCCcc
Q 046441 23 SCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLE 100 (465)
Q Consensus 23 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 100 (465)
.++|+++.+.+|.. +.+|.......+|+.|.|.+| .+.++. .+..++.|++|+++.+ .+..++.... ...++++
T Consensus 101 l~nLq~v~l~~N~L-t~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sf-p~~~ni~ 176 (873)
T KOG4194|consen 101 LPNLQEVNLNKNEL-TRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRN-LISEIPKPSF-PAKVNIK 176 (873)
T ss_pred CCcceeeeeccchh-hhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCC-CCCCCce
Confidence 48999999998887 888986666677999999997 566664 3444899999999995 4777765532 2237899
Q ss_pred EEEecCCcCcceecCccC--CCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCC
Q 046441 101 ILEIWICCSLTYIAGVQL--PRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNE 178 (465)
Q Consensus 101 ~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 178 (465)
+|++.++ .++++..+.| +.+|..|.++. ..++.+ |...+.. +|+|+.|++.. +.++. ...-.
T Consensus 177 ~L~La~N-~It~l~~~~F~~lnsL~tlkLsr-NrittL--p~r~Fk~----------L~~L~~LdLnr-N~iri-ve~lt 240 (873)
T KOG4194|consen 177 KLNLASN-RITTLETGHFDSLNSLLTLKLSR-NRITTL--PQRSFKR----------LPKLESLDLNR-NRIRI-VEGLT 240 (873)
T ss_pred EEeeccc-cccccccccccccchheeeeccc-Cccccc--CHHHhhh----------cchhhhhhccc-cceee-ehhhh
Confidence 9999996 7888877633 46888899888 578887 7665542 78999999988 77765 32222
Q ss_pred cchhhhhcccCCCCCCccEEEecCCCChhhhhhh-hcCCCCCcEEeccccccccccccccccCccccEEecccCcccccC
Q 046441 179 LPATLESLEVGNLPPSLKVLDIYGCPKLESIAER-LDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESF 257 (465)
Q Consensus 179 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l 257 (465)
+ .++ ++|+.|.+..|. +..+.++ |..|.++++|++..|.....-..++.+++.|+.|++++| .+..+
T Consensus 241 F---------qgL-~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~ri 308 (873)
T KOG4194|consen 241 F---------QGL-PSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRI 308 (873)
T ss_pred h---------cCc-hhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh-hhhee
Confidence 2 455 789999999965 4444443 788999999999997655544567788999999999998 56655
Q ss_pred -CCCCCCCCCCceEEEecCCCcCcc-cccccCCCcccceeeccCCCCCccCC--CCCCCccceeeecCCccccccccccc
Q 046441 258 -PEGGLPCAKLSKLRIYGCERLEAL-PKGLHNLKSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWG 333 (465)
Q Consensus 258 -~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~ 333 (465)
+..+.-+++|++|+++.|. ++.+ +..+..++.|++|.++.| .+..+.. ...+++|++|+++.|.. .-.+...+
T Consensus 309 h~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~l-s~~IEDaa 385 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNEL-SWCIEDAA 385 (873)
T ss_pred ecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeE-EEEEecch
Confidence 4467778899999999986 4555 457778899999999998 4444433 24568999999999983 32232222
Q ss_pred ccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-cccCCCCcceEEecC
Q 046441 334 RGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGD 405 (465)
Q Consensus 334 ~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~ 405 (465)
..+.++++|+.|.+.|+ +++.++... +..++.|+.|++.+ +.+.++.. .|..+ .|++|.+..
T Consensus 386 ~~f~gl~~LrkL~l~gN--qlk~I~krA------fsgl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTGN--QLKSIPKRA------FSGLEALEHLDLGD-NAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhccchhhhheeecCc--eeeecchhh------hccCcccceecCCC-Ccceeecccccccc-hhhhhhhcc
Confidence 33778999999999997 888888744 34677999999999 78888754 55555 777776654
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=3.5e-24 Score=202.71 Aligned_cols=362 Identities=17% Similarity=0.190 Sum_probs=272.3
Q ss_pred cccceeecccCCCC-cccccccccCCCCcEEEecCCCCCCCCC-CCcCcCcccEEEccCCccccccccccccCCCCCccE
Q 046441 24 CRLEYLRLRYCEGL-VKLPQSSLSLSSLREIEICKCSSLVSFP-EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEI 101 (465)
Q Consensus 24 ~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 101 (465)
+-.|-+++++|+.- ..+|.....|.+++-|.+... .+..+| .++.+.+|++|.+.++. +.++...+ ...|.|+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGEL--s~Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLEQVPEELSRLQKLEHLSMAHNQ-LISVHGEL--SDLPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhh--ccchhhHH
Confidence 55677888888764 378888888899999999875 677788 56778899999998855 44444332 44588888
Q ss_pred EEecCCcCcce--ecCc-cCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCC
Q 046441 102 LEIWICCSLTY--IAGV-QLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNE 178 (465)
Q Consensus 102 L~l~~~~~l~~--~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 178 (465)
+.++.+ ++++ +|.. -.+.-|..|+++. +.++.+ |.++.. -+++-.|.+++ +++.. +|..-
T Consensus 83 v~~R~N-~LKnsGiP~diF~l~dLt~lDLSh-NqL~Ev--P~~LE~-----------AKn~iVLNLS~-N~Iet-IPn~l 145 (1255)
T KOG0444|consen 83 VIVRDN-NLKNSGIPTDIFRLKDLTILDLSH-NQLREV--PTNLEY-----------AKNSIVLNLSY-NNIET-IPNSL 145 (1255)
T ss_pred Hhhhcc-ccccCCCCchhcccccceeeecch-hhhhhc--chhhhh-----------hcCcEEEEccc-Ccccc-CCchH
Confidence 888876 5553 3333 2245667777776 567777 777665 46788888888 77766 44321
Q ss_pred cchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcc-cccC
Q 046441 179 LPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGN-LESF 257 (465)
Q Consensus 179 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~-l~~l 257 (465)
+ .++ +.|-.|++++|. ++.+|+.+.++..|++|++++|+..----.-+..+++|++|.+++... +..+
T Consensus 146 ----f-----inL-tDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~ 214 (1255)
T KOG0444|consen 146 ----F-----INL-TDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNI 214 (1255)
T ss_pred ----H-----Hhh-HhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcC
Confidence 1 222 567888999855 889999999999999999999764321112234467888888887643 3457
Q ss_pred CCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCC-CCCCCccceeeecCCcccccccccccccC
Q 046441 258 PEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGF 336 (465)
Q Consensus 258 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 336 (465)
|.+...+.+|+.++++.|. +..+|+.+..+++|+.|++++| .++.+.. .+...+|++|+++.|. ++..+.. +
T Consensus 215 Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~a----v 287 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPDA----V 287 (1255)
T ss_pred CCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchHH----H
Confidence 7777778899999999875 7888999999999999999998 4555443 3667899999999998 5544444 5
Q ss_pred CCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCC-C
Q 046441 337 HRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPE-K 415 (465)
Q Consensus 337 ~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~ 415 (465)
..+++|+.|.+.++.-.++.+|.+.+ .+.+|+.+...+ ++++-+|.++..|+.|+.|.+.+ +++..+|. .
T Consensus 288 cKL~kL~kLy~n~NkL~FeGiPSGIG-------KL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaI 358 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKLTFEGIPSGIG-------KLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAI 358 (1255)
T ss_pred hhhHHHHHHHhccCcccccCCccchh-------hhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhh
Confidence 68899999999988556777887663 667888888888 89999999999999999999987 77888887 4
Q ss_pred CCcccccEEeecCCchHH
Q 046441 416 GLPSSLLRLYIDECPLIA 433 (465)
Q Consensus 416 ~~~~~L~~L~l~~c~~l~ 433 (465)
.+++-|++||+..+|+|.
T Consensus 359 HlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhcCCcceeeccCCcCcc
Confidence 568999999999998764
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=3.9e-23 Score=203.82 Aligned_cols=367 Identities=23% Similarity=0.283 Sum_probs=221.3
Q ss_pred hhhcccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCC-CCcCcCcccEEEccCCccccccccccccCCCC
Q 046441 19 LCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP-EVALPSKLKKIRISSCDALKSLPEAWMCDTNS 97 (465)
Q Consensus 19 l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 97 (465)
++++++ |+.|++++|.. ..+|..+..+++|+.|+++.+ .+..+| ..+.+.+|+++.|.+ ..+...|..+. ...
T Consensus 41 ~~~~v~-L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~--~lk 114 (1081)
T KOG0618|consen 41 VEKRVK-LKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASIS--ELK 114 (1081)
T ss_pred hhheee-eEEeecccccc-ccCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheecc-chhhcCchhHH--hhh
Confidence 444556 88888888876 677776777777777777765 556666 344467777777765 34566665521 235
Q ss_pred CccEEEecCCcCcceecCc-cC-----------------C-----------------------CCccE-EeeccccCccc
Q 046441 98 SLEILEIWICCSLTYIAGV-QL-----------------P-----------------------RSLKR-LHILLCNNIRT 135 (465)
Q Consensus 98 ~L~~L~l~~~~~l~~~~~~-~~-----------------~-----------------------~~L~~-L~l~~c~~l~~ 135 (465)
+|+.|+++++ .+..+|.. .. + ..++. +++.+. .+..
T Consensus 115 nl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N-~~~~ 192 (1081)
T KOG0618|consen 115 NLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYN-EMEV 192 (1081)
T ss_pred cccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccc-hhhh
Confidence 5666666664 33333211 00 0 01111 222221 1111
Q ss_pred cccccccccCCCCCCchhhhcccCCee----------eccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCC
Q 046441 136 LTVEEGIQCSNSSSSSRRYISSLLEHL----------EIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPK 205 (465)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~L~~L----------~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~ 205 (465)
+ .. -++++|+.+ .+.+ ..++. +....-+-. .......|.+|++++++.+ .
T Consensus 193 ~--dl-------------s~~~~l~~l~c~rn~ls~l~~~g-~~l~~-L~a~~n~l~--~~~~~p~p~nl~~~dis~n-~ 252 (1081)
T KOG0618|consen 193 L--DL-------------SNLANLEVLHCERNQLSELEISG-PSLTA-LYADHNPLT--TLDVHPVPLNLQYLDISHN-N 252 (1081)
T ss_pred h--hh-------------hhccchhhhhhhhcccceEEecC-cchhe-eeeccCcce--eeccccccccceeeecchh-h
Confidence 1 00 002222222 2222 22222 111111111 1111456689999999995 4
Q ss_pred hhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccc
Q 046441 206 LESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGL 285 (465)
Q Consensus 206 l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 285 (465)
+..+|.+++.+.+|+.++..+|.. ..+|..+...++|+.|.+.+| .++.+|....+..+|++|++..|. +..+|+.+
T Consensus 253 l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~-L~~lp~~~ 329 (1081)
T KOG0618|consen 253 LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNF 329 (1081)
T ss_pred hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhcc-ccccchHH
Confidence 788999999999999999999665 567888888899999999998 789999988888899999999975 66676533
Q ss_pred cC-C-CcccceeeccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCccccccccc
Q 046441 286 HN-L-KSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLED 361 (465)
Q Consensus 286 ~~-l-~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~ 361 (465)
-. . .+|+.|+.+.+ .+...+. ....+.|+.|.+.+|. +++..... +.++.+|+.|+++++ .+..||...
T Consensus 330 l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~LylanN~-Ltd~c~p~---l~~~~hLKVLhLsyN--rL~~fpas~ 402 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQELYLANNH-LTDSCFPV---LVNFKHLKVLHLSYN--RLNSFPASK 402 (1081)
T ss_pred HhhhhHHHHHHhhhhc-cccccccccchhhHHHHHHHHhcCc-ccccchhh---hccccceeeeeeccc--ccccCCHHH
Confidence 21 2 23666666655 3334433 2345678888888887 44333333 567888888888886 777777754
Q ss_pred ccccCCCCCccccceEeccCCCCCccccccccC----------------------CCCcceEEecCCCCCCcCCC-CCCc
Q 046441 362 KRLGTALPLPACLASLMIGNFPNLERLSSSIVD----------------------LQNLTELYLGDCPKLKYFPE-KGLP 418 (465)
Q Consensus 362 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~----------------------l~~L~~L~l~~c~~l~~l~~-~~~~ 418 (465)
+..++.|++|++++ |+|+.+|..+.+ +++|+.+|++. ++++.+.. ...+
T Consensus 403 ------~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 403 ------LRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALP 474 (1081)
T ss_pred ------HhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEeccc-chhhhhhhhhhCC
Confidence 23566777777777 677777654444 45555555554 45555322 2234
Q ss_pred -ccccEEeecCCch
Q 046441 419 -SSLLRLYIDECPL 431 (465)
Q Consensus 419 -~~L~~L~l~~c~~ 431 (465)
++|++||++|++.
T Consensus 475 ~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTR 488 (1081)
T ss_pred CcccceeeccCCcc
Confidence 6666666666654
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=3.9e-21 Score=182.25 Aligned_cols=318 Identities=20% Similarity=0.266 Sum_probs=203.4
Q ss_pred cccceeecccCCCCcccccccccCCCCcEEEecCCC-CCCCCC-CCcCcCcccEEEccCCccccccccccccCCCCCccE
Q 046441 24 CRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCS-SLVSFP-EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEI 101 (465)
Q Consensus 24 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~-~l~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 101 (465)
++|++|.++.|.. ..+...++.+|.||.+.+..|. .-..+| .+..+.-|..|+++++ .++..|..+- ...++-.
T Consensus 55 qkLEHLs~~HN~L-~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE--~AKn~iV 130 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQL-ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLE--YAKNSIV 130 (1255)
T ss_pred hhhhhhhhhhhhh-HhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhh--hhcCcEE
Confidence 6677777776665 4444556667777777776652 122344 4445677777777773 4676666632 1266777
Q ss_pred EEecCCcCcceecCccC--CCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCc
Q 046441 102 LEIWICCSLTYIAGVQL--PRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNEL 179 (465)
Q Consensus 102 L~l~~~~~l~~~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 179 (465)
|+++++ ++..+|...+ ++-|-.|++++ +.+..+ |+.+.+ +.+|++|.+++ +-+.. +.-..+
T Consensus 131 LNLS~N-~IetIPn~lfinLtDLLfLDLS~-NrLe~L--PPQ~RR-----------L~~LqtL~Ls~-NPL~h-fQLrQL 193 (1255)
T KOG0444|consen 131 LNLSYN-NIETIPNSLFINLTDLLFLDLSN-NRLEML--PPQIRR-----------LSMLQTLKLSN-NPLNH-FQLRQL 193 (1255)
T ss_pred EEcccC-ccccCCchHHHhhHhHhhhcccc-chhhhc--CHHHHH-----------HhhhhhhhcCC-ChhhH-HHHhcC
Confidence 777775 6777776533 34445566666 456666 776666 56677777777 43333 222222
Q ss_pred chhhhhcccCCCCCCccEEEecCCC-ChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCC
Q 046441 180 PATLESLEVGNLPPSLKVLDIYGCP-KLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFP 258 (465)
Q Consensus 180 ~~~~~~l~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~ 258 (465)
..+ ++|++|++++.. .+..+|..+..+.+|..+|++.|+ +..+|+.+.++++|+.|++++| .++.+.
T Consensus 194 ---------Psm-tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N-~iteL~ 261 (1255)
T KOG0444|consen 194 ---------PSM-TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGN-KITELN 261 (1255)
T ss_pred ---------ccc-hhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcC-ceeeee
Confidence 223 567777777633 245677777888888888888743 4446777888888888888887 667666
Q ss_pred CCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCC-CCCccCC-CCCCCccceeeecCCcccccccccccccC
Q 046441 259 EGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGV-ELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGF 336 (465)
Q Consensus 259 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 336 (465)
.....+.+|++|+++.|. ++.+|..+..+++|+.|.+.+|. ..+.+|+ +|.+.+|+.+...+|. +.-.+ . .+
T Consensus 262 ~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVP-E---gl 335 (1255)
T KOG0444|consen 262 MTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVP-E---GL 335 (1255)
T ss_pred ccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCc-h---hh
Confidence 655555578888888865 77788878888888888877764 3334444 4666777777777765 22222 2 26
Q ss_pred CCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCcccc
Q 046441 337 HRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLS 389 (465)
Q Consensus 337 ~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 389 (465)
.+|..|+.|.+..+ .+-.+|... +.++.|+.||+...+++---|
T Consensus 336 cRC~kL~kL~L~~N--rLiTLPeaI-------HlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHN--RLITLPEAI-------HLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhHHHHHhccccc--ceeechhhh-------hhcCCcceeeccCCcCccCCC
Confidence 67777777777775 666666554 466777777777766655443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=1.1e-21 Score=176.79 Aligned_cols=363 Identities=21% Similarity=0.228 Sum_probs=193.1
Q ss_pred cccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEEE
Q 046441 24 CRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILE 103 (465)
Q Consensus 24 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 103 (465)
..++.++++.+.. ..+|..+++.+.|++++.+++...+-.+.++.+..|+.++..++ .+.++|.++.. +.+|..|+
T Consensus 91 ~~l~~l~vs~n~l-s~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~--~~~l~~l~ 166 (565)
T KOG0472|consen 91 EALKSLNVSHNKL-SELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVN--LSKLSKLD 166 (565)
T ss_pred HHHHHhhcccchH-hhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHH--HHHHHHhh
Confidence 4566666766665 66676677777777777776633322235555666666666553 35666655322 24555555
Q ss_pred ecCCcCcceecCc-cCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcch-
Q 046441 104 IWICCSLTYIAGV-QLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPA- 181 (465)
Q Consensus 104 l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~- 181 (465)
+.++ .++..+.. ..+++|++++... .-++.+ |+++.. +.+|+.|++.+ +.+.. .| ++++
T Consensus 167 ~~~n-~l~~l~~~~i~m~~L~~ld~~~-N~L~tl--P~~lg~-----------l~~L~~LyL~~-Nki~~-lP--ef~gc 227 (565)
T KOG0472|consen 167 LEGN-KLKALPENHIAMKRLKHLDCNS-NLLETL--PPELGG-----------LESLELLYLRR-NKIRF-LP--EFPGC 227 (565)
T ss_pred cccc-chhhCCHHHHHHHHHHhcccch-hhhhcC--Chhhcc-----------hhhhHHHHhhh-ccccc-CC--CCCcc
Confidence 5554 44444433 2244555555433 234444 555544 33444444444 33332 22 1111
Q ss_pred -hhhhccc-------------CCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEe
Q 046441 182 -TLESLEV-------------GNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEIS 247 (465)
Q Consensus 182 -~~~~l~~-------------~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~ 247 (465)
.+.+++. ..+ +++..||+++|. ++++|.++..+.+|+.||+++|. +..+|.+++++ .|+.|.
T Consensus 228 s~L~Elh~g~N~i~~lpae~~~~L-~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 228 SLLKELHVGENQIEMLPAEHLKHL-NSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLA 303 (565)
T ss_pred HHHHHHHhcccHHHhhHHHHhccc-ccceeeeccccc-cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehh
Confidence 0111110 234 778889999854 88888888888899999999854 45588888888 888888
Q ss_pred cccCcccc------------------c-------------------CCC----CCCCCCCCceEEEecCCCcCccccccc
Q 046441 248 IEKCGNLE------------------S-------------------FPE----GGLPCAKLSKLRIYGCERLEALPKGLH 286 (465)
Q Consensus 248 l~~~~~l~------------------~-------------------l~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~ 286 (465)
+.+|+.-+ + .+. ......+.+.|++++- .++.+|..+.
T Consensus 304 leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVf 382 (565)
T KOG0472|consen 304 LEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVF 382 (565)
T ss_pred hcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHH
Confidence 88774110 0 000 0111224555666552 3444554221
Q ss_pred CC---CcccceeeccCC-----------------------CCCccCC-CCCCCccceeeecCCcccccccccccccCCCC
Q 046441 287 NL---KSLQELRIGRGV-----------------------ELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRF 339 (465)
Q Consensus 287 ~l---~~L~~L~l~~~~-----------------------~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 339 (465)
.. .-...+++++|. .+..++. ...+++|..|++++|. +.+.+.. +..+
T Consensus 383 ea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e----~~~l 457 (565)
T KOG0472|consen 383 EAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEE----MGSL 457 (565)
T ss_pred HHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchh----hhhh
Confidence 11 113444455442 1111211 1334566666666665 3333333 3345
Q ss_pred CCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-cccCCCCcceEEecCCCCCCcCCC-CCC
Q 046441 340 SSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGDCPKLKYFPE-KGL 417 (465)
Q Consensus 340 ~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~-~~~ 417 (465)
..|+.|+++.+ .+..+|... ..+..++.+-.++ +++..++. ++.++.+|.+|++.+ +.+..+|. .+-
T Consensus 458 v~Lq~LnlS~N--rFr~lP~~~-------y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~Lgn 526 (565)
T KOG0472|consen 458 VRLQTLNLSFN--RFRMLPECL-------YELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGN 526 (565)
T ss_pred hhhheeccccc--ccccchHHH-------hhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC-CchhhCChhhcc
Confidence 55666666665 444444422 1233344443343 55555555 366677777777777 56666666 233
Q ss_pred cccccEEeecCCc
Q 046441 418 PSSLLRLYIDECP 430 (465)
Q Consensus 418 ~~~L~~L~l~~c~ 430 (465)
+.+|++|++.++|
T Consensus 527 mtnL~hLeL~gNp 539 (565)
T KOG0472|consen 527 MTNLRHLELDGNP 539 (565)
T ss_pred ccceeEEEecCCc
Confidence 6777777777664
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=4e-21 Score=173.14 Aligned_cols=240 Identities=23% Similarity=0.280 Sum_probs=138.7
Q ss_pred cccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCC-CCcCcCcccEEEccCCccccccccccccCCCCCccEE
Q 046441 24 CRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP-EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEIL 102 (465)
Q Consensus 24 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 102 (465)
.-++.+.++.|.. +.+..-+.++..|..|++.++. +..+| ++|.+.+++.++.+.+ ++..+|...+ ..++|.+|
T Consensus 45 v~l~~lils~N~l-~~l~~dl~nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~--s~~~l~~l 119 (565)
T KOG0472|consen 45 VDLQKLILSHNDL-EVLREDLKNLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHN-KLSELPEQIG--SLISLVKL 119 (565)
T ss_pred cchhhhhhccCch-hhccHhhhcccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccc-hHhhccHHHh--hhhhhhhh
Confidence 4577777777776 4444446677888888888874 44444 6777888888888774 4666666632 34677777
Q ss_pred EecCCcCcceecCc-cCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcch
Q 046441 103 EIWICCSLTYIAGV-QLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPA 181 (465)
Q Consensus 103 ~l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 181 (465)
+++.+ .++..+.. +.+..++.++-++ .++..+ |+++.. +.++..+++.+ +.++. .+...+.
T Consensus 120 ~~s~n-~~~el~~~i~~~~~l~dl~~~~-N~i~sl--p~~~~~-----------~~~l~~l~~~~-n~l~~-l~~~~i~- 181 (565)
T KOG0472|consen 120 DCSSN-ELKELPDSIGRLLDLEDLDATN-NQISSL--PEDMVN-----------LSKLSKLDLEG-NKLKA-LPENHIA- 181 (565)
T ss_pred hcccc-ceeecCchHHHHhhhhhhhccc-cccccC--chHHHH-----------HHHHHHhhccc-cchhh-CCHHHHH-
Confidence 77775 44444443 4455666666555 456666 666654 44555555555 45544 3322221
Q ss_pred hhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccc---------------------ccccccccc-cc
Q 046441 182 TLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCE---------------------NLKILPSGL-HN 239 (465)
Q Consensus 182 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~---------------------~~~~l~~~~-~~ 239 (465)
+ +.|++++...| .++.+|+.++.+.+|+-|++.+|. .++.+|+.. .+
T Consensus 182 ---------m-~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~ 250 (565)
T KOG0472|consen 182 ---------M-KRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKH 250 (565)
T ss_pred ---------H-HHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcc
Confidence 1 33444444442 244555555555555555555432 222333322 24
Q ss_pred CccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCC
Q 046441 240 LRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGV 300 (465)
Q Consensus 240 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 300 (465)
++++..|++.+| .+++.|..+..+.+|..|++++|+ +..+|..++++ .|+.|.+.||+
T Consensus 251 L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 251 LNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccceeeecccc-ccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 566666666665 566666666556666666666654 55666666666 66666666663
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.70 E-value=3.1e-19 Score=176.63 Aligned_cols=334 Identities=20% Similarity=0.209 Sum_probs=199.4
Q ss_pred ccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCC-CcCcCcccEEEccCCccccccccc-----------
Q 046441 23 SCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-VALPSKLKKIRISSCDALKSLPEA----------- 90 (465)
Q Consensus 23 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~----------- 90 (465)
..+|+++.|.++.. ..+|..+..+.+|++|+++++ .+..+|. +..+..++.+..+++-++..++..
T Consensus 90 ~~~l~~lnL~~n~l-~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~ 167 (1081)
T KOG0618|consen 90 MRNLQYLNLKNNRL-QSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNV 167 (1081)
T ss_pred hhcchhheeccchh-hcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhh
Confidence 38889999988776 888988888999999999987 4455552 222333333333332111111100
Q ss_pred ---cccCCCCCccE-EEecCCcCcceecCccCC--------------------CCccEEeeccccCccccccccccccCC
Q 046441 91 ---WMCDTNSSLEI-LEIWICCSLTYIAGVQLP--------------------RSLKRLHILLCNNIRTLTVEEGIQCSN 146 (465)
Q Consensus 91 ---~~~~~~~~L~~-L~l~~~~~l~~~~~~~~~--------------------~~L~~L~l~~c~~l~~~~~~~~~~~~~ 146 (465)
.+..+...|+. |+++++. +. ......+ ++++.|....|+-.+..
T Consensus 168 l~~~~~~~i~~l~~~ldLr~N~-~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~---------- 235 (1081)
T KOG0618|consen 168 LGGSFLIDIYNLTHQLDLRYNE-ME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD---------- 235 (1081)
T ss_pred cccchhcchhhhheeeecccch-hh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec----------
Confidence 00011123444 5555542 22 1111111 23333333332211110
Q ss_pred CCCCchhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccc
Q 046441 147 SSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILC 226 (465)
Q Consensus 147 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 226 (465)
.-+.-.+|+.++++. +++.. +|.|+. .. .+|+.++..+|. +..+|..+....+|+.|++..
T Consensus 236 -----~~p~p~nl~~~dis~-n~l~~------lp~wi~-----~~-~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 236 -----VHPVPLNLQYLDISH-NNLSN------LPEWIG-----AC-ANLEALNANHNR-LVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred -----cccccccceeeecch-hhhhc------chHHHH-----hc-ccceEecccchh-HHhhHHHHhhhhhHHHHHhhh
Confidence 001124567777776 44443 334443 33 678999998854 678888888888888888888
Q ss_pred cccccccccccccCccccEEecccCcccccCCCCC--------------------------CCCCCCceEEEecCCCcCc
Q 046441 227 CENLKILPSGLHNLRQLQEISIEKCGNLESFPEGG--------------------------LPCAKLSKLRIYGCERLEA 280 (465)
Q Consensus 227 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~--------------------------~~~~~L~~L~l~~~~~~~~ 280 (465)
|. +..+|+.....+.|++|++..| ++..+|... ...+.|+.|++.+|..-..
T Consensus 297 ne-l~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 297 NE-LEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hh-hhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence 54 4446777777888888888887 555554411 1123455555555543333
Q ss_pred ccccccCCCcccceeeccCCCCCccCCC--CCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccc
Q 046441 281 LPKGLHNLKSLQELRIGRGVELPSLEED--GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFP 358 (465)
Q Consensus 281 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~ 358 (465)
.-+.+..+..|+.|++++| .+..+|.. ..++.|++|+++||. ++..... +..++.|++|...++ .+..+|
T Consensus 375 c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~t----va~~~~L~tL~ahsN--~l~~fP 446 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNK-LTTLPDT----VANLGRLHTLRAHSN--QLLSFP 446 (1081)
T ss_pred chhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccch-hhhhhHH----HHhhhhhHHHhhcCC--ceeech
Confidence 3234566778888888887 46666653 456778888888887 4444443 456778888877776 788888
Q ss_pred cccccccCCCCCccccceEeccCCCCCccccccccCC-CCcceEEecCCCC
Q 046441 359 LEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDL-QNLTELYLGDCPK 408 (465)
Q Consensus 359 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l-~~L~~L~l~~c~~ 408 (465)
... .++.|+.+|++. |+|+.+-....-- ++|++|+++++..
T Consensus 447 e~~--------~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 ELA--------QLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhh--------hcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 544 778999999998 8888763312111 8999999999664
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=2e-14 Score=146.47 Aligned_cols=257 Identities=27% Similarity=0.319 Sum_probs=157.5
Q ss_pred cccEEEccCCccccccccccccCCCCCccEEEecCCcCcceecCccCCCCccEEeeccccCccccccccccccCCCCCCc
Q 046441 72 KLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSS 151 (465)
Q Consensus 72 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 151 (465)
+-..|+++++ .++.+|..+. ++|+.|++.++ .++.+|. .+++|+.|+++++ +++.+ |..
T Consensus 202 ~~~~LdLs~~-~LtsLP~~l~----~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N-~LtsL--P~l---------- 260 (788)
T PRK15387 202 GNAVLNVGES-GLTTLPDCLP----AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGN-QLTSL--PVL---------- 260 (788)
T ss_pred CCcEEEcCCC-CCCcCCcchh----cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCC-ccCcc--cCc----------
Confidence 3456666664 4666665421 45777777764 5666653 3567777777663 56555 431
Q ss_pred hhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEecccccccc
Q 046441 152 RRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLK 231 (465)
Q Consensus 152 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~ 231 (465)
.++|+.|++.+ +.+.. ++ .+|++|+.|++.+|. +..+|. ..++|+.|++++|.. .
T Consensus 261 ----p~sL~~L~Ls~-N~L~~-Lp--------------~lp~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~L-~ 315 (788)
T PRK15387 261 ----PPGLLELSIFS-NPLTH-LP--------------ALPSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQL-A 315 (788)
T ss_pred ----ccccceeeccC-Cchhh-hh--------------hchhhcCEEECcCCc-cccccc---cccccceeECCCCcc-c
Confidence 24577777766 44444 22 123567777777754 555554 245677777777643 3
Q ss_pred ccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCC
Q 046441 232 ILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLP 311 (465)
Q Consensus 232 ~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 311 (465)
.+|.. ..+|+.|++++| .++.+|.. ..+|+.|++++|. +..+|.. .++|+.|++++| .+..+|. .+
T Consensus 316 ~Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N-~L~~LP~--l~ 381 (788)
T PRK15387 316 SLPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNN-RLTSLPA--LP 381 (788)
T ss_pred cCCCC---cccccccccccC-cccccccc---ccccceEecCCCc-cCCCCCC---Ccccceehhhcc-ccccCcc--cc
Confidence 34432 235677777776 55666542 2367888887764 5556542 245667777766 3444543 23
Q ss_pred CccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCcccccc
Q 046441 312 TNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSS 391 (465)
Q Consensus 312 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 391 (465)
.+|+.|++++|. +...+. ..++|+.|++++| .+..+|. .+.+|+.|++.+ ++++.+|..
T Consensus 382 ~~L~~LdLs~N~-Lt~LP~-------l~s~L~~LdLS~N--~LssIP~----------l~~~L~~L~Ls~-NqLt~LP~s 440 (788)
T PRK15387 382 SGLKELIVSGNR-LTSLPV-------LPSELKELMVSGN--RLTSLPM----------LPSGLLSLSVYR-NQLTRLPES 440 (788)
T ss_pred cccceEEecCCc-ccCCCC-------cccCCCEEEccCC--cCCCCCc----------chhhhhhhhhcc-CcccccChH
Confidence 578888888776 332221 1357888888886 5666664 335778888887 688888877
Q ss_pred ccCCCCcceEEecCCCCCC
Q 046441 392 IVDLQNLTELYLGDCPKLK 410 (465)
Q Consensus 392 ~~~l~~L~~L~l~~c~~l~ 410 (465)
+..+++|+.|+++++ .+.
T Consensus 441 l~~L~~L~~LdLs~N-~Ls 458 (788)
T PRK15387 441 LIHLSSETTVNLEGN-PLS 458 (788)
T ss_pred HhhccCCCeEECCCC-CCC
Confidence 778888888888884 444
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=5e-14 Score=143.68 Aligned_cols=256 Identities=30% Similarity=0.376 Sum_probs=189.9
Q ss_pred CCccEEEecCCcCcceecCccCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccC
Q 046441 97 SSLEILEIWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSK 176 (465)
Q Consensus 97 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 176 (465)
..-..|+++++ .++.+|. ..+++|+.|.+.+ .+++.+ |.. .++|++|++++ ++++. ++.
T Consensus 201 ~~~~~LdLs~~-~LtsLP~-~l~~~L~~L~L~~-N~Lt~L--P~l--------------p~~Lk~LdLs~-N~Lts-LP~ 259 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPD-CLPAHITTLVIPD-NNLTSL--PAL--------------PPELRTLEVSG-NQLTS-LPV 259 (788)
T ss_pred CCCcEEEcCCC-CCCcCCc-chhcCCCEEEccC-CcCCCC--CCC--------------CCCCcEEEecC-CccCc-ccC
Confidence 44667888887 7777775 3456899999988 567776 642 36799999998 67776 332
Q ss_pred CCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCccccc
Q 046441 177 NELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLES 256 (465)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 256 (465)
.|++|+.|++.+|. +..+|.. ..+|+.|++++|. +..+|.. .++|+.|++++| .+..
T Consensus 260 --------------lp~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~ 316 (788)
T PRK15387 260 --------------LPPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLAS 316 (788)
T ss_pred --------------cccccceeeccCCc-hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCC-cccc
Confidence 24789999999965 6666653 3578899999964 4456653 478999999998 6777
Q ss_pred CCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccC
Q 046441 257 FPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGF 336 (465)
Q Consensus 257 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 336 (465)
+|.. .++|+.|++++|. +..+|.. ..+|+.|++++| .+..+|. .+++|+.|++++|. +...+ .
T Consensus 317 Lp~l---p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~--lp~~L~~L~Ls~N~-L~~LP-~----- 379 (788)
T PRK15387 317 LPAL---PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDN-QLASLPT--LPSELYKLWAYNNR-LTSLP-A----- 379 (788)
T ss_pred CCCC---cccccccccccCc-ccccccc---ccccceEecCCC-ccCCCCC--CCcccceehhhccc-cccCc-c-----
Confidence 7653 2378999999875 5566642 247999999997 5666664 35789999999887 33322 1
Q ss_pred CCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCCCC
Q 046441 337 HRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPEKG 416 (465)
Q Consensus 337 ~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 416 (465)
...+|+.|++++| .+..+|. .+++|+.|++++ +.++.+|.. ..+|+.|++++ +.++.+|...
T Consensus 380 -l~~~L~~LdLs~N--~Lt~LP~----------l~s~L~~LdLS~-N~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl 441 (788)
T PRK15387 380 -LPSGLKELIVSGN--RLTSLPV----------LPSELKELMVSG-NRLTSLPML---PSGLLSLSVYR-NQLTRLPESL 441 (788)
T ss_pred -cccccceEEecCC--cccCCCC----------cccCCCEEEccC-CcCCCCCcc---hhhhhhhhhcc-CcccccChHH
Confidence 2357999999997 6777775 346899999999 689998853 35788999999 7899998742
Q ss_pred -CcccccEEeecCCch
Q 046441 417 -LPSSLLRLYIDECPL 431 (465)
Q Consensus 417 -~~~~L~~L~l~~c~~ 431 (465)
.+++|+.|++++++-
T Consensus 442 ~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 442 IHLSSETTVNLEGNPL 457 (788)
T ss_pred hhccCCCeEECCCCCC
Confidence 368999999999853
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=1.3e-13 Score=141.38 Aligned_cols=242 Identities=23% Similarity=0.355 Sum_probs=107.8
Q ss_pred CccEEEecCCcCcceecCccCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCC
Q 046441 98 SLEILEIWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKN 177 (465)
Q Consensus 98 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 177 (465)
+...|++++. .++.+|.. .++.++.|+++++ +++.+ |..+. ++|+.|++++ +.++. ++.
T Consensus 179 ~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N-~LtsL--P~~l~-------------~nL~~L~Ls~-N~Lts-LP~- 237 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPAC-IPEQITTLILDNN-ELKSL--PENLQ-------------GNIKTLYANS-NQLTS-IPA- 237 (754)
T ss_pred CceEEEeCCC-CcCcCCcc-cccCCcEEEecCC-CCCcC--Chhhc-------------cCCCEEECCC-Ccccc-CCh-
Confidence 3455555554 44444432 2345566666553 45544 43321 3456666655 34443 221
Q ss_pred CcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccC
Q 046441 178 ELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESF 257 (465)
Q Consensus 178 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l 257 (465)
.+|++|+.|++++|. +..+|..+. .+|+.|++++|. +..+|..+. ++|+.|++++| .++.+
T Consensus 238 ------------~l~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~L 298 (754)
T PRK15370 238 ------------TLPDTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTL 298 (754)
T ss_pred ------------hhhccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccC
Confidence 122455666666543 334444332 355556655432 233444332 35555555555 44444
Q ss_pred CCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCC
Q 046441 258 PEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFH 337 (465)
Q Consensus 258 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 337 (465)
|.... ++|+.|++++|. +..+|..+ .++|+.|++++|. +..++. ..+++|+.|++++|. +...+...
T Consensus 299 P~~lp--~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N~-Lt~LP~-~l~~sL~~L~Ls~N~-L~~LP~~l----- 365 (754)
T PRK15370 299 PAHLP--SGITHLNVQSNS-LTALPETL--PPGLKTLEAGENA-LTSLPA-SLPPELQVLDVSKNQ-ITVLPETL----- 365 (754)
T ss_pred cccch--hhHHHHHhcCCc-cccCCccc--cccceeccccCCc-cccCCh-hhcCcccEEECCCCC-CCcCChhh-----
Confidence 43221 245555555543 33343322 1355555555542 333332 223455555555554 22211111
Q ss_pred CCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCcccccccc----CCCCcceEEecC
Q 046441 338 RFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIV----DLQNLTELYLGD 405 (465)
Q Consensus 338 ~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~----~l~~L~~L~l~~ 405 (465)
.++|+.|++++| .+..+|... +..|+.|++++ ++++.+|..+. .++.+..|++.+
T Consensus 366 -p~~L~~LdLs~N--~Lt~LP~~l---------~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 366 -PPTITTLDVSRN--ALTNLPENL---------PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred -cCCcCEEECCCC--cCCCCCHhH---------HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeC
Confidence 235555555554 344444321 22455555555 35554443222 224455555555
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=2.9e-13 Score=138.92 Aligned_cols=245 Identities=21% Similarity=0.330 Sum_probs=177.9
Q ss_pred CCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEE
Q 046441 120 RSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLD 199 (465)
Q Consensus 120 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~ 199 (465)
.+...|++.+. +++.+ |..+. ++|+.|++++ +.++. ++. . ++++|+.|+
T Consensus 178 ~~~~~L~L~~~-~LtsL--P~~Ip-------------~~L~~L~Ls~-N~Lts-LP~------------~-l~~nL~~L~ 226 (754)
T PRK15370 178 NNKTELRLKIL-GLTTI--PACIP-------------EQITTLILDN-NELKS-LPE------------N-LQGNIKTLY 226 (754)
T ss_pred cCceEEEeCCC-CcCcC--Ccccc-------------cCCcEEEecC-CCCCc-CCh------------h-hccCCCEEE
Confidence 35667777773 56666 65443 4689999988 67776 443 1 226899999
Q ss_pred ecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcC
Q 046441 200 IYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLE 279 (465)
Q Consensus 200 l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~ 279 (465)
+.+|. +..+|..+. .+|+.|++++|... .+|..+. ++|+.|++++| .++.+|.... ++|+.|++++|. +.
T Consensus 227 Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~-Lt 296 (754)
T PRK15370 227 ANSNQ-LTSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNS-IR 296 (754)
T ss_pred CCCCc-cccCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCc-cc
Confidence 99865 677776553 47999999997644 5776554 58999999987 7777876543 489999999984 66
Q ss_pred cccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCccccccc
Q 046441 280 ALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPL 359 (465)
Q Consensus 280 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~ 359 (465)
.+|..+. ++|+.|++++| .+..+|. ..+++|++|++++|. +...+.. -.++|+.|++++| .+..+|.
T Consensus 297 ~LP~~lp--~sL~~L~Ls~N-~Lt~LP~-~l~~sL~~L~Ls~N~-Lt~LP~~------l~~sL~~L~Ls~N--~L~~LP~ 363 (754)
T PRK15370 297 TLPAHLP--SGITHLNVQSN-SLTALPE-TLPPGLKTLEAGENA-LTSLPAS------LPPELQVLDVSKN--QITVLPE 363 (754)
T ss_pred cCcccch--hhHHHHHhcCC-ccccCCc-cccccceeccccCCc-cccCChh------hcCcccEEECCCC--CCCcCCh
Confidence 6775443 47999999987 4555553 345789999999987 4433322 2379999999997 6776765
Q ss_pred ccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCCC-----CCcccccEEeecCCch
Q 046441 360 EDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPEK-----GLPSSLLRLYIDECPL 431 (465)
Q Consensus 360 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~l~~c~~ 431 (465)
. .+++|++|++++ ++++.+|..+. ..|+.|++++ +++..+|.. ...+.+..|++.+++-
T Consensus 364 ~---------lp~~L~~LdLs~-N~Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 364 T---------LPPTITTLDVSR-NALTNLPENLP--AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred h---------hcCCcCEEECCC-CcCCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 2 346899999999 58999987554 4799999999 678887762 1247889999998864
No 17
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.42 E-value=2.8e-15 Score=136.55 Aligned_cols=235 Identities=17% Similarity=0.284 Sum_probs=128.2
Q ss_pred cccceeecccCCCCc--ccccccccCCCCcEEEecCCCCCCCCC--CCc-CcCcccEEEccCCccccccccccccCCCCC
Q 046441 24 CRLEYLRLRYCEGLV--KLPQSSLSLSSLREIEICKCSSLVSFP--EVA-LPSKLKKIRISSCDALKSLPEAWMCDTNSS 98 (465)
Q Consensus 24 ~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~~~~l~~~~--~~~-~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 98 (465)
..||.|++.|+.... .+-....++|++++|.+.+|.++++.. .++ .|++|++|++..|..+++......+.++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 567888888887654 333345578888888888887766543 222 288888888888888887776666678888
Q ss_pred ccEEEecCCcCcceecCc---cCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCcccccc
Q 046441 99 LEILEIWICCSLTYIAGV---QLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFS 175 (465)
Q Consensus 99 L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 175 (465)
|+++++++|+.++.-... .....++.+...||...+. +.+...... ++-+.++++..|+.+++ ..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l----e~l~~~~~~-------~~~i~~lnl~~c~~lTD-~~ 285 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL----EALLKAAAY-------CLEILKLNLQHCNQLTD-ED 285 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH----HHHHHHhcc-------ChHhhccchhhhccccc-hH
Confidence 888888888776652111 1122345555555644331 111111111 23344555556655554 22
Q ss_pred CCCcchhhhhcccCCCCCCccEEEecCCCChhhhhh--hhcCCCCCcEEeccccccccccc-ccc-ccCccccEEecccC
Q 046441 176 KNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAE--RLDNNTSLETISILCCENLKILP-SGL-HNLRQLQEISIEKC 251 (465)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~l~-~~~-~~~~~L~~L~l~~~ 251 (465)
...+ ......|+.++.++|..+++.+- --.++++|+.|.+..|...+... ..+ .+++.|+.+++..|
T Consensus 286 ~~~i---------~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 286 LWLI---------ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred HHHH---------hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 1000 11124566666666665543322 13455666666666665443321 111 23455666666655
Q ss_pred cccccC--CCCCCCCCCCceEEEecCCCcC
Q 046441 252 GNLESF--PEGGLPCAKLSKLRIYGCERLE 279 (465)
Q Consensus 252 ~~l~~l--~~~~~~~~~L~~L~l~~~~~~~ 279 (465)
..+... ....-.++.|+++.+++|..++
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~it 386 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELIT 386 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhh
Confidence 333322 2223334555555555554433
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.25 E-value=2e-13 Score=123.70 Aligned_cols=248 Identities=18% Similarity=0.178 Sum_probs=124.7
Q ss_pred cccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhh-hcCCCCCcEEeccccccccccc
Q 046441 156 SSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAER-LDNNTSLETISILCCENLKILP 234 (465)
Q Consensus 156 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~l~ 234 (465)
+++|++|++++ ++++. +.... | .++ +++.+|-+.+++.+.++|++ |+++..|+-|.+.-|...-...
T Consensus 90 l~~LRrLdLS~-N~Is~-I~p~A----F-----~GL-~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~ 157 (498)
T KOG4237|consen 90 LHRLRRLDLSK-NNISF-IAPDA----F-----KGL-ASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQ 157 (498)
T ss_pred hhhhceecccc-cchhh-cChHh----h-----hhh-HhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhH
Confidence 45566666665 55554 22211 1 222 33444444443445555544 5555555555555433322233
Q ss_pred cccccCccccEEecccCcccccCCC-CCCCCCCCceEEEecCCCcC------------cccccccCCCcccceeeccCCC
Q 046441 235 SGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYGCERLE------------ALPKGLHNLKSLQELRIGRGVE 301 (465)
Q Consensus 235 ~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~------------~~~~~~~~l~~L~~L~l~~~~~ 301 (465)
..+..+++|..|.+.++ .++.++. .+..+.+++.+++..|+... ..|..++.++...-..+.+. .
T Consensus 158 ~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~-R 235 (498)
T KOG4237|consen 158 DALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYK-R 235 (498)
T ss_pred HHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHH-H
Confidence 44455566666666655 4555554 44444556666655544211 11112222222222222221 1
Q ss_pred CCccCCCCCCCcccee---eecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEe
Q 046441 302 LPSLEEDGLPTNLHSL---EIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLM 378 (465)
Q Consensus 302 ~~~~~~~~~~~~L~~L---~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~ 378 (465)
+..+......-.++.+ -.+.|. .....+..- +..+++|+.|+++++ .++.+...+ +...+++++|.
T Consensus 236 i~q~~a~kf~c~~esl~s~~~~~d~-~d~~cP~~c--f~~L~~L~~lnlsnN--~i~~i~~~a------Fe~~a~l~eL~ 304 (498)
T KOG4237|consen 236 INQEDARKFLCSLESLPSRLSSEDF-PDSICPAKC--FKKLPNLRKLNLSNN--KITRIEDGA------FEGAAELQELY 304 (498)
T ss_pred hcccchhhhhhhHHhHHHhhccccC-cCCcChHHH--HhhcccceEeccCCC--ccchhhhhh------hcchhhhhhhh
Confidence 2222211111112222 122222 222222222 667888888888887 555554422 23456888888
Q ss_pred ccCCCCCccccc-cccCCCCcceEEecCCCCCCcCCCCCC--cccccEEeecCCc
Q 046441 379 IGNFPNLERLSS-SIVDLQNLTELYLGDCPKLKYFPEKGL--PSSLLRLYIDECP 430 (465)
Q Consensus 379 l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 430 (465)
+.+ ++++.+.. .+.++..|++|++.+ ++++.+.+..+ ..+|.+|.+-++|
T Consensus 305 L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 305 LTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cCc-chHHHHHHHhhhccccceeeeecC-CeeEEEecccccccceeeeeehccCc
Confidence 888 78888766 677888888888888 78888776554 4567777766543
No 19
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.21 E-value=2.5e-13 Score=123.96 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=24.2
Q ss_pred CCCCcceEEecCCCCCCcCCC--CCCcccccEEeecCCchHHHH
Q 046441 394 DLQNLTELYLGDCPKLKYFPE--KGLPSSLLRLYIDECPLIAEK 435 (465)
Q Consensus 394 ~l~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~l~~c~~l~~~ 435 (465)
....|+.+.+.+|+.+++-.. ...+++|+.+++.+|...+..
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhh
Confidence 445566666677666655222 122566777777777664443
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.20 E-value=3.6e-13 Score=122.09 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=54.2
Q ss_pred hcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCceEEEecCCCcCcccccccCCCcc
Q 046441 213 LDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLKSL 291 (465)
Q Consensus 213 ~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 291 (465)
|.++++|++|++++|.....-+..+.+...+++|.+..| .++.+.. .+..+..|+.|++++|.....-|..|..+.+|
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 566777777777776555444556666677777777776 4544433 34445567777777766444445566666677
Q ss_pred cceeeccCC
Q 046441 292 QELRIGRGV 300 (465)
Q Consensus 292 ~~L~l~~~~ 300 (465)
.+|.+-.|+
T Consensus 349 ~~l~l~~Np 357 (498)
T KOG4237|consen 349 STLNLLSNP 357 (498)
T ss_pred eeeehccCc
Confidence 777665543
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.17 E-value=7.4e-13 Score=106.54 Aligned_cols=161 Identities=23% Similarity=0.353 Sum_probs=100.8
Q ss_pred hcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCccc
Q 046441 213 LDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQ 292 (465)
Q Consensus 213 ~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 292 (465)
+..+.+++.|.++++. +..+|+.+..+.+|+.|++.++ .++.+|..++.+++|+.|++.-|. +..+|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence 4456667777777744 4446777888888888888876 778888877778888888887654 667777888888888
Q ss_pred ceeeccCCCC-CccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCc
Q 046441 293 ELRIGRGVEL-PSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLP 371 (465)
Q Consensus 293 ~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~ 371 (465)
.|++.+|..- ..+|.. +..+..|+-|+++.+ .++-+|.+.+ .+
T Consensus 106 vldltynnl~e~~lpgn---------------------------ff~m~tlralyl~dn--dfe~lp~dvg-------~l 149 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGN---------------------------FFYMTTLRALYLGDN--DFEILPPDVG-------KL 149 (264)
T ss_pred hhhccccccccccCCcc---------------------------hhHHHHHHHHHhcCC--CcccCChhhh-------hh
Confidence 8888776422 222221 223344444555543 4444444332 44
Q ss_pred cccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCC
Q 046441 372 ACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPE 414 (465)
Q Consensus 372 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 414 (465)
++|+.|.+.+ +++-++|..++.+.+|++|.+.+ ++++-+|.
T Consensus 150 t~lqil~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 150 TNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred cceeEEeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence 5555555555 56666666666666666666666 45555443
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=4.6e-12 Score=120.04 Aligned_cols=206 Identities=21% Similarity=0.186 Sum_probs=99.3
Q ss_pred CCccEEEecCCCCh------hhhhhhhcCCCCCcEEeccccccccccccccccC---ccccEEecccCccccc-----CC
Q 046441 193 PSLKVLDIYGCPKL------ESIAERLDNNTSLETISILCCENLKILPSGLHNL---RQLQEISIEKCGNLES-----FP 258 (465)
Q Consensus 193 ~~L~~L~l~~~~~l------~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~---~~L~~L~l~~~~~l~~-----l~ 258 (465)
++++.+++.++... ..++..+..+++|+.|++++|......+..+..+ ++|++|++++|. +.. +.
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~ 129 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLA 129 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHH
Confidence 45667766664322 2234455667777777777766543333333333 337777777763 321 11
Q ss_pred CCCCCC-CCCceEEEecCCCcC----cccccccCCCcccceeeccCCCCCc----cC-CCCCCCccceeeecCCcccccc
Q 046441 259 EGGLPC-AKLSKLRIYGCERLE----ALPKGLHNLKSLQELRIGRGVELPS----LE-EDGLPTNLHSLEIDGNMEIWKS 328 (465)
Q Consensus 259 ~~~~~~-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~~~~ 328 (465)
.....+ ++|+.|++++|.... .++..+..+++|++|++++|..... ++ .....++|++|++++|......
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence 112223 567777777765331 2233445556777777776632210 10 0112246777777766532221
Q ss_pred cccccccCCCCCCccEEEecCCCCccccc--ccccccccCCCCCccccceEeccCCCCCc-----cccccccCCCCcceE
Q 046441 329 TIEWGRGFHRFSSLRCLAISGCDDDMVSF--PLEDKRLGTALPLPACLASLMIGNFPNLE-----RLSSSIVDLQNLTEL 401 (465)
Q Consensus 329 ~~~~~~~~~~~~~L~~L~l~~~~~~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L 401 (465)
.......+..+++|++|++++| .+... ..-...+ ....+.|++|++.+| .++ .+...+..+++|+++
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n--~l~~~~~~~l~~~~---~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l 283 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDN--NLTDAGAAALASAL---LSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLEL 283 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCC--cCchHHHHHHHHHH---hccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEE
Confidence 1111111445667777777765 22211 0000000 001246666666664 443 122234445666666
Q ss_pred EecC
Q 046441 402 YLGD 405 (465)
Q Consensus 402 ~l~~ 405 (465)
++++
T Consensus 284 ~l~~ 287 (319)
T cd00116 284 DLRG 287 (319)
T ss_pred ECCC
Confidence 6666
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.14 E-value=1.9e-12 Score=104.26 Aligned_cols=156 Identities=21% Similarity=0.302 Sum_probs=120.7
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRI 272 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 272 (465)
..++.|.++++. +..+|+.++.+.+|+.|++.+ +.++++|..++.+++|+.|++.-+ .+..+|..+..+|.|+.|++
T Consensus 33 s~ITrLtLSHNK-l~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCc-eeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 678899999965 788899999999999999998 556779999999999999999977 77888998889999999999
Q ss_pred ecCCCc-CcccccccCCCcccceeeccCCCCCccCC-CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCC
Q 046441 273 YGCERL-EALPKGLHNLKSLQELRIGRGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGC 350 (465)
Q Consensus 273 ~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 350 (465)
..|..- ..+|..|..++.|+.|+++.| ..+.+|. .+.+++|+.|.+.+|+.+. .+.. ++.+..|++|.+.++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~-lpke----ig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS-LPKE----IGDLTRLRELHIQGN 183 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh-CcHH----HHHHHHHHHHhcccc
Confidence 886533 457877888889999999988 4555554 5777777777777776332 2222 445667777777775
Q ss_pred CCccccccc
Q 046441 351 DDDMVSFPL 359 (465)
Q Consensus 351 ~~~l~~~~~ 359 (465)
.+..+|.
T Consensus 184 --rl~vlpp 190 (264)
T KOG0617|consen 184 --RLTVLPP 190 (264)
T ss_pred --eeeecCh
Confidence 4554443
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.07 E-value=2.5e-11 Score=115.04 Aligned_cols=233 Identities=21% Similarity=0.164 Sum_probs=146.2
Q ss_pred CCccEEEecCCCCh----hhhhhhhcCCCCCcEEeccccccc------cccccccccCccccEEecccCcccccCCCCCC
Q 046441 193 PSLKVLDIYGCPKL----ESIAERLDNNTSLETISILCCENL------KILPSGLHNLRQLQEISIEKCGNLESFPEGGL 262 (465)
Q Consensus 193 ~~L~~L~l~~~~~l----~~~~~~~~~l~~L~~L~l~~~~~~------~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 262 (465)
.+|+++++.++..- ..++..+...+++++++++++... ..++..+..+++|++|++++|......+....
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 56999999997632 345666778889999999886544 12344566788999999999854332322111
Q ss_pred CC---CCCceEEEecCCCcC----cccccccCC-CcccceeeccCCCCCc----cC-CCCCCCccceeeecCCccccccc
Q 046441 263 PC---AKLSKLRIYGCERLE----ALPKGLHNL-KSLQELRIGRGVELPS----LE-EDGLPTNLHSLEIDGNMEIWKST 329 (465)
Q Consensus 263 ~~---~~L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~~~~~ 329 (465)
.+ ++|+.|++++|.... .+...+..+ ++|+.|++++|..... +. ....+++|++|++++|.......
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 12 459999999986431 222345566 8999999999853211 11 12344689999999987433222
Q ss_pred ccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc--cc----cCCCCcceEEe
Q 046441 330 IEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS--SI----VDLQNLTELYL 403 (465)
Q Consensus 330 ~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~----~~l~~L~~L~l 403 (465)
......+..+++|++|++++| .+..... ..+...+...++|++|++++| .++.... .. ...+.|++|++
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n--~i~~~~~--~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l 257 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNN--GLTDEGA--SALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSL 257 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCC--ccChHHH--HHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEc
Confidence 222111445679999999997 3332111 111112235579999999995 6664211 11 13479999999
Q ss_pred cCCCCCCc-----CCC-CCCcccccEEeecCCch
Q 046441 404 GDCPKLKY-----FPE-KGLPSSLLRLYIDECPL 431 (465)
Q Consensus 404 ~~c~~l~~-----l~~-~~~~~~L~~L~l~~c~~ 431 (465)
.+| .+++ +.. ....++|++++++++.-
T Consensus 258 ~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 258 SCN-DITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred cCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 996 4542 111 11237899999998754
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.90 E-value=2e-09 Score=112.67 Aligned_cols=135 Identities=25% Similarity=0.204 Sum_probs=61.1
Q ss_pred ccccCCCcccceeeccCCCCCccCC------CCC-CCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCccc
Q 046441 283 KGLHNLKSLQELRIGRGVELPSLEE------DGL-PTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMV 355 (465)
Q Consensus 283 ~~~~~l~~L~~L~l~~~~~~~~~~~------~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~ 355 (465)
..+..+.+|+.|.+.+|...+.... ... ++++..+.+.+|.......+. ...++|+.|.+..| ..++
T Consensus 711 ~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~-----~f~~~L~~l~l~~~-~~~e 784 (889)
T KOG4658|consen 711 SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL-----LFAPHLTSLSLVSC-RLLE 784 (889)
T ss_pred cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh-----hccCcccEEEEecc-cccc
Confidence 3455566666666666543221110 011 345555555566555544432 23567777777765 2232
Q ss_pred cccccccccc---CCCCCccccceE-eccCCCCCccccccccCCCCcceEEecCCCCCCcCCCCCCcccccEEeecCC
Q 046441 356 SFPLEDKRLG---TALPLPACLASL-MIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPEKGLPSSLLRLYIDEC 429 (465)
Q Consensus 356 ~~~~~~~~~~---~~~~~~~~L~~L-~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c 429 (465)
.+.....+.. .......+++.+ .+.+...+.++...-..++.|+.+.+..|++++.+|. +.++.+.+|
T Consensus 785 ~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~------~~~~~i~~~ 856 (889)
T KOG4658|consen 785 DIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPL------LSTLTIVGC 856 (889)
T ss_pred cCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcc------ccccceecc
Confidence 2222111110 001122233444 2333334443332112334477777777777766554 334445554
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4.5e-10 Score=103.59 Aligned_cols=205 Identities=16% Similarity=0.092 Sum_probs=137.0
Q ss_pred CCccEEEecCCCChhhhhh--hhcCCCCCcEEecccccccc--ccccccccCccccEEecccCcccccCCC--CCCCCCC
Q 046441 193 PSLKVLDIYGCPKLESIAE--RLDNNTSLETISILCCENLK--ILPSGLHNLRQLQEISIEKCGNLESFPE--GGLPCAK 266 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~ 266 (465)
.+|+.+.+.++. ++..+. ....|++++.|+++.|-... .+......+++|+.|+++.|. +..... .-..++.
T Consensus 121 kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 121 KKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSH 198 (505)
T ss_pred HhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhh
Confidence 678888888754 444442 46778899999998863322 233445568899999999873 332221 2234668
Q ss_pred CceEEEecCCCcC-cccccccCCCcccceeeccCCCCCcc-CCCCCCCccceeeecCCcccccccccccccCCCCCCccE
Q 046441 267 LSKLRIYGCERLE-ALPKGLHNLKSLQELRIGRGVELPSL-EEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRC 344 (465)
Q Consensus 267 L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~ 344 (465)
|+.|.++.|.... .+...+..+|+|+.|++.+|..+... .....+..|++|+|++|..++...... ...++.|+.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~---~~~l~~L~~ 275 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK---VGTLPGLNQ 275 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc---cccccchhh
Confidence 9999999986432 22223457899999999998522221 223566789999999999776554444 678999999
Q ss_pred EEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc--cccCCCCcceEEecC
Q 046441 345 LAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS--SIVDLQNLTELYLGD 405 (465)
Q Consensus 345 L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~ 405 (465)
|.++.| ++.++....+.........++|++|++.. |++.+.+. .+..+++|+.|.+..
T Consensus 276 Lnls~t--gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 276 LNLSST--GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred hhcccc--CcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccc
Confidence 999987 66665544433333345678999999999 78776664 444556666666554
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.84 E-value=9.5e-10 Score=115.11 Aligned_cols=227 Identities=23% Similarity=0.265 Sum_probs=131.1
Q ss_pred CCccEEEecCCCC-hhhhhh-hhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceE
Q 046441 193 PSLKVLDIYGCPK-LESIAE-RLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKL 270 (465)
Q Consensus 193 ~~L~~L~l~~~~~-l~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 270 (465)
+.|++|-+.++.. +..++. .|..++.|+.||+++|.....+|..++.+-+||+|+++++ .+..+|..+..+..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhee
Confidence 4677887777652 444433 3677888888888888888888888888888888888876 677888877777788888
Q ss_pred EEecCCCcCcccccccCCCcccceeeccCCCCCc---cCCCCCCCccceeeecCCcccccccccccccCCCCCCcc----
Q 046441 271 RIYGCERLEALPKGLHNLKSLQELRIGRGVELPS---LEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR---- 343 (465)
Q Consensus 271 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~---- 343 (465)
+++....+..+|.....+++|++|.+........ +.....+.+|+.+....... ..... +...+.|.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~----l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLED----LLGMTRLRSLLQ 697 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhh----hhhhHHHHHHhH
Confidence 8887776666665555688888888766431111 11123334444444433321 00000 11222222
Q ss_pred EEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-----cccC-CCCcceEEecCCCCCCcCCCCCC
Q 046441 344 CLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-----SIVD-LQNLTELYLGDCPKLKYFPEKGL 417 (465)
Q Consensus 344 ~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-----~~~~-l~~L~~L~l~~c~~l~~l~~~~~ 417 (465)
.+.+.++ ........ ...+.+|+.|.+.+|...+.... .... ++++..+.+.+|+.++.+....+
T Consensus 698 ~l~~~~~--~~~~~~~~-------~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f 768 (889)
T KOG4658|consen 698 SLSIEGC--SKRTLISS-------LGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF 768 (889)
T ss_pred hhhhccc--ccceeecc-------cccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhc
Confidence 2222221 11111111 12556777777777644332211 1111 45666666667776666665556
Q ss_pred cccccEEeecCCchHHHH
Q 046441 418 PSSLLRLYIDECPLIAEK 435 (465)
Q Consensus 418 ~~~L~~L~l~~c~~l~~~ 435 (465)
+++|+.|.+.+|+.+++.
T Consensus 769 ~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDI 786 (889)
T ss_pred cCcccEEEEecccccccC
Confidence 677777777777555443
No 28
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.65 E-value=2.2e-07 Score=87.70 Aligned_cols=64 Identities=31% Similarity=0.603 Sum_probs=36.8
Q ss_pred hcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCccc
Q 046441 213 LDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALP 282 (465)
Q Consensus 213 ~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 282 (465)
+..+.+++.|++++| .+..+|. + ..+|++|.+++|..++.+|... +++|+.|++++|..+..+|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 444567777777766 4454552 1 1357777777666665555432 2366666666665555444
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.65 E-value=7.8e-09 Score=91.06 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=78.5
Q ss_pred CCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEE
Q 046441 266 KLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCL 345 (465)
Q Consensus 266 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L 345 (465)
-|+++++++|. +..+.+.+.-.|.++.|+++.| .+..+.....+++|..|++++|.......+ -..+-+++.|
T Consensus 285 ~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gw-----h~KLGNIKtL 357 (490)
T KOG1259|consen 285 ELTELDLSGNL-ITQIDESVKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSGNLLAECVGW-----HLKLGNIKTL 357 (490)
T ss_pred hhhhccccccc-hhhhhhhhhhccceeEEecccc-ceeeehhhhhcccceEeecccchhHhhhhh-----HhhhcCEeee
Confidence 45555555543 3333344444555666666655 333343344556666666666653222222 2345677788
Q ss_pred EecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc--cccCCCCcceEEecCCCCCCcCCC
Q 046441 346 AISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS--SIVDLQNLTELYLGDCPKLKYFPE 414 (465)
Q Consensus 346 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~~ 414 (465)
.++++ .++.+..-. .+.+|.+||+++ ++++++.. .++++|.|+.+.+.+ +.+..++.
T Consensus 358 ~La~N--~iE~LSGL~--------KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~-NPl~~~vd 416 (490)
T KOG1259|consen 358 KLAQN--KIETLSGLR--------KLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTG-NPLAGSVD 416 (490)
T ss_pred ehhhh--hHhhhhhhH--------hhhhheeccccc-cchhhHHHhcccccccHHHHHhhcC-CCccccch
Confidence 88776 556555433 456888888888 78887765 778899999998888 45655544
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.60 E-value=2.5e-09 Score=101.93 Aligned_cols=189 Identities=21% Similarity=0.285 Sum_probs=121.5
Q ss_pred cEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecC
Q 046441 196 KVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGC 275 (465)
Q Consensus 196 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~ 275 (465)
...+++.|. ...+|..+..+..|+.+.+..|. +..+|..+.++..|..|+++.| .+..+|..++.+ -|+.|.+++|
T Consensus 78 ~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNR-FSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVSNN 153 (722)
T ss_pred hhhhccccc-cccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEecC
Confidence 445666644 55667767777777777777743 4446777888888888888877 667777766666 4888887775
Q ss_pred CCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCccc
Q 046441 276 ERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMV 355 (465)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~ 355 (465)
+++.+|..++....|.+|+.+.|. +..++.. +.++.+|+.|.+..+ .+.
T Consensus 154 -kl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq---------------------------l~~l~slr~l~vrRn--~l~ 202 (722)
T KOG0532|consen 154 -KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ---------------------------LGYLTSLRDLNVRRN--HLE 202 (722)
T ss_pred -ccccCCcccccchhHHHhhhhhhh-hhhchHH---------------------------hhhHHHHHHHHHhhh--hhh
Confidence 477777777777777777777763 3333321 334455555555554 445
Q ss_pred ccccccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCC----CCCcccccEEeecCC
Q 046441 356 SFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPE----KGLPSSLLRLYIDEC 429 (465)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~----~~~~~~L~~L~l~~c 429 (465)
.+|.+.. .+ .|..||++. |++..+|..+.++..|++|-+.+ +-+++-|. .+.....++|++..|
T Consensus 203 ~lp~El~-------~L-pLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 203 DLPEELC-------SL-PLIRLDFSC-NKISYLPVDFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hCCHHHh-------CC-ceeeeeccc-Cceeecchhhhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 5554431 22 566666665 67777777777777777777776 55666443 334456667777666
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.3e-08 Score=94.21 Aligned_cols=36 Identities=8% Similarity=0.130 Sum_probs=15.9
Q ss_pred CCCCcEEecccccccccc-ccccccCccccEEecccC
Q 046441 216 NTSLETISILCCENLKIL-PSGLHNLRQLQEISIEKC 251 (465)
Q Consensus 216 l~~L~~L~l~~~~~~~~l-~~~~~~~~~L~~L~l~~~ 251 (465)
+..|+.|++++|..+..- .....+++.|+.|.++.+
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 344555555554444311 122334455555555544
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.2e-09 Score=96.05 Aligned_cols=106 Identities=21% Similarity=0.237 Sum_probs=67.5
Q ss_pred cccceeecccCCCCc-ccccccccCCCCcEEEecCCCCCCC-CC-CCcCcCcccEEEccCCccccccccccccCCCCCcc
Q 046441 24 CRLEYLRLRYCEGLV-KLPQSSLSLSSLREIEICKCSSLVS-FP-EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLE 100 (465)
Q Consensus 24 ~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~~~~l~~-~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 100 (465)
.+|++||+++..... .+...+..|.+|+.|.+.+. .+.+ +- .+..-.+|+.|+++.|.+++......+...+..|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 357888888765421 33334566788888888876 2222 11 34456788888888888888877776667778888
Q ss_pred EEEecCCcCcceecCc---cCCCCccEEeeccc
Q 046441 101 ILEIWICCSLTYIAGV---QLPRSLKRLHILLC 130 (465)
Q Consensus 101 ~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~c 130 (465)
+|++++|......... ..-++|+.|+++||
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 8888888433322211 22356666666665
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.1e-09 Score=93.45 Aligned_cols=181 Identities=17% Similarity=0.147 Sum_probs=103.3
Q ss_pred ccccEEecccCccccc--CCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCC---CCCCCccc
Q 046441 241 RQLQEISIEKCGNLES--FPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE---DGLPTNLH 315 (465)
Q Consensus 241 ~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~L~ 315 (465)
++|++|+++.. .++. +-....+|.+|+.|.++++..-..+...+..-.+|+.|++++|..++.... ...++.|.
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 34666666653 2321 112334455666666666554344444455556677777777665554332 13456677
Q ss_pred eeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-cccC
Q 046441 316 SLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIVD 394 (465)
Q Consensus 316 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~ 394 (465)
.|++++|...+....... ..--++|+.|+++|+-.. +... ++.......++|.+||+++|..++.-.. .+..
T Consensus 264 ~LNlsWc~l~~~~Vtv~V--~hise~l~~LNlsG~rrn---l~~s--h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAV--AHISETLTQLNLSGYRRN---LQKS--HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred hcCchHhhccchhhhHHH--hhhchhhhhhhhhhhHhh---hhhh--HHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 777777765544432221 122357888888886111 1111 1111112446888888888877776322 5678
Q ss_pred CCCcceEEecCCCCCCc--CCCCCCcccccEEeecCC
Q 046441 395 LQNLTELYLGDCPKLKY--FPEKGLPSSLLRLYIDEC 429 (465)
Q Consensus 395 l~~L~~L~l~~c~~l~~--l~~~~~~~~L~~L~l~~c 429 (465)
++.|++|.++.|..+.- +-.-...|+|.+|++-+|
T Consensus 337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 89999999999976532 111123589999999888
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.42 E-value=2.1e-08 Score=90.28 Aligned_cols=248 Identities=21% Similarity=0.200 Sum_probs=131.8
Q ss_pred hhhcccccceeecccCCCCccc----ccccccCCCCcEEEecCCCC---CCCCC--------CCcCcCcccEEEccCCcc
Q 046441 19 LCELSCRLEYLRLRYCEGLVKL----PQSSLSLSSLREIEICKCSS---LVSFP--------EVALPSKLKKIRISSCDA 83 (465)
Q Consensus 19 l~~~~~~L~~L~l~~~~~l~~l----~~~~~~l~~L~~L~l~~~~~---l~~~~--------~~~~l~~L~~L~l~~~~~ 83 (465)
....+..+++|+++||..-+.. ...+.+-++|+..++++-.. ...+| .+..+++|++|+|+.+-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA- 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA- 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc-
Confidence 3345678889999988763322 23455667888888876311 11222 12225677777777643
Q ss_pred ccc--cc--cccccCCCCCccEEEecCCcCcceecCccCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccC
Q 046441 84 LKS--LP--EAWMCDTNSSLEILEIWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLL 159 (465)
Q Consensus 84 l~~--~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 159 (465)
+.. ++ ..+. ..+.+|++|.+.+| -+........-..|..+... .+... -+.|
T Consensus 104 ~G~~g~~~l~~ll-~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~--kk~~~--------------------~~~L 159 (382)
T KOG1909|consen 104 FGPKGIRGLEELL-SSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVN--KKAAS--------------------KPKL 159 (382)
T ss_pred cCccchHHHHHHH-HhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHH--hccCC--------------------Ccce
Confidence 211 10 0111 12466777777766 33332222222233333311 11111 2457
Q ss_pred CeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCCh----hhhhhhhcCCCCCcEEeccccccccc---
Q 046441 160 EHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKL----ESIAERLDNNTSLETISILCCENLKI--- 232 (465)
Q Consensus 160 ~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l----~~~~~~~~~l~~L~~L~l~~~~~~~~--- 232 (465)
+++..++ +.+.+ .+...+...+... +.|+.+.+..|..- ..+...+..+++|++||+.+|.....
T Consensus 160 rv~i~~r-Nrlen-~ga~~~A~~~~~~------~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 160 RVFICGR-NRLEN-GGATALAEAFQSH------PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred EEEEeec-ccccc-ccHHHHHHHHHhc------cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 7777776 55555 5544444444332 56888888776532 23445678888888888888765432
Q ss_pred -cccccccCccccEEecccCcccccCC------CCCCCCCCCceEEEecCCCcCc----ccccccCCCcccceeeccCC
Q 046441 233 -LPSGLHNLRQLQEISIEKCGNLESFP------EGGLPCAKLSKLRIYGCERLEA----LPKGLHNLKSLQELRIGRGV 300 (465)
Q Consensus 233 -l~~~~~~~~~L~~L~l~~~~~l~~l~------~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~ 300 (465)
+...++.+++|++|++++| .++.-. ..-...|+|+.+.+.+|..-.. +...+...+.|+.|++++|.
T Consensus 232 ~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 3455666778888888888 443211 0111245677777777653211 11123335566666666663
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.42 E-value=1.2e-06 Score=82.95 Aligned_cols=71 Identities=30% Similarity=0.565 Sum_probs=44.0
Q ss_pred cCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEEEecCCcCcceecCccCCCCccEE
Q 046441 46 SLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAGVQLPRSLKRL 125 (465)
Q Consensus 46 ~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L 125 (465)
.++++++|++++| .++.+|. ..++|++|.+.+|..++.+|..+ .++|++|.+++|..+..+ ++.|+.|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~sL-----P~sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV--LPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEISGL-----PESVRSL 117 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC--CCCCCcEEEccCCCCcccCCchh----hhhhhheEccCccccccc-----ccccceE
Confidence 3567777777777 6666662 34567777777777666666431 256777777777555433 3456666
Q ss_pred eec
Q 046441 126 HIL 128 (465)
Q Consensus 126 ~l~ 128 (465)
.+.
T Consensus 118 ~L~ 120 (426)
T PRK15386 118 EIK 120 (426)
T ss_pred EeC
Confidence 654
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.39 E-value=1.3e-07 Score=79.60 Aligned_cols=105 Identities=20% Similarity=0.237 Sum_probs=32.2
Q ss_pred CccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccc-cCCCcccceeeccCCCCCcc---CCCCCCCccc
Q 046441 240 LRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGL-HNLKSLQELRIGRGVELPSL---EEDGLPTNLH 315 (465)
Q Consensus 240 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~---~~~~~~~~L~ 315 (465)
+.+|+.|++++| .++.+.. ...++.|+.|++++|. ++.+.+.+ ..+++|++|++++|. +..+ .....+++|+
T Consensus 41 l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 41 LDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLR 116 (175)
T ss_dssp -TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--
T ss_pred hcCCCEEECCCC-CCccccC-ccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcc
Confidence 445555555555 4444432 2224455555555553 33333223 245666666666552 2222 2223455666
Q ss_pred eeeecCCcccccccccccccCCCCCCccEEEecC
Q 046441 316 SLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISG 349 (465)
Q Consensus 316 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 349 (465)
.|++.+|+... ...+..-.+..+|+|+.||-..
T Consensus 117 ~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 117 VLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEE
T ss_pred eeeccCCcccc-hhhHHHHHHHHcChhheeCCEE
Confidence 66666666322 1111111144566777765443
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.39 E-value=1.2e-07 Score=83.74 Aligned_cols=125 Identities=24% Similarity=0.294 Sum_probs=92.6
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRI 272 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 272 (465)
..|+.+++++|. +..+.....-.|+++.|++++|..... ..+..+++|+.|++++| .+..+......+.++++|.+
T Consensus 284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccc-hhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 458889999854 777777788888999999998765542 23777889999999987 56666655556678889988
Q ss_pred ecCCCcCcccccccCCCcccceeeccCC--CCCccCCCCCCCccceeeecCCc
Q 046441 273 YGCERLEALPKGLHNLKSLQELRIGRGV--ELPSLEEDGLPTNLHSLEIDGNM 323 (465)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~ 323 (465)
.+|. +..+. .++.+-+|..|++++|. .+..+..+|.+|.|+++.+.+|+
T Consensus 360 a~N~-iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNK-IETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhh-Hhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 8863 55553 56777788888888874 33445556778888888888887
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.32 E-value=7.5e-07 Score=87.03 Aligned_cols=127 Identities=23% Similarity=0.313 Sum_probs=60.7
Q ss_pred CCccEEEecCCCChhhhhhhhcCCC-CCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNT-SLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLR 271 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~-~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 271 (465)
+.++.+++.++. +..++....... +|+.|+++++.. ..+|..+..+++|+.|++++| .+..++......+.|+.|+
T Consensus 116 ~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcc-cccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhee
Confidence 345555555533 444454444442 566666665332 223344555566666666655 4555554433344555555
Q ss_pred EecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCc
Q 046441 272 IYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNM 323 (465)
Q Consensus 272 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 323 (465)
+++|. +..+|........|+++.+++|..+..........++..+.+.++.
T Consensus 193 ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 193 LSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred ccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce
Confidence 55543 4444443334444555555555323333223333444444444433
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.26 E-value=1.1e-06 Score=74.08 Aligned_cols=125 Identities=20% Similarity=0.177 Sum_probs=39.7
Q ss_pred CCCcccceeeccCCCCCccCCCC-CCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCccccccccccccc
Q 046441 287 NLKSLQELRIGRGVELPSLEEDG-LPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLG 365 (465)
Q Consensus 287 ~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~ 365 (465)
+..++++|+++++ .+..+...+ .+.+|+.|++++|.... ... +..+++|++|++++| .+..+.....
T Consensus 17 n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~N~I~~-l~~-----l~~L~~L~~L~L~~N--~I~~i~~~l~--- 84 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QISTIENLGATLDKLEVLDLSNNQITK-LEG-----LPGLPRLKTLDLSNN--RISSISEGLD--- 84 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---TT---------TT--EEE--SS-----S-CHHHH---
T ss_pred ccccccccccccc-ccccccchhhhhcCCCEEECCCCCCcc-ccC-----ccChhhhhhcccCCC--CCCccccchH---
Confidence 4446788888887 455554444 45678888888877322 221 456677888888876 5555532110
Q ss_pred CCCCCccccceEeccCCCCCccccc--cccCCCCcceEEecCCCCCCcCCCC-----CCcccccEEeecC
Q 046441 366 TALPLPACLASLMIGNFPNLERLSS--SIVDLQNLTELYLGDCPKLKYFPEK-----GLPSSLLRLYIDE 428 (465)
Q Consensus 366 ~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~l~~ 428 (465)
..+++|++|++++ |++..+.. .+..+++|+.|++.+++ +++-+.. ..+|+|+.||-..
T Consensus 85 ---~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 85 ---KNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp ---HH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ---HhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 0245777777777 66666544 45567777777777743 4443331 1257777776544
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.25 E-value=9e-07 Score=86.45 Aligned_cols=172 Identities=24% Similarity=0.265 Sum_probs=114.7
Q ss_pred cccCCeeeccCCCCccccccCCCcchhhhhcccCCCCC-CccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccc
Q 046441 156 SSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPP-SLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILP 234 (465)
Q Consensus 156 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~ 234 (465)
++.++.+.+.+ +.+.+ ++.. ..... +|+.|+++++. +..+|..++.+++|+.|++++|.. ..++
T Consensus 115 ~~~l~~L~l~~-n~i~~-i~~~-----------~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~l-~~l~ 179 (394)
T COG4886 115 LTNLTSLDLDN-NNITD-IPPL-----------IGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDL-SDLP 179 (394)
T ss_pred ccceeEEecCC-ccccc-Cccc-----------cccchhhcccccccccc-hhhhhhhhhccccccccccCCchh-hhhh
Confidence 35677777777 66666 3321 22223 78888888854 677766688888999999988554 3456
Q ss_pred cccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCcc
Q 046441 235 SGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNL 314 (465)
Q Consensus 235 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 314 (465)
......++|+.|+++++ .+..++........|+++.+.+|.. ...+..+..+.++..+.+..+.........+.++++
T Consensus 180 ~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l 257 (394)
T COG4886 180 KLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNL 257 (394)
T ss_pred hhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceeeeccchhcccccc
Confidence 55557788888998887 7788877644444688888888752 333445677777877776666433223334666778
Q ss_pred ceeeecCCcccccccccccccCCCCCCccEEEecCC
Q 046441 315 HSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGC 350 (465)
Q Consensus 315 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 350 (465)
++|++++|.... ... +....+++.|+++++
T Consensus 258 ~~L~~s~n~i~~-i~~-----~~~~~~l~~L~~s~n 287 (394)
T COG4886 258 ETLDLSNNQISS-ISS-----LGSLTNLRELDLSGN 287 (394)
T ss_pred ceeccccccccc-ccc-----ccccCccCEEeccCc
Confidence 888888887333 221 346678888888875
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.05 E-value=5.4e-07 Score=81.37 Aligned_cols=231 Identities=17% Similarity=0.120 Sum_probs=141.9
Q ss_pred CCccEEEecCCCChhh----hhhhhcCCCCCcEEeccccccc---ccc-------ccccccCccccEEecccCcccccCC
Q 046441 193 PSLKVLDIYGCPKLES----IAERLDNNTSLETISILCCENL---KIL-------PSGLHNLRQLQEISIEKCGNLESFP 258 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~----~~~~~~~l~~L~~L~l~~~~~~---~~l-------~~~~~~~~~L~~L~l~~~~~l~~l~ 258 (465)
.+++++++++|+.-.. +-+.+...++|+..++++--.- .++ .+.+.+++.|+++++++|-.-...+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 7899999999875432 4445677788998888763211 112 2445667899999999983222221
Q ss_pred ----CCCCCCCCCceEEEecCCCcCc--------------ccccccCCCcccceeeccCCCCCccCC------CCCCCcc
Q 046441 259 ----EGGLPCAKLSKLRIYGCERLEA--------------LPKGLHNLKSLQELRIGRGVELPSLEE------DGLPTNL 314 (465)
Q Consensus 259 ----~~~~~~~~L~~L~l~~~~~~~~--------------~~~~~~~l~~L~~L~l~~~~~~~~~~~------~~~~~~L 314 (465)
..+..+..|++|++.+|-. .. ...-.+.-+.|+.+...+|. +...+. ....+.|
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTL 187 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhcccc
Confidence 2233466899999988842 21 11123445678888888774 322221 1234788
Q ss_pred ceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc----
Q 046441 315 HSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS---- 390 (465)
Q Consensus 315 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---- 390 (465)
+.+.+..|..-..........+.++++|+.|++..|....+ ...++...+..+++|++|.+++| .++.-..
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e----gs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~ 262 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE----GSVALAKALSSWPHLRELNLGDC-LLENEGAIAFV 262 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH----HHHHHHHHhcccchheeeccccc-ccccccHHHHH
Confidence 99999888754433322222277889999999998621111 11223334456778999999998 5553221
Q ss_pred --cccCCCCcceEEecCCCCCCcCCC------CCCcccccEEeecCCch
Q 046441 391 --SIVDLQNLTELYLGDCPKLKYFPE------KGLPSSLLRLYIDECPL 431 (465)
Q Consensus 391 --~~~~l~~L~~L~l~~c~~l~~l~~------~~~~~~L~~L~l~~c~~ 431 (465)
.-...|+|++|.+.+| .++.=.. ..--|.|+.|++.+|..
T Consensus 263 ~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2234789999999984 5544100 11158899999988743
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.04 E-value=1.1e-05 Score=83.03 Aligned_cols=107 Identities=17% Similarity=0.184 Sum_probs=65.4
Q ss_pred CcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeecc
Q 046441 219 LETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGR 298 (465)
Q Consensus 219 L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 298 (465)
++.|+++++...+.+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56666666655555666666677777777776643345565555666777777777665556666667777777777777
Q ss_pred CCCCCccCCC--CCCCccceeeecCCccc
Q 046441 299 GVELPSLEED--GLPTNLHSLEIDGNMEI 325 (465)
Q Consensus 299 ~~~~~~~~~~--~~~~~L~~L~l~~~~~~ 325 (465)
|.....+|.. ....++..+++.+|..+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 6544444432 12234556666666543
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.98 E-value=7.9e-06 Score=56.12 Aligned_cols=55 Identities=27% Similarity=0.362 Sum_probs=28.5
Q ss_pred ccceEeccCCCCCccccc-cccCCCCcceEEecCCCCCCcCCCCCC--cccccEEeecCC
Q 046441 373 CLASLMIGNFPNLERLSS-SIVDLQNLTELYLGDCPKLKYFPEKGL--PSSLLRLYIDEC 429 (465)
Q Consensus 373 ~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c 429 (465)
+|++|++.+ ++++.++. .+.++++|++|++++ +.++.++...+ +++|++|++++|
T Consensus 2 ~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSN-NKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETS-STESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCC-CCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 455555555 25555553 445555555555554 44555544332 455555555554
No 44
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.94 E-value=6.7e-07 Score=89.87 Aligned_cols=194 Identities=24% Similarity=0.325 Sum_probs=92.5
Q ss_pred cCCCCCcEEecccccccccc--ccccccCccccEEecccCccccc--CCCCCCCCCCCceEEEecCCCcCc--ccccccC
Q 046441 214 DNNTSLETISILCCENLKIL--PSGLHNLRQLQEISIEKCGNLES--FPEGGLPCAKLSKLRIYGCERLEA--LPKGLHN 287 (465)
Q Consensus 214 ~~l~~L~~L~l~~~~~~~~l--~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~ 287 (465)
..+++|+.|+++++..+... ......+++|++|.+..|..++. +......+++|++|++++|..+.. +......
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 34455566666555533321 11111255566665555543221 122333344566666665554321 1111223
Q ss_pred CCcccceeeccCCCCCccCCCCCCCccceeeecCCcccc-cccccccccCCCCCCccEEEecCCCCcccccccccccccC
Q 046441 288 LKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIW-KSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGT 366 (465)
Q Consensus 288 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~ 366 (465)
+++++.|.+..... ++.++.+.+.++.... +...... ...+++++.+.+.++ .
T Consensus 320 c~~l~~l~~~~~~~---------c~~l~~~~l~~~~~~~~d~~~~~~--~~~~~~l~~~~l~~~--~------------- 373 (482)
T KOG1947|consen 320 CPNLRELKLLSLNG---------CPSLTDLSLSGLLTLTSDDLAELI--LRSCPKLTDLSLSYC--G------------- 373 (482)
T ss_pred CcchhhhhhhhcCC---------CccHHHHHHHHhhccCchhHhHHH--HhcCCCcchhhhhhh--h-------------
Confidence 33343333322211 2344444444443322 1122111 456677777777765 1
Q ss_pred CCCCccccc-eEeccCCCCC-ccccccccCCCCcceEEecCCCCCCcCCCCCC---cccccEEeecCCchHHHHHh
Q 046441 367 ALPLPACLA-SLMIGNFPNL-ERLSSSIVDLQNLTELYLGDCPKLKYFPEKGL---PSSLLRLYIDECPLIAEKCR 437 (465)
Q Consensus 367 ~~~~~~~L~-~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~l~~c~~l~~~~~ 437 (465)
..... .+.+.+|+.+ ..+......+..++.|.+..|...+.-..... ..+++.+++.+|+.+.....
T Consensus 374 ----~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 374 ----ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred ----ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 01111 4556777777 33333233334488899998876666322111 56788888888877665543
No 45
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.92 E-value=1.7e-06 Score=86.98 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=16.5
Q ss_pred cCcccEEEccCCccccccccccccCCCCCccEEEecCCc
Q 046441 70 PSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICC 108 (465)
Q Consensus 70 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 108 (465)
+++|+.|++..|..+.+......+..+++|+.|.+.+|.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 344444444444433333333333333444444444443
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.86 E-value=6.5e-07 Score=85.88 Aligned_cols=100 Identities=26% Similarity=0.368 Sum_probs=48.3
Q ss_pred ccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEec
Q 046441 195 LKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYG 274 (465)
Q Consensus 195 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 274 (465)
|+.|-+.+|+ ++.+|..++..+.|..|+++.|... .+|.-+.++.+|+.|.+..| .+..+|+....+ .|..|+++.
T Consensus 145 Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn-~l~~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 145 LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCC-ceeeeeccc
Confidence 4555555432 4445555555555555555553322 24444555555555555554 344444433333 455555554
Q ss_pred CCCcCcccccccCCCcccceeeccC
Q 046441 275 CERLEALPKGLHNLKSLQELRIGRG 299 (465)
Q Consensus 275 ~~~~~~~~~~~~~l~~L~~L~l~~~ 299 (465)
| ++..+|..|..++.|++|-+.+|
T Consensus 221 N-kis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 221 N-KISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred C-ceeecchhhhhhhhheeeeeccC
Confidence 3 34445555555555555555554
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.84 E-value=1.8e-05 Score=54.31 Aligned_cols=57 Identities=26% Similarity=0.373 Sum_probs=31.2
Q ss_pred CccEEEecCCCChhhhhh-hhcCCCCCcEEeccccccccccccccccCccccEEecccC
Q 046441 194 SLKVLDIYGCPKLESIAE-RLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKC 251 (465)
Q Consensus 194 ~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~ 251 (465)
+|++|++++| .+..+|. .|..+++|++|++++|.....-+..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4566666664 3444443 3555666666666654443333445556666666666655
No 48
>PLN03150 hypothetical protein; Provisional
Probab=97.81 E-value=3.3e-05 Score=79.52 Aligned_cols=112 Identities=16% Similarity=0.173 Sum_probs=79.5
Q ss_pred cccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCC-CCCCCccceeeec
Q 046441 242 QLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE-DGLPTNLHSLEID 320 (465)
Q Consensus 242 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~ 320 (465)
.++.|+++++..-..+|..+..+++|+.|++++|.....+|..++.+++|+.|++++|.....+|. .+.+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 377888888855556777777788999999999876678888889999999999999865555654 4678899999999
Q ss_pred CCcccccccccccccCCCCCCccEEEecCCCCccccc
Q 046441 321 GNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSF 357 (465)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~ 357 (465)
+|......+... .....++..+++.+| ..+...
T Consensus 499 ~N~l~g~iP~~l---~~~~~~~~~l~~~~N-~~lc~~ 531 (623)
T PLN03150 499 GNSLSGRVPAAL---GGRLLHRASFNFTDN-AGLCGI 531 (623)
T ss_pred CCcccccCChHH---hhccccCceEEecCC-ccccCC
Confidence 987333333222 112345677888875 334433
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=3.6e-05 Score=48.48 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=29.5
Q ss_pred cccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCC
Q 046441 24 CRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE 66 (465)
Q Consensus 24 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~ 66 (465)
++|++|++++|.. +.+|..+++|++|+.|++++| .++++++
T Consensus 1 ~~L~~L~l~~N~i-~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQI-TDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCC-cccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4688888888876 677776788888888888887 5666554
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=4e-05 Score=68.10 Aligned_cols=188 Identities=14% Similarity=0.130 Sum_probs=81.8
Q ss_pred CCCCCcEEecccccccc--ccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCc-CcccccccCCCcc
Q 046441 215 NNTSLETISILCCENLK--ILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERL-EALPKGLHNLKSL 291 (465)
Q Consensus 215 ~l~~L~~L~l~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L 291 (465)
.+..++.+|+.+|.... ++...+.++|.|++|+++.|+.-..+.....+..+|+.|.+.+-..- +.....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34455555555543222 12233444555566665555322222222233445555555442110 1111223445555
Q ss_pred cceeeccCC----CCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCC
Q 046441 292 QELRIGRGV----ELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTA 367 (465)
Q Consensus 292 ~~L~l~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~ 367 (465)
+.|+++.|. .+..-......+.+++++...|....-.-.. +....+|++..+-++.| .++......+
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e~--PlK~~s~ek~----- 219 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCEG--PLKTESSEKG----- 219 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeecC--cccchhhccc-----
Confidence 566555542 1111111123345666666666522110000 01234677777777765 3333332211
Q ss_pred CCCccccceEeccCCCCCccccc--cccCCCCcceEEecCCCCCCcC
Q 046441 368 LPLPACLASLMIGNFPNLERLSS--SIVDLQNLTELYLGDCPKLKYF 412 (465)
Q Consensus 368 ~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l 412 (465)
....+.+--|.+.. +++.+... .+..+++|..|.+.+.+-...+
T Consensus 220 se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 01223444455554 44444332 4556777777777775544333
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=1.8e-05 Score=81.38 Aligned_cols=160 Identities=18% Similarity=0.129 Sum_probs=89.8
Q ss_pred CccccEEecccCccccc-CC-CCCCCCCCCceEEEecCCCcC-cccccccCCCcccceeeccCCCCCccCCCCCCCccce
Q 046441 240 LRQLQEISIEKCGNLES-FP-EGGLPCAKLSKLRIYGCERLE-ALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHS 316 (465)
Q Consensus 240 ~~~L~~L~l~~~~~l~~-l~-~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 316 (465)
-.+|++|++++...+.. ++ ..+..+|+|++|.+.+-.... .+.....++|+|..||++++ ++..+.+.+.+++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHH
Confidence 35788888877544322 12 244557788888887743221 12234467888888888887 5666666677788888
Q ss_pred eeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCcc--ccccccC
Q 046441 317 LEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLER--LSSSIVD 394 (465)
Q Consensus 317 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~ 394 (465)
|.+.+-+-........ +..+++|+.||++.. .. ..-+....+-......+|+|+.||.++ ..+.. +......
T Consensus 200 L~mrnLe~e~~~~l~~---LF~L~~L~vLDIS~~-~~-~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~s 273 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLID---LFNLKKLRVLDISRD-KN-NDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNS 273 (699)
T ss_pred HhccCCCCCchhhHHH---HhcccCCCeeecccc-cc-ccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHh
Confidence 8877765332111111 557888888888874 11 111111111112223566888888876 34332 1223334
Q ss_pred CCCcceEEecCC
Q 046441 395 LQNLTELYLGDC 406 (465)
Q Consensus 395 l~~L~~L~l~~c 406 (465)
-++|+.+.+-+|
T Consensus 274 H~~L~~i~~~~~ 285 (699)
T KOG3665|consen 274 HPNLQQIAALDC 285 (699)
T ss_pred CccHhhhhhhhh
Confidence 456665554443
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.55 E-value=2.1e-06 Score=84.78 Aligned_cols=122 Identities=24% Similarity=0.206 Sum_probs=76.5
Q ss_pred cccceeeccCCCCCccC-CCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCC
Q 046441 290 SLQELRIGRGVELPSLE-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTAL 368 (465)
Q Consensus 290 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~ 368 (465)
.|...+.++|. +..+. +...++.++.|+|+.|.-.+... +..+++|++|++++| .+..+|.-.
T Consensus 165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v~~------Lr~l~~LkhLDlsyN--~L~~vp~l~------- 228 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKVDN------LRRLPKLKHLDLSYN--CLRHVPQLS------- 228 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhhHH------HHhcccccccccccc--hhccccccc-------
Confidence 34444455442 22222 23455677777777776333221 567788888888886 566665532
Q ss_pred CCccccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCC---CCCcccccEEeecCCc
Q 046441 369 PLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPE---KGLPSSLLRLYIDECP 430 (465)
Q Consensus 369 ~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~c~ 430 (465)
..--+|+.|.+++ |.++.+- ++.++.+|+.||+++ +-+..... .+.+..|++|++.|+|
T Consensus 229 ~~gc~L~~L~lrn-N~l~tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 229 MVGCKLQLLNLRN-NALTTLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhheeeeecc-cHHHhhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 1223588888888 7777776 577888888888888 55555443 2235778888888875
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.54 E-value=1.5e-05 Score=78.25 Aligned_cols=189 Identities=24% Similarity=0.273 Sum_probs=98.1
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRI 272 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 272 (465)
.+|+.+++.++. +..+...+..+++|++|++++|.... + ..+..++.|+.|++.+| .+..+..... ++.|+.+++
T Consensus 95 ~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~-i-~~l~~l~~L~~L~l~~N-~i~~~~~~~~-l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITK-L-EGLSTLTLLKELNLSGN-LISDISGLES-LKSLKLLDL 169 (414)
T ss_pred cceeeeeccccc-hhhcccchhhhhcchheecccccccc-c-cchhhccchhhheeccC-cchhccCCcc-chhhhcccC
Confidence 677777777744 54444335667777777777754433 2 23455566777777777 4555544222 456777777
Q ss_pred ecCCCcCccccc-ccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCC--ccEEEecC
Q 046441 273 YGCERLEALPKG-LHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSS--LRCLAISG 349 (465)
Q Consensus 273 ~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~ 349 (465)
++|.. ..+... ...+.+++.+.++++. +..+........+..+++..+....... +..+.. |+.+++.+
T Consensus 170 ~~n~i-~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~~~~~~~l~~~~l~~n~i~~~~~------l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 170 SYNRI-VDIENDELSELISLEELDLGGNS-IREIEGLDLLKKLVLLSLLDNKISKLEG------LNELVMLHLRELYLSG 241 (414)
T ss_pred Ccchh-hhhhhhhhhhccchHHHhccCCc-hhcccchHHHHHHHHhhcccccceeccC------cccchhHHHHHHhccc
Confidence 77653 222211 3566777777777763 3333222233334444555444222111 112222 67777777
Q ss_pred CCCcccccccccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecC
Q 046441 350 CDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGD 405 (465)
Q Consensus 350 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 405 (465)
+ .+...+... ..+..+..+++.+ +++..+. .+...+.+..+....
T Consensus 242 n--~i~~~~~~~-------~~~~~l~~l~~~~-n~~~~~~-~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 242 N--RISRSPEGL-------ENLKNLPVLDLSS-NRISNLE-GLERLPKLSELWLND 286 (414)
T ss_pred C--ccccccccc-------cccccccccchhh-ccccccc-cccccchHHHhccCc
Confidence 5 444432111 1344666666666 4444443 233344444444444
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.43 E-value=0.00018 Score=45.31 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=31.5
Q ss_pred cccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCC
Q 046441 372 ACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPE 414 (465)
Q Consensus 372 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 414 (465)
++|++|++++ ++++.++..+.++++|++|++++| .+++++.
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 3688888888 688888877889999999999994 6777654
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.42 E-value=3.7e-05 Score=75.41 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=44.2
Q ss_pred cccCCCCcEEEecCCCCCCCCCC-CcCcCcccEEEccCCccccccccccccCCCCCccEEEecCCcCcceecCccCCCCc
Q 046441 44 SLSLSSLREIEICKCSSLVSFPE-VALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAGVQLPRSL 122 (465)
Q Consensus 44 ~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L 122 (465)
++.+.+|..|++.++ .++.+.. +..+++|++|+++++ .++++... ..++.|+.|++.++ .+..+.....+++|
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l---~~l~~L~~L~l~~N-~i~~~~~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKLEGL---STLTLLKELNLSGN-LISDISGLESLKSL 164 (414)
T ss_pred cccccceeeeecccc-chhhcccchhhhhcchheecccc-ccccccch---hhccchhhheeccC-cchhccCCccchhh
Confidence 444566666666655 4444444 455666666666663 35544443 33344666666664 45555555445566
Q ss_pred cEEeeccc
Q 046441 123 KRLHILLC 130 (465)
Q Consensus 123 ~~L~l~~c 130 (465)
+.++++++
T Consensus 165 ~~l~l~~n 172 (414)
T KOG0531|consen 165 KLLDLSYN 172 (414)
T ss_pred hcccCCcc
Confidence 66666553
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.40 E-value=2.6e-06 Score=84.15 Aligned_cols=123 Identities=24% Similarity=0.261 Sum_probs=81.8
Q ss_pred CccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEe
Q 046441 194 SLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIY 273 (465)
Q Consensus 194 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 273 (465)
.|...++++|. +......+.-++.|+.|++++|..... ..+..++.|++|++++| .++.+|.....--.|..|.++
T Consensus 165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccc-hhccccccchhhhhheeeeec
Confidence 35555666643 555555666777888888888765442 25667788888888887 677777633222258888888
Q ss_pred cCCCcCcccccccCCCcccceeeccCCCCCccC---CCCCCCccceeeecCCc
Q 046441 274 GCERLEALPKGLHNLKSLQELRIGRGVELPSLE---EDGLPTNLHSLEIDGNM 323 (465)
Q Consensus 274 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~ 323 (465)
+|. ++.+- .+.++.+|+.|++++|- +.... ....+..|+.|+|.||+
T Consensus 241 nN~-l~tL~-gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 241 NNA-LTTLR-GIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccH-HHhhh-hHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 875 45443 57788888888888873 32222 23455678888888887
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.16 E-value=0.00027 Score=72.85 Aligned_cols=33 Identities=36% Similarity=0.484 Sum_probs=16.9
Q ss_pred CCceEEEecCCCc-Cccccccc-CCCcccceeecc
Q 046441 266 KLSKLRIYGCERL-EALPKGLH-NLKSLQELRIGR 298 (465)
Q Consensus 266 ~L~~L~l~~~~~~-~~~~~~~~-~l~~L~~L~l~~ 298 (465)
+|++|++++...+ ..+|..++ .+|+|+.|.+.+
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~ 157 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG 157 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecC
Confidence 5666666664332 22333332 456666666655
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.00043 Score=61.73 Aligned_cols=83 Identities=11% Similarity=-0.017 Sum_probs=42.0
Q ss_pred ccccceeecccCCCCcccc---cccccCCCCcEEEecCCCCCCCCCCC-cCcCcccEEEccCCccccccccccccCCCCC
Q 046441 23 SCRLEYLRLRYCEGLVKLP---QSSLSLSSLREIEICKCSSLVSFPEV-ALPSKLKKIRISSCDALKSLPEAWMCDTNSS 98 (465)
Q Consensus 23 ~~~L~~L~l~~~~~l~~l~---~~~~~l~~L~~L~l~~~~~l~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 98 (465)
.++++.+++.+|.. ..|. ..+.++|.|+.|+++.|+--..+... .-..+|++|.+.+ +++.--.........|.
T Consensus 70 ~~~v~elDL~~N~i-SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 70 VTDVKELDLTGNLI-SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhhcccchh-ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-CCCChhhhhhhhhcchh
Confidence 35677777777665 4333 23456777777777766322222111 1245777777765 33321111111123355
Q ss_pred ccEEEecCC
Q 046441 99 LEILEIWIC 107 (465)
Q Consensus 99 L~~L~l~~~ 107 (465)
+++|.++.+
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 566655554
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.94 E-value=0.00013 Score=64.15 Aligned_cols=197 Identities=20% Similarity=0.134 Sum_probs=102.4
Q ss_pred ccccceeecccCCCCcccc----cccccCCCCcEEEecCCCC---CCCC--------CCCcCcCcccEEEccCCcccccc
Q 046441 23 SCRLEYLRLRYCEGLVKLP----QSSLSLSSLREIEICKCSS---LVSF--------PEVALPSKLKKIRISSCDALKSL 87 (465)
Q Consensus 23 ~~~L~~L~l~~~~~l~~l~----~~~~~l~~L~~L~l~~~~~---l~~~--------~~~~~l~~L~~L~l~~~~~l~~~ 87 (465)
...+..+++|||..-++.. ..+.+-.+|+..+++.-.. ...+ +.+-.||+|+.++++.+-.-...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4788999999998754433 3455667888888876411 0111 23445888888888875421122
Q ss_pred ccc---cccCCCCCccEEEecCCcCcceecCccCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeec
Q 046441 88 PEA---WMCDTNSSLEILEIWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEI 164 (465)
Q Consensus 88 ~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 164 (465)
++. ++ ..-..|++|.+.+| .+..+.....-..|..|... .+...- |.|+++..
T Consensus 109 ~e~L~d~i-s~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~n--KKaa~k--------------------p~Le~vic 164 (388)
T COG5238 109 PEELGDLI-SSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYN--KKAADK--------------------PKLEVVIC 164 (388)
T ss_pred chHHHHHH-hcCCCceeEEeecC-CCCccchhHHHHHHHHHHHH--hhhccC--------------------CCceEEEe
Confidence 221 11 11267888888776 45544433222233333221 111111 44666665
Q ss_pred cCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhh-----hhhhhcCCCCCcEEeccccccccc----ccc
Q 046441 165 GNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLES-----IAERLDNNTSLETISILCCENLKI----LPS 235 (465)
Q Consensus 165 ~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~~~~~~~----l~~ 235 (465)
.+ +.+.. .+.......+.. ...|+.+.+..|..-.. +..++..+++|+.||+++|..... +..
T Consensus 165 gr-NRlen-gs~~~~a~~l~s------h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 165 GR-NRLEN-GSKELSAALLES------HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred cc-chhcc-CcHHHHHHHHHh------hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 55 45544 332222222211 13577777776543211 223456677777777777654322 223
Q ss_pred ccccCccccEEecccC
Q 046441 236 GLHNLRQLQEISIEKC 251 (465)
Q Consensus 236 ~~~~~~~L~~L~l~~~ 251 (465)
.+..++.|++|.+.+|
T Consensus 237 al~~W~~lrEL~lnDC 252 (388)
T COG5238 237 ALCEWNLLRELRLNDC 252 (388)
T ss_pred Hhcccchhhhccccch
Confidence 3444566677766666
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.88 E-value=0.0029 Score=53.40 Aligned_cols=102 Identities=13% Similarity=0.136 Sum_probs=63.9
Q ss_pred CccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-
Q 046441 312 TNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS- 390 (465)
Q Consensus 312 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~- 390 (465)
.+...+++++|+...... +.++++|.+|.+.++ .+..+..... ...++|..|.+.+ +++..+.+
T Consensus 42 d~~d~iDLtdNdl~~l~~------lp~l~rL~tLll~nN--rIt~I~p~L~------~~~p~l~~L~Ltn-Nsi~~l~dl 106 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN------LPHLPRLHTLLLNNN--RITRIDPDLD------TFLPNLKTLILTN-NSIQELGDL 106 (233)
T ss_pred cccceecccccchhhccc------CCCccccceEEecCC--cceeeccchh------hhccccceEEecC-cchhhhhhc
Confidence 355666677666322111 446677777777776 5555554332 3456777777777 66666654
Q ss_pred -cccCCCCcceEEecCCCCCCcCCCC-----CCcccccEEeecCC
Q 046441 391 -SIVDLQNLTELYLGDCPKLKYFPEK-----GLPSSLLRLYIDEC 429 (465)
Q Consensus 391 -~~~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~l~~c 429 (465)
....||+|++|.+-+ +.++.-... ...|+|+.||+.+-
T Consensus 107 ~pLa~~p~L~~Ltll~-Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 107 DPLASCPKLEYLTLLG-NPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred chhccCCccceeeecC-CchhcccCceeEEEEecCcceEeehhhh
Confidence 456788888888888 445553331 12688999888765
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.46 E-value=0.0058 Score=51.67 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=38.4
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC--CCCCCCCCceE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE--GGLPCAKLSKL 270 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L 270 (465)
.+...+++++|... .+ ..|..++.|.+|.+..|.....-|.-...+++|+.|.+.+| .+..+.. ....+|+|+.|
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCcccee
Confidence 34555666664422 21 22445566666666665444333332233455666666655 3333322 22234455555
Q ss_pred EEecCC
Q 046441 271 RIYGCE 276 (465)
Q Consensus 271 ~l~~~~ 276 (465)
.+-+|+
T Consensus 119 tll~Np 124 (233)
T KOG1644|consen 119 TLLGNP 124 (233)
T ss_pred eecCCc
Confidence 555543
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.00015 Score=63.95 Aligned_cols=56 Identities=16% Similarity=0.083 Sum_probs=30.4
Q ss_pred CCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCC
Q 046441 288 LKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGC 350 (465)
Q Consensus 288 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 350 (465)
+.+.++|+.++| .+..+.....++.|+.|.|+-|...+-.. +.+|++|++|++..|
T Consensus 18 l~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKN 73 (388)
T ss_pred HHHhhhhcccCC-CccHHHHHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhc
Confidence 345556666666 44555445555666666666665222111 455666666666654
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.73 E-value=0.0027 Score=56.08 Aligned_cols=206 Identities=18% Similarity=0.105 Sum_probs=115.5
Q ss_pred CCccEEEecCCCChhhhhh----hhcCCCCCcEEeccccccc----------cccccccccCccccEEecccCcccccCC
Q 046441 193 PSLKVLDIYGCPKLESIAE----RLDNNTSLETISILCCENL----------KILPSGLHNLRQLQEISIEKCGNLESFP 258 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~l~~~~~~----------~~l~~~~~~~~~L~~L~l~~~~~l~~l~ 258 (465)
..+..+++++|..-+.... .++.-.+|+..++++--.- ..+...+.+||+|+..++++|..-...+
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 7899999999875544333 3566678888888753211 1123456678999999999984333333
Q ss_pred C----CCCCCCCCceEEEecCCCcCccc--------------ccccCCCcccceeeccCCCCCccCC------CCCCCcc
Q 046441 259 E----GGLPCAKLSKLRIYGCERLEALP--------------KGLHNLKSLQELRIGRGVELPSLEE------DGLPTNL 314 (465)
Q Consensus 259 ~----~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~l~~L~~L~l~~~~~~~~~~~------~~~~~~L 314 (465)
+ .++.-..|++|.+.+|. +..+. +-...-|.|+......|. +...+. ...-.+|
T Consensus 110 e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~l 187 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHENL 187 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcCc
Confidence 3 23334578999998874 32211 112234667777776663 222211 0111478
Q ss_pred ceeeecCCccccccccccc-ccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc---
Q 046441 315 HSLEIDGNMEIWKSTIEWG-RGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS--- 390 (465)
Q Consensus 315 ~~L~l~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--- 390 (465)
+++.+.+|..-........ -.+..+++|+.|++..+ .+... +..++......++.|++|.+.+| -+..-..
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN--tft~~--gS~~La~al~~W~~lrEL~lnDC-lls~~G~~~v 262 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN--TFTLE--GSRYLADALCEWNLLRELRLNDC-LLSNEGVKSV 262 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc--chhhh--hHHHHHHHhcccchhhhccccch-hhccccHHHH
Confidence 8888888873322111110 11556788899988886 11111 01111222335567888888887 3332111
Q ss_pred ----cccCCCCcceEEecC
Q 046441 391 ----SIVDLQNLTELYLGD 405 (465)
Q Consensus 391 ----~~~~l~~L~~L~l~~ 405 (465)
.-...|+|+.|-..+
T Consensus 263 ~~~f~e~~~p~l~~L~~~Y 281 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDY 281 (388)
T ss_pred HHHhhhhcCCCccccccch
Confidence 112457777777776
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.0011 Score=58.77 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=76.3
Q ss_pred cccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEEE
Q 046441 24 CRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILE 103 (465)
Q Consensus 24 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 103 (465)
.+.+.|+.-||+. ..+. ....|+.|+.|.|+-| .++++.++..|.+|++|+|..+ .+.++.+..+....|+|+.|.
T Consensus 19 ~~vkKLNcwg~~L-~DIs-ic~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGL-DDIS-ICEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCc-cHHH-HHHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 6788888888876 5443 2447999999999977 7788888888999999999985 488888887778889999999
Q ss_pred ecCCcCcceecCc------cCCCCccEEe
Q 046441 104 IWICCSLTYIAGV------QLPRSLKRLH 126 (465)
Q Consensus 104 l~~~~~l~~~~~~------~~~~~L~~L~ 126 (465)
|..++-....+.. ..+|+|++|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 9887644333322 3357888876
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.88 E-value=0.0015 Score=51.53 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=28.1
Q ss_pred ccccEEecccCcccccCCC-CCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCC
Q 046441 241 RQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGV 300 (465)
Q Consensus 241 ~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 300 (465)
..|+..++++| .++.+|+ ....+|.++.|++++|. +..+|..+..++.|+.|+++.|+
T Consensus 53 ~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 53 YELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred ceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc
Confidence 44444555554 4444443 22223345555555542 44555555555555555555553
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.33 E-value=0.0067 Score=51.31 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=40.5
Q ss_pred CcCcCcccEEEccCCccccccccccccCCCCCccEEEecCCcCcceecCc--cCCCCccEEeeccccCc
Q 046441 67 VALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAGV--QLPRSLKRLHILLCNNI 133 (465)
Q Consensus 67 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~c~~l 133 (465)
+..++.++.|.+.+|..+.+..-..+....++|+.|++++|+.+++.... ..+++|+.|.+.+.+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 33466777777777777666555544444477777777777766654433 33456666666554433
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.04 E-value=0.017 Score=50.87 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=16.7
Q ss_pred cCccccEEecccC--cccccCCCCCCCCCCCceEEEecC
Q 046441 239 NLRQLQEISIEKC--GNLESFPEGGLPCAKLSKLRIYGC 275 (465)
Q Consensus 239 ~~~~L~~L~l~~~--~~l~~l~~~~~~~~~L~~L~l~~~ 275 (465)
.+++|++|.++.| .....++.....+|+|+++++++|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 3455666666555 222222222333345555555554
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.02 E-value=0.031 Score=49.31 Aligned_cols=106 Identities=19% Similarity=0.150 Sum_probs=60.5
Q ss_pred CCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcc-cccccccccccCCCCCccccceEeccCCCCCccc
Q 046441 310 LPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDM-VSFPLEDKRLGTALPLPACLASLMIGNFPNLERL 388 (465)
Q Consensus 310 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 388 (465)
.+..|+.+++.++...+..- +-.+++|+.|.++.+...+ ..+.... ...++|+++++++ |+++.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~------~P~Lp~LkkL~lsdn~~~~~~~l~vl~-------e~~P~l~~l~ls~-Nki~~l 106 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN------FPKLPKLKKLELSDNYRRVSGGLEVLA-------EKAPNLKVLNLSG-NKIKDL 106 (260)
T ss_pred cccchhhhhhhccceeeccc------CCCcchhhhhcccCCcccccccceehh-------hhCCceeEEeecC-Cccccc
Confidence 34567777766665333111 3456788888888751111 1111111 1236888888888 677765
Q ss_pred cc--cccCCCCcceEEecCCCCCCcCCC-----CCCcccccEEeecCCc
Q 046441 389 SS--SIVDLQNLTELYLGDCPKLKYFPE-----KGLPSSLLRLYIDECP 430 (465)
Q Consensus 389 ~~--~~~~l~~L~~L~l~~c~~l~~l~~-----~~~~~~L~~L~l~~c~ 430 (465)
.. ....+.+|..|++.+|.... +.. -.++++|++|+-.++.
T Consensus 107 stl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 107 STLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cccchhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence 43 45566777788888875333 322 1236788887766653
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.42 E-value=0.011 Score=49.96 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=48.4
Q ss_pred CCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCC---CCCCCccceeeecCCcccccccccccccCCCCCCc
Q 046441 266 KLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE---DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSL 342 (465)
Q Consensus 266 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L 342 (465)
.++.++-+++.....--+.+..+++++.|.+.+|........ .+..++|+.|++++|+.+++..-.+ +..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~---L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC---LLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH---HHHhhhh
Confidence 355555555433222223455677777777777765444321 2355778888888887777665554 5667777
Q ss_pred cEEEecC
Q 046441 343 RCLAISG 349 (465)
Q Consensus 343 ~~L~l~~ 349 (465)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 7777665
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.32 E-value=0.0092 Score=47.24 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=47.6
Q ss_pred hcCCCCCcEEeccccccccccccccc-cCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcc
Q 046441 213 LDNNTSLETISILCCENLKILPSGLH-NLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSL 291 (465)
Q Consensus 213 ~~~l~~L~~L~l~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 291 (465)
+.....|...++++|. ...+|+.+. .++-+++|++.+| .+.++|.....++.|+.++++.|+ +...|.-+..+.++
T Consensus 49 l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKL 125 (177)
T ss_pred HhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhH
Confidence 3344455555555532 233444333 3456667777766 566666666666677777777765 44455545556666
Q ss_pred cceeeccC
Q 046441 292 QELRIGRG 299 (465)
Q Consensus 292 ~~L~l~~~ 299 (465)
-.|+..++
T Consensus 126 ~~Lds~~n 133 (177)
T KOG4579|consen 126 DMLDSPEN 133 (177)
T ss_pred HHhcCCCC
Confidence 66665554
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.82 E-value=0.048 Score=28.36 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=11.9
Q ss_pred ccceeecccCCCCcccccccc
Q 046441 25 RLEYLRLRYCEGLVKLPQSSL 45 (465)
Q Consensus 25 ~L~~L~l~~~~~l~~l~~~~~ 45 (465)
+|++|++++|.. +.+|..|+
T Consensus 1 ~L~~Ldls~n~l-~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNL-TSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEE-SEEGTTTT
T ss_pred CccEEECCCCcC-EeCChhhc
Confidence 366777777744 56665544
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.81 E-value=0.4 Score=38.12 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=4.8
Q ss_pred cccCccccEEecc
Q 046441 237 LHNLRQLQEISIE 249 (465)
Q Consensus 237 ~~~~~~L~~L~l~ 249 (465)
+.++++|+.+.+.
T Consensus 31 F~~~~~l~~i~~~ 43 (129)
T PF13306_consen 31 FSNCTSLKSINFP 43 (129)
T ss_dssp TTT-TT-SEEEES
T ss_pred ccccccccccccc
Confidence 3334444444443
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.75 E-value=0.62 Score=37.00 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=33.9
Q ss_pred ccccCccccEEecccCcccccCCC-CCCCCCCCceEEEecCCCcCccc-ccccCCCcccceeeccCCCCCccCC--CCCC
Q 046441 236 GLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYGCERLEALP-KGLHNLKSLQELRIGRGVELPSLEE--DGLP 311 (465)
Q Consensus 236 ~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~ 311 (465)
.+.++++|+.+.+.. .++.+.. .+..+++|+.+.+... +..++ ..+..+++++.+.+.. ....++. ...+
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--ccccccccccccc
Confidence 345566777777663 3455544 3344556777777652 44443 2445555677776654 2222222 1224
Q ss_pred CccceeeecC
Q 046441 312 TNLHSLEIDG 321 (465)
Q Consensus 312 ~~L~~L~l~~ 321 (465)
++++.+.+..
T Consensus 81 ~~l~~i~~~~ 90 (129)
T PF13306_consen 81 TNLKNIDIPS 90 (129)
T ss_dssp TTECEEEETT
T ss_pred ccccccccCc
Confidence 5555555543
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.00 E-value=0.12 Score=24.91 Aligned_cols=10 Identities=40% Similarity=0.451 Sum_probs=4.0
Q ss_pred CcceEEecCC
Q 046441 397 NLTELYLGDC 406 (465)
Q Consensus 397 ~L~~L~l~~c 406 (465)
+|++|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3444444443
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.64 E-value=0.46 Score=25.76 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=7.4
Q ss_pred ccccEEeecCCchHHH
Q 046441 419 SSLLRLYIDECPLIAE 434 (465)
Q Consensus 419 ~~L~~L~l~~c~~l~~ 434 (465)
++|++|++++|+.+++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 3444444444444443
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.22 E-value=1.8 Score=23.25 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=10.3
Q ss_pred CCcceEEecCCCCCCcCCC
Q 046441 396 QNLTELYLGDCPKLKYFPE 414 (465)
Q Consensus 396 ~~L~~L~l~~c~~l~~l~~ 414 (465)
++|+.|++++ +.++.+|.
T Consensus 2 ~~L~~L~L~~-N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSN-NQLSSLPP 19 (26)
T ss_pred CCCCEEECCC-CcCCcCCH
Confidence 4556666666 45665554
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.22 E-value=1.8 Score=23.25 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=10.3
Q ss_pred CCcceEEecCCCCCCcCCC
Q 046441 396 QNLTELYLGDCPKLKYFPE 414 (465)
Q Consensus 396 ~~L~~L~l~~c~~l~~l~~ 414 (465)
++|+.|++++ +.++.+|.
T Consensus 2 ~~L~~L~L~~-N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSN-NQLSSLPP 19 (26)
T ss_pred CCCCEEECCC-CcCCcCCH
Confidence 4556666666 45665554
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.10 E-value=2.6 Score=22.86 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=9.2
Q ss_pred cccceEeccCCCCCcccc
Q 046441 372 ACLASLMIGNFPNLERLS 389 (465)
Q Consensus 372 ~~L~~L~l~~c~~l~~l~ 389 (465)
++|+.|++++ |+|+.+|
T Consensus 2 ~~L~~L~vs~-N~Lt~LP 18 (26)
T smart00364 2 PSLKELNVSN-NQLTSLP 18 (26)
T ss_pred cccceeecCC-CccccCc
Confidence 3455555555 4555555
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.21 E-value=8.3 Score=38.34 Aligned_cols=68 Identities=15% Similarity=0.060 Sum_probs=31.5
Q ss_pred cCCCCcEEEecCCCCCCCCC---CCcC-cCcccEEEccCCccccccccccccCCCCCccEEEecCCcCcceec
Q 046441 46 SLSSLREIEICKCSSLVSFP---EVAL-PSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIA 114 (465)
Q Consensus 46 ~l~~L~~L~l~~~~~l~~~~---~~~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 114 (465)
+.+.+..+++++| .+..+. .+.. .|+|..|+|+++....+...+....+...|++|-+.|++-.+++.
T Consensus 216 n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 216 NFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred CCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchh
Confidence 3455556666655 222222 1111 566666666665222111112112233556777777765444443
No 80
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=49.14 E-value=34 Score=21.13 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=16.8
Q ss_pred CCcceEEecCCCCCCcCCCCCCcccccEEeecC
Q 046441 396 QNLTELYLGDCPKLKYFPEKGLPSSLLRLYIDE 428 (465)
Q Consensus 396 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~ 428 (465)
+++++|.+++ .--..+....++++|++|.+..
T Consensus 12 ~~l~~L~~g~-~fn~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGS-SFNQPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECC-ccCccCCCCccCCCceEEEeeC
Confidence 4555666633 2223344455667777776653
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=47.93 E-value=13 Score=19.28 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=4.8
Q ss_pred CcccEEEccCCc
Q 046441 71 SKLKKIRISSCD 82 (465)
Q Consensus 71 ~~L~~L~l~~~~ 82 (465)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 345555555543
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.77 E-value=13 Score=36.97 Aligned_cols=77 Identities=13% Similarity=0.044 Sum_probs=51.2
Q ss_pred HHHHHHhhhhhcccccceeecccCCCCc--ccccccccCCCCcEEEecCCCC-CCCCCCCcC--cCcccEEEccCCcccc
Q 046441 11 EEKDQQQQLCELSCRLEYLRLRYCEGLV--KLPQSSLSLSSLREIEICKCSS-LVSFPEVAL--PSKLKKIRISSCDALK 85 (465)
Q Consensus 11 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~--l~~L~~L~l~~~~~l~ 85 (465)
.|+-.+.+.++.++.+..+++++|+... .+..-.+..|+|+.|+|++|.. +..-+.+.. ...|++|-+.+++--+
T Consensus 205 ~M~~~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 205 CMAAVLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred hhHHHHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3455567778889999999999997632 3333344679999999999822 222223333 4568899998877444
Q ss_pred cc
Q 046441 86 SL 87 (465)
Q Consensus 86 ~~ 87 (465)
.+
T Consensus 285 tf 286 (585)
T KOG3763|consen 285 TF 286 (585)
T ss_pred ch
Confidence 43
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=40.85 E-value=23 Score=19.18 Aligned_cols=16 Identities=44% Similarity=0.522 Sum_probs=9.3
Q ss_pred CCcceEEecCCCCCCcC
Q 046441 396 QNLTELYLGDCPKLKYF 412 (465)
Q Consensus 396 ~~L~~L~l~~c~~l~~l 412 (465)
.+|+.|++++ +.++.+
T Consensus 2 ~~L~~L~L~~-NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQ-NKIKKI 17 (26)
T ss_pred CccCEEECCC-Ccccee
Confidence 4566666666 455544
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=32.85 E-value=32 Score=18.82 Aligned_cols=13 Identities=23% Similarity=-0.010 Sum_probs=8.4
Q ss_pred cccceeecccCCC
Q 046441 24 CRLEYLRLRYCEG 36 (465)
Q Consensus 24 ~~L~~L~l~~~~~ 36 (465)
++|++|+|++|..
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 4567777776654
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=26.16 E-value=0.75 Score=45.75 Aligned_cols=12 Identities=25% Similarity=0.080 Sum_probs=5.5
Q ss_pred CCCCcceEEecC
Q 046441 394 DLQNLTELYLGD 405 (465)
Q Consensus 394 ~l~~L~~L~l~~ 405 (465)
..+.+++++++.
T Consensus 402 ~~~~l~~~~l~~ 413 (478)
T KOG4308|consen 402 SNEKLEILDLSL 413 (478)
T ss_pred hcchhhhhhhhc
Confidence 344444444444
Done!