Query 046441
Match_columns 465
No_of_seqs 188 out of 2482
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 21:23:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.2E-31 4.2E-36 281.9 18.2 390 23-453 268-765 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.7E-29 2E-33 261.6 27.5 256 193-461 394-717 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1.4E-27 4.8E-32 245.2 31.9 224 193-430 278-511 (606)
4 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-27 4E-32 245.7 29.0 222 193-430 328-556 (606)
5 4eco_A Uncharacterized protein 100.0 3.7E-28 1.3E-32 249.8 24.3 344 39-431 197-599 (636)
6 3t6q_A CD180 antigen; protein- 100.0 1.7E-27 5.7E-32 244.6 29.2 374 23-430 80-558 (606)
7 4eco_A Uncharacterized protein 100.0 2.2E-28 7.5E-33 251.5 21.2 394 24-459 81-598 (636)
8 2z7x_B TOLL-like receptor 1, v 100.0 8.1E-27 2.8E-31 235.0 28.6 358 23-430 20-479 (520)
9 4ecn_A Leucine-rich repeat pro 100.0 5.4E-27 1.8E-31 245.7 26.4 343 40-431 440-839 (876)
10 1o6v_A Internalin A; bacterial 100.0 3.2E-26 1.1E-30 227.2 29.7 342 23-430 45-386 (466)
11 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-26 8.8E-31 235.8 29.6 59 370-430 471-532 (606)
12 3j0a_A TOLL-like receptor 5; m 99.9 4.6E-26 1.6E-30 242.0 28.9 226 193-429 266-536 (844)
13 2z63_A TOLL-like receptor 4, v 99.9 6.2E-26 2.1E-30 231.2 28.5 150 265-430 373-529 (570)
14 2z81_A CD282 antigen, TOLL-lik 99.9 5.1E-26 1.7E-30 230.8 27.2 376 23-430 25-508 (549)
15 4ecn_A Leucine-rich repeat pro 99.9 2.1E-26 7E-31 241.3 23.4 374 24-431 323-818 (876)
16 1ziw_A TOLL-like receptor 3; i 99.9 4.2E-25 1.4E-29 229.8 32.4 103 23-130 72-181 (680)
17 2z63_A TOLL-like receptor 4, v 99.9 4.4E-26 1.5E-30 232.3 24.4 399 23-460 51-530 (570)
18 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.6E-25 5.6E-30 227.4 28.0 152 262-430 350-508 (562)
19 4fmz_A Internalin; leucine ric 99.9 1.9E-25 6.5E-30 213.1 25.8 301 23-406 43-343 (347)
20 1o6v_A Internalin A; bacterial 99.9 2.8E-25 9.6E-30 220.4 27.7 327 22-414 66-392 (466)
21 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-24 4.3E-29 226.2 31.8 233 217-459 222-491 (680)
22 2z81_A CD282 antigen, TOLL-lik 99.9 2.3E-25 8E-30 225.9 22.7 356 22-407 48-508 (549)
23 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-24 7.6E-29 212.5 27.4 314 23-413 41-355 (457)
24 3v47_A TOLL-like receptor 5B a 99.9 1.5E-24 5.1E-29 214.7 26.1 344 22-406 28-405 (455)
25 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-24 4.7E-29 230.6 26.6 224 193-430 290-558 (844)
26 4fmz_A Internalin; leucine ric 99.9 2.7E-24 9.4E-29 205.0 25.0 304 44-430 40-344 (347)
27 1jl5_A Outer protein YOPM; leu 99.9 3.9E-24 1.3E-28 210.6 25.1 311 24-411 34-371 (454)
28 2z7x_B TOLL-like receptor 1, v 99.9 1.8E-24 6.1E-29 217.9 22.9 354 23-407 44-479 (520)
29 3v47_A TOLL-like receptor 5B a 99.9 2.4E-23 8.1E-28 206.1 26.8 357 27-429 13-405 (455)
30 4g8a_A TOLL-like receptor 4; l 99.9 5.4E-23 1.9E-27 212.1 30.3 373 23-429 51-577 (635)
31 1jl5_A Outer protein YOPM; leu 99.9 2.5E-23 8.6E-28 204.8 25.2 321 25-430 72-427 (454)
32 2id5_A Lingo-1, leucine rich r 99.9 6.7E-23 2.3E-27 204.1 25.7 312 51-407 14-331 (477)
33 3o6n_A APL1; leucine-rich repe 99.9 6.2E-23 2.1E-27 198.8 24.4 236 156-431 116-351 (390)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.3E-23 2.8E-27 207.5 25.1 152 238-407 350-508 (562)
35 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-22 4.5E-27 199.8 25.5 307 41-429 35-349 (457)
36 2id5_A Lingo-1, leucine rich r 99.9 4.8E-22 1.7E-26 197.9 28.6 302 38-386 24-333 (477)
37 3oja_B Anopheles plasmodium-re 99.9 4.5E-22 1.6E-26 203.3 24.5 305 70-431 50-357 (597)
38 3o6n_A APL1; leucine-rich repe 99.9 5.5E-22 1.9E-26 192.2 22.6 299 48-406 45-349 (390)
39 3oja_B Anopheles plasmodium-re 99.9 3.4E-21 1.2E-25 196.8 22.5 102 24-130 51-157 (597)
40 1xku_A Decorin; proteoglycan, 99.9 2.3E-20 8E-25 176.4 24.8 239 24-299 31-273 (330)
41 1xku_A Decorin; proteoglycan, 99.9 5.7E-20 2E-24 173.7 26.2 288 72-405 32-328 (330)
42 4fcg_A Uncharacterized protein 99.9 6.6E-21 2.3E-25 179.7 18.9 232 22-299 79-311 (328)
43 4g8a_A TOLL-like receptor 4; l 99.9 1.4E-19 4.9E-24 186.5 27.0 201 193-407 371-578 (635)
44 2ft3_A Biglycan; proteoglycan, 99.8 1.6E-19 5.4E-24 170.8 24.3 222 156-406 101-330 (332)
45 1z7x_W Ribonuclease inhibitor; 99.8 1E-22 3.5E-27 201.9 2.3 379 23-429 2-437 (461)
46 2ft3_A Biglycan; proteoglycan, 99.8 8.6E-20 3E-24 172.6 22.3 266 157-458 54-330 (332)
47 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-20 3.7E-25 177.1 14.5 250 48-327 50-306 (313)
48 4fcg_A Uncharacterized protein 99.8 2.3E-20 8E-25 175.9 16.0 217 194-427 82-309 (328)
49 1ogq_A PGIP-2, polygalacturona 99.8 8.4E-21 2.9E-25 177.9 12.4 250 157-432 50-304 (313)
50 3ogk_B Coronatine-insensitive 99.8 2.4E-21 8.2E-26 198.2 4.8 137 14-166 102-252 (592)
51 3g06_A SSPH2 (leucine-rich rep 99.8 2.8E-18 9.6E-23 174.1 26.2 255 24-350 40-294 (622)
52 3zyj_A Leucine-rich repeat-con 99.8 1.6E-18 5.3E-23 170.5 23.5 223 157-406 64-289 (440)
53 3o53_A Protein LRIM1, AGAP0063 99.8 5.4E-20 1.9E-24 172.8 11.8 250 12-300 22-273 (317)
54 3zyi_A Leucine-rich repeat-con 99.8 2.1E-18 7.1E-23 170.3 23.2 223 157-406 75-300 (452)
55 2z80_A TOLL-like receptor 2, v 99.8 6.4E-19 2.2E-23 168.2 18.8 224 193-430 76-312 (353)
56 3zyj_A Leucine-rich repeat-con 99.8 2.4E-18 8.2E-23 169.2 22.8 222 191-430 62-290 (440)
57 2p1m_B Transport inhibitor res 99.8 4.9E-21 1.7E-25 196.0 3.4 134 19-166 100-244 (594)
58 3ogk_B Coronatine-insensitive 99.8 2E-21 6.7E-26 198.9 -0.1 376 19-430 68-524 (592)
59 3zyi_A Leucine-rich repeat-con 99.8 3.1E-18 1.1E-22 169.0 22.8 222 191-430 73-301 (452)
60 3g06_A SSPH2 (leucine-rich rep 99.8 9.7E-18 3.3E-22 170.2 25.5 255 48-406 40-294 (622)
61 2p1m_B Transport inhibitor res 99.8 2.6E-20 8.9E-25 190.6 3.3 377 22-431 64-518 (594)
62 2z80_A TOLL-like receptor 2, v 99.8 2.1E-18 7.3E-23 164.5 15.9 201 193-407 100-312 (353)
63 3oja_A Leucine-rich immune mol 99.8 1.7E-18 5.8E-23 172.0 14.3 248 12-297 22-270 (487)
64 2z66_A Variable lymphocyte rec 99.8 1.1E-17 3.9E-22 156.2 18.9 242 27-324 10-260 (306)
65 2z66_A Variable lymphocyte rec 99.8 2.3E-17 7.7E-22 154.1 20.7 242 52-350 11-258 (306)
66 1ozn_A Reticulon 4 receptor; N 99.8 4.2E-17 1.4E-21 150.7 20.5 202 191-407 30-236 (285)
67 1z7x_W Ribonuclease inhibitor; 99.8 5.2E-20 1.8E-24 182.3 0.8 349 22-406 26-437 (461)
68 1ozn_A Reticulon 4 receptor; N 99.8 9.9E-18 3.4E-22 154.9 15.7 174 193-381 56-234 (285)
69 3o53_A Protein LRIM1, AGAP0063 99.8 1.1E-17 3.9E-22 156.9 15.3 212 193-430 34-248 (317)
70 3oja_A Leucine-rich immune mol 99.7 3E-17 1E-21 163.0 16.7 215 193-432 34-250 (487)
71 2xwt_C Thyrotropin receptor; s 99.7 4.2E-17 1.4E-21 146.5 15.5 204 191-431 29-238 (239)
72 1wwl_A Monocyte differentiatio 99.7 5.3E-18 1.8E-22 158.8 5.8 199 215-429 93-306 (312)
73 1wwl_A Monocyte differentiatio 99.7 1.3E-17 4.6E-22 156.0 8.5 227 159-411 65-310 (312)
74 2xwt_C Thyrotropin receptor; s 99.7 4.9E-16 1.7E-20 139.5 16.5 152 157-323 31-190 (239)
75 1p9a_G Platelet glycoprotein I 99.7 1.3E-15 4.3E-20 140.8 17.5 193 156-381 9-204 (290)
76 2z62_A TOLL-like receptor 4, v 99.7 9.2E-16 3.2E-20 140.9 15.1 199 191-406 26-234 (276)
77 2o6q_A Variable lymphocyte rec 99.7 3.5E-15 1.2E-19 136.5 18.7 176 193-406 37-215 (270)
78 4ay9_X Follicle-stimulating ho 99.7 3.2E-15 1.1E-19 142.1 19.2 220 157-405 30-255 (350)
79 4ay9_X Follicle-stimulating ho 99.7 4.4E-15 1.5E-19 141.2 20.0 221 191-428 28-255 (350)
80 2z62_A TOLL-like receptor 4, v 99.7 2E-15 6.7E-20 138.7 16.8 206 206-428 19-233 (276)
81 1p9a_G Platelet glycoprotein I 99.7 6.9E-15 2.4E-19 135.8 20.0 87 44-136 6-92 (290)
82 3rfs_A Internalin B, repeat mo 99.6 6.6E-16 2.3E-20 141.5 11.9 98 24-129 19-118 (272)
83 1h6u_A Internalin H; cell adhe 99.6 4.2E-15 1.4E-19 138.6 17.5 195 46-282 39-233 (308)
84 1h6u_A Internalin H; cell adhe 99.6 1.9E-15 6.6E-20 140.9 15.0 194 193-414 41-234 (308)
85 2ast_B S-phase kinase-associat 99.6 3.8E-16 1.3E-20 147.8 9.8 224 24-275 47-282 (336)
86 4glp_A Monocyte differentiatio 99.6 1.4E-15 4.8E-20 142.2 13.5 225 194-430 65-305 (310)
87 4glp_A Monocyte differentiatio 99.6 8.3E-16 2.8E-20 143.7 11.7 202 193-411 91-308 (310)
88 2o6q_A Variable lymphocyte rec 99.6 1.6E-14 5.5E-19 132.1 19.4 195 120-350 16-215 (270)
89 2ast_B S-phase kinase-associat 99.6 1.9E-16 6.7E-21 149.8 4.4 131 193-323 118-258 (336)
90 3rfs_A Internalin B, repeat mo 99.6 3.7E-14 1.3E-18 129.8 15.9 123 193-323 109-233 (272)
91 2ca6_A RAN GTPase-activating p 99.5 3.6E-16 1.2E-20 151.0 -0.1 208 193-411 60-317 (386)
92 3m19_A Variable lymphocyte rec 99.5 2.5E-13 8.7E-18 122.7 16.5 171 158-350 15-189 (251)
93 3m19_A Variable lymphocyte rec 99.5 5.6E-13 1.9E-17 120.4 17.4 170 218-405 15-188 (251)
94 1h6t_A Internalin B; cell adhe 99.5 1.4E-13 4.7E-18 127.2 13.1 176 213-414 42-217 (291)
95 3goz_A Leucine-rich repeat-con 99.5 2.7E-14 9.3E-19 136.4 6.5 134 158-299 139-294 (362)
96 2ca6_A RAN GTPase-activating p 99.5 4.7E-15 1.6E-19 143.1 0.6 226 193-430 32-314 (386)
97 1h6t_A Internalin B; cell adhe 99.5 2.7E-13 9.4E-18 125.2 11.8 171 193-389 46-216 (291)
98 4ezg_A Putative uncharacterize 99.5 3E-13 1E-17 117.3 10.9 148 193-350 44-191 (197)
99 3goz_A Leucine-rich repeat-con 99.5 1.8E-14 6E-19 137.7 3.2 228 190-430 19-295 (362)
100 4ezg_A Putative uncharacterize 99.4 3.7E-13 1.2E-17 116.8 10.2 150 156-323 43-192 (197)
101 3cvr_A Invasion plasmid antige 99.4 2.2E-12 7.5E-17 129.3 16.3 142 240-406 99-240 (571)
102 3cvr_A Invasion plasmid antige 99.4 2.4E-12 8.1E-17 129.1 15.5 176 217-431 59-242 (571)
103 1m9s_A Internalin B; cell inva 99.4 1.7E-12 5.7E-17 131.6 14.1 176 213-414 39-214 (605)
104 1m9s_A Internalin B; cell inva 99.4 4.6E-12 1.6E-16 128.4 16.1 168 23-229 42-209 (605)
105 1xeu_A Internalin C; cellular 99.3 1.1E-12 3.9E-17 119.1 8.0 141 194-350 20-160 (263)
106 2o6s_A Variable lymphocyte rec 99.3 1.7E-11 5.9E-16 107.2 13.4 107 213-322 48-158 (208)
107 1xeu_A Internalin C; cellular 99.3 3.2E-12 1.1E-16 116.1 8.8 172 216-414 18-189 (263)
108 2v9t_B SLIT homolog 2 protein 99.3 2.3E-11 8E-16 107.3 14.1 130 191-323 30-163 (220)
109 2o6s_A Variable lymphocyte rec 99.3 2.7E-11 9.3E-16 105.9 12.1 127 217-350 28-158 (208)
110 2v9t_B SLIT homolog 2 protein 99.3 5.8E-11 2E-15 104.7 14.1 131 157-300 32-163 (220)
111 3e6j_A Variable lymphocyte rec 99.3 6.5E-11 2.2E-15 105.1 14.2 148 157-323 19-170 (229)
112 2v70_A SLIT-2, SLIT homolog 2 99.3 6.6E-11 2.3E-15 104.3 13.4 108 214-323 54-164 (220)
113 3e6j_A Variable lymphocyte rec 99.3 6.6E-11 2.3E-15 105.0 13.4 129 157-300 40-170 (229)
114 2xot_A Amphoterin-induced prot 99.2 3.5E-11 1.2E-15 114.7 11.1 152 192-350 38-199 (361)
115 1dce_A Protein (RAB geranylger 99.2 1.4E-13 4.9E-18 138.5 -5.8 197 193-425 349-566 (567)
116 2v70_A SLIT-2, SLIT homolog 2 99.2 1.1E-10 3.8E-15 102.9 12.5 127 218-350 33-163 (220)
117 2ell_A Acidic leucine-rich nuc 99.2 5.7E-11 1.9E-15 100.0 10.0 132 215-350 22-157 (168)
118 2xot_A Amphoterin-induced prot 99.2 9.7E-11 3.3E-15 111.6 12.7 104 193-299 88-199 (361)
119 1dce_A Protein (RAB geranylger 99.1 9.1E-13 3.1E-17 132.7 -5.1 122 218-346 442-566 (567)
120 2ell_A Acidic leucine-rich nuc 99.1 1.5E-10 5.1E-15 97.4 9.4 68 338-414 93-164 (168)
121 3sb4_A Hypothetical leucine ri 99.1 7.4E-10 2.5E-14 104.1 14.8 12 193-204 49-60 (329)
122 2je0_A Acidic leucine-rich nuc 99.1 8.5E-11 2.9E-15 96.8 6.5 81 217-299 17-98 (149)
123 3sb4_A Hypothetical leucine ri 99.1 2.4E-09 8.2E-14 100.5 17.0 103 193-299 202-307 (329)
124 2je0_A Acidic leucine-rich nuc 99.1 2.2E-10 7.5E-15 94.3 7.2 34 241-275 17-52 (149)
125 1w8a_A SLIT protein; signaling 99.1 8.6E-10 2.9E-14 94.9 10.7 125 159-300 10-137 (192)
126 2wfh_A SLIT homolog 2 protein 99.0 1.6E-09 5.6E-14 93.2 12.0 105 192-299 30-136 (193)
127 1a9n_A U2A', U2A'; complex (nu 99.0 4E-10 1.4E-14 95.6 5.4 102 193-299 19-123 (176)
128 1a9n_A U2A', U2A'; complex (nu 98.9 1.3E-09 4.5E-14 92.3 7.4 86 336-431 60-152 (176)
129 4b8c_D Glucose-repressible alc 98.9 5E-10 1.7E-14 116.3 5.0 146 156-322 223-369 (727)
130 4fdw_A Leucine rich hypothetic 98.9 1.7E-07 5.8E-12 90.1 21.4 210 194-428 158-379 (401)
131 2wfh_A SLIT homolog 2 protein 98.9 1.1E-08 3.9E-13 87.9 11.2 122 196-323 13-137 (193)
132 1w8a_A SLIT protein; signaling 98.9 8.6E-09 2.9E-13 88.6 10.4 123 196-323 11-137 (192)
133 2o6r_A Variable lymphocyte rec 98.9 1.6E-08 5.4E-13 85.7 11.9 104 193-299 28-134 (177)
134 4fs7_A Uncharacterized protein 98.9 5.9E-07 2E-11 86.4 24.0 206 193-428 162-375 (394)
135 4fdw_A Leucine rich hypothetic 98.8 8.9E-07 3.1E-11 85.0 23.1 190 193-405 180-379 (401)
136 2o6r_A Variable lymphocyte rec 98.8 5.2E-08 1.8E-12 82.5 11.9 122 196-323 10-135 (177)
137 4b8c_D Glucose-repressible alc 98.8 1.1E-08 3.9E-13 106.1 8.1 104 193-300 224-327 (727)
138 1ds9_A Outer arm dynein; leuci 98.7 2E-10 6.7E-15 99.5 -4.5 124 194-323 24-151 (198)
139 1ds9_A Outer arm dynein; leuci 98.7 3.3E-10 1.1E-14 98.1 -3.8 132 211-350 12-150 (198)
140 3g39_A Variable lymphocyte rec 98.6 1E-07 3.4E-12 80.1 8.8 81 193-275 30-112 (170)
141 4fs7_A Uncharacterized protein 98.6 1E-06 3.4E-11 84.8 17.0 213 212-458 157-376 (394)
142 2r9u_A Variable lymphocyte rec 98.6 1.2E-07 4.1E-12 79.9 8.8 80 218-299 34-115 (174)
143 3g39_A Variable lymphocyte rec 98.6 3E-07 1E-11 77.1 9.7 101 195-300 11-113 (170)
144 2r9u_A Variable lymphocyte rec 98.5 4.2E-07 1.4E-11 76.5 9.9 100 159-276 14-116 (174)
145 2ra8_A Uncharacterized protein 98.4 9.8E-07 3.3E-11 83.3 8.8 86 156-251 251-340 (362)
146 3e4g_A ATP synthase subunit S, 98.3 2.8E-07 9.7E-12 76.5 3.0 97 39-136 52-155 (176)
147 3e4g_A ATP synthase subunit S, 98.3 3.5E-07 1.2E-11 76.0 3.2 88 71-172 61-154 (176)
148 4gt6_A Cell surface protein; l 98.3 7E-05 2.4E-09 71.8 19.6 81 336-429 284-367 (394)
149 3un9_A NLR family member X1; l 98.2 7.7E-08 2.6E-12 91.5 -2.1 35 265-299 155-193 (372)
150 3un9_A NLR family member X1; l 98.2 2E-07 6.8E-12 88.7 0.5 39 213-251 207-249 (372)
151 4gt6_A Cell surface protein; l 98.1 0.0011 3.6E-08 63.5 25.1 104 284-405 260-366 (394)
152 2ifg_A High affinity nerve gro 98.1 4.7E-06 1.6E-10 78.5 8.3 87 189-277 28-115 (347)
153 2ra8_A Uncharacterized protein 98.1 1.7E-06 5.7E-11 81.7 4.4 140 238-386 169-320 (362)
154 2ifg_A High affinity nerve gro 98.0 1.2E-05 4.1E-10 75.7 9.2 101 196-300 11-114 (347)
155 4h09_A Hypothetical leucine ri 98.0 0.002 6.7E-08 61.2 23.7 56 43-104 41-98 (379)
156 4h09_A Hypothetical leucine ri 98.0 0.0033 1.1E-07 59.7 24.4 287 69-414 44-349 (379)
157 3rw6_A Nuclear RNA export fact 97.2 0.0004 1.4E-08 62.1 6.0 37 22-58 168-206 (267)
158 1io0_A Tropomodulin; LRR prote 97.2 0.00015 5E-09 61.4 2.5 59 193-251 36-103 (185)
159 1io0_A Tropomodulin; LRR prote 97.1 0.00016 5.5E-09 61.2 1.8 89 156-251 35-133 (185)
160 3rw6_A Nuclear RNA export fact 96.7 0.00062 2.1E-08 60.8 2.6 80 214-295 167-257 (267)
161 3rfe_A Platelet glycoprotein I 92.4 0.21 7.3E-06 38.9 5.6 36 370-406 29-65 (130)
162 3rfe_A Platelet glycoprotein I 92.2 0.24 8.3E-06 38.5 5.7 33 341-381 32-64 (130)
163 1pgv_A TMD-1, tropomodulin TMD 92.0 0.1 3.5E-06 43.9 3.5 59 193-251 41-108 (197)
164 1pgv_A TMD-1, tropomodulin TMD 88.5 0.37 1.3E-05 40.5 3.9 88 157-251 41-136 (197)
165 2lz0_A Uncharacterized protein 29.9 66 0.0022 23.1 4.3 34 370-405 18-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.2e-31 Score=281.88 Aligned_cols=390 Identities=18% Similarity=0.154 Sum_probs=225.3
Q ss_pred ccccceeecccCCCCccccccccc-CCCCcEEEecCCCCCCCCC-CCcCcCcccEEEccCCccccccccccccCCCCCcc
Q 046441 23 SCRLEYLRLRYCEGLVKLPQSSLS-LSSLREIEICKCSSLVSFP-EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLE 100 (465)
Q Consensus 23 ~~~L~~L~l~~~~~l~~l~~~~~~-l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 100 (465)
+++|++|++++|.....+|..+.. +++|++|++++|..-..+| .++.+++|++|++++|.....++.... ...++|+
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l-~~l~~L~ 346 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL-LKMRGLK 346 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHH-TTCTTCC
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHH-hcCCCCC
Confidence 456666666666553355555444 3666666666653222333 344456666666666542224443211 2335555
Q ss_pred EEEecCCcCcc-eecCc-cC---------------------------CCCccEEeeccccCccccccccccccCCCCCCc
Q 046441 101 ILEIWICCSLT-YIAGV-QL---------------------------PRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSS 151 (465)
Q Consensus 101 ~L~l~~~~~l~-~~~~~-~~---------------------------~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 151 (465)
+|++++|. +. .++.. .. +++|+.|++.+|.-...+ |..+..
T Consensus 347 ~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--p~~l~~------- 416 (768)
T 3rgz_A 347 VLDLSFNE-FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI--PPTLSN------- 416 (768)
T ss_dssp EEECCSSE-EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC--CGGGGG-------
T ss_pred EEeCcCCc-cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc--CHHHhc-------
Confidence 55555542 22 22221 11 234555555443222222 333333
Q ss_pred hhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEecccccccc
Q 046441 152 RRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLK 231 (465)
Q Consensus 152 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~ 231 (465)
+++|++|++++ +.++. .+|..+ ..+ ++|+.|++.+|...+.+|..+..+++|++|++++|...+
T Consensus 417 ----l~~L~~L~Ls~-N~l~~-----~~p~~l-----~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 417 ----CSELVSLHLSF-NYLSG-----TIPSSL-----GSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp ----CTTCCEEECCS-SEEES-----CCCGGG-----GGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ----CCCCCEEECcC-CcccC-----cccHHH-----hcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence 56677777766 34432 222233 333 677777777766555667777777788888888777666
Q ss_pred ccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCC----
Q 046441 232 ILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE---- 307 (465)
Q Consensus 232 ~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---- 307 (465)
.+|..+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..++.+++|++|++++|.....+|.
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 6777777778888888887754446666666677788888888776667777777778888888777642222211
Q ss_pred -------------------------------------------------------------------CCCCCccceeeec
Q 046441 308 -------------------------------------------------------------------DGLPTNLHSLEID 320 (465)
Q Consensus 308 -------------------------------------------------------------------~~~~~~L~~L~l~ 320 (465)
.+.+++|++|+++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 1223567778887
Q ss_pred CCcccccccccccccCCCCCCccEEEecCCCCccc-ccccccccccCCCCCccccceEeccCCCCCc-cccccccCCCCc
Q 046441 321 GNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMV-SFPLEDKRLGTALPLPACLASLMIGNFPNLE-RLSSSIVDLQNL 398 (465)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L 398 (465)
+|. +....+.. +..+++|+.|++++| .+. .+|... ..+++|+.|++++ ++++ .+|..+..++.|
T Consensus 641 ~N~-l~g~ip~~---l~~l~~L~~L~Ls~N--~l~g~ip~~l-------~~L~~L~~LdLs~-N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 641 YNM-LSGYIPKE---IGSMPYLFILNLGHN--DISGSIPDEV-------GDLRGLNILDLSS-NKLDGRIPQAMSALTML 706 (768)
T ss_dssp SSC-CBSCCCGG---GGGCTTCCEEECCSS--CCCSCCCGGG-------GGCTTCCEEECCS-SCCEECCCGGGGGCCCC
T ss_pred CCc-ccccCCHH---HhccccCCEEeCcCC--ccCCCCChHH-------hCCCCCCEEECCC-CcccCcCChHHhCCCCC
Confidence 776 33333322 567788888888886 443 455544 3567888888888 5666 667788888888
Q ss_pred ceEEecCCCCCCcCCCCCCcccccEEeecCCchHH----HHHhhcCCCcccccCCcceE
Q 046441 399 TELYLGDCPKLKYFPEKGLPSSLLRLYIDECPLIA----EKCRKDGGQYWDLLTHIPSV 453 (465)
Q Consensus 399 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~----~~~~~~~~~~~~~~~~~~~~ 453 (465)
++|++++|+--..+|....+.++....+.+|+.|- ..|....+++|+++.|++++
T Consensus 707 ~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 707 TEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp SEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-------------
T ss_pred CEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence 88888885544457776666667666676765332 25778888999999999974
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=5.7e-29 Score=261.61 Aligned_cols=256 Identities=17% Similarity=0.109 Sum_probs=183.3
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRI 272 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 272 (465)
++|++|++.+|...+.+|..+..+++|++|++++|...+.+|..+..+++|++|++++|.....+|..+..+++|+.|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 57888888887655567788888999999999998777777888888999999999998655567777777889999999
Q ss_pred ecCCCcCcccccccCCCcccceeeccCCCCCccCC-CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCC
Q 046441 273 YGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCD 351 (465)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 351 (465)
++|.....+|..++.+++|++|++++|.....+|. .+.+++|++|++++|...... +.. +..+++|++|++++|
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~---l~~l~~L~~L~Ls~N- 548 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI-PAE---LGDCRSLIWLDLNTN- 548 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC-CGG---GGGCTTCCEEECCSS-
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC-CHH---HcCCCCCCEEECCCC-
Confidence 99887767888888999999999999865555554 366789999999999843333 322 668899999999987
Q ss_pred Cccc-ccccccc---------------------------------------------------------------cccCC
Q 046441 352 DDMV-SFPLEDK---------------------------------------------------------------RLGTA 367 (465)
Q Consensus 352 ~~l~-~~~~~~~---------------------------------------------------------------~~~~~ 367 (465)
.+. .+|.... .....
T Consensus 549 -~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 549 -LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp -EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred -ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 222 2322110 01112
Q ss_pred CCCccccceEeccCCCCCc-cccccccCCCCcceEEecCCCCCC-cCCCC-CCcccccEEeecCCchHHHHHhhcCCCcc
Q 046441 368 LPLPACLASLMIGNFPNLE-RLSSSIVDLQNLTELYLGDCPKLK-YFPEK-GLPSSLLRLYIDECPLIAEKCRKDGGQYW 444 (465)
Q Consensus 368 ~~~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~-~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 444 (465)
+...++|+.|++++ ++++ .+|..+.+++.|+.|++++| .++ .+|.. +-+++|++|++++|.-- +.....+
T Consensus 628 ~~~l~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~l~-----g~ip~~l 700 (768)
T 3rgz_A 628 FDNNGSMMFLDMSY-NMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLD-----GRIPQAM 700 (768)
T ss_dssp CSSSBCCCEEECCS-SCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCE-----ECCCGGG
T ss_pred hhccccccEEECcC-CcccccCCHHHhccccCCEEeCcCC-ccCCCCChHHhCCCCCCEEECCCCccc-----CcCChHH
Confidence 33456788889888 4666 67778888888888888885 454 56653 23678888888887431 1122345
Q ss_pred cccCCcceEeecCchhh
Q 046441 445 DLLTHIPSVLIDLAKEE 461 (465)
Q Consensus 445 ~~~~~~~~~~~~~~~~~ 461 (465)
..+..+..+.+..+...
T Consensus 701 ~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 701 SALTMLTEIDLSNNNLS 717 (768)
T ss_dssp GGCCCCSEEECCSSEEE
T ss_pred hCCCCCCEEECcCCccc
Confidence 55666666666665543
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.4e-27 Score=245.18 Aligned_cols=224 Identities=16% Similarity=0.104 Sum_probs=134.0
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCceEE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLR 271 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 271 (465)
++|++|++++|. +..+|..+..+++|++|++++|......+..+..+++|++|++++|.....++. .+..+++|+.|+
T Consensus 278 ~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 278 SGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred cCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 567777777653 556666666677777777777655544455666667777777776644334443 345566777777
Q ss_pred EecCCCcCcc--cccccCCCcccceeeccCCCCCccCC-CCCCCccceeeecCCcccccccccccccCCCCCCccEEEec
Q 046441 272 IYGCERLEAL--PKGLHNLKSLQELRIGRGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAIS 348 (465)
Q Consensus 272 l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 348 (465)
+++|...... +..++.+++|++|++++|......+. ...+++|++|++++|.......... +..+++|++|+++
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP---FQNLHLLKVLNLS 433 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT---TTTCTTCCEEECT
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh---hhCcccCCEEECC
Confidence 7776533222 44566677777777777643222222 2455677777777776332222221 5566777777777
Q ss_pred CCCCcccccccccccccCCCCCccccceEeccCCCCCccc--c--ccccCCCCcceEEecCCCCCCcCCCCC--Cccccc
Q 046441 349 GCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERL--S--SSIVDLQNLTELYLGDCPKLKYFPEKG--LPSSLL 422 (465)
Q Consensus 349 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l--~--~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~ 422 (465)
+| .+...+.. .+..+++|++|++++ ++++.. + ..+..+++|++|++++| .++.++... .+++|+
T Consensus 434 ~n--~l~~~~~~------~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 434 HS--LLDISSEQ------LFDGLPALQHLNLQG-NHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp TC--CCBTTCTT------TTTTCTTCCEEECTT-CBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred CC--ccCCcCHH------HHhCCCCCCEEECCC-CCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCC
Confidence 76 33332221 123466788888887 355542 2 25667788888888884 566654322 257888
Q ss_pred EEeecCCc
Q 046441 423 RLYIDECP 430 (465)
Q Consensus 423 ~L~l~~c~ 430 (465)
+|++++|.
T Consensus 504 ~L~Ls~N~ 511 (606)
T 3t6q_A 504 HVDLSHNR 511 (606)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 88888774
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.2e-27 Score=245.73 Aligned_cols=222 Identities=17% Similarity=0.067 Sum_probs=156.0
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccc--cccccccCccccEEecccCcccccCCCCCCCCCCCceE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKI--LPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKL 270 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 270 (465)
++|++|++.+|.....+ .+..+++|++|++++|..... .+..+..+++|++|++++| .+..++..+..+++|+.|
T Consensus 328 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHL 404 (606)
T ss_dssp SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEE
T ss_pred CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCee
Confidence 45566666655433332 345667777777776654332 2556667788888888887 466677667777888999
Q ss_pred EEecCCCcCccc-ccccCCCcccceeeccCCCCCccCC-CCCCCccceeeecCCcccccccccccccCCCCCCccEEEec
Q 046441 271 RIYGCERLEALP-KGLHNLKSLQELRIGRGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAIS 348 (465)
Q Consensus 271 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 348 (465)
++++|......+ ..+..+++|++|++++|......+. .+.+++|++|++++|.......+.. +..+++|++|+++
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~Ls 481 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV---FANTTNLTFLDLS 481 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECT
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh---hccCCCCCEEECC
Confidence 988886554444 4677888999999998864443433 4667899999999987443233333 6788999999999
Q ss_pred CCCCcccccccccccccCCCCCccccceEeccCCCCCccc-cccccCCCCcceEEecCCCCCCcCCCC--CCcccccEEe
Q 046441 349 GCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERL-SSSIVDLQNLTELYLGDCPKLKYFPEK--GLPSSLLRLY 425 (465)
Q Consensus 349 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~ 425 (465)
+| .+..++... +..+++|++|+++++ +++.+ |..+..+++|++|++++| .++.+|.. .++++|++|+
T Consensus 482 ~n--~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 482 KC--QLEQISWGV------FDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFN 551 (606)
T ss_dssp TS--CCCEECTTT------TTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEE
T ss_pred CC--cCCccChhh------hcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEE
Confidence 97 555543321 246789999999994 77776 568889999999999995 68888874 2234699999
Q ss_pred ecCCc
Q 046441 426 IDECP 430 (465)
Q Consensus 426 l~~c~ 430 (465)
+++++
T Consensus 552 l~~N~ 556 (606)
T 3vq2_A 552 LTNNS 556 (606)
T ss_dssp CCSCC
T ss_pred ccCCC
Confidence 98865
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=3.7e-28 Score=249.84 Aligned_cols=344 Identities=16% Similarity=0.183 Sum_probs=260.7
Q ss_pred ccccccccCCCCcEEEecCCCCCCC------------------CC-CCc--CcCcccEEEccCCccccccccccccCCCC
Q 046441 39 KLPQSSLSLSSLREIEICKCSSLVS------------------FP-EVA--LPSKLKKIRISSCDALKSLPEAWMCDTNS 97 (465)
Q Consensus 39 ~l~~~~~~l~~L~~L~l~~~~~l~~------------------~~-~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 97 (465)
.+|..++++++|++|++++|. +.. +| .++ .+++|++|++++|.....+|..+ ...+
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l--~~l~ 273 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL--KALP 273 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT--TTCS
T ss_pred cCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH--hcCC
Confidence 477889999999999999984 666 77 566 79999999999987666777653 3458
Q ss_pred CccEEEecCCcCcce--ecCc-cC------CCCccEEeeccccCcccccccc--ccccCCCCCCchhhhcccCCeeeccC
Q 046441 98 SLEILEIWICCSLTY--IAGV-QL------PRSLKRLHILLCNNIRTLTVEE--GIQCSNSSSSSRRYISSLLEHLEIGN 166 (465)
Q Consensus 98 ~L~~L~l~~~~~l~~--~~~~-~~------~~~L~~L~l~~c~~l~~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~ 166 (465)
+|++|+++++..++. +|.. .. +++|+.|+++++ .++.+ |. .+.. +++|++|++++
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~i--p~~~~l~~-----------l~~L~~L~L~~ 339 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTF--PVETSLQK-----------MKKLGMLECLY 339 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSC--CCHHHHTT-----------CTTCCEEECCS
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCcc--Cchhhhcc-----------CCCCCEEeCcC
Confidence 999999999853553 5433 22 389999999986 56666 76 5665 78899999998
Q ss_pred CCCcc-ccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCC-CcEEeccccccccccccccccCc--c
Q 046441 167 CRSLT-CIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTS-LETISILCCENLKILPSGLHNLR--Q 242 (465)
Q Consensus 167 c~~l~-~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~-L~~L~l~~~~~~~~l~~~~~~~~--~ 242 (465)
+.++ . ++ .+ ..+ ++|++|++++|. +..+|..+..+++ |++|++++|... .+|..+...+ +
T Consensus 340 -N~l~g~-ip------~~-----~~l-~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 403 (636)
T 4eco_A 340 -NQLEGK-LP------AF-----GSE-IKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403 (636)
T ss_dssp -CCCEEE-CC------CC-----EEE-EEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred -CcCccc-hh------hh-----CCC-CCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence 5665 3 33 22 333 789999999975 6688888999999 999999998755 7887776644 8
Q ss_pred ccEEecccCcccccCCCCCC-------CCCCCceEEEecCCCcCcccccc-cCCCcccceeeccCCCCCccCCCC-C---
Q 046441 243 LQEISIEKCGNLESFPEGGL-------PCAKLSKLRIYGCERLEALPKGL-HNLKSLQELRIGRGVELPSLEEDG-L--- 310 (465)
Q Consensus 243 L~~L~l~~~~~l~~l~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~-~--- 310 (465)
|++|++++|.....+|..+. .+++|+.|++++|. +..+|..+ ..+++|++|++++|. +..++... .
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~ 481 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDEN 481 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETT
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhcccc
Confidence 99999999955454554444 56799999999986 45676544 568999999999985 44665421 1
Q ss_pred -----CCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccC----
Q 046441 311 -----PTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGN---- 381 (465)
Q Consensus 311 -----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~---- 381 (465)
+++|++|++++|.. ........ ...+++|++|++++| .+..+|... ..+++|++|++++
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l-~~lp~~~~--~~~l~~L~~L~Ls~N--~l~~ip~~~-------~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKL-TKLSDDFR--ATTLPYLVGIDLSYN--SFSKFPTQP-------LNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp EECTTGGGCCEEECCSSCC-CBCCGGGS--TTTCTTCCEEECCSS--CCSSCCCGG-------GGCSSCCEEECCSCBCT
T ss_pred ccccccCCccEEECcCCcC-CccChhhh--hccCCCcCEEECCCC--CCCCcChhh-------hcCCCCCEEECCCCccc
Confidence 12899999999984 44333321 138899999999998 666677654 2578999999964
Q ss_pred --CCCCccccccccCCCCcceEEecCCCCCCcCCCCCCcccccEEeecCCch
Q 046441 382 --FPNLERLSSSIVDLQNLTELYLGDCPKLKYFPEKGLPSSLLRLYIDECPL 431 (465)
Q Consensus 382 --c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~ 431 (465)
+.-...+|..+..+++|++|++++| .++.+|.. +.++|++|++++|+.
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK-ITPNISVLDIKDNPN 599 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCTTCCEEECCSCTT
T ss_pred ccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh-HhCcCCEEECcCCCC
Confidence 2224567878899999999999994 67889886 448999999999853
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.7e-27 Score=244.59 Aligned_cols=374 Identities=17% Similarity=0.117 Sum_probs=204.3
Q ss_pred ccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCC--CCcCcCcccEEEccCCccccccccccccCCCCCcc
Q 046441 23 SCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLE 100 (465)
Q Consensus 23 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 100 (465)
+++|++|++++|......|..++.+++|++|++++| .+..++ +++.+++|++|+++++. +..++.... ...++|+
T Consensus 80 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~ 156 (606)
T 3t6q_A 80 QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKG-FPTEKLK 156 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTT-CCCTTCC
T ss_pred ccccCeeeCCCCcccccChhhhcccccccEeecccc-CcccCCcchhccCCcccEEECCCCc-ccccCcccc-cCCcccC
Confidence 478999999998874555778888999999999887 455542 46668888888888865 555432211 2357788
Q ss_pred EEEecCCcCcceecCc--cCCCCcc--EEeeccccCccccccccccc---------------------------------
Q 046441 101 ILEIWICCSLTYIAGV--QLPRSLK--RLHILLCNNIRTLTVEEGIQ--------------------------------- 143 (465)
Q Consensus 101 ~L~l~~~~~l~~~~~~--~~~~~L~--~L~l~~c~~l~~~~~~~~~~--------------------------------- 143 (465)
.|+++++ .+..++.. ..+++|+ .|+++++. ++.+ +....
T Consensus 157 ~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~-l~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~ 232 (606)
T 3t6q_A 157 VLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGND-IAGI--EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232 (606)
T ss_dssp EEECCSS-CCCEECHHHHHTTTTCCSEEEECTTCC-CCEE--CTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEEC
T ss_pred EEEcccC-cccccChhhhhhhcccceeEEecCCCc-cCcc--ChhHhhhccccccccCCchhHHHHhhhccccchhheec
Confidence 8888776 45444322 3344555 44444431 1111 10000
Q ss_pred --------------------------------cCCCCCCchhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCC
Q 046441 144 --------------------------------CSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNL 191 (465)
Q Consensus 144 --------------------------------~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~ 191 (465)
............+++|++|++++ +.++. ++. .+ ..+
T Consensus 233 ~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~-lp~-----~l-----~~l 300 (606)
T 3t6q_A 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA-THLSE-LPS-----GL-----VGL 300 (606)
T ss_dssp CCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTT-SCCSC-CCS-----SC-----CSC
T ss_pred hhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccC-CccCC-CCh-----hh-----ccc
Confidence 00000011123368899999998 45654 332 22 334
Q ss_pred CCCccEEEecCCCChhhhhhhhcCCCCCcEEecccccccccccc-ccccCccccEEecccCcccccC---CCCCCCCCCC
Q 046441 192 PPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPS-GLHNLRQLQEISIEKCGNLESF---PEGGLPCAKL 267 (465)
Q Consensus 192 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~l---~~~~~~~~~L 267 (465)
++|++|++++|......+..+..+++|++|++++|.....++. .+..+++|++|++++| .+... +..+..+++|
T Consensus 301 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L 378 (606)
T 3t6q_A 301 -STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHL 378 (606)
T ss_dssp -TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTC
T ss_pred -ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC-ccccccCcchhcccCCCC
Confidence 6788888887653333455677777777777777665544433 3566677777777766 33332 3344555666
Q ss_pred ceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCCCCccEE
Q 046441 268 SKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCL 345 (465)
Q Consensus 268 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L 345 (465)
++|++++|......+..+..+++|++|++++|......+. ...+++|++|++++|.. ....+.. +..+++|++|
T Consensus 379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~---~~~l~~L~~L 454 (606)
T 3t6q_A 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL-DISSEQL---FDGLPALQHL 454 (606)
T ss_dssp CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC-BTTCTTT---TTTCTTCCEE
T ss_pred CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc-CCcCHHH---HhCCCCCCEE
Confidence 6666666654333344555566666666665532211111 23445555555555542 2222111 3445555555
Q ss_pred EecCCCC-------------------------cccccccccccccCCCCCccccceEeccCCCCCccc-cccccCCCCcc
Q 046441 346 AISGCDD-------------------------DMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERL-SSSIVDLQNLT 399 (465)
Q Consensus 346 ~l~~~~~-------------------------~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~ 399 (465)
++++|.. .+..++. ..+..+++|++|++++ ++++.+ +..+.+++.|
T Consensus 455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L- 526 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ------HAFTSLKMMNHVDLSH-NRLTSSSIEALSHLKGI- 526 (606)
T ss_dssp ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT------TTTTTCTTCCEEECCS-SCCCGGGGGGGTTCCSC-
T ss_pred ECCCCCCCccccccchhhccCCCccEEECCCCccCccCh------hhhccccCCCEEECCC-CccCcCChhHhCccccc-
Confidence 5555410 2222211 1123445666666666 344443 2355566666
Q ss_pred eEEecCCCCCCcCCCCCC--cccccEEeecCCc
Q 046441 400 ELYLGDCPKLKYFPEKGL--PSSLLRLYIDECP 430 (465)
Q Consensus 400 ~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 430 (465)
+|++++ +.++.++...+ +++|++|++++|+
T Consensus 527 ~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 527 YLNLAS-NHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp EEECCS-SCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred EEECcC-CcccccCHhhcccCCCCCEEeCCCCC
Confidence 666666 34555444322 4677777777654
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=2.2e-28 Score=251.51 Aligned_cols=394 Identities=13% Similarity=0.174 Sum_probs=266.1
Q ss_pred cccceeecccCCCCcccccccccCCCCcEEEecCCCC-------------------------------------------
Q 046441 24 CRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSS------------------------------------------- 60 (465)
Q Consensus 24 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~------------------------------------------- 60 (465)
.+++.|+++++..-..+|..++++++|++|++++|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 5799999999988668899999999999999998731
Q ss_pred ----------------------------------CCCCC-CCcCcCcccEEEccCCccccc------------------c
Q 046441 61 ----------------------------------LVSFP-EVALPSKLKKIRISSCDALKS------------------L 87 (465)
Q Consensus 61 ----------------------------------l~~~~-~~~~l~~L~~L~l~~~~~l~~------------------~ 87 (465)
++.+| .++.+++|++|+++++. +.. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccC
Confidence 11244 35568888888888865 665 6
Q ss_pred ccccccCCCCCccEEEecCCcCcceecCc-cCCCCccEEeeccccCccc--cccccccccCCCCCCchhhhcccCCeeec
Q 046441 88 PEAWMCDTNSSLEILEIWICCSLTYIAGV-QLPRSLKRLHILLCNNIRT--LTVEEGIQCSNSSSSSRRYISSLLEHLEI 164 (465)
Q Consensus 88 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 164 (465)
|..+....+++|++|++++|.....+|.. ..+++|+.|+++++..++. + |..+.... ....+++|++|++
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~l--p~~~~~L~-----~~~~l~~L~~L~L 312 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL--KDDWQALA-----DAPVGEKIQIIYI 312 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHH--HHHHHHHH-----HSGGGGTCCEEEC
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccc--hHHHHhhh-----ccccCCCCCEEEC
Confidence 66632124588888888888555555543 5567888888888653543 4 65554310 0000377888888
Q ss_pred cCCCCccccccCCCcch--hhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCcc
Q 046441 165 GNCRSLTCIFSKNELPA--TLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQ 242 (465)
Q Consensus 165 ~~c~~l~~~~~~~~~~~--~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~ 242 (465)
++ +.++. +|. .+ +.+ ++|+.|++++|...+.+| .++.+++|++|++++|... .+|..+..+++
T Consensus 313 ~~-n~l~~------ip~~~~l-----~~l-~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 377 (636)
T 4eco_A 313 GY-NNLKT------FPVETSL-----QKM-KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTE 377 (636)
T ss_dssp CS-SCCSS------CCCHHHH-----TTC-TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECT
T ss_pred CC-CcCCc------cCchhhh-----ccC-CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcc
Confidence 88 44443 233 33 444 678888888876444777 7888888888888887544 67777888888
Q ss_pred -ccEEecccCcccccCCCCCCCC--CCCceEEEecCCCcCccccccc-------CCCcccceeeccCCCCCccCCC--CC
Q 046441 243 -LQEISIEKCGNLESFPEGGLPC--AKLSKLRIYGCERLEALPKGLH-------NLKSLQELRIGRGVELPSLEED--GL 310 (465)
Q Consensus 243 -L~~L~l~~~~~l~~l~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~--~~ 310 (465)
|++|++++| .++.+|..+... ++|+.|++++|......|..+. .+++|++|++++|. +..++.. ..
T Consensus 378 ~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~ 455 (636)
T 4eco_A 378 QVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFST 455 (636)
T ss_dssp TCCEEECCSS-CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHT
T ss_pred cCcEEEccCC-cCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHcc
Confidence 899998888 466777655443 3788888888876666666666 67788889998874 4455542 34
Q ss_pred CCccceeeecCCccccccccccccc----CCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCc
Q 046441 311 PTNLHSLEIDGNMEIWKSTIEWGRG----FHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLE 386 (465)
Q Consensus 311 ~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 386 (465)
+++|++|++++|... ......... +..+++|++|++++| .+..+|.... ...+++|++|++++ ++++
T Consensus 456 l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~lp~~~~-----~~~l~~L~~L~Ls~-N~l~ 526 (636)
T 4eco_A 456 GSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN--KLTKLSDDFR-----ATTLPYLVGIDLSY-NSFS 526 (636)
T ss_dssp TCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS--CCCBCCGGGS-----TTTCTTCCEEECCS-SCCS
T ss_pred CCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC--cCCccChhhh-----hccCCCcCEEECCC-CCCC
Confidence 678899999888733 333222100 112238899999987 6666665430 01567899999999 6888
Q ss_pred cccccccCCCCcceEEecC------CCCCCcCCCC-CCcccccEEeecCCchHHHHHhhcCCCcccccCCcceEeecCch
Q 046441 387 RLSSSIVDLQNLTELYLGD------CPKLKYFPEK-GLPSSLLRLYIDECPLIAEKCRKDGGQYWDLLTHIPSVLIDLAK 459 (465)
Q Consensus 387 ~l~~~~~~l~~L~~L~l~~------c~~l~~l~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (465)
.+|..+..+++|++|++++ +.-...+|.. .-+++|++|++++|.- +. ....+. ..+..+.+.++.
T Consensus 527 ~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~-----ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK-----VNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB-----CCSCCC--TTCCEEECCSCT
T ss_pred CcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Cc-----cCHhHh--CcCCEEECcCCC
Confidence 8888888899999999954 3223445542 2268899999998865 21 111122 456666666653
No 8
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=8.1e-27 Score=234.99 Aligned_cols=358 Identities=18% Similarity=0.158 Sum_probs=232.9
Q ss_pred ccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCC-C-CCcCcCcccEEEccCCccccccccccccCCCCCcc
Q 046441 23 SCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSF-P-EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLE 100 (465)
Q Consensus 23 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~-~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 100 (465)
+++|++|++++|......|..++.+++|++|++++| .+..+ | .++.+++|++|+++++. ++.+|.. ..++|+
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~----~l~~L~ 93 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK-LVKISCH----PTVNLK 93 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC----CCCCCS
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc-eeecCcc----ccCCcc
Confidence 478999999999873344467889999999999998 55655 3 46678999999999964 7777665 458899
Q ss_pred EEEecCCcCccee--cC-ccCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccC--CeeeccCCCCc--ccc
Q 046441 101 ILEIWICCSLTYI--AG-VQLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLL--EHLEIGNCRSL--TCI 173 (465)
Q Consensus 101 ~L~l~~~~~l~~~--~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L--~~L~l~~c~~l--~~~ 173 (465)
+|+++++ .+..+ |. ...+++|+.|+++++ .++.. .+.. +++| +.|+++++ .+ ..
T Consensus 94 ~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~----~~~~-----------l~~L~L~~L~l~~n-~l~~~~- 154 (520)
T 2z7x_B 94 HLDLSFN-AFDALPICKEFGNMSQLKFLGLSTT-HLEKS----SVLP-----------IAHLNISKVLLVLG-ETYGEK- 154 (520)
T ss_dssp EEECCSS-CCSSCCCCGGGGGCTTCCEEEEEES-SCCGG----GGGG-----------GTTSCEEEEEEEEC-TTTTSS-
T ss_pred EEeccCC-ccccccchhhhccCCcceEEEecCc-ccchh----hccc-----------cccceeeEEEeecc-cccccc-
Confidence 9999997 55543 22 256789999999885 34322 1222 4667 88998884 44 22
Q ss_pred ccCCCcchhhhhcc---------------------cCCCCCCccEEEecCCC-------ChhhhhhhhcCCC--------
Q 046441 174 FSKNELPATLESLE---------------------VGNLPPSLKVLDIYGCP-------KLESIAERLDNNT-------- 217 (465)
Q Consensus 174 ~~~~~~~~~~~~l~---------------------~~~~~~~L~~L~l~~~~-------~l~~~~~~~~~l~-------- 217 (465)
..|..+..+. +..+ ++|+.+++++|. ..+.++ .++.++
T Consensus 155 ----~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~ 228 (520)
T 2z7x_B 155 ----EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTV-ANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLN 228 (520)
T ss_dssp ----CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTC-SEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEE
T ss_pred ----cccccccccccceEEEEeccCcchhhhhhhhhhcc-cceeeccccccccccccceeecchh-hhccccchhhcccc
Confidence 1222222211 1123 556666666543 111111 233333
Q ss_pred -------------------CCcEEecccccccccccccc-----ccCccccEEecccCcccccCC---------------
Q 046441 218 -------------------SLETISILCCENLKILPSGL-----HNLRQLQEISIEKCGNLESFP--------------- 258 (465)
Q Consensus 218 -------------------~L~~L~l~~~~~~~~l~~~~-----~~~~~L~~L~l~~~~~l~~l~--------------- 258 (465)
+|++|++++|...+.+|..+ ..+++|+.++++++.. .+|
T Consensus 229 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~ 306 (520)
T 2z7x_B 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKN 306 (520)
T ss_dssp EEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSE
T ss_pred ccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeE
Confidence 56666666655444556555 5555555555555422 222
Q ss_pred ---------CC--CCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCcc---CC-CCCCCccceeeecCCc
Q 046441 259 ---------EG--GLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSL---EE-DGLPTNLHSLEIDGNM 323 (465)
Q Consensus 259 ---------~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~-~~~~~~L~~L~l~~~~ 323 (465)
.. ...+++|+.|++++|......|..++.+++|++|++++|. +..+ +. .+.+++|++|++++|.
T Consensus 307 L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred EEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc
Confidence 00 1356678888888876555566777788888888888874 3332 21 3566788888888887
Q ss_pred ccccccccccccCCCCCCccEEEecCCCCccc-ccccccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEE
Q 046441 324 EIWKSTIEWGRGFHRFSSLRCLAISGCDDDMV-SFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELY 402 (465)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~ 402 (465)
......... +..+++|++|++++| .+. .++. . .+++|++|++++ ++++.+|..+..+++|++|+
T Consensus 386 l~~~l~~~~---~~~l~~L~~L~Ls~N--~l~~~~~~-~--------l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~ 450 (520)
T 2z7x_B 386 VSYDEKKGD---CSWTKSLLSLNMSSN--ILTDTIFR-C--------LPPRIKVLDLHS-NKIKSIPKQVVKLEALQELN 450 (520)
T ss_dssp CBCCGGGCS---CCCCTTCCEEECCSS--CCCGGGGG-S--------CCTTCCEEECCS-SCCCCCCGGGGGCTTCCEEE
T ss_pred CCcccccch---hccCccCCEEECcCC--CCCcchhh-h--------hcccCCEEECCC-CcccccchhhhcCCCCCEEE
Confidence 333233222 556788888888887 442 2222 1 236999999999 58999998777999999999
Q ss_pred ecCCCCCCcCCCCCC--cccccEEeecCCc
Q 046441 403 LGDCPKLKYFPEKGL--PSSLLRLYIDECP 430 (465)
Q Consensus 403 l~~c~~l~~l~~~~~--~~~L~~L~l~~c~ 430 (465)
+++ +.++.+|...+ +++|++|++++++
T Consensus 451 L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 451 VAS-NQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC-CcCCccCHHHhccCCcccEEECcCCC
Confidence 999 57888887533 6899999999875
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=5.4e-27 Score=245.70 Aligned_cols=343 Identities=15% Similarity=0.154 Sum_probs=258.1
Q ss_pred cccccccCCCCcEEEecCCCCCCC------------------CC-CCc--CcCcccEEEccCCccccccccccccCCCCC
Q 046441 40 LPQSSLSLSSLREIEICKCSSLVS------------------FP-EVA--LPSKLKKIRISSCDALKSLPEAWMCDTNSS 98 (465)
Q Consensus 40 l~~~~~~l~~L~~L~l~~~~~l~~------------------~~-~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 98 (465)
+|..++++++|++|++++| .+.. +| .++ .+++|++|++++|.....+|..+ ..+++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l--~~L~~ 516 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL--YDLPE 516 (876)
T ss_dssp ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG--GGCSS
T ss_pred hhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH--hCCCC
Confidence 7888999999999999998 4565 77 455 79999999999987677777553 34689
Q ss_pred ccEEEecCCcCcce--ecCc--------cCCCCccEEeeccccCcccccccc--ccccCCCCCCchhhhcccCCeeeccC
Q 046441 99 LEILEIWICCSLTY--IAGV--------QLPRSLKRLHILLCNNIRTLTVEE--GIQCSNSSSSSRRYISSLLEHLEIGN 166 (465)
Q Consensus 99 L~~L~l~~~~~l~~--~~~~--------~~~~~L~~L~l~~c~~l~~~~~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~ 166 (465)
|+.|+++++..+.. +|.. ..+++|+.|+++++ .++.+ |. .+.. +++|+.|++++
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~i--p~~~~l~~-----------L~~L~~L~Ls~ 582 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEF--PASASLQK-----------MVKLGLLDCVH 582 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBC--CCHHHHTT-----------CTTCCEEECTT
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCcc--CChhhhhc-----------CCCCCEEECCC
Confidence 99999999853543 4422 33469999999985 56666 76 5655 78899999998
Q ss_pred CCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCC-CcEEeccccccccccccccccCc--cc
Q 046441 167 CRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTS-LETISILCCENLKILPSGLHNLR--QL 243 (465)
Q Consensus 167 c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~-L~~L~l~~~~~~~~l~~~~~~~~--~L 243 (465)
+.+.. ++ .+ +.+ ++|+.|++++|. +..+|..+..+++ |+.|++++|... .+|..+...+ +|
T Consensus 583 -N~l~~-lp------~~-----~~L-~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 583 -NKVRH-LE------AF-----GTN-VKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646 (876)
T ss_dssp -SCCCB-CC------CC-----CTT-SEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred -CCccc-ch------hh-----cCC-CcceEEECcCCc-cccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCC
Confidence 55654 43 12 445 789999999976 5588888999999 999999998754 6787776654 49
Q ss_pred cEEecccCcccccCCCC-----CCCCCCCceEEEecCCCcCcccccc-cCCCcccceeeccCCCCCccCCC-CC------
Q 046441 244 QEISIEKCGNLESFPEG-----GLPCAKLSKLRIYGCERLEALPKGL-HNLKSLQELRIGRGVELPSLEED-GL------ 310 (465)
Q Consensus 244 ~~L~l~~~~~l~~l~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~-~~------ 310 (465)
+.|++++|.....++.. ....++|+.|++++|. +..+|..+ ..+++|+.|++++| .+..++.. ..
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNY 724 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCC
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccc
Confidence 99999999544433321 1234589999999986 55777655 48899999999998 44566542 11
Q ss_pred --CCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccC------C
Q 046441 311 --PTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGN------F 382 (465)
Q Consensus 311 --~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------c 382 (465)
+++|++|++++|. +...+.... ...+++|+.|++++| .+..+|... ..+++|+.|++++ +
T Consensus 725 ~nl~~L~~L~Ls~N~-L~~lp~~l~--~~~l~~L~~L~Ls~N--~L~~lp~~l-------~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNK-LTSLSDDFR--ATTLPYLSNMDVSYN--CFSSFPTQP-------LNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp TTGGGCCEEECCSSC-CCCCCGGGS--TTTCTTCCEEECCSS--CCSSCCCGG-------GGCTTCCEEECCCCBCTTCC
T ss_pred cccCCccEEECCCCC-CccchHHhh--hccCCCcCEEEeCCC--CCCccchhh-------hcCCCCCEEECCCCCCcccc
Confidence 2389999999997 443333321 138899999999998 666676654 2677999999976 2
Q ss_pred CCCccccccccCCCCcceEEecCCCCCCcCCCCCCcccccEEeecCCch
Q 046441 383 PNLERLSSSIVDLQNLTELYLGDCPKLKYFPEKGLPSSLLRLYIDECPL 431 (465)
Q Consensus 383 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~ 431 (465)
.-...+|..+.++++|++|++++| .+..+|.. +.++|+.|++++|+.
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCEEECCSCTT
T ss_pred cccccChHHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCEEECCCCCC
Confidence 224467778899999999999995 66889886 458999999999964
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=3.2e-26 Score=227.20 Aligned_cols=342 Identities=20% Similarity=0.234 Sum_probs=253.8
Q ss_pred ccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEE
Q 046441 23 SCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEIL 102 (465)
Q Consensus 23 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 102 (465)
+++++.|++.++.. +.+|. +..+++|++|++++| .+..+++++.+++|++|++++|. +..++.. ..+++|++|
T Consensus 45 l~~l~~L~l~~~~i-~~l~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGI-KSIDG-VEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITPL---ANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCC-CCCTT-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGGG---TTCTTCCEE
T ss_pred hccccEEecCCCCC-ccCcc-hhhhcCCCEEECCCC-ccCCchhhhccccCCEEECCCCc-cccChhh---cCCCCCCEE
Confidence 57899999998876 67774 788999999999998 67777778889999999999975 6666652 567999999
Q ss_pred EecCCcCcceecCccCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcchh
Q 046441 103 EIWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPAT 182 (465)
Q Consensus 103 ~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 182 (465)
++++| .++.++....+++|+.|+++++ .+..+ +. +.. +++|++|++++ .+.. .+.
T Consensus 118 ~L~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~--~~-~~~-----------l~~L~~L~l~~--~~~~-~~~------ 172 (466)
T 1o6v_A 118 TLFNN-QITDIDPLKNLTNLNRLELSSN-TISDI--SA-LSG-----------LTSLQQLSFGN--QVTD-LKP------ 172 (466)
T ss_dssp ECCSS-CCCCCGGGTTCTTCSEEEEEEE-EECCC--GG-GTT-----------CTTCSEEEEEE--SCCC-CGG------
T ss_pred ECCCC-CCCCChHHcCCCCCCEEECCCC-ccCCC--hh-hcc-----------CCcccEeecCC--cccC-chh------
Confidence 99997 6777776677889999999986 35544 32 332 67899988864 3332 111
Q ss_pred hhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCC
Q 046441 183 LESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGL 262 (465)
Q Consensus 183 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 262 (465)
+ ..+ ++|+.|++++|. +..++ .+..+++|++|++++|......+ +..+++|++|++++| .++.++ ...
T Consensus 173 ~-----~~l-~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~-~l~ 240 (466)
T 1o6v_A 173 L-----ANL-TTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN-QLKDIG-TLA 240 (466)
T ss_dssp G-----TTC-TTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCCCG-GGG
T ss_pred h-----ccC-CCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCC-Ccccch-hhh
Confidence 1 444 789999999876 44443 37888999999999876554333 667889999999988 555554 344
Q ss_pred CCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCc
Q 046441 263 PCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSL 342 (465)
Q Consensus 263 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L 342 (465)
.+++|+.|++++|. +...+. +..+++|++|++++|. +..++....+++|++|++++|. +..... +..+++|
T Consensus 241 ~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~l~~L 311 (466)
T 1o6v_A 241 SLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQ-LEDISP-----ISNLKNL 311 (466)
T ss_dssp GCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSC-CSCCGG-----GGGCTTC
T ss_pred cCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCc-cCccccccCCCccCeEEcCCCc-ccCchh-----hcCCCCC
Confidence 56789999999986 444443 7888999999999884 4445446677899999999987 333322 4578899
Q ss_pred cEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCCCCCccccc
Q 046441 343 RCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPEKGLPSSLL 422 (465)
Q Consensus 343 ~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~ 422 (465)
++|++++| .+..++.. ..+++|++|+++++ +++.++ .+..+++|++|++++| .+..++....+++|+
T Consensus 312 ~~L~L~~n--~l~~~~~~--------~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~ 378 (466)
T 1o6v_A 312 TYLTLYFN--NISDISPV--------SSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRIT 378 (466)
T ss_dssp SEEECCSS--CCSCCGGG--------GGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCC
T ss_pred CEEECcCC--cCCCchhh--------ccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCC-ccCccchhhcCCCCC
Confidence 99999987 55544432 25678999999984 788775 5778899999999985 566655444568899
Q ss_pred EEeecCCc
Q 046441 423 RLYIDECP 430 (465)
Q Consensus 423 ~L~l~~c~ 430 (465)
+|++++|+
T Consensus 379 ~L~l~~n~ 386 (466)
T 1o6v_A 379 QLGLNDQA 386 (466)
T ss_dssp EEECCCEE
T ss_pred EEeccCCc
Confidence 99998874
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=2.6e-26 Score=235.77 Aligned_cols=59 Identities=20% Similarity=0.149 Sum_probs=33.1
Q ss_pred CccccceEeccCCCCCcccc-ccccCCCCcceEEecCCCCCCcC-CC-CCCcccccEEeecCCc
Q 046441 370 LPACLASLMIGNFPNLERLS-SSIVDLQNLTELYLGDCPKLKYF-PE-KGLPSSLLRLYIDECP 430 (465)
Q Consensus 370 ~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l-~~-~~~~~~L~~L~l~~c~ 430 (465)
.+++|++|+++++ +++.++ ..+..+++|++|++++| .++.+ |. ..-+++|++|++++|.
T Consensus 471 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 471 NTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc
Confidence 4556666666663 555443 35566666666666663 45444 22 1124666666666663
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=4.6e-26 Score=241.95 Aligned_cols=226 Identities=16% Similarity=0.171 Sum_probs=116.0
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccC-CCCCCCCCCCceEE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESF-PEGGLPCAKLSKLR 271 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~ 271 (465)
++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++| .++.+ +..+..+++|+.|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEE
Confidence 45666666665433333444566666666666665554444555666666666666666 33333 33455556666666
Q ss_pred EecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCccc-------------------ccccccc
Q 046441 272 IYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEI-------------------WKSTIEW 332 (465)
Q Consensus 272 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------------------~~~~~~~ 332 (465)
+++|......+..+..+++|++|++++|. +..++ .+++|++|++++|... .......
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~---~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~ 420 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIH---FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCS---SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHH
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCC-CCccc---CCCCcchhccCCCCcccccccccccceeecccCccccCchhh
Confidence 66664322223345556666666666652 22221 1233333333333211 0000000
Q ss_pred cccCCCCCCccEEEecCCCCcccccccc---------------ccc---------ccCCCCCccccceEeccCCCCCccc
Q 046441 333 GRGFHRFSSLRCLAISGCDDDMVSFPLE---------------DKR---------LGTALPLPACLASLMIGNFPNLERL 388 (465)
Q Consensus 333 ~~~~~~~~~L~~L~l~~~~~~l~~~~~~---------------~~~---------~~~~~~~~~~L~~L~l~~c~~l~~l 388 (465)
. +..+++|++|++++| .+..++.. .+. ....+..+++|++|++++ ++++.+
T Consensus 421 ~--~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~ 495 (844)
T 3j0a_A 421 F--LLRVPHLQILILNQN--RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSL 495 (844)
T ss_dssp H--HTTCTTCCEEEEESC--CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH-HHHTTC
T ss_pred h--hhcCCccceeeCCCC--cccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC-Cccccc
Confidence 0 224555666666654 22211110 000 001233456777777777 466666
Q ss_pred cc-cccCCCCcceEEecCCCCCCcCCCCCCcccccEEeecCC
Q 046441 389 SS-SIVDLQNLTELYLGDCPKLKYFPEKGLPSSLLRLYIDEC 429 (465)
Q Consensus 389 ~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c 429 (465)
+. .+..+++|++|++++ +.++.++...+.++|+.|+++++
T Consensus 496 ~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~~L~~L~Ls~N 536 (844)
T 3j0a_A 496 PPGVFSHLTALRGLSLNS-NRLTVLSHNDLPANLEILDISRN 536 (844)
T ss_dssp CTTSSSSCCSCSEEEEES-CCCSSCCCCCCCSCCCEEEEEEE
T ss_pred ChhHccchhhhheeECCC-CCCCccChhhhhccccEEECCCC
Confidence 55 466778888888887 46777766555566666666654
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=6.2e-26 Score=231.21 Aligned_cols=150 Identities=21% Similarity=0.213 Sum_probs=79.4
Q ss_pred CCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccC--CCCCCCccceeeecCCcccccccccccccCCCCCCc
Q 046441 265 AKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLE--EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSL 342 (465)
Q Consensus 265 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L 342 (465)
++|+.|++++|. +..++..+..+++|++|++++|......+ ....+++|++|++++|.... ..+.. +.++++|
T Consensus 373 ~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~---~~~l~~L 447 (570)
T 2z63_A 373 TSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGI---FNGLSSL 447 (570)
T ss_dssp SCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE-CCTTT---TTTCTTC
T ss_pred CccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc-cchhh---hhcCCcC
Confidence 344444444432 22222234445555555555543211111 12344566666666665222 22221 4556666
Q ss_pred cEEEecCCCCccc--ccccccccccCCCCCccccceEeccCCCCCccc-cccccCCCCcceEEecCCCCCCcCCCCCC--
Q 046441 343 RCLAISGCDDDMV--SFPLEDKRLGTALPLPACLASLMIGNFPNLERL-SSSIVDLQNLTELYLGDCPKLKYFPEKGL-- 417 (465)
Q Consensus 343 ~~L~l~~~~~~l~--~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-- 417 (465)
++|++++| .+. .+|. .+..+++|++|++++| +++.+ |..+..+++|++|++++| .++.++...+
T Consensus 448 ~~L~l~~n--~l~~~~~p~-------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~ 516 (570)
T 2z63_A 448 EVLKMAGN--SFQENFLPD-------IFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDR 516 (570)
T ss_dssp CEEECTTC--EEGGGEECS-------CCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTT
T ss_pred cEEECcCC--cCccccchh-------hhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhc
Confidence 66666665 222 2332 2235667788888774 66665 446677778888888774 5666655332
Q ss_pred cccccEEeecCCc
Q 046441 418 PSSLLRLYIDECP 430 (465)
Q Consensus 418 ~~~L~~L~l~~c~ 430 (465)
+++|++|++++|+
T Consensus 517 l~~L~~L~l~~N~ 529 (570)
T 2z63_A 517 LTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCcEEEecCCc
Confidence 5777888877753
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=5.1e-26 Score=230.76 Aligned_cols=376 Identities=17% Similarity=0.170 Sum_probs=199.6
Q ss_pred ccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCC--CCcCcCcccEEEccCCccccccccccccCCCCCcc
Q 046441 23 SCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLE 100 (465)
Q Consensus 23 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 100 (465)
+++|++|++++|......|..++.+++|++|++++| .+..++ .++.+++|++|+++++. +..++.... ..+++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~ 101 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWF-GPLSSLK 101 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHH-TTCTTCC
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHh-ccCCCCc
Confidence 468899999988863344567888899999999887 555555 36668889999998865 666655422 4568889
Q ss_pred EEEecCCcCcceec---CccCCCCccEEeeccccCcccccccc-ccccCCCCCCchhhhcccCCeeeccCCCCccccccC
Q 046441 101 ILEIWICCSLTYIA---GVQLPRSLKRLHILLCNNIRTLTVEE-GIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSK 176 (465)
Q Consensus 101 ~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 176 (465)
+|+++++ .++.++ ....+++|+.|+++++..++.+ |. .+.. +++|++|++++ +.++. ...
T Consensus 102 ~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~-----------l~~L~~L~L~~-n~l~~-~~~ 165 (549)
T 2z81_A 102 YLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEI--RRIDFAG-----------LTSLNELEIKA-LSLRN-YQS 165 (549)
T ss_dssp EEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEE--CTTTTTT-----------CCEEEEEEEEE-TTCCE-ECT
T ss_pred EEECCCC-cccccchhhhhhccCCccEEECCCCcccccc--CHhhhhc-----------ccccCeeeccC-Ccccc-cCh
Confidence 9999887 455332 2255678888888887555555 43 2333 57788888877 44443 111
Q ss_pred CCcch--hhhhcc-------------cCCCCCCccEEEecCCCChhh-------------------------------hh
Q 046441 177 NELPA--TLESLE-------------VGNLPPSLKVLDIYGCPKLES-------------------------------IA 210 (465)
Q Consensus 177 ~~~~~--~~~~l~-------------~~~~~~~L~~L~l~~~~~l~~-------------------------------~~ 210 (465)
..+.. .+..+. ...+ ++|++|++++|...+. ++
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESAFLLEIFADIL-SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp TTTTTCSEEEEEEEECSBSTTHHHHHHHST-TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred hhhhccccCceEecccCcccccchhhHhhc-ccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence 11100 000000 0112 5566666666432110 01
Q ss_pred hhhcCCCCCcEEeccccccccc--cc----cccc-----------------------------cCccccEEecccCcccc
Q 046441 211 ERLDNNTSLETISILCCENLKI--LP----SGLH-----------------------------NLRQLQEISIEKCGNLE 255 (465)
Q Consensus 211 ~~~~~l~~L~~L~l~~~~~~~~--l~----~~~~-----------------------------~~~~L~~L~l~~~~~l~ 255 (465)
..+..+++|+.+++++|...+. ++ ..+. ..++|++|++++| .++
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~ 323 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVF 323 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCC
T ss_pred HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-ccc
Confidence 1112223333333333221110 00 0000 0123333444333 233
Q ss_pred cCCCCC-CCCCCCceEEEecCCCcCccc---ccccCCCcccceeeccCCCCCccCC----CCCCCccceeeecCCccccc
Q 046441 256 SFPEGG-LPCAKLSKLRIYGCERLEALP---KGLHNLKSLQELRIGRGVELPSLEE----DGLPTNLHSLEIDGNMEIWK 327 (465)
Q Consensus 256 ~l~~~~-~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~ 327 (465)
.+|... ..+++|+.|++++|.....+| ..++.+++|++|++++|. +..++. .+.+++|++|++++|. +..
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 401 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNT-FHP 401 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCC-CCC
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCC-Ccc
Confidence 333322 134566666666655333332 124455666666666652 322221 2344556666666654 222
Q ss_pred ccccccccCCCCCCccEEEecCCCCcccccccc-----------cccccCCCCCccccceEeccCCCCCccccccccCCC
Q 046441 328 STIEWGRGFHRFSSLRCLAISGCDDDMVSFPLE-----------DKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQ 396 (465)
Q Consensus 328 ~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~-----------~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~ 396 (465)
.+.. +..+++|++|++++| .+..++.. .+.+......+++|++|++++ ++++.+|. ...++
T Consensus 402 lp~~----~~~~~~L~~L~Ls~N--~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~-N~l~~ip~-~~~l~ 473 (549)
T 2z81_A 402 MPDS----CQWPEKMRFLNLSST--GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR-NKLKTLPD-ASLFP 473 (549)
T ss_dssp CCSC----CCCCTTCCEEECTTS--CCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCS-SCCSSCCC-GGGCT
T ss_pred CChh----hcccccccEEECCCC--CcccccchhcCCceEEECCCCChhhhcccCChhcEEECCC-CccCcCCC-cccCc
Confidence 2111 344555555555554 33322221 111111122456888888888 57888875 45678
Q ss_pred CcceEEecCCCCCCcCCCCC--CcccccEEeecCCc
Q 046441 397 NLTELYLGDCPKLKYFPEKG--LPSSLLRLYIDECP 430 (465)
Q Consensus 397 ~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c~ 430 (465)
+|++|++++ +.++.++... .+++|++|++++|+
T Consensus 474 ~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 474 VLLVMKISR-NQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp TCCEEECCS-SCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cCCEEecCC-CccCCcCHHHHhcCcccCEEEecCCC
Confidence 888888888 4677766542 26788888887764
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.1e-26 Score=241.31 Aligned_cols=374 Identities=12% Similarity=0.144 Sum_probs=211.1
Q ss_pred cccceeecccCCCCcccccccccCCCCcEEEe-cCCCC------------------------------------------
Q 046441 24 CRLEYLRLRYCEGLVKLPQSSLSLSSLREIEI-CKCSS------------------------------------------ 60 (465)
Q Consensus 24 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l-~~~~~------------------------------------------ 60 (465)
.++..|+|+++.....+|..++++++|++|++ +++..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 67999999999886688999999999999999 55410
Q ss_pred ----------------------------------CCCCC-CCcCcCcccEEEccCCccccc------------------c
Q 046441 61 ----------------------------------LVSFP-EVALPSKLKKIRISSCDALKS------------------L 87 (465)
Q Consensus 61 ----------------------------------l~~~~-~~~~l~~L~~L~l~~~~~l~~------------------~ 87 (465)
+..+| .++.+++|++|+++++. +.. +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccC
Confidence 00133 24456667777776654 444 5
Q ss_pred ccccccCCCCCccEEEecCCcCcceecCc-cCCCCccEEeeccccCccc--cccccccccCCCCCCchhhhcccCCeeec
Q 046441 88 PEAWMCDTNSSLEILEIWICCSLTYIAGV-QLPRSLKRLHILLCNNIRT--LTVEEGIQCSNSSSSSRRYISSLLEHLEI 164 (465)
Q Consensus 88 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 164 (465)
|..+.+..+++|+.|++++|.....+|.. ..+++|+.|+++++..++. + |..+..... ....+++|+.|++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~i--P~~i~~L~~----~~~~l~~L~~L~L 555 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL--KADWTRLAD----DEDTGPKIQIFYM 555 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHH--HHHHHHHHH----CTTTTTTCCEEEC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccc--hHHHHhhhh----cccccCCccEEEe
Confidence 55432123566777777666444444432 4456666776666532432 3 443332100 0000346667776
Q ss_pred cCCCCccccccCCCcch--hhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCcc
Q 046441 165 GNCRSLTCIFSKNELPA--TLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQ 242 (465)
Q Consensus 165 ~~c~~l~~~~~~~~~~~--~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~ 242 (465)
++ +.+.. + |. .+ ..+ ++|+.|++++|. +..+| .++.+++|+.|++++|... .+|..+..+++
T Consensus 556 s~-N~L~~-i-----p~~~~l-----~~L-~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~ 619 (876)
T 4ecn_A 556 GY-NNLEE-F-----PASASL-----QKM-VKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTD 619 (876)
T ss_dssp CS-SCCCB-C-----CCHHHH-----TTC-TTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECT
T ss_pred eC-CcCCc-c-----CChhhh-----hcC-CCCCEEECCCCC-cccch-hhcCCCcceEEECcCCccc-cchHHHhhccc
Confidence 66 34433 2 22 22 333 567777776654 33555 5666677777777765544 56666666666
Q ss_pred -ccEEecccCcccccCCCCCCCCC--CCceEEEecCCCcCcccc---ccc--CCCcccceeeccCCCCCccCCC--CCCC
Q 046441 243 -LQEISIEKCGNLESFPEGGLPCA--KLSKLRIYGCERLEALPK---GLH--NLKSLQELRIGRGVELPSLEED--GLPT 312 (465)
Q Consensus 243 -L~~L~l~~~~~l~~l~~~~~~~~--~L~~L~l~~~~~~~~~~~---~~~--~l~~L~~L~l~~~~~~~~~~~~--~~~~ 312 (465)
|++|++++| .+..+|..+...+ +|+.|++++|.....+|. .+. .+++|+.|++++|. +..++.. ..++
T Consensus 620 ~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~ 697 (876)
T 4ecn_A 620 QVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGS 697 (876)
T ss_dssp TCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTC
T ss_pred cCCEEECcCC-CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCC
Confidence 777777766 3555655443332 367777776654333221 122 23467777777663 3344432 2456
Q ss_pred ccceeeecCCccccccccccccc----CCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccc
Q 046441 313 NLHSLEIDGNMEIWKSTIEWGRG----FHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERL 388 (465)
Q Consensus 313 ~L~~L~l~~~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 388 (465)
+|+.|++++|. +.......... +.++++|++|++++| .+..+|.... ...+++|+.|++++ ++++.+
T Consensus 698 ~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N--~L~~lp~~l~-----~~~l~~L~~L~Ls~-N~L~~l 768 (876)
T 4ecn_A 698 PISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN--KLTSLSDDFR-----ATTLPYLSNMDVSY-NCFSSF 768 (876)
T ss_dssp CCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS--CCCCCCGGGS-----TTTCTTCCEEECCS-SCCSSC
T ss_pred CCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCC--CCccchHHhh-----hccCCCcCEEEeCC-CCCCcc
Confidence 77777777765 33222221000 112236777777776 5555554320 01456777777777 577777
Q ss_pred cccccCCCCcceEEecC------CCCCCcCCCC-CCcccccEEeecCCch
Q 046441 389 SSSIVDLQNLTELYLGD------CPKLKYFPEK-GLPSSLLRLYIDECPL 431 (465)
Q Consensus 389 ~~~~~~l~~L~~L~l~~------c~~l~~l~~~-~~~~~L~~L~l~~c~~ 431 (465)
|..+..+++|+.|++++ |.-...+|.. .-+++|++|++++|..
T Consensus 769 p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 77777777777777765 2223334432 1257777888877754
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=4.2e-25 Score=229.80 Aligned_cols=103 Identities=17% Similarity=0.087 Sum_probs=65.9
Q ss_pred ccccceeecccCCCCccccc-ccccCCCCcEEEecCCCCCCCCC--CCcCcCcccEEEccCCccccccccccccCCCCCc
Q 046441 23 SCRLEYLRLRYCEGLVKLPQ-SSLSLSSLREIEICKCSSLVSFP--EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSL 99 (465)
Q Consensus 23 ~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 99 (465)
+++|++|++++|.. +.+|. .++++++|++|++++| .+..++ .++.+++|++|++++|. +...+.... ..+++|
T Consensus 72 l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L 147 (680)
T 1ziw_A 72 LPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQ-VQLENL 147 (680)
T ss_dssp CTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSS-SCCTTC
T ss_pred ccCcCEEECCCCcc-CccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCc-ccccCchhh-cccccC
Confidence 37888888888876 55654 5788888888888887 455665 35668888888888864 444333211 245677
Q ss_pred cEEEecCCcCcceecCc----cCCCCccEEeeccc
Q 046441 100 EILEIWICCSLTYIAGV----QLPRSLKRLHILLC 130 (465)
Q Consensus 100 ~~L~l~~~~~l~~~~~~----~~~~~L~~L~l~~c 130 (465)
++|+++++ .++.++.. ...++|+.|+++++
T Consensus 148 ~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 148 QELLLSNN-KIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CEEEccCC-cccccCHHHhhccccccccEEECCCC
Confidence 77777776 34443322 12256666666654
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=4.4e-26 Score=232.30 Aligned_cols=399 Identities=17% Similarity=0.142 Sum_probs=258.5
Q ss_pred ccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCC--CCcCcCcccEEEccCCccccccccccccCCCCCcc
Q 046441 23 SCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLE 100 (465)
Q Consensus 23 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 100 (465)
+++|++|++++|......+..++++++|++|++++| .+..++ .++.+++|++|+++++. +..++... ...+++|+
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~-~~~l~~L~ 127 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN-LASLENFP-IGHLKTLK 127 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCS-CTTCTTCC
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccccc-cccCCCcc-cccccccc
Confidence 588899999888763333456788888999999887 455554 35668888888888864 66665432 14557888
Q ss_pred EEEecCCcCcce--ecCc-cCCCCccEEeeccccCcccccccc-cccc---C-----------CCCCCc--hhhhcccCC
Q 046441 101 ILEIWICCSLTY--IAGV-QLPRSLKRLHILLCNNIRTLTVEE-GIQC---S-----------NSSSSS--RRYISSLLE 160 (465)
Q Consensus 101 ~L~l~~~~~l~~--~~~~-~~~~~L~~L~l~~c~~l~~~~~~~-~~~~---~-----------~~~~~~--~~~~~~~L~ 160 (465)
+|+++++ .+.. ++.. ..+++|+.|+++++ .++.+ +. .+.. . ...... ..+...+|+
T Consensus 128 ~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~--~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~ 203 (570)
T 2z63_A 128 ELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSI--YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203 (570)
T ss_dssp EEECCSS-CCCCCCCCGGGGGCTTCCEEECTTS-CCCEE--CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred EEecCCC-ccceecChhhhcccCCCCEEeCcCC-cccee--cHHHccchhccchhhhhcccCCCCceecCHHHhccCcce
Confidence 8888887 4544 2322 44678888888775 23332 11 1110 0 000000 000011344
Q ss_pred eeeccCCC------------------------------CccccccC-----------------------CCcchhhhhcc
Q 046441 161 HLEIGNCR------------------------------SLTCIFSK-----------------------NELPATLESLE 187 (465)
Q Consensus 161 ~L~l~~c~------------------------------~l~~~~~~-----------------------~~~~~~~~~l~ 187 (465)
.|+++++. .+.. ++. ...+..+
T Consensus 204 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~-~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~---- 278 (570)
T 2z63_A 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK-FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF---- 278 (570)
T ss_dssp EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE-CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT----
T ss_pred eEecccccccccchhhhhcCccccceeeeccccccCchhhhh-cchhhhccccccchhhhhhhcchhhhhhchhhh----
Confidence 44444310 0000 000 1111222
Q ss_pred cCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCC
Q 046441 188 VGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKL 267 (465)
Q Consensus 188 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L 267 (465)
..+ ++|+.|++.+|. +..+|..+..+ +|++|++++|... .+|. ..+++|++|++++|......+. ..+++|
T Consensus 279 -~~l-~~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L 349 (570)
T 2z63_A 279 -NCL-TNVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSL 349 (570)
T ss_dssp -GGG-TTCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTC
T ss_pred -cCc-CcccEEEecCcc-chhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCC
Confidence 233 789999999975 66788888888 9999999997655 5554 4689999999999854444433 567799
Q ss_pred ceEEEecCCCcCcc--cccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEE
Q 046441 268 SKLRIYGCERLEAL--PKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCL 345 (465)
Q Consensus 268 ~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L 345 (465)
+.|++++|...... +..+..+++|++|++++|......+....+++|++|++++|.......... +..+++|++|
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L 426 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYL 426 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCT---TTTCTTCCEE
T ss_pred CEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhh---hhcCCCCCEE
Confidence 99999998643222 567788999999999998533222224567899999999998433222222 6789999999
Q ss_pred EecCCCCcccccccccccccCCCCCccccceEeccCCCCCc--cccccccCCCCcceEEecCCCCCCcCCCCC--Ccccc
Q 046441 346 AISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLE--RLSSSIVDLQNLTELYLGDCPKLKYFPEKG--LPSSL 421 (465)
Q Consensus 346 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L 421 (465)
++++| .+...... .+..+++|++|++.++ .++ .+|..+..+++|++|++++| .++.++... .+++|
T Consensus 427 ~l~~n--~l~~~~~~------~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 427 DISHT--HTRVAFNG------IFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSL 496 (570)
T ss_dssp ECTTS--CCEECCTT------TTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred eCcCC--cccccchh------hhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCC
Confidence 99997 44433221 1235779999999995 665 57778889999999999995 677764322 36899
Q ss_pred cEEeecCCchHHHHHhhcCCCcccccCCcceEeecCchh
Q 046441 422 LRLYIDECPLIAEKCRKDGGQYWDLLTHIPSVLIDLAKE 460 (465)
Q Consensus 422 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (465)
++|++++|.- +. .....+..+.++..+.+.++..
T Consensus 497 ~~L~l~~n~l-~~----~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 497 QVLNMASNQL-KS----VPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CEEECCSSCC-SC----CCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEeCCCCcC-CC----CCHHHhhcccCCcEEEecCCcc
Confidence 9999999842 21 1222355667777777777654
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.6e-25 Score=227.44 Aligned_cols=152 Identities=20% Similarity=0.187 Sum_probs=115.1
Q ss_pred CCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccC----CCCCCCccceeeecCCcccccccccccccCC
Q 046441 262 LPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLE----EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFH 337 (465)
Q Consensus 262 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 337 (465)
..+++|+.|++++|......|..++.+++|++|++++|. +..++ ..+.+++|++|++++|.......... +.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~ 425 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT---CA 425 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC---CC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhh---hc
Confidence 456789999999887665577778888999999999874 44432 24667889999999988433233322 56
Q ss_pred CCCCccEEEecCCCCcccc-cccccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCCC-
Q 046441 338 RFSSLRCLAISGCDDDMVS-FPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPEK- 415 (465)
Q Consensus 338 ~~~~L~~L~l~~~~~~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~- 415 (465)
.+++|++|++++| .+.. ++. . .+++|++|++++ ++++.+|..+..+++|++|++++ +.++.+|..
T Consensus 426 ~l~~L~~L~l~~n--~l~~~~~~-~--------l~~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~ 492 (562)
T 3a79_B 426 WAESILVLNLSSN--MLTGSVFR-C--------LPPKVKVLDLHN-NRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGV 492 (562)
T ss_dssp CCTTCCEEECCSS--CCCGGGGS-S--------CCTTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTS
T ss_pred CcccCCEEECCCC--CCCcchhh-h--------hcCcCCEEECCC-CcCcccChhhcCCCCCCEEECCC-CCCCCCCHHH
Confidence 7889999999987 4432 222 1 236999999999 59999998777999999999999 678899885
Q ss_pred -CCcccccEEeecCCc
Q 046441 416 -GLPSSLLRLYIDECP 430 (465)
Q Consensus 416 -~~~~~L~~L~l~~c~ 430 (465)
..+++|++|++++++
T Consensus 493 ~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 493 FDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTTCTTCCCEECCSCC
T ss_pred HhcCCCCCEEEecCCC
Confidence 236899999999874
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.9e-25 Score=213.09 Aligned_cols=301 Identities=15% Similarity=0.188 Sum_probs=163.8
Q ss_pred ccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEE
Q 046441 23 SCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEIL 102 (465)
Q Consensus 23 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 102 (465)
+++|++|+++++.. ..++. +..+++|++|++++| .+..+++++.+++|++|++++|. +..++.. ..+++|++|
T Consensus 43 l~~L~~L~l~~~~i-~~~~~-~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~~~---~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKV-ASIQG-IEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDISAL---QNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCC-CCCTT-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGGG---TTCTTCSEE
T ss_pred cccccEEEEeCCcc-ccchh-hhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCchHH---cCCCcCCEE
Confidence 35666666666554 44443 555666666666665 44555555556666666666643 4444322 344556666
Q ss_pred EecCCcCcceecCccCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcchh
Q 046441 103 EIWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPAT 182 (465)
Q Consensus 103 ~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 182 (465)
+++++ .+..++....+++|+.|++++|..+..+ +. +
T Consensus 116 ~l~~n-~i~~~~~~~~l~~L~~L~l~~n~~~~~~--~~-~---------------------------------------- 151 (347)
T 4fmz_A 116 YLNED-NISDISPLANLTKMYSLNLGANHNLSDL--SP-L---------------------------------------- 151 (347)
T ss_dssp ECTTS-CCCCCGGGTTCTTCCEEECTTCTTCCCC--GG-G----------------------------------------
T ss_pred ECcCC-cccCchhhccCCceeEEECCCCCCcccc--cc-h----------------------------------------
Confidence 66554 3443333333344444444444333222 11 1
Q ss_pred hhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCC
Q 046441 183 LESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGL 262 (465)
Q Consensus 183 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 262 (465)
..+ ++|++|++.+|. +..++. +..+++|++|++++|.... ++. +..+++|+.|++++| .+..++. ..
T Consensus 152 ------~~l-~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~ 218 (347)
T 4fmz_A 152 ------SNM-TGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVN-QITDITP-VA 218 (347)
T ss_dssp ------TTC-TTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSS-CCCCCGG-GG
T ss_pred ------hhC-CCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccC-CCCCCch-hh
Confidence 222 455555555543 222222 4555666666666543322 222 455566666666665 3333332 33
Q ss_pred CCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCc
Q 046441 263 PCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSL 342 (465)
Q Consensus 263 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L 342 (465)
.+++|++|++++|. +..++. +..+++|++|++++| .+..++....+++|++|++++|. +.... . +..+++|
T Consensus 219 ~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-~----~~~l~~L 289 (347)
T 4fmz_A 219 NMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDIS-V----LNNLSQL 289 (347)
T ss_dssp GCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-G----GGGCTTC
T ss_pred cCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCCh-h----hcCCCCC
Confidence 44566666666654 334433 666667777777666 34444444556677777777775 33221 1 4567788
Q ss_pred cEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCC
Q 046441 343 RCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDC 406 (465)
Q Consensus 343 ~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 406 (465)
++|++++| .+....... +..+++|++|+++++ .++.++. +..+++|++|++++|
T Consensus 290 ~~L~L~~n--~l~~~~~~~------l~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 290 NSLFLNNN--QLGNEDMEV------IGGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp SEEECCSS--CCCGGGHHH------HHTCTTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSCC
T ss_pred CEEECcCC--cCCCcChhH------hhccccCCEEEccCC-ccccccC-hhhhhccceeehhhh
Confidence 88888886 444333211 124568888888884 6777765 777888888888885
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.8e-25 Score=220.41 Aligned_cols=327 Identities=17% Similarity=0.199 Sum_probs=252.6
Q ss_pred cccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccE
Q 046441 22 LSCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEI 101 (465)
Q Consensus 22 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 101 (465)
.+++|++|++++|.. +.++. ++.+++|++|++++| .+..+++++.+++|++|++++|. +..++.. ..+++|++
T Consensus 66 ~l~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~l~~L~~ 138 (466)
T 1o6v_A 66 YLNNLTQINFSNNQL-TDITP-LKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNNQ-ITDIDPL---KNLTNLNR 138 (466)
T ss_dssp GCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGGG---TTCTTCSE
T ss_pred hhcCCCEEECCCCcc-CCchh-hhccccCCEEECCCC-ccccChhhcCCCCCCEEECCCCC-CCCChHH---cCCCCCCE
Confidence 468999999999986 66665 889999999999998 66777778889999999999975 7777653 56799999
Q ss_pred EEecCCcCcceecCccCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcch
Q 046441 102 LEIWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPA 181 (465)
Q Consensus 102 L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 181 (465)
|++++| .+..++....+++|+.|.+.+ .+..+ +. +.. +++|++|++++ +.+.. ++.
T Consensus 139 L~l~~n-~l~~~~~~~~l~~L~~L~l~~--~~~~~--~~-~~~-----------l~~L~~L~l~~-n~l~~-~~~----- 194 (466)
T 1o6v_A 139 LELSSN-TISDISALSGLTSLQQLSFGN--QVTDL--KP-LAN-----------LTTLERLDISS-NKVSD-ISV----- 194 (466)
T ss_dssp EEEEEE-EECCCGGGTTCTTCSEEEEEE--SCCCC--GG-GTT-----------CTTCCEEECCS-SCCCC-CGG-----
T ss_pred EECCCC-ccCCChhhccCCcccEeecCC--cccCc--hh-hcc-----------CCCCCEEECcC-CcCCC-Chh-----
Confidence 999998 576766667788999999864 33333 22 332 68899999998 45554 221
Q ss_pred hhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCC
Q 046441 182 TLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGG 261 (465)
Q Consensus 182 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 261 (465)
+ ..+ ++|++|++++|. +..++. ++.+++|+.|++++|.... + ..+..+++|++|++++| .+..++. .
T Consensus 195 -l-----~~l-~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n-~l~~~~~-~ 261 (466)
T 1o6v_A 195 -L-----AKL-TNLESLIATNNQ-ISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANN-QISNLAP-L 261 (466)
T ss_dssp -G-----GGC-TTCSEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSS-CCCCCGG-G
T ss_pred -h-----ccC-CCCCEEEecCCc-cccccc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCC-ccccchh-h
Confidence 2 334 789999999976 444433 7789999999999976443 3 35778999999999998 5555554 5
Q ss_pred CCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCC
Q 046441 262 LPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSS 341 (465)
Q Consensus 262 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 341 (465)
..+++|+.|++++|. +..++. +..+++|++|++++|. +..++..+.+++|++|++++|. +....+ +..+++
T Consensus 262 ~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~l~~ 332 (466)
T 1o6v_A 262 SGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNN-ISDISP-----VSSLTK 332 (466)
T ss_dssp TTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSC-CSCCGG-----GGGCTT
T ss_pred hcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCCc-CCCchh-----hccCcc
Confidence 567899999999986 555554 8889999999999984 5555556778999999999997 333332 457899
Q ss_pred ccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCC
Q 046441 342 LRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPE 414 (465)
Q Consensus 342 L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 414 (465)
|++|++++| .+..++.- ..+++|++|+++++ +++.++. +..+++|++|++++| .++.+|.
T Consensus 333 L~~L~l~~n--~l~~~~~l--------~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~~~~~p~ 392 (466)
T 1o6v_A 333 LQRLFFYNN--KVSDVSSL--------ANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQ-AWTNAPV 392 (466)
T ss_dssp CCEEECCSS--CCCCCGGG--------TTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCE-EEECCCB
T ss_pred CCEeECCCC--ccCCchhh--------ccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCC-cccCCch
Confidence 999999998 56655432 36789999999994 7777765 889999999999995 5666554
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.3e-24 Score=226.18 Aligned_cols=233 Identities=18% Similarity=0.188 Sum_probs=118.0
Q ss_pred CCCcEEeccccccccccccccccCcc--ccEEecccCcccccC-CCCCCCCCCCceEEEecCCCcCcccccccCCCcccc
Q 046441 217 TSLETISILCCENLKILPSGLHNLRQ--LQEISIEKCGNLESF-PEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQE 293 (465)
Q Consensus 217 ~~L~~L~l~~~~~~~~l~~~~~~~~~--L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 293 (465)
++|+.|++++|...+..+..+..++. |++|++++| .+..+ +..+..+++|+.|++++|......|..+..+++|++
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccE
Confidence 45556666655444444445554433 666666666 33333 234445566666666666544444455666666666
Q ss_pred eeeccCCCCC-----ccC-----CCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCccccccccc--
Q 046441 294 LRIGRGVELP-----SLE-----EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLED-- 361 (465)
Q Consensus 294 L~l~~~~~~~-----~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~-- 361 (465)
|+++++.... .++ ....+++|++|++++|. +....... +..+++|++|++++|...+..++...
T Consensus 301 L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n~~~~~~l~~~~f~ 376 (680)
T 1ziw_A 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNM---FTGLINLKYLSLSNSFTSLRTLTNETFV 376 (680)
T ss_dssp EECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTT---TTTCTTCCEEECTTCBSCCCEECTTTTG
T ss_pred EeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCChhH---hccccCCcEEECCCCchhhhhcchhhhc
Confidence 6666543111 111 12345566666666665 22222222 45566666666665421122221100
Q ss_pred --------------ccc----cCCCCCccccceEeccCCCCCc-ccc-ccccCCCCcceEEecCCCCCCcCCCCCC--cc
Q 046441 362 --------------KRL----GTALPLPACLASLMIGNFPNLE-RLS-SSIVDLQNLTELYLGDCPKLKYFPEKGL--PS 419 (465)
Q Consensus 362 --------------~~~----~~~~~~~~~L~~L~l~~c~~l~-~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~ 419 (465)
..+ ...+..+++|++|++++ +.+. .++ ..+..+++|++|++++| .+..++...+ ++
T Consensus 377 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~ 454 (680)
T 1ziw_A 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL-NEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVP 454 (680)
T ss_dssp GGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCEEECCSGGGTTCTTCCEEECCSC-SEEECCTTTTTTCT
T ss_pred ccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC-CcCccccCcccccCcccccEEecCCC-CcceeChhhhhcCc
Confidence 000 01223456777777777 3554 344 35666777777777774 3555444222 57
Q ss_pred cccEEeecCCchHHHHHhhcCCCcccccCCcceEeecCch
Q 046441 420 SLLRLYIDECPLIAEKCRKDGGQYWDLLTHIPSVLIDLAK 459 (465)
Q Consensus 420 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (465)
+|++|++.+|..-. .......+..+.++..+.+.++.
T Consensus 455 ~L~~L~l~~n~l~~---~~~~p~~~~~l~~L~~L~Ls~N~ 491 (680)
T 1ziw_A 455 SLQRLMLRRVALKN---VDSSPSPFQPLRNLTILDLSNNN 491 (680)
T ss_dssp TCCEEECTTSCCBC---TTCSSCTTTTCTTCCEEECCSSC
T ss_pred ccccchhccccccc---cccCCcccccCCCCCEEECCCCC
Confidence 77777777653200 01122345556677777776654
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=2.3e-25 Score=225.91 Aligned_cols=356 Identities=18% Similarity=0.185 Sum_probs=239.5
Q ss_pred cccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCC--CcCcCcccEEEccCCccccccccccccCCCCCc
Q 046441 22 LSCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE--VALPSKLKKIRISSCDALKSLPEAWMCDTNSSL 99 (465)
Q Consensus 22 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 99 (465)
.+++|++|++++|......|..++.+++|++|++++| .+..+++ ++.+++|++|+++++. +..++.......+++|
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNL 125 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTC
T ss_pred cCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCc
Confidence 3488999999999874444567889999999999988 5666663 6778999999999875 5543322122456889
Q ss_pred cEEEecCCcCcceecCc--cCCCCccEEeeccccCccccccccccccCC-----------CC--CCchhhhcccCCeeec
Q 046441 100 EILEIWICCSLTYIAGV--QLPRSLKRLHILLCNNIRTLTVEEGIQCSN-----------SS--SSSRRYISSLLEHLEI 164 (465)
Q Consensus 100 ~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-----------~~--~~~~~~~~~~L~~L~l 164 (465)
++|+++++..+..++.. ..+++|+.|+++++. ++.. .|..+.... .. .......+++|++|++
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNY-QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEE-CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCc-cccc-ChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence 99999988657777643 556788888888753 3321 032222100 00 0000112678999999
Q ss_pred cCCCCcccccc--CCCc---chhhhhcc-----------------------------------------------cC---
Q 046441 165 GNCRSLTCIFS--KNEL---PATLESLE-----------------------------------------------VG--- 189 (465)
Q Consensus 165 ~~c~~l~~~~~--~~~~---~~~~~~l~-----------------------------------------------~~--- 189 (465)
++ +.+.. ++ ...+ ...+..+. +.
T Consensus 204 ~~-n~l~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 281 (549)
T 2z81_A 204 RD-TNLAR-FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG 281 (549)
T ss_dssp ES-CBCTT-CCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCT
T ss_pred cC-Ccccc-ccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhc
Confidence 88 45443 11 0000 00000000 00
Q ss_pred -------------------------CCCCCccEEEecCCCChhhhhhhh-cCCCCCcEEeccccccccccc---cccccC
Q 046441 190 -------------------------NLPPSLKVLDIYGCPKLESIAERL-DNNTSLETISILCCENLKILP---SGLHNL 240 (465)
Q Consensus 190 -------------------------~~~~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~~~~~~~l~---~~~~~~ 240 (465)
...++|+.|++.+|. +..+|..+ ..+++|++|++++|...+.+| ..+..+
T Consensus 282 ~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l 360 (549)
T 2z81_A 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360 (549)
T ss_dssp TCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSS
T ss_pred ccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhcc
Confidence 001356666666644 45566655 568889999998887666543 336678
Q ss_pred ccccEEecccCcccccCCC---CCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCcccee
Q 046441 241 RQLQEISIEKCGNLESFPE---GGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSL 317 (465)
Q Consensus 241 ~~L~~L~l~~~~~l~~l~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 317 (465)
++|++|++++| .++.++. .+..+++|++|++++|. ++.+|..++.+++|++|++++|. +..++. ..+++|++|
T Consensus 361 ~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~-~~~~~L~~L 436 (549)
T 2z81_A 361 PSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG-IRVVKT-CIPQTLEVL 436 (549)
T ss_dssp TTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSC-CSCCCT-TSCTTCSEE
T ss_pred ccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCC-cccccc-hhcCCceEE
Confidence 88999999988 5555432 34557789999999884 66788888888899999999884 555443 234689999
Q ss_pred eecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-cccCCC
Q 046441 318 EIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIVDLQ 396 (465)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~ 396 (465)
++++|. +... ...+++|++|++++| .+..+|... .+++|++|++++ ++++.++. .+..++
T Consensus 437 ~Ls~N~-l~~~-------~~~l~~L~~L~Ls~N--~l~~ip~~~--------~l~~L~~L~Ls~-N~l~~~~~~~~~~l~ 497 (549)
T 2z81_A 437 DVSNNN-LDSF-------SLFLPRLQELYISRN--KLKTLPDAS--------LFPVLLVMKISR-NQLKSVPDGIFDRLT 497 (549)
T ss_dssp ECCSSC-CSCC-------CCCCTTCCEEECCSS--CCSSCCCGG--------GCTTCCEEECCS-SCCCCCCTTGGGGCT
T ss_pred ECCCCC-hhhh-------cccCChhcEEECCCC--ccCcCCCcc--------cCccCCEEecCC-CccCCcCHHHHhcCc
Confidence 999987 3322 246789999999998 777777643 567999999999 68888876 588999
Q ss_pred CcceEEecCCC
Q 046441 397 NLTELYLGDCP 407 (465)
Q Consensus 397 ~L~~L~l~~c~ 407 (465)
+|++|++++|+
T Consensus 498 ~L~~L~l~~N~ 508 (549)
T 2z81_A 498 SLQKIWLHTNP 508 (549)
T ss_dssp TCCEEECCSSC
T ss_pred ccCEEEecCCC
Confidence 99999999975
No 23
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=2.2e-24 Score=212.52 Aligned_cols=314 Identities=15% Similarity=0.157 Sum_probs=204.5
Q ss_pred ccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEE
Q 046441 23 SCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEIL 102 (465)
Q Consensus 23 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 102 (465)
+++|++|++++|.. +.+| .++.+++|++|++++| .++.+| ++.+++|++|++++|. +..++ ...+++|++|
T Consensus 41 l~~L~~L~Ls~n~l-~~~~-~l~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~----~~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCHNSSI-TDMT-GIEKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNK-LTNLD----VTPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECCSSCC-CCCT-TGGGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC-CSCCC----CTTCTTCCEE
T ss_pred cCCCCEEEccCCCc-ccCh-hhcccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCC-Cceee----cCCCCcCCEE
Confidence 58899999998876 6666 5788999999999988 567775 7778999999998865 66654 1456889999
Q ss_pred EecCCcCcceecCccCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcchh
Q 046441 103 EIWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPAT 182 (465)
Q Consensus 103 ~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 182 (465)
+++++ .++.++ ...+++|+.|+++++ .++.+ + +.. +++|++|+++++..+.. ++.
T Consensus 112 ~L~~N-~l~~l~-~~~l~~L~~L~l~~N-~l~~l--~--l~~-----------l~~L~~L~l~~n~~~~~-~~~------ 166 (457)
T 3bz5_A 112 NCDTN-KLTKLD-VSQNPLLTYLNCARN-TLTEI--D--VSH-----------NTQLTELDCHLNKKITK-LDV------ 166 (457)
T ss_dssp ECCSS-CCSCCC-CTTCTTCCEEECTTS-CCSCC--C--CTT-----------CTTCCEEECTTCSCCCC-CCC------
T ss_pred ECCCC-cCCeec-CCCCCcCCEEECCCC-cccee--c--ccc-----------CCcCCEEECCCCCcccc-ccc------
Confidence 99887 666664 456678888888875 45544 3 222 57788888888655554 222
Q ss_pred hhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCC
Q 046441 183 LESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGL 262 (465)
Q Consensus 183 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 262 (465)
..+ ++|+.|++++|. +..+| +..+++|+.|++++|.... + .+..+++|++|++++| .++.+| ..
T Consensus 167 ------~~l-~~L~~L~ls~n~-l~~l~--l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N-~l~~ip--~~ 230 (457)
T 3bz5_A 167 ------TPQ-TQLTTLDCSFNK-ITELD--VSQNKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSN-KLTEID--VT 230 (457)
T ss_dssp ------TTC-TTCCEEECCSSC-CCCCC--CTTCTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSS-CCSCCC--CT
T ss_pred ------ccC-CcCCEEECCCCc-cceec--cccCCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCC-cccccC--cc
Confidence 444 788888888864 55555 7788888888888865444 3 3677888888888887 566666 55
Q ss_pred CCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCc
Q 046441 263 PCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSL 342 (465)
Q Consensus 263 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L 342 (465)
.+++|+.|++++|. +..+| ++.+++|+.|+++++ +|+.|++++|......+ ...+++|
T Consensus 231 ~l~~L~~L~l~~N~-l~~~~--~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~------~~~l~~L 288 (457)
T 3bz5_A 231 PLTQLTYFDCSVNP-LTELD--VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ------AEGCRKI 288 (457)
T ss_dssp TCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE------CTTCTTC
T ss_pred ccCCCCEEEeeCCc-CCCcC--HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc------ccccccC
Confidence 66788888888875 44443 345555555554443 33444444444222111 2344555
Q ss_pred cEEEecCCCCcccccccccccccC-CCCCccccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCC
Q 046441 343 RCLAISGCDDDMVSFPLEDKRLGT-ALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFP 413 (465)
Q Consensus 343 ~~L~l~~~~~~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 413 (465)
+.|++++| ..+..++.....+.. .+...++|++|++++ ++++.++ +.++++|++|++++ ++++.++
T Consensus 289 ~~L~Ls~n-~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l~~-N~l~~l~ 355 (457)
T 3bz5_A 289 KELDVTHN-TQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSCVN-AHIQDFS 355 (457)
T ss_dssp CCCCCTTC-TTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEECCS-SCCCBCT
T ss_pred CEEECCCC-cccceeccCCCcceEechhhcccCCEEECCC-Ccccccc--cccCCcCcEEECCC-CCCCCcc
Confidence 55555554 223333322111110 122335778888877 5777764 67788888888887 5666654
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.5e-24 Score=214.72 Aligned_cols=344 Identities=15% Similarity=0.162 Sum_probs=204.0
Q ss_pred cccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCC--CCcCcCcccEEEccCCcccccc-ccccccCCCCC
Q 046441 22 LSCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLKKIRISSCDALKSL-PEAWMCDTNSS 98 (465)
Q Consensus 22 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~ 98 (465)
..++|++|++++|......|..++++++|++|++++|.....++ .++.+++|++|+++++. +..+ +..+ ..+++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~--~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAF--NGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTT--TTCTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhc--cCccc
Confidence 45789999999988734447778889999999999885433454 35668899999998875 5544 3332 34588
Q ss_pred ccEEEecCCcCcce--ecC--ccCCCCccEEeeccccCccccccccc-cccCCCCCCchhhhcccCCeeeccCCCCcccc
Q 046441 99 LEILEIWICCSLTY--IAG--VQLPRSLKRLHILLCNNIRTLTVEEG-IQCSNSSSSSRRYISSLLEHLEIGNCRSLTCI 173 (465)
Q Consensus 99 L~~L~l~~~~~l~~--~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 173 (465)
|++|++++| .+.. ... ...+++|+.|+++++. ++.+ .|.. +.. +++|++|++++ +.+..
T Consensus 105 L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~~-----------l~~L~~L~L~~-n~l~~- 168 (455)
T 3v47_A 105 LEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKI-QPASFFLN-----------MRRFHVLDLTF-NKVKS- 168 (455)
T ss_dssp CCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSB-CCSC-CCCGGGGG-----------CTTCCEEECTT-CCBSC-
T ss_pred CCEEeCCCC-CCCccccCcccccCcccCCEEECCCCc-cCcc-CcccccCC-----------CCcccEEeCCC-Ccccc-
Confidence 999999987 4543 222 2446788889888863 4433 0322 233 67888898888 45554
Q ss_pred ccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhh---------hhcCCCCCcEEecccccccccccccccc---Cc
Q 046441 174 FSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAE---------RLDNNTSLETISILCCENLKILPSGLHN---LR 241 (465)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~---------~~~~l~~L~~L~l~~~~~~~~l~~~~~~---~~ 241 (465)
.... .+..+. . .+|+.|++.++. +..++. .+..+++|++|++++|......+..+.. .+
T Consensus 169 ~~~~----~l~~l~---~-~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 239 (455)
T 3v47_A 169 ICEE----DLLNFQ---G-KHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239 (455)
T ss_dssp CCTT----TSGGGT---T-CEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTC
T ss_pred cChh----hhhccc---c-ccccccccccCc-ccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccc
Confidence 2221 222211 1 468888888865 322221 1335678888888887766555554443 37
Q ss_pred cccEEecccCcccccCCC------------CCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccC-CC
Q 046441 242 QLQEISIEKCGNLESFPE------------GGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLE-ED 308 (465)
Q Consensus 242 ~L~~L~l~~~~~l~~l~~------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~ 308 (465)
+|+.|++++|........ .....++|+.|++++|......|..++.+++|++|++++|......+ ..
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 319 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF 319 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh
Confidence 788888887743321100 01112467777777766544455566667777777777663222222 12
Q ss_pred CCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccc
Q 046441 309 GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERL 388 (465)
Q Consensus 309 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 388 (465)
+.+++|++|++++|. +....+.. +..+++|++|++++| .+..++... +..+++|++|++++ ++++.+
T Consensus 320 ~~l~~L~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~ 386 (455)
T 3v47_A 320 WGLTHLLKLNLSQNF-LGSIDSRM---FENLDKLEVLDLSYN--HIRALGDQS------FLGLPNLKELALDT-NQLKSV 386 (455)
T ss_dssp TTCTTCCEEECCSSC-CCEECGGG---GTTCTTCCEEECCSS--CCCEECTTT------TTTCTTCCEEECCS-SCCSCC
T ss_pred cCcccCCEEECCCCc-cCCcChhH---hcCcccCCEEECCCC--cccccChhh------ccccccccEEECCC-CccccC
Confidence 445666666666665 23232222 455666666666665 444332211 12445666666666 456665
Q ss_pred cc-cccCCCCcceEEecCC
Q 046441 389 SS-SIVDLQNLTELYLGDC 406 (465)
Q Consensus 389 ~~-~~~~l~~L~~L~l~~c 406 (465)
+. .+..+++|++|+++++
T Consensus 387 ~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CTTTTTTCTTCCEEECCSS
T ss_pred CHhHhccCCcccEEEccCC
Confidence 54 3455666666666664
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=1.4e-24 Score=230.62 Aligned_cols=224 Identities=18% Similarity=0.092 Sum_probs=140.2
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCceEE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLR 271 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 271 (465)
++|+.|++++|......+..+..+++|++|++++|......+..+..+++|++|++++| .+..++. .+..+++|+.|+
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEE
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEE
Confidence 78999999997644444566888999999999998766555777888899999999988 5666654 455577888888
Q ss_pred EecCCCcCcccc-----------------------------------------cccCCCcccceeeccCCCCCccCC--C
Q 046441 272 IYGCERLEALPK-----------------------------------------GLHNLKSLQELRIGRGVELPSLEE--D 308 (465)
Q Consensus 272 l~~~~~~~~~~~-----------------------------------------~~~~l~~L~~L~l~~~~~~~~~~~--~ 308 (465)
+++|. +..++. .+..+++|++|++++|......+. .
T Consensus 369 Ls~N~-l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 369 LRDNA-LTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp EETCC-SCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred CCCCC-CCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence 88875 222211 011334444444444421111000 1
Q ss_pred CCCCccceeeecCCccccccc-ccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCcc
Q 046441 309 GLPTNLHSLEIDGNMEIWKST-IEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLER 387 (465)
Q Consensus 309 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 387 (465)
..+++|++|++++|....... ......+.++++|++|++++| .+..++.. .+..+++|++|++++ ++++.
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~------~~~~l~~L~~L~Ls~-N~l~~ 518 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN--YLNSLPPG------VFSHLTALRGLSLNS-NRLTV 518 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH--HHTTCCTT------SSSSCCSCSEEEEES-CCCSS
T ss_pred ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC--cccccChh------HccchhhhheeECCC-CCCCc
Confidence 223445555555544211000 000011445556666666665 44444332 234678999999999 79999
Q ss_pred ccccccCCCCcceEEecCCCCCCcCCCCCCcccccEEeecCCc
Q 046441 388 LSSSIVDLQNLTELYLGDCPKLKYFPEKGLPSSLLRLYIDECP 430 (465)
Q Consensus 388 l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 430 (465)
++..... ++|+.|++++ +.++.++... +++|+.|++.++|
T Consensus 519 l~~~~~~-~~L~~L~Ls~-N~l~~~~~~~-~~~L~~l~l~~Np 558 (844)
T 3j0a_A 519 LSHNDLP-ANLEILDISR-NQLLAPNPDV-FVSLSVLDITHNK 558 (844)
T ss_dssp CCCCCCC-SCCCEEEEEE-ECCCCCCSCC-CSSCCEEEEEEEC
T ss_pred cChhhhh-ccccEEECCC-CcCCCCChhH-hCCcCEEEecCCC
Confidence 8864333 8999999999 6787766644 4689999998754
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2.7e-24 Score=205.02 Aligned_cols=304 Identities=18% Similarity=0.230 Sum_probs=225.2
Q ss_pred cccCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEEEecCCcCcceecCccCCCCcc
Q 046441 44 SLSLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAGVQLPRSLK 123 (465)
Q Consensus 44 ~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~ 123 (465)
+..+++|++|+++++ .+..++.++.+++|++|++++|. +..++.. ..+++|++|++++| .++.++....
T Consensus 40 ~~~l~~L~~L~l~~~-~i~~~~~~~~~~~L~~L~l~~n~-i~~~~~~---~~l~~L~~L~L~~n-~i~~~~~~~~----- 108 (347)
T 4fmz_A 40 QEELESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGNQ-ITDISPL---SNLVKLTNLYIGTN-KITDISALQN----- 108 (347)
T ss_dssp HHHHTTCSEEECCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGGG---TTCTTCCEEECCSS-CCCCCGGGTT-----
T ss_pred chhcccccEEEEeCC-ccccchhhhhcCCccEEEccCCc-cccchhh---hcCCcCCEEEccCC-cccCchHHcC-----
Confidence 456788999999887 66777777778899999998864 6666652 55677888888776 4433322122
Q ss_pred EEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCC
Q 046441 124 RLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGC 203 (465)
Q Consensus 124 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~ 203 (465)
+++|++|++++ +.+.. ++. + ..+ ++|+.|++++|
T Consensus 109 --------------------------------l~~L~~L~l~~-n~i~~-~~~------~-----~~l-~~L~~L~l~~n 142 (347)
T 4fmz_A 109 --------------------------------LTNLRELYLNE-DNISD-ISP------L-----ANL-TKMYSLNLGAN 142 (347)
T ss_dssp --------------------------------CTTCSEEECTT-SCCCC-CGG------G-----TTC-TTCCEEECTTC
T ss_pred --------------------------------CCcCCEEECcC-CcccC-chh------h-----ccC-CceeEEECCCC
Confidence 45566677666 34443 221 1 334 78999999988
Q ss_pred CChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccc
Q 046441 204 PKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPK 283 (465)
Q Consensus 204 ~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 283 (465)
.....++. +..+++|++|++++|.... ++. +..+++|++|++++| .+..++. ...+++|+.+++++|. +..++.
T Consensus 143 ~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~ 216 (347)
T 4fmz_A 143 HNLSDLSP-LSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVNQ-ITDITP 216 (347)
T ss_dssp TTCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCGG
T ss_pred CCcccccc-hhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCC-ccccccc-ccCCCccceeecccCC-CCCCch
Confidence 76655444 8899999999999976544 333 778999999999998 5666655 5567799999999986 444443
Q ss_pred cccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCccccccccccc
Q 046441 284 GLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKR 363 (465)
Q Consensus 284 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~ 363 (465)
+..+++|++|++++|. +..++....+++|++|++++|. +.... . +..+++|++|++++| .+..++...
T Consensus 217 -~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~-~----~~~l~~L~~L~l~~n--~l~~~~~~~-- 284 (347)
T 4fmz_A 217 -VANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQ-ISDIN-A----VKDLTKLKMLNVGSN--QISDISVLN-- 284 (347)
T ss_dssp -GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCG-G----GTTCTTCCEEECCSS--CCCCCGGGG--
T ss_pred -hhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCc-cCCCh-h----HhcCCCcCEEEccCC--ccCCChhhc--
Confidence 7889999999999984 5555556778999999999997 33331 1 678899999999998 666664322
Q ss_pred ccCCCCCccccceEeccCCCCCcccc-ccccCCCCcceEEecCCCCCCcCCCCCCcccccEEeecCCc
Q 046441 364 LGTALPLPACLASLMIGNFPNLERLS-SSIVDLQNLTELYLGDCPKLKYFPEKGLPSSLLRLYIDECP 430 (465)
Q Consensus 364 ~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 430 (465)
.+++|++|++++| .++..+ ..+..+++|++|++++| .++.++....+++|++|++++|+
T Consensus 285 ------~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 285 ------NLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQN-HITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp ------GCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSS-SCCCCGGGGGCTTCSEESSSCC-
T ss_pred ------CCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCC-ccccccChhhhhccceeehhhhc
Confidence 5679999999995 666554 47889999999999996 57777664457999999999885
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=3.9e-24 Score=210.57 Aligned_cols=311 Identities=27% Similarity=0.310 Sum_probs=150.3
Q ss_pred cccceeecccCCCCcccccccccCCCC-------------cEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccc
Q 046441 24 CRLEYLRLRYCEGLVKLPQSSLSLSSL-------------REIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEA 90 (465)
Q Consensus 24 ~~L~~L~l~~~~~l~~l~~~~~~l~~L-------------~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 90 (465)
++|++|++++|.....+|..++.+.+| ++|++++| .++.+|.. .++|++|+++++. ++.++..
T Consensus 34 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~~--~~~L~~L~l~~n~-l~~lp~~ 109 (454)
T 1jl5_A 34 KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPEL--PPHLESLVASCNS-LTELPEL 109 (454)
T ss_dssp CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCSC--CTTCSEEECCSSC-CSSCCCC
T ss_pred cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCCC--cCCCCEEEccCCc-CCccccc
Confidence 556666666655533555555555443 66666665 45555542 3566666666543 4444432
Q ss_pred cccCCCCCccEEEecCCcCcceecCccCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCc
Q 046441 91 WMCDTNSSLEILEIWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSL 170 (465)
Q Consensus 91 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 170 (465)
.++|+.|+++++ .+..++. .+++|+.|+++++ .++.+ | .+.. +++|++|++++ +.+
T Consensus 110 -----~~~L~~L~l~~n-~l~~l~~--~~~~L~~L~L~~n-~l~~l--p-~~~~-----------l~~L~~L~l~~-N~l 165 (454)
T 1jl5_A 110 -----PQSLKSLLVDNN-NLKALSD--LPPLLEYLGVSNN-QLEKL--P-ELQN-----------SSFLKIIDVDN-NSL 165 (454)
T ss_dssp -----CTTCCEEECCSS-CCSCCCS--CCTTCCEEECCSS-CCSSC--C-CCTT-----------CTTCCEEECCS-SCC
T ss_pred -----cCCCcEEECCCC-ccCcccC--CCCCCCEEECcCC-CCCCC--c-ccCC-----------CCCCCEEECCC-CcC
Confidence 145666666665 4444332 2346666666654 34444 4 2332 45566666666 344
Q ss_pred cccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEeccc
Q 046441 171 TCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEK 250 (465)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 250 (465)
+. ++. .+++|++|++++|. +..+| .++.+++|++|++++|...+ +|... ++|++|++++
T Consensus 166 ~~-lp~--------------~~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~ 224 (454)
T 1jl5_A 166 KK-LPD--------------LPPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGN 224 (454)
T ss_dssp SC-CCC--------------CCTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCS
T ss_pred cc-cCC--------------CcccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcC
Confidence 43 221 11456666666543 33344 35556666666666543322 33211 3555555555
Q ss_pred CcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccc
Q 046441 251 CGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTI 330 (465)
Q Consensus 251 ~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 330 (465)
| .++.+|. +..+++|+.|++++|. +..+|.. .++|++|++++|. +..++. .+++|++|++++|. +....
T Consensus 225 n-~l~~lp~-~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~N~-l~~l~~--~~~~L~~L~ls~N~-l~~l~- 293 (454)
T 1jl5_A 225 N-ILEELPE-LQNLPFLTTIYADNNL-LKTLPDL---PPSLEALNVRDNY-LTDLPE--LPQSLTFLDVSENI-FSGLS- 293 (454)
T ss_dssp S-CCSSCCC-CTTCTTCCEEECCSSC-CSSCCSC---CTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CSEES-
T ss_pred C-cCCcccc-cCCCCCCCEEECCCCc-CCccccc---ccccCEEECCCCc-ccccCc--ccCcCCEEECcCCc-cCccc-
Confidence 5 3444442 3344555555555543 3333321 2445555555542 222222 12445555555444 11110
Q ss_pred ccc-------------ccCCCC-CCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccccccCCC
Q 046441 331 EWG-------------RGFHRF-SSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQ 396 (465)
Q Consensus 331 ~~~-------------~~~~~~-~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~ 396 (465)
..+ ..+..+ ++|++|++++| .+..++. .+++|++|++++ ++++.+|. .++
T Consensus 294 ~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N--~l~~lp~----------~~~~L~~L~L~~-N~l~~lp~---~l~ 357 (454)
T 1jl5_A 294 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN--KLIELPA----------LPPRLERLIASF-NHLAEVPE---LPQ 357 (454)
T ss_dssp CCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS--CCSCCCC----------CCTTCCEEECCS-SCCSCCCC---CCT
T ss_pred CcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC--ccccccc----------cCCcCCEEECCC-Cccccccc---hhh
Confidence 000 000111 35555555554 3333333 235677777766 46666664 356
Q ss_pred CcceEEecCCCCCCc
Q 046441 397 NLTELYLGDCPKLKY 411 (465)
Q Consensus 397 ~L~~L~l~~c~~l~~ 411 (465)
+|++|++++| .++.
T Consensus 358 ~L~~L~L~~N-~l~~ 371 (454)
T 1jl5_A 358 NLKQLHVEYN-PLRE 371 (454)
T ss_dssp TCCEEECCSS-CCSS
T ss_pred hccEEECCCC-CCCc
Confidence 6777777763 4444
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.8e-24 Score=217.89 Aligned_cols=354 Identities=15% Similarity=0.098 Sum_probs=229.9
Q ss_pred ccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCcccccc--ccccccCCCCCcc
Q 046441 23 SCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSL--PEAWMCDTNSSLE 100 (465)
Q Consensus 23 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~~~L~ 100 (465)
+++|++|++++|......|..++++++|++|++++| .++.+|.. .+++|++|++++|. +..+ |..+ ...++|+
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l~~L~~L~L~~N~-l~~~~~p~~~--~~l~~L~ 118 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH-PTVNLKHLDLSFNA-FDALPICKEF--GNMSQLK 118 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC-CCCCCSEEECCSSC-CSSCCCCGGG--GGCTTCC
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc-ccCCccEEeccCCc-cccccchhhh--ccCCcce
Confidence 489999999999874455778999999999999998 67788866 79999999999976 5553 3332 4568999
Q ss_pred EEEecCCcCcceecCccCCCCc--cEEeeccccC--ccccccccccccCC---------------CCCCchhhhcccCCe
Q 046441 101 ILEIWICCSLTYIAGVQLPRSL--KRLHILLCNN--IRTLTVEEGIQCSN---------------SSSSSRRYISSLLEH 161 (465)
Q Consensus 101 ~L~l~~~~~l~~~~~~~~~~~L--~~L~l~~c~~--l~~~~~~~~~~~~~---------------~~~~~~~~~~~~L~~ 161 (465)
+|+++++ .+.. .....+++| +.|+++++.- .... |..+.... .........+++|+.
T Consensus 119 ~L~L~~n-~l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~--~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~ 194 (520)
T 2z7x_B 119 FLGLSTT-HLEK-SSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194 (520)
T ss_dssp EEEEEES-SCCG-GGGGGGTTSCEEEEEEEECTTTTSSCC--TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEE
T ss_pred EEEecCc-ccch-hhccccccceeeEEEeecccccccccc--cccccccccceEEEEeccCcchhhhhhhhhhcccceee
Confidence 9999997 4543 222445567 8888887643 1222 32222210 000000111344555
Q ss_pred eeccCCCC------cccccc-------------------CCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhh---
Q 046441 162 LEIGNCRS------LTCIFS-------------------KNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERL--- 213 (465)
Q Consensus 162 L~l~~c~~------l~~~~~-------------------~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~--- 213 (465)
++++++.. +...++ ...+....... .. ++|++|++++|...+.+|..+
T Consensus 195 L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~---~~-~~L~~L~l~~n~l~~~~p~~~~~~ 270 (520)
T 2z7x_B 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV---WH-TTVWYFSISNVKLQGQLDFRDFDY 270 (520)
T ss_dssp CCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH---HT-SSCSEEEEEEEEEESCCCCCCCCC
T ss_pred ccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh---hh-CcccEEEeecccccCccccchhhc
Confidence 55544210 000000 00000000000 01 356666666544222444444
Q ss_pred --cCCCCCcEEecc--------------------------ccccccccccccccCccccEEecccCcccccCCCCCCCCC
Q 046441 214 --DNNTSLETISIL--------------------------CCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCA 265 (465)
Q Consensus 214 --~~l~~L~~L~l~--------------------------~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 265 (465)
+.+++|+.++++ +|..... + ....+++|++|++++|..-..++..+..++
T Consensus 271 ~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 348 (520)
T 2z7x_B 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM-L-CPSKISPFLHLDFSNNLLTDTVFENCGHLT 348 (520)
T ss_dssp CSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCCCS
T ss_pred ccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc-c-chhhCCcccEEEeECCccChhhhhhhccCC
Confidence 445555555544 4332211 1 125789999999999954444677777889
Q ss_pred CCceEEEecCCCcC--cccccccCCCcccceeeccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCCCC
Q 046441 266 KLSKLRIYGCERLE--ALPKGLHNLKSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSS 341 (465)
Q Consensus 266 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 341 (465)
+|+.|++++|.... .+|..++.+++|++|++++|.....++. ...+++|++|++++|......+.. + .++
T Consensus 349 ~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----l--~~~ 422 (520)
T 2z7x_B 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC----L--PPR 422 (520)
T ss_dssp SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS----C--CTT
T ss_pred CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh----h--ccc
Confidence 99999999987443 4556789999999999999864443653 356789999999999843332222 1 279
Q ss_pred ccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCcccccc-ccCCCCcceEEecCCC
Q 046441 342 LRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSS-IVDLQNLTELYLGDCP 407 (465)
Q Consensus 342 L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~ 407 (465)
|++|++++| .+..+|.... .+++|++|++++ ++++.+|.. +..+++|++|++++++
T Consensus 423 L~~L~Ls~N--~l~~ip~~~~-------~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 423 IKVLDLHSN--KIKSIPKQVV-------KLEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCEEECCSS--CCCCCCGGGG-------GCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCC--cccccchhhh-------cCCCCCEEECCC-CcCCccCHHHhccCCcccEEECcCCC
Confidence 999999998 7777776542 567999999999 599999985 8889999999999964
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=2.4e-23 Score=206.10 Aligned_cols=357 Identities=15% Similarity=0.114 Sum_probs=245.1
Q ss_pred ceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCC--CCcCcCcccEEEccCCccccccccccccCCCCCccEEEe
Q 046441 27 EYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEI 104 (465)
Q Consensus 27 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 104 (465)
+.++.+++.. +.+|. + .++|++|++++| .++.++ .++.+++|++|+++++.....++.... ..+++|++|++
T Consensus 13 ~~~~c~~~~l-~~lp~-l--~~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~-~~l~~L~~L~L 86 (455)
T 3v47_A 13 YNAICINRGL-HQVPE-L--PAHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF-RGLSSLIILKL 86 (455)
T ss_dssp TEEECCSSCC-SSCCC-C--CTTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTT-TTCTTCCEEEC
T ss_pred cccCcCCCCc-ccCCC-C--CCccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccc-cccccCCEEeC
Confidence 3455555544 77886 2 388999999998 556653 467799999999999764334443322 45699999999
Q ss_pred cCCcCcceecCc--cCCCCccEEeeccccCccc-cccccc--cccCCCCCCchhhhcccCCeeeccCCCCccccccCCCc
Q 046441 105 WICCSLTYIAGV--QLPRSLKRLHILLCNNIRT-LTVEEG--IQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNEL 179 (465)
Q Consensus 105 ~~~~~l~~~~~~--~~~~~L~~L~l~~c~~l~~-~~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 179 (465)
+++ .+..+... ..+++|+.|++++|. ++. . +.. +.. +++|++|++++ +.+.. .....
T Consensus 87 s~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~--~~~~~~~~-----------l~~L~~L~L~~-n~l~~-~~~~~- 148 (455)
T 3v47_A 87 DYN-QFLQLETGAFNGLANLEVLTLTQCN-LDGAV--LSGNFFKP-----------LTSLEMLVLRD-NNIKK-IQPAS- 148 (455)
T ss_dssp TTC-TTCEECTTTTTTCTTCCEEECTTSC-CBTHH--HHSSTTTT-----------CTTCCEEECCS-SBCCS-CCCCG-
T ss_pred CCC-ccCccChhhccCcccCCEEeCCCCC-CCccc--cCcccccC-----------cccCCEEECCC-CccCc-cCccc-
Confidence 998 56666433 557899999999864 443 2 222 332 68899999998 56665 22111
Q ss_pred chhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCC--CCCcEEecccccccccccc--------ccccCccccEEecc
Q 046441 180 PATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNN--TSLETISILCCENLKILPS--------GLHNLRQLQEISIE 249 (465)
Q Consensus 180 ~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l--~~L~~L~l~~~~~~~~l~~--------~~~~~~~L~~L~l~ 249 (465)
.+ ..+ ++|++|++++|......+..+..+ .+|+.|+++++......+. .+..+++|++|+++
T Consensus 149 --~~-----~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 220 (455)
T 3v47_A 149 --FF-----LNM-RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220 (455)
T ss_dssp --GG-----GGC-TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECT
T ss_pred --cc-----CCC-CcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecC
Confidence 12 334 789999999976444445555554 6889999998765442221 23356889999999
Q ss_pred cCcccccCCCCC---CCCCCCceEEEecCCCcCccc----------cccc--CCCcccceeeccCCCCCccCC-CCCCCc
Q 046441 250 KCGNLESFPEGG---LPCAKLSKLRIYGCERLEALP----------KGLH--NLKSLQELRIGRGVELPSLEE-DGLPTN 313 (465)
Q Consensus 250 ~~~~l~~l~~~~---~~~~~L~~L~l~~~~~~~~~~----------~~~~--~l~~L~~L~l~~~~~~~~~~~-~~~~~~ 313 (465)
+|......+..+ ...++|+.|++++|....... ..+. ..++|++|++++|......+. .+.+++
T Consensus 221 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 300 (455)
T 3v47_A 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD 300 (455)
T ss_dssp TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCC
Confidence 984433333211 123589999998875332110 1111 236899999999854444343 467889
Q ss_pred cceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccc-cccc
Q 046441 314 LHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERL-SSSI 392 (465)
Q Consensus 314 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~ 392 (465)
|++|++++|. +....+.. +..+++|++|++++| .+..++... +..+++|++|++++ ++++.+ +..+
T Consensus 301 L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~~ 367 (455)
T 3v47_A 301 LEQLTLAQNE-INKIDDNA---FWGLTHLLKLNLSQN--FLGSIDSRM------FENLDKLEVLDLSY-NHIRALGDQSF 367 (455)
T ss_dssp CCEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS--CCCEECGGG------GTTCTTCCEEECCS-SCCCEECTTTT
T ss_pred CCEEECCCCc-ccccChhH---hcCcccCCEEECCCC--ccCCcChhH------hcCcccCCEEECCC-CcccccChhhc
Confidence 9999999998 44333332 678999999999998 665554322 23678999999999 588877 4578
Q ss_pred cCCCCcceEEecCCCCCCcCCCCC--CcccccEEeecCC
Q 046441 393 VDLQNLTELYLGDCPKLKYFPEKG--LPSSLLRLYIDEC 429 (465)
Q Consensus 393 ~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~c 429 (465)
..+++|++|++++ +.++.++... .+++|++|++++|
T Consensus 368 ~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 368 LGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp TTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cccccccEEECCC-CccccCCHhHhccCCcccEEEccCC
Confidence 8999999999999 6788888744 3689999999875
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=5.4e-23 Score=212.11 Aligned_cols=373 Identities=17% Similarity=0.200 Sum_probs=231.0
Q ss_pred ccccceeecccCCCCcccc-cccccCCCCcEEEecCCCCCCCCCC--CcCcCcccEEEccCCccccccccccccCCCCCc
Q 046441 23 SCRLEYLRLRYCEGLVKLP-QSSLSLSSLREIEICKCSSLVSFPE--VALPSKLKKIRISSCDALKSLPEAWMCDTNSSL 99 (465)
Q Consensus 23 ~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 99 (465)
++++++|+|++|.. +.++ ..|.++++|++|++++| .++.+++ ++.+++|++|+++++. ++.++.... .++++|
T Consensus 51 p~~~~~LdLs~N~i-~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f-~~L~~L 126 (635)
T 4g8a_A 51 PFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF-SGLSSL 126 (635)
T ss_dssp CTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGG-TTCTTC
T ss_pred CcCCCEEEeeCCCC-CCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHh-cCCCCC
Confidence 45789999999887 6665 46889999999999988 6777763 5668999999999975 777776532 456889
Q ss_pred cEEEecCCcCcceecCc--cCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCC
Q 046441 100 EILEIWICCSLTYIAGV--QLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKN 177 (465)
Q Consensus 100 ~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 177 (465)
++|+++++ .++.++.. ..+++|+.|+++++ .++.+..|..+.. +++|++|++++ +.++. +...
T Consensus 127 ~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~-----------l~~L~~L~L~~-N~l~~-~~~~ 191 (635)
T 4g8a_A 127 QKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSN-----------LTNLEHLDLSS-NKIQS-IYCT 191 (635)
T ss_dssp CEEECTTS-CCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGG-----------CTTCCEEECCS-SCCCE-ECGG
T ss_pred CEEECCCC-cCCCCChhhhhcCcccCeeccccC-ccccCCCchhhcc-----------chhhhhhcccC-ccccc-cccc
Confidence 99999997 67777654 55688999998885 4554433444443 56777777776 44443 1111
Q ss_pred Ccchh----------------hhhccc---------------------------CCC-----------------------
Q 046441 178 ELPAT----------------LESLEV---------------------------GNL----------------------- 191 (465)
Q Consensus 178 ~~~~~----------------~~~l~~---------------------------~~~----------------------- 191 (465)
.+... +..+.. ..+
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence 11000 000000 000
Q ss_pred ---------------------------------CCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccc------
Q 046441 192 ---------------------------------PPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKI------ 232 (465)
Q Consensus 192 ---------------------------------~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~------ 232 (465)
..+++.+.+.++. +..+ ..+....+|+.|++.++.....
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 349 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IERV-KDFSYNFGWQHLELVNCKFGQFPTLKLK 349 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EEEC-GGGGSCCCCSEEEEESCEESSCCCCBCT
T ss_pred ccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-cccc-cccccchhhhhhhcccccccCcCcccch
Confidence 0111111111111 0000 0122233455555544321110
Q ss_pred -------------cccccccCccccEEecccCcc-------------------------cccCCCCCCCCCCCceEEEec
Q 046441 233 -------------LPSGLHNLRQLQEISIEKCGN-------------------------LESFPEGGLPCAKLSKLRIYG 274 (465)
Q Consensus 233 -------------l~~~~~~~~~L~~L~l~~~~~-------------------------l~~l~~~~~~~~~L~~L~l~~ 274 (465)
.+.....+++|+.|+++++.. ...++.....+++|+.+++..
T Consensus 350 ~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 350 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp TCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTT
T ss_pred hhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhh
Confidence 011122355666666665522 112223334455666666666
Q ss_pred CCCcCccc-ccccCCCcccceeeccCCCCCccCC-CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCC
Q 046441 275 CERLEALP-KGLHNLKSLQELRIGRGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDD 352 (465)
Q Consensus 275 ~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 352 (465)
+......+ ..+..+++++.++++.|......+. ...++++++|++++|.......+.. +..+++|++|++++|
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~---~~~l~~L~~L~Ls~N-- 504 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQC-- 504 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECTTS--
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchh---hhhccccCEEECCCC--
Confidence 54433332 2456677788888877743322222 3567899999999998665555444 778999999999998
Q ss_pred cccccccccccccCCCCCccccceEeccCCCCCccccc-cccCCCCcceEEecCCCCCCcCCCCCC---cccccEEeecC
Q 046441 353 DMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGDCPKLKYFPEKGL---PSSLLRLYIDE 428 (465)
Q Consensus 353 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~l~~ 428 (465)
.+..++... +..+++|++|++++ ++++.++. .+..+++|++|++++ ++++.++...+ +++|++|++++
T Consensus 505 ~L~~l~~~~------f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 505 QLEQLSPTA------FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CCCEECTTT------TTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred ccCCcChHH------HcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 676665422 34678999999999 69999876 688999999999999 67888766433 47899999986
Q ss_pred C
Q 046441 429 C 429 (465)
Q Consensus 429 c 429 (465)
+
T Consensus 577 N 577 (635)
T 4g8a_A 577 N 577 (635)
T ss_dssp C
T ss_pred C
Confidence 4
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2.5e-23 Score=204.79 Aligned_cols=321 Identities=25% Similarity=0.279 Sum_probs=158.8
Q ss_pred ccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEEEe
Q 046441 25 RLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEI 104 (465)
Q Consensus 25 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 104 (465)
++++|++++|.. +.+|.. .++|++|++++| .++.+|.. +++|++|+++++. +..++.. .++|++|++
T Consensus 72 ~l~~L~l~~~~l-~~lp~~---~~~L~~L~l~~n-~l~~lp~~--~~~L~~L~l~~n~-l~~l~~~-----~~~L~~L~L 138 (454)
T 1jl5_A 72 QAHELELNNLGL-SSLPEL---PPHLESLVASCN-SLTELPEL--PQSLKSLLVDNNN-LKALSDL-----PPLLEYLGV 138 (454)
T ss_dssp TCSEEECTTSCC-SCCCSC---CTTCSEEECCSS-CCSSCCCC--CTTCCEEECCSSC-CSCCCSC-----CTTCCEEEC
T ss_pred CCCEEEecCCcc-ccCCCC---cCCCCEEEccCC-cCCccccc--cCCCcEEECCCCc-cCcccCC-----CCCCCEEEC
Confidence 456677766654 555542 355666666655 34444431 3555555555532 3333322 134555555
Q ss_pred cCCcCcceecCccCCCCccEEeeccccCcccccccc-------------------ccccCCCCCCchhhhcccCCeeecc
Q 046441 105 WICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEE-------------------GIQCSNSSSSSRRYISSLLEHLEIG 165 (465)
Q Consensus 105 ~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~~L~~L~l~ 165 (465)
+++ .++.++....+++|+.|+++++ .++.+ |. .+.. +++|++|+++
T Consensus 139 ~~n-~l~~lp~~~~l~~L~~L~l~~N-~l~~l--p~~~~~L~~L~L~~n~l~~l~~~~~-----------l~~L~~L~l~ 203 (454)
T 1jl5_A 139 SNN-QLEKLPELQNSSFLKIIDVDNN-SLKKL--PDLPPSLEFIAAGNNQLEELPELQN-----------LPFLTAIYAD 203 (454)
T ss_dssp CSS-CCSSCCCCTTCTTCCEEECCSS-CCSCC--CCCCTTCCEEECCSSCCSSCCCCTT-----------CTTCCEEECC
T ss_pred cCC-CCCCCcccCCCCCCCEEECCCC-cCccc--CCCcccccEEECcCCcCCcCccccC-----------CCCCCEEECC
Confidence 554 3444443334445555555543 23333 22 1211 3445555555
Q ss_pred CCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccE
Q 046441 166 NCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQE 245 (465)
Q Consensus 166 ~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 245 (465)
+ +.++. + ...+++|++|++++|. +..+|. ++.+++|++|++++|... .+|.. .++|++
T Consensus 204 ~-N~l~~-l--------------~~~~~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~ 261 (454)
T 1jl5_A 204 N-NSLKK-L--------------PDLPLSLESIVAGNNI-LEELPE-LQNLPFLTTIYADNNLLK-TLPDL---PPSLEA 261 (454)
T ss_dssp S-SCCSS-C--------------CCCCTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSCCS-SCCSC---CTTCCE
T ss_pred C-CcCCc-C--------------CCCcCcccEEECcCCc-CCcccc-cCCCCCCCEEECCCCcCC-ccccc---ccccCE
Confidence 4 23322 1 1122466777776653 445553 666777777777765433 24432 356777
Q ss_pred EecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCccc
Q 046441 246 ISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEI 325 (465)
Q Consensus 246 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 325 (465)
|++++| .++.++.. +++|+.|++++|. +..++.. .++|++|++++|. +..++ ..+++|++|++++|. +
T Consensus 262 L~l~~N-~l~~l~~~---~~~L~~L~ls~N~-l~~l~~~---~~~L~~L~l~~N~-l~~i~--~~~~~L~~L~Ls~N~-l 329 (454)
T 1jl5_A 262 LNVRDN-YLTDLPEL---PQSLTFLDVSENI-FSGLSEL---PPNLYYLNASSNE-IRSLC--DLPPSLEELNVSNNK-L 329 (454)
T ss_dssp EECCSS-CCSCCCCC---CTTCCEEECCSSC-CSEESCC---CTTCCEEECCSSC-CSEEC--CCCTTCCEEECCSSC-C
T ss_pred EECCCC-cccccCcc---cCcCCEEECcCCc-cCcccCc---CCcCCEEECcCCc-CCccc--CCcCcCCEEECCCCc-c
Confidence 777766 44545442 2467777777764 3333321 2567777777763 33333 234688999998887 3
Q ss_pred ccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCcc---ccccccCC-------
Q 046441 326 WKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLER---LSSSIVDL------- 395 (465)
Q Consensus 326 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~---l~~~~~~l------- 395 (465)
.... ..+++|++|++++| .+..+|. .+++|++|++++ ++++. +|.++..+
T Consensus 330 ~~lp-------~~~~~L~~L~L~~N--~l~~lp~----------~l~~L~~L~L~~-N~l~~l~~ip~~l~~L~~n~~~~ 389 (454)
T 1jl5_A 330 IELP-------ALPPRLERLIASFN--HLAEVPE----------LPQNLKQLHVEY-NPLREFPDIPESVEDLRMNSHLA 389 (454)
T ss_dssp SCCC-------CCCTTCCEEECCSS--CCSCCCC----------CCTTCCEEECCS-SCCSSCCCCCTTCCEEECCC---
T ss_pred cccc-------ccCCcCCEEECCCC--ccccccc----------hhhhccEEECCC-CCCCcCCCChHHHHhhhhccccc
Confidence 3321 13589999999998 6666665 347999999999 57776 44555555
Q ss_pred ------CCcceEEecCCCCCCcCCCCCCcccccEEeecCCc
Q 046441 396 ------QNLTELYLGDCPKLKYFPEKGLPSSLLRLYIDECP 430 (465)
Q Consensus 396 ------~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~ 430 (465)
++|++|++++ +.++.++. .+++++.|.+.+|.
T Consensus 390 ~i~~~~~~L~~L~ls~-N~l~~~~~--iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 390 EVPELPQNLKQLHVET-NPLREFPD--IPESVEDLRMNSER 427 (454)
T ss_dssp -----------------------------------------
T ss_pred ccccccCcCCEEECCC-CcCCcccc--chhhHhheeCcCcc
Confidence 7889999988 55665544 56778888887763
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=6.7e-23 Score=204.08 Aligned_cols=312 Identities=18% Similarity=0.187 Sum_probs=203.4
Q ss_pred cEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEEEecCCcCcceecCc--cCCCCccEEeec
Q 046441 51 REIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAGV--QLPRSLKRLHIL 128 (465)
Q Consensus 51 ~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~ 128 (465)
+.++.++. .+..+|. +..++++.|+++++. +..++.... ..+++|++|+++++ .+..+... ..+++|+.|+++
T Consensus 14 ~~v~c~~~-~l~~ip~-~~~~~l~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRK-RFVAVPE-GIPTETRLLDLGKNR-IKTLNQDEF-ASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSC-CCSSCCS-CCCTTCSEEECCSSC-CCEECTTTT-TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCC-CcCcCCC-CCCCCCcEEECCCCc-cceECHhHc-cCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECC
Confidence 45555543 6777774 346789999999865 666654322 45688999999987 67666443 456788888888
Q ss_pred cccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhh
Q 046441 129 LCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLES 208 (465)
Q Consensus 129 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~ 208 (465)
++ .++.+ |...... +++|++|++++ +.+.. .....+ ..+ ++|++|++.+|.....
T Consensus 89 ~n-~l~~~--~~~~~~~----------l~~L~~L~Ls~-n~i~~-~~~~~~---------~~l-~~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 89 SN-RLKLI--PLGVFTG----------LSNLTKLDISE-NKIVI-LLDYMF---------QDL-YNLKSLEVGDNDLVYI 143 (477)
T ss_dssp SS-CCCSC--CTTSSTT----------CTTCCEEECTT-SCCCE-ECTTTT---------TTC-TTCCEEEECCTTCCEE
T ss_pred CC-cCCcc--CcccccC----------CCCCCEEECCC-Ccccc-CChhHc---------ccc-ccCCEEECCCCcccee
Confidence 74 46655 5443211 57788888887 55555 222111 344 6788888888653333
Q ss_pred hhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCceEEEecCCCcCcccccccC
Q 046441 209 IAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYGCERLEALPKGLHN 287 (465)
Q Consensus 209 ~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 287 (465)
.+..+..+++|++|++++|......+..+..+++|+.|++++| .+..++. .+..+++|+.|++++|.....++.....
T Consensus 144 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 222 (477)
T 2id5_A 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222 (477)
T ss_dssp CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCccccc
Confidence 3456778888888888887554433445677888888888887 4444443 5556778888888888777777666656
Q ss_pred CCcccceeeccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCccccccccccccc
Q 046441 288 LKSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLG 365 (465)
Q Consensus 288 l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~ 365 (465)
..+|++|++++| .+..++. ...+++|++|++++|. +....... +..+++|++|++++| .+..+....
T Consensus 223 ~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~n--~l~~~~~~~---- 291 (477)
T 2id5_A 223 GLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM---LHELLRLQEIQLVGG--QLAVVEPYA---- 291 (477)
T ss_dssp TCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTS---CTTCTTCCEEECCSS--CCSEECTTT----
T ss_pred CccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccChhh---ccccccCCEEECCCC--ccceECHHH----
Confidence 667888888877 3444442 3556778888888776 33333222 567777888888776 444443211
Q ss_pred CCCCCccccceEeccCCCCCccccc-cccCCCCcceEEecCCC
Q 046441 366 TALPLPACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGDCP 407 (465)
Q Consensus 366 ~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 407 (465)
+..+++|++|++++ ++++.++. .+..+++|++|++++++
T Consensus 292 --~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 292 --FRGLNYLRVLNVSG-NQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp --BTTCTTCCEEECCS-SCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred --hcCcccCCEEECCC-CcCceeCHhHcCCCcccCEEEccCCC
Confidence 23456777888877 47777765 45667777777777743
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=6.2e-23 Score=198.81 Aligned_cols=236 Identities=16% Similarity=0.138 Sum_probs=152.8
Q ss_pred cccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEecccccccccccc
Q 046441 156 SSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPS 235 (465)
Q Consensus 156 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~ 235 (465)
+++|++|++++ +.++. ++...+ ..+ ++|++|++++|......+..+..+++|++|++++|.... +
T Consensus 116 l~~L~~L~L~~-n~l~~-l~~~~~---------~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~-- 180 (390)
T 3o6n_A 116 VPLLTVLVLER-NDLSS-LPRGIF---------HNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V-- 180 (390)
T ss_dssp CTTCCEEECCS-SCCCC-CCTTTT---------TTC-TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C--
T ss_pred CCCCCEEECCC-CccCc-CCHHHh---------cCC-CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c--
Confidence 45566666666 34443 322111 223 567777776654322223346667777777777754433 2
Q ss_pred ccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccc
Q 046441 236 GLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLH 315 (465)
Q Consensus 236 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 315 (465)
.+..+++|++|++++| .+..++ ..++|+.|++++|. +..+|. ...++|++|++++|. +...+..+.+++|+
T Consensus 181 ~~~~l~~L~~L~l~~n-~l~~~~----~~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~ 251 (390)
T 3o6n_A 181 DLSLIPSLFHANVSYN-LLSTLA----IPIAVEELDASHNS-INVVRG--PVNVELTILKLQHNN-LTDTAWLLNYPGLV 251 (390)
T ss_dssp CGGGCTTCSEEECCSS-CCSEEE----CCSSCSEEECCSSC-CCEEEC--CCCSSCCEEECCSSC-CCCCGGGGGCTTCS
T ss_pred ccccccccceeecccc-cccccC----CCCcceEEECCCCe-eeeccc--cccccccEEECCCCC-CcccHHHcCCCCcc
Confidence 2445677777777776 344332 22367777777764 444443 234678888888773 44444456677888
Q ss_pred eeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccccccCC
Q 046441 316 SLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDL 395 (465)
Q Consensus 316 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l 395 (465)
+|++++|. +....+.. +..+++|++|++++| .+..++... ..+++|++|++++ ++++.+|..+..+
T Consensus 252 ~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~n--~l~~~~~~~-------~~l~~L~~L~L~~-n~l~~~~~~~~~l 317 (390)
T 3o6n_A 252 EVDLSYNE-LEKIMYHP---FVKMQRLERLYISNN--RLVALNLYG-------QPIPTLKVLDLSH-NHLLHVERNQPQF 317 (390)
T ss_dssp EEECCSSC-CCEEESGG---GTTCSSCCEEECCSS--CCCEEECSS-------SCCTTCCEEECCS-SCCCCCGGGHHHH
T ss_pred EEECCCCc-CCCcChhH---ccccccCCEEECCCC--cCcccCccc-------CCCCCCCEEECCC-CcceecCcccccc
Confidence 88888886 33333322 677889999999987 666665533 3567999999999 5888888878889
Q ss_pred CCcceEEecCCCCCCcCCCCCCcccccEEeecCCch
Q 046441 396 QNLTELYLGDCPKLKYFPEKGLPSSLLRLYIDECPL 431 (465)
Q Consensus 396 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~ 431 (465)
++|++|++++ +.++.++.. .+++|++|++++++-
T Consensus 318 ~~L~~L~L~~-N~i~~~~~~-~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 318 DRLENLYLDH-NSIVTLKLS-THHTLKNLTLSHNDW 351 (390)
T ss_dssp TTCSEEECCS-SCCCCCCCC-TTCCCSEEECCSSCE
T ss_pred CcCCEEECCC-CccceeCch-hhccCCEEEcCCCCc
Confidence 9999999999 468887643 458999999998753
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=8.3e-23 Score=207.54 Aligned_cols=152 Identities=15% Similarity=0.176 Sum_probs=119.9
Q ss_pred ccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCc---ccccccCCCcccceeeccCCCCCccCC--CCCCC
Q 046441 238 HNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEA---LPKGLHNLKSLQELRIGRGVELPSLEE--DGLPT 312 (465)
Q Consensus 238 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~ 312 (465)
..+++|++|++++|...+.++..+..+++|+.|++++|. ++. +|..++.+++|++|++++|.....++. ...++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 567899999999985444466677788899999999986 443 345688999999999999964443554 35678
Q ss_pred ccceeeecCCcccccccccccccCCCC-CCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCcccccc
Q 046441 313 NLHSLEIDGNMEIWKSTIEWGRGFHRF-SSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSS 391 (465)
Q Consensus 313 ~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 391 (465)
+|++|++++|......+ ..+ ++|++|++++| .+..+|... ..+++|++|++++ ++++.+|..
T Consensus 429 ~L~~L~l~~n~l~~~~~-------~~l~~~L~~L~L~~N--~l~~ip~~~-------~~l~~L~~L~L~~-N~l~~l~~~ 491 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVF-------RCLPPKVKVLDLHNN--RIMSIPKDV-------THLQALQELNVAS-NQLKSVPDG 491 (562)
T ss_dssp TCCEEECCSSCCCGGGG-------SSCCTTCSEEECCSS--CCCCCCTTT-------TSSCCCSEEECCS-SCCCCCCTT
T ss_pred cCCEEECCCCCCCcchh-------hhhcCcCCEEECCCC--cCcccChhh-------cCCCCCCEEECCC-CCCCCCCHH
Confidence 99999999998433222 233 69999999998 777777654 2667999999999 699999986
Q ss_pred -ccCCCCcceEEecCCC
Q 046441 392 -IVDLQNLTELYLGDCP 407 (465)
Q Consensus 392 -~~~l~~L~~L~l~~c~ 407 (465)
+..+++|+.|++++++
T Consensus 492 ~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp STTTCTTCCCEECCSCC
T ss_pred HHhcCCCCCEEEecCCC
Confidence 8899999999999964
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.3e-22 Score=199.82 Aligned_cols=307 Identities=17% Similarity=0.172 Sum_probs=200.9
Q ss_pred ccccccCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEEEecCCcCcceecCccCCC
Q 046441 41 PQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAGVQLPR 120 (465)
Q Consensus 41 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 120 (465)
+..++++++|++|++++| .++.+|.++.+++|++|+++++. +..++ . ..+++|++|+++++ .++.++ ...++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~-~---~~l~~L~~L~Ls~N-~l~~~~-~~~l~ 106 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNN-ITTLD-L---SQNTNLTYLACDSN-KLTNLD-VTPLT 106 (457)
T ss_dssp EEEHHHHTTCCEEECCSS-CCCCCTTGGGCTTCSEEECCSSC-CSCCC-C---TTCTTCSEEECCSS-CCSCCC-CTTCT
T ss_pred ccChhHcCCCCEEEccCC-CcccChhhcccCCCCEEEccCCc-CCeEc-c---ccCCCCCEEECcCC-CCceee-cCCCC
Confidence 345778999999999998 67788888889999999999975 77664 1 45688999999997 566654 45567
Q ss_pred CccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEe
Q 046441 121 SLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDI 200 (465)
Q Consensus 121 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l 200 (465)
+|+.|+++++ .++.+ | +.. +++|++|++++ +.++. ++. +.+ ++|++|++
T Consensus 107 ~L~~L~L~~N-~l~~l--~--~~~-----------l~~L~~L~l~~-N~l~~-l~l------------~~l-~~L~~L~l 155 (457)
T 3bz5_A 107 KLTYLNCDTN-KLTKL--D--VSQ-----------NPLLTYLNCAR-NTLTE-IDV------------SHN-TQLTELDC 155 (457)
T ss_dssp TCCEEECCSS-CCSCC--C--CTT-----------CTTCCEEECTT-SCCSC-CCC------------TTC-TTCCEEEC
T ss_pred cCCEEECCCC-cCCee--c--CCC-----------CCcCCEEECCC-Cccce-ecc------------ccC-CcCCEEEC
Confidence 7888888775 45544 3 222 56777777777 45554 221 344 66777777
Q ss_pred cCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCc
Q 046441 201 YGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEA 280 (465)
Q Consensus 201 ~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~ 280 (465)
++|..++.+ .+..+++|++|++++|.... +| +..+++|++|++++| .++.++ +..+++|+.|++++|. +..
T Consensus 156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N-~l~~~~--l~~l~~L~~L~Ls~N~-l~~ 226 (457)
T 3bz5_A 156 HLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTN-NITKLD--LNQNIQLTFLDCSSNK-LTE 226 (457)
T ss_dssp TTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSC
T ss_pred CCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCC-cCCeec--cccCCCCCEEECcCCc-ccc
Confidence 776555544 35667777777777754333 43 556677777777766 444442 3445567777777664 344
Q ss_pred ccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccc
Q 046441 281 LPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLE 360 (465)
Q Consensus 281 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~ 360 (465)
+| ++.+++|+.|++++|. +..++ .+.+++|+.|+++++ +|+.|++++| .....+|.
T Consensus 227 ip--~~~l~~L~~L~l~~N~-l~~~~-~~~l~~L~~L~l~~n------------------~L~~L~l~~n-~~~~~~~~- 282 (457)
T 3bz5_A 227 ID--VTPLTQLTYFDCSVNP-LTELD-VSTLSKLTTLHCIQT------------------DLLEIDLTHN-TQLIYFQA- 282 (457)
T ss_dssp CC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEECTTC------------------CCSCCCCTTC-TTCCEEEC-
T ss_pred cC--ccccCCCCEEEeeCCc-CCCcC-HHHCCCCCEEeccCC------------------CCCEEECCCC-ccCCcccc-
Confidence 54 5666677777776663 33333 234456666654432 3455555554 22333332
Q ss_pred cccccCCCCCccccceEeccCCCCCccccc--------cccCCCCcceEEecCCCCCCcCCCCCCcccccEEeecCC
Q 046441 361 DKRLGTALPLPACLASLMIGNFPNLERLSS--------SIVDLQNLTELYLGDCPKLKYFPEKGLPSSLLRLYIDEC 429 (465)
Q Consensus 361 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--------~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c 429 (465)
..+++|++|++++|+.++.+|. .+.++++|++|++++ +.++.++ ...+++|++|+++++
T Consensus 283 --------~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~-l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 283 --------EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTELD-VSHNTKLKSLSCVNA 349 (457)
T ss_dssp --------TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCC-CTTCTTCSEEECCSS
T ss_pred --------cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC-Ccccccc-cccCCcCcEEECCCC
Confidence 2457899999999876666553 245667888888888 5677775 334689999999876
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=4.8e-22 Score=197.85 Aligned_cols=302 Identities=21% Similarity=0.248 Sum_probs=174.3
Q ss_pred cccccccccCCCCcEEEecCCCCCCCCC--CCcCcCcccEEEccCCccccccccccccCCCCCccEEEecCCcCcceecC
Q 046441 38 VKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAG 115 (465)
Q Consensus 38 ~~l~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 115 (465)
+.+|..+ .+++++|++++| .++.++ .++.+++|++|+++++. +..+..... ..+++|++|+++++ .++.++.
T Consensus 24 ~~ip~~~--~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~ 97 (477)
T 2id5_A 24 VAVPEGI--PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAF-NNLFNLRTLGLRSN-RLKLIPL 97 (477)
T ss_dssp SSCCSCC--CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSS-CCCSCCT
T ss_pred CcCCCCC--CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChhhh-hCCccCCEEECCCC-cCCccCc
Confidence 4455433 245666666655 344443 24445666666666543 443322211 23455666666654 4554443
Q ss_pred c--cCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCCCC
Q 046441 116 V--QLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPP 193 (465)
Q Consensus 116 ~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~ 193 (465)
. ..+++|+.|+++++ .++.+ .+..+.. +++|++|++++ +.+.. +....+ ..+ +
T Consensus 98 ~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~-----------l~~L~~L~l~~-n~l~~-~~~~~~---------~~l-~ 152 (477)
T 2id5_A 98 GVFTGLSNLTKLDISEN-KIVIL-LDYMFQD-----------LYNLKSLEVGD-NDLVY-ISHRAF---------SGL-N 152 (477)
T ss_dssp TSSTTCTTCCEEECTTS-CCCEE-CTTTTTT-----------CTTCCEEEECC-TTCCE-ECTTSS---------TTC-T
T ss_pred ccccCCCCCCEEECCCC-ccccC-ChhHccc-----------cccCCEEECCC-Cccce-eChhhc---------cCC-C
Confidence 3 33456666666654 23322 0222222 56677777776 45554 222222 334 6
Q ss_pred CccEEEecCCCChhhhh-hhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEE
Q 046441 194 SLKVLDIYGCPKLESIA-ERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRI 272 (465)
Q Consensus 194 ~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 272 (465)
+|+.|++.+|. +..++ ..+..+++|+.|++++|......+..+..+++|++|++++|..+..++.......+|+.|++
T Consensus 153 ~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 153 SLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp TCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred CCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 77778877765 33333 34677778888888776655544556677778888888877777767665555557888888
Q ss_pred ecCCCcCccc-ccccCCCcccceeeccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecC
Q 046441 273 YGCERLEALP-KGLHNLKSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISG 349 (465)
Q Consensus 273 ~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 349 (465)
++|. +..+| ..+..+++|++|++++|. +..++. ...+++|++|++++|. +....+.. +..+++|++|++++
T Consensus 232 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 232 THCN-LTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYA---FRGLNYLRVLNVSG 305 (477)
T ss_dssp ESSC-CCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSC-CSEECTTT---BTTCTTCCEEECCS
T ss_pred cCCc-ccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCc-cceECHHH---hcCcccCCEEECCC
Confidence 8775 44554 356777788888887774 334332 3456778888888776 33332222 56777888888887
Q ss_pred CCCcccccccccccccCCCCCccccceEeccCCCCCc
Q 046441 350 CDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLE 386 (465)
Q Consensus 350 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 386 (465)
| .+..++... +..+++|++|++.+ +.+.
T Consensus 306 N--~l~~~~~~~------~~~l~~L~~L~l~~-N~l~ 333 (477)
T 2id5_A 306 N--QLTTLEESV------FHSVGNLETLILDS-NPLA 333 (477)
T ss_dssp S--CCSCCCGGG------BSCGGGCCEEECCS-SCEE
T ss_pred C--cCceeCHhH------cCCCcccCEEEccC-CCcc
Confidence 6 555555432 22456788888877 3444
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=4.5e-22 Score=203.30 Aligned_cols=305 Identities=16% Similarity=0.175 Sum_probs=190.4
Q ss_pred cCcccEEEccCCccccccccccccCCCCCccEEEecCCcCcceecCc--cCCCCccEEeeccccCcccccccccc-ccCC
Q 046441 70 PSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAGV--QLPRSLKRLHILLCNNIRTLTVEEGI-QCSN 146 (465)
Q Consensus 70 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~-~~~~ 146 (465)
+.+++.+++.++. +..+|.... ..+++|+.|+++++ .+..++.. ..+++|+.|+++++ .++.+ |... ..
T Consensus 50 l~~l~~l~l~~~~-l~~lp~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~~~~-- 121 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKLPAALL-DSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYL--PPHVFQN-- 121 (597)
T ss_dssp GCCCSEEEESSCE-ESEECTHHH-HHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCCC--CTTTTTT--
T ss_pred CCCceEEEeeCCC-CCCcCHHHH-ccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCC-cCCCC--CHHHHcC--
Confidence 4556666666543 555554321 23355666666665 45555432 44556666666664 34444 3322 22
Q ss_pred CCCCchhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccc
Q 046441 147 SSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILC 226 (465)
Q Consensus 147 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 226 (465)
+++|++|++++ +.++. ++...+ +.+ ++|++|++++|......|..++.+++|++|++++
T Consensus 122 ---------l~~L~~L~L~~-n~l~~-l~~~~~---------~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 180 (597)
T 3oja_B 122 ---------VPLLTVLVLER-NDLSS-LPRGIF---------HNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180 (597)
T ss_dssp ---------CTTCCEEECCS-SCCCC-CCTTTT---------TTC-TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT
T ss_pred ---------CCCCCEEEeeC-CCCCC-CCHHHh---------ccC-CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC
Confidence 56677777777 45554 332111 333 6777777777653333344577777888888877
Q ss_pred cccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccC
Q 046441 227 CENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLE 306 (465)
Q Consensus 227 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 306 (465)
|.... + .+..+++|+.|++++| .+..++ ..++|+.|++++|. +..++..+ .++|+.|++++|. +...+
T Consensus 181 N~l~~-~--~~~~l~~L~~L~l~~n-~l~~l~----~~~~L~~L~ls~n~-l~~~~~~~--~~~L~~L~L~~n~-l~~~~ 248 (597)
T 3oja_B 181 NRLTH-V--DLSLIPSLFHANVSYN-LLSTLA----IPIAVEELDASHNS-INVVRGPV--NVELTILKLQHNN-LTDTA 248 (597)
T ss_dssp SCCSB-C--CGGGCTTCSEEECCSS-CCSEEE----CCTTCSEEECCSSC-CCEEECSC--CSCCCEEECCSSC-CCCCG
T ss_pred CCCCC-c--ChhhhhhhhhhhcccC-cccccc----CCchhheeeccCCc-cccccccc--CCCCCEEECCCCC-CCCCh
Confidence 65433 2 2445677888888776 444332 23467888887765 44444322 3578888888874 44444
Q ss_pred CCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCc
Q 046441 307 EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLE 386 (465)
Q Consensus 307 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 386 (465)
..+.+++|++|++++|. +....+.. +..+++|++|++++| .+..++... ..+++|++|++++ +.++
T Consensus 249 ~l~~l~~L~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~Ls~N--~l~~l~~~~-------~~l~~L~~L~Ls~-N~l~ 314 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNE-LEKIMYHP---FVKMQRLERLYISNN--RLVALNLYG-------QPIPTLKVLDLSH-NHLL 314 (597)
T ss_dssp GGGGCTTCSEEECCSSC-CCEEESGG---GTTCSSCCEEECTTS--CCCEEECSS-------SCCTTCCEEECCS-SCCC
T ss_pred hhccCCCCCEEECCCCc-cCCCCHHH---hcCccCCCEEECCCC--CCCCCCccc-------ccCCCCcEEECCC-CCCC
Confidence 45667788888888887 33333322 667888889998887 666665543 2467899999988 5888
Q ss_pred cccccccCCCCcceEEecCCCCCCcCCCCCCcccccEEeecCCch
Q 046441 387 RLSSSIVDLQNLTELYLGDCPKLKYFPEKGLPSSLLRLYIDECPL 431 (465)
Q Consensus 387 ~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~ 431 (465)
.+|..+..+++|++|++++| .+..++.. .+++|++|++++|+-
T Consensus 315 ~i~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 315 HVERNQPQFDRLENLYLDHN-SIVTLKLS-THHTLKNLTLSHNDW 357 (597)
T ss_dssp CCGGGHHHHTTCSEEECCSS-CCCCCCCC-TTCCCSEEECCSSCE
T ss_pred ccCcccccCCCCCEEECCCC-CCCCcChh-hcCCCCEEEeeCCCC
Confidence 88887788889999999984 57776643 358899999988753
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=5.5e-22 Score=192.17 Aligned_cols=299 Identities=14% Similarity=0.138 Sum_probs=157.7
Q ss_pred CCCcEEEecCCCCCCCCCC--CcCcCcccEEEccCCccccccccccccCCCCCccEEEecCCcCcceecCc--cCCCCcc
Q 046441 48 SSLREIEICKCSSLVSFPE--VALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAGV--QLPRSLK 123 (465)
Q Consensus 48 ~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~ 123 (465)
++++.|+++++ .++.+|. +..+++|++|+++++. +..++.... ...++|++|+++++ .+..++.. ..+++|+
T Consensus 45 ~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 45 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAF-AYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp CCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CCceEEEecCC-chhhCChhHhcccccCcEEECCCCc-ccccChhhc-cCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence 44455555444 3344442 2234445555554432 333332111 22344555555544 33333322 2334555
Q ss_pred EEeeccccCcccccccccc-ccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecC
Q 046441 124 RLHILLCNNIRTLTVEEGI-QCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYG 202 (465)
Q Consensus 124 ~L~l~~c~~l~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~ 202 (465)
.|+++++ .++.+ |..+ .. +++|++|++++ +.+.. ++...+ ..+ ++|++|++++
T Consensus 121 ~L~L~~n-~l~~l--~~~~~~~-----------l~~L~~L~L~~-n~l~~-~~~~~~---------~~l-~~L~~L~l~~ 174 (390)
T 3o6n_A 121 VLVLERN-DLSSL--PRGIFHN-----------TPKLTTLSMSN-NNLER-IEDDTF---------QAT-TSLQNLQLSS 174 (390)
T ss_dssp EEECCSS-CCCCC--CTTTTTT-----------CTTCCEEECCS-SCCCB-CCTTTT---------SSC-TTCCEEECCS
T ss_pred EEECCCC-ccCcC--CHHHhcC-----------CCCCcEEECCC-CccCc-cChhhc---------cCC-CCCCEEECCC
Confidence 5555543 34433 4332 11 45566666665 34443 222111 333 5666666666
Q ss_pred CCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCccc
Q 046441 203 CPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALP 282 (465)
Q Consensus 203 ~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 282 (465)
|. +..+ .+..+++|+.|++++|.... +...++|++|++++| .+..++... .++|+.|++++|. +...
T Consensus 175 n~-l~~~--~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n-~l~~~~~~~--~~~L~~L~l~~n~-l~~~- 241 (390)
T 3o6n_A 175 NR-LTHV--DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHN-SINVVRGPV--NVELTILKLQHNN-LTDT- 241 (390)
T ss_dssp SC-CSBC--CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSS-CCCEEECCC--CSSCCEEECCSSC-CCCC-
T ss_pred Cc-CCcc--ccccccccceeecccccccc-----cCCCCcceEEECCCC-eeeeccccc--cccccEEECCCCC-Cccc-
Confidence 54 3332 24556667777776653221 222356777777776 455454432 2467777777765 3333
Q ss_pred ccccCCCcccceeeccCCCCCccCC-CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCccccccccc
Q 046441 283 KGLHNLKSLQELRIGRGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLED 361 (465)
Q Consensus 283 ~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~ 361 (465)
..++.+++|++|++++|......+. ...+++|++|++++|. +...... ...+++|++|++++| .+..++...
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~----~~~l~~L~~L~L~~n--~l~~~~~~~ 314 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY----GQPIPTLKVLDLSHN--HLLHVERNQ 314 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS----SSCCTTCCEEECCSS--CCCCCGGGH
T ss_pred HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc----cCCCCCCCEEECCCC--cceecCccc
Confidence 3566777777777777643222222 3456777777777776 3322221 346778888888886 565665533
Q ss_pred ccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCC
Q 046441 362 KRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDC 406 (465)
Q Consensus 362 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 406 (465)
. .+++|++|++++ +.++.++ +..+++|++|+++++
T Consensus 315 ~-------~l~~L~~L~L~~-N~i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 315 P-------QFDRLENLYLDH-NSIVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp H-------HHTTCSEEECCS-SCCCCCC--CCTTCCCSEEECCSS
T ss_pred c-------ccCcCCEEECCC-CccceeC--chhhccCCEEEcCCC
Confidence 2 456788888888 4677775 567788888888874
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.4e-21 Score=196.80 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=52.9
Q ss_pred cccceeecccCCCCccccc-ccccCCCCcEEEecCCCCCCCCC--CCcCcCcccEEEccCCccccccccccccCCCCCcc
Q 046441 24 CRLEYLRLRYCEGLVKLPQ-SSLSLSSLREIEICKCSSLVSFP--EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLE 100 (465)
Q Consensus 24 ~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 100 (465)
.+++.++++++.. +.+|. .+..+++|++|++++| .+..++ .++.+++|++|++++|. +..++.... ..+++|+
T Consensus 51 ~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~ 126 (597)
T 3oja_B 51 NNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF-QNVPLLT 126 (597)
T ss_dssp CCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCC
T ss_pred CCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHH-cCCCCCC
Confidence 4556666665554 44443 3455666666666665 344443 34446666666666643 444443311 2345666
Q ss_pred EEEecCCcCcceecCc--cCCCCccEEeeccc
Q 046441 101 ILEIWICCSLTYIAGV--QLPRSLKRLHILLC 130 (465)
Q Consensus 101 ~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~c 130 (465)
+|++++| .+..++.. ..+++|+.|+++++
T Consensus 127 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 127 VLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC
Confidence 6666665 44444433 23455555555553
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=2.3e-20 Score=176.42 Aligned_cols=239 Identities=14% Similarity=0.202 Sum_probs=147.4
Q ss_pred cccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCC--CCcCcCcccEEEccCCccccccccccccCCCCCccE
Q 046441 24 CRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEI 101 (465)
Q Consensus 24 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 101 (465)
.+++.++++++.. +.+|..+ .+++++|++++| .++.++ .++.+++|++|+++++. +..+..... ..+++|++
T Consensus 31 c~l~~l~~~~~~l-~~lp~~~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~ 104 (330)
T 1xku_A 31 CHLRVVQCSDLGL-EKVPKDL--PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK-ISKISPGAF-APLVKLER 104 (330)
T ss_dssp EETTEEECTTSCC-CSCCCSC--CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTT-TTCTTCCE
T ss_pred CCCeEEEecCCCc-cccCccC--CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHh-cCCCCCCE
Confidence 3678888887765 6677544 367888888887 566665 35668888888888864 555532211 34578888
Q ss_pred EEecCCcCcceecCccCCCCccEEeeccccCccccccccc-cccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcc
Q 046441 102 LEIWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEEG-IQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELP 180 (465)
Q Consensus 102 L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 180 (465)
|+++++ .++.++... .++|+.|+++++ .++.+ +.. +.. +++|+.|++++ +.+.. .+ ..+
T Consensus 105 L~Ls~n-~l~~l~~~~-~~~L~~L~l~~n-~l~~~--~~~~~~~-----------l~~L~~L~l~~-n~l~~-~~--~~~ 164 (330)
T 1xku_A 105 LYLSKN-QLKELPEKM-PKTLQELRVHEN-EITKV--RKSVFNG-----------LNQMIVVELGT-NPLKS-SG--IEN 164 (330)
T ss_dssp EECCSS-CCSBCCSSC-CTTCCEEECCSS-CCCBB--CHHHHTT-----------CTTCCEEECCS-SCCCG-GG--BCT
T ss_pred EECCCC-cCCccChhh-cccccEEECCCC-ccccc--CHhHhcC-----------CccccEEECCC-CcCCc-cC--cCh
Confidence 888886 566655433 367788877774 34444 322 222 56677777776 34432 10 111
Q ss_pred hhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-
Q 046441 181 ATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE- 259 (465)
Q Consensus 181 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~- 259 (465)
..+ ..+ ++|++|++++|. +..+|..+. ++|++|++++|......+..+..+++|++|++++| .++.++.
T Consensus 165 ~~~-----~~l-~~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 234 (330)
T 1xku_A 165 GAF-----QGM-KKLSYIRIADTN-ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNG 234 (330)
T ss_dssp TGG-----GGC-TTCCEEECCSSC-CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTT
T ss_pred hhc-----cCC-CCcCEEECCCCc-cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChh
Confidence 222 223 567777777754 444554332 67777777776554444566667777777777776 3444433
Q ss_pred CCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccC
Q 046441 260 GGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRG 299 (465)
Q Consensus 260 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 299 (465)
.+..+++|+.|++++|. +..+|..+..+++|++|++++|
T Consensus 235 ~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 235 SLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp TGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS
T ss_pred hccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCC
Confidence 44456677777777764 4566666667777777777766
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=5.7e-20 Score=173.75 Aligned_cols=288 Identities=14% Similarity=0.182 Sum_probs=171.5
Q ss_pred cccEEEccCCccccccccccccCCCCCccEEEecCCcCcceecCc--cCCCCccEEeeccccCccccccccccccCCCCC
Q 046441 72 KLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAGV--QLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSS 149 (465)
Q Consensus 72 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 149 (465)
+++.++++++. ++.+|... .++|+.|+++++ .++.++.. ..+++|+.|+++++ .++.+ .|..+..
T Consensus 32 ~l~~l~~~~~~-l~~lp~~~----~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~----- 98 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPKDL----PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKI-SPGAFAP----- 98 (330)
T ss_dssp ETTEEECTTSC-CCSCCCSC----CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCB-CTTTTTT-----
T ss_pred CCeEEEecCCC-ccccCccC----CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC-cCCee-CHHHhcC-----
Confidence 45555555532 44444331 145566666554 44444432 33456666666654 23322 0223333
Q ss_pred CchhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEecccccc
Q 046441 150 SSRRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCEN 229 (465)
Q Consensus 150 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 229 (465)
+++|++|++++ +.++. ++. . ++++|++|++++|......+..+..+++|++|++++|..
T Consensus 99 ------l~~L~~L~Ls~-n~l~~-l~~------------~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 157 (330)
T 1xku_A 99 ------LVKLERLYLSK-NQLKE-LPE------------K-MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157 (330)
T ss_dssp ------CTTCCEEECCS-SCCSB-CCS------------S-CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred ------CCCCCEEECCC-CcCCc-cCh------------h-hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcC
Confidence 57788888887 55655 443 1 226788999988663333344578899999999998765
Q ss_pred cc--ccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCC
Q 046441 230 LK--ILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE 307 (465)
Q Consensus 230 ~~--~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 307 (465)
.. ..+..+..+++|++|++++| .++.++.... ++|+.|++++|......+..+..+++|++|++++|. +..++.
T Consensus 158 ~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~ 233 (330)
T 1xku_A 158 KSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDN 233 (330)
T ss_dssp CGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECT
T ss_pred CccCcChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeCh
Confidence 42 44667788899999999988 6777776544 589999999986444446678888899999998884 333332
Q ss_pred --CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCC
Q 046441 308 --DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNL 385 (465)
Q Consensus 308 --~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 385 (465)
...+++|++|++++|. +...+.. +..+++|++|++++| .+..++...-.-.......+.++.|++.+ +.+
T Consensus 234 ~~~~~l~~L~~L~L~~N~-l~~lp~~----l~~l~~L~~L~l~~N--~i~~~~~~~f~~~~~~~~~~~l~~l~l~~-N~~ 305 (330)
T 1xku_A 234 GSLANTPHLRELHLNNNK-LVKVPGG----LADHKYIQVVYLHNN--NISAIGSNDFCPPGYNTKKASYSGVSLFS-NPV 305 (330)
T ss_dssp TTGGGSTTCCEEECCSSC-CSSCCTT----TTTCSSCCEEECCSS--CCCCCCTTSSSCSSCCTTSCCCSEEECCS-SSS
T ss_pred hhccCCCCCCEEECCCCc-CccCChh----hccCCCcCEEECCCC--cCCccChhhcCCcccccccccccceEeec-Ccc
Confidence 3456778888888776 3322221 556777888888876 55555442200000011234566666666 344
Q ss_pred cc--c-cccccCCCCcceEEecC
Q 046441 386 ER--L-SSSIVDLQNLTELYLGD 405 (465)
Q Consensus 386 ~~--l-~~~~~~l~~L~~L~l~~ 405 (465)
.. + |..+..++.++.+++++
T Consensus 306 ~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 306 QYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp CGGGSCGGGGTTCCCGGGEEC--
T ss_pred cccccCccccccccceeEEEecc
Confidence 42 2 23555566666666655
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=6.6e-21 Score=179.65 Aligned_cols=232 Identities=23% Similarity=0.340 Sum_probs=160.9
Q ss_pred cccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCC-CCcCcCcccEEEccCCccccccccccccCCCCCcc
Q 046441 22 LSCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP-EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLE 100 (465)
Q Consensus 22 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 100 (465)
.+++++.|+++++.. +.+|..++.+++|++|++++| .+..+| .++.+++|++|++++|. +..+|..+ ..+++|+
T Consensus 79 ~~~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l--~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP-LRALPASI--ASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGG--GGCTTCC
T ss_pred cccceeEEEccCCCc-hhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCc-cccCcHHH--hcCcCCC
Confidence 347888899988876 688887888888999999887 555777 36668888888888864 66666553 3457788
Q ss_pred EEEecCCcCcceecCccCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcc
Q 046441 101 ILEIWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELP 180 (465)
Q Consensus 101 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 180 (465)
+|++++|..+..++. .+....+. ..+.. +++|++|++++ +.++. + |
T Consensus 154 ~L~L~~n~~~~~~p~-----~~~~~~~~-----------~~~~~-----------l~~L~~L~L~~-n~l~~-l-----p 199 (328)
T 4fcg_A 154 ELSIRACPELTELPE-----PLASTDAS-----------GEHQG-----------LVNLQSLRLEW-TGIRS-L-----P 199 (328)
T ss_dssp EEEEEEETTCCCCCS-----CSEEEC-C-----------CCEEE-----------STTCCEEEEEE-ECCCC-C-----C
T ss_pred EEECCCCCCccccCh-----hHhhccch-----------hhhcc-----------CCCCCEEECcC-CCcCc-c-----h
Confidence 888887755544442 11111111 11111 46677777776 34443 2 2
Q ss_pred hhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCC
Q 046441 181 ATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEG 260 (465)
Q Consensus 181 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~ 260 (465)
..+ ..+ ++|++|++++|. +..+|..+..+++|++|++++|...+.+|..+..+++|++|++++|...+.+|..
T Consensus 200 ~~l-----~~l-~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~ 272 (328)
T 4fcg_A 200 ASI-----ANL-QNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272 (328)
T ss_dssp GGG-----GGC-TTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred Hhh-----cCC-CCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh
Confidence 233 333 678888888765 5556667778888888888887777777777778888888888887777777777
Q ss_pred CCCCCCCceEEEecCCCcCcccccccCCCcccceeeccC
Q 046441 261 GLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRG 299 (465)
Q Consensus 261 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 299 (465)
+..+++|+.|++++|...+.+|..++.+++|+.+++..+
T Consensus 273 ~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 777778888888888777788888888888888777654
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=1.4e-19 Score=186.50 Aligned_cols=201 Identities=17% Similarity=0.115 Sum_probs=150.1
Q ss_pred CCccEEEecCCCCh--hhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCce
Q 046441 193 PSLKVLDIYGCPKL--ESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSK 269 (465)
Q Consensus 193 ~~L~~L~l~~~~~l--~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~ 269 (465)
++|+.++++++... ...+..+..+.+|+.+++..+.... .+..+..+++|+.+++.++......+. .+..+++++.
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccc
Confidence 67888888876532 2334456677888888888765443 455677889999999998855554443 4556779999
Q ss_pred EEEecCCCcCcccccccCCCcccceeeccCCCCCcc-CC-CCCCCccceeeecCCcccccccccccccCCCCCCccEEEe
Q 046441 270 LRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSL-EE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAI 347 (465)
Q Consensus 270 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 347 (465)
++++.|......+..+..+++|+.|++++|.....+ +. ...+++|++|++++|. +....+.. +.++++|++|++
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~---f~~l~~L~~L~L 525 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA---FNSLSSLQVLNM 525 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEEC
T ss_pred ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHH---HcCCCCCCEEEC
Confidence 999998765566677788999999999998644433 32 4667899999999997 55554443 788999999999
Q ss_pred cCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-cccCC-CCcceEEecCCC
Q 046441 348 SGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIVDL-QNLTELYLGDCP 407 (465)
Q Consensus 348 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l-~~L~~L~l~~c~ 407 (465)
++| .+..++... +..+++|++|++++ ++++.++. .+.++ ++|++|++++++
T Consensus 526 s~N--~l~~l~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 526 SHN--NFFSLDTFP------YKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTS--CCCBCCCGG------GTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCC--cCCCCChhH------HhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 998 677665432 23567999999999 78888765 66676 689999999854
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.6e-19 Score=170.83 Aligned_cols=222 Identities=14% Similarity=0.147 Sum_probs=122.7
Q ss_pred cccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhh-hhcCCCCCcEEecccccccc--c
Q 046441 156 SSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAE-RLDNNTSLETISILCCENLK--I 232 (465)
Q Consensus 156 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~--~ 232 (465)
+++|++|++++ +.++. ++. .-. ++|++|++++|. +..++. .+..+++|++|++++|.... .
T Consensus 101 l~~L~~L~L~~-n~l~~-l~~------------~~~-~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 164 (332)
T 2ft3_A 101 LRKLQKLYISK-NHLVE-IPP------------NLP-SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164 (332)
T ss_dssp CTTCCEEECCS-SCCCS-CCS------------SCC-TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGS
T ss_pred cCCCCEEECCC-CcCCc-cCc------------ccc-ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCC
Confidence 45677777766 45544 332 111 567777777754 444443 36777888888888765532 3
Q ss_pred cccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCC--CCC
Q 046441 233 LPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE--DGL 310 (465)
Q Consensus 233 l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~ 310 (465)
.+..+..+ +|++|++++| .++.++.... ++|+.|++++|......+..+..+++|++|++++|. +..++. ...
T Consensus 165 ~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~ 239 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSF 239 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGG
T ss_pred CcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhC
Confidence 35555555 7888888877 5666665443 478888888775444344567777788888887773 333332 244
Q ss_pred CCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCc--cc
Q 046441 311 PTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLE--RL 388 (465)
Q Consensus 311 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~l 388 (465)
+++|++|++++|. +...+.. +..+++|++|++++| .+..++...-.-.........|+.|++.+. .+. .+
T Consensus 240 l~~L~~L~L~~N~-l~~lp~~----l~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N-~~~~~~~ 311 (332)
T 2ft3_A 240 LPTLRELHLDNNK-LSRVPAG----LPDLKLLQVVYLHTN--NITKVGVNDFCPVGFGVKRAYYNGISLFNN-PVPYWEV 311 (332)
T ss_dssp CTTCCEEECCSSC-CCBCCTT----GGGCTTCCEEECCSS--CCCBCCTTSSSCSSCCSSSCCBSEEECCSS-SSCGGGS
T ss_pred CCCCCEEECCCCc-CeecChh----hhcCccCCEEECCCC--CCCccChhHccccccccccccccceEeecC-ccccccc
Confidence 5667777777665 2222211 455667777777765 444443321000000001345566666652 333 12
Q ss_pred -cccccCCCCcceEEecCC
Q 046441 389 -SSSIVDLQNLTELYLGDC 406 (465)
Q Consensus 389 -~~~~~~l~~L~~L~l~~c 406 (465)
+..+..+++|+.++++++
T Consensus 312 ~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 312 QPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CGGGGTTBCCSTTEEC---
T ss_pred Ccccccccchhhhhhcccc
Confidence 224555566666665554
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=1e-22 Score=201.90 Aligned_cols=379 Identities=19% Similarity=0.177 Sum_probs=235.2
Q ss_pred ccccceeecccCCCCc-ccccccccCCCCcEEEecCCCCCCC-----CC-CCcCcCcccEEEccCCccccccccccccCC
Q 046441 23 SCRLEYLRLRYCEGLV-KLPQSSLSLSSLREIEICKCSSLVS-----FP-EVALPSKLKKIRISSCDALKSLPEAWMCDT 95 (465)
Q Consensus 23 ~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~~~~l~~-----~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 95 (465)
+++|++|+++++.... .+...+..+++|++|++++|. +.. ++ .+..+++|++|+++++. +.+.........
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHH
Confidence 4678889998877522 223336678889999998883 442 22 23446889999998865 544322212122
Q ss_pred CC----CccEEEecCCcCccee-----cCc-cCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeecc
Q 046441 96 NS----SLEILEIWICCSLTYI-----AGV-QLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIG 165 (465)
Q Consensus 96 ~~----~L~~L~l~~~~~l~~~-----~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 165 (465)
.+ +|++|++++| .++.. +.. ..+++|+.|+++++. ++... +..+..... ...++|++|+++
T Consensus 80 l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~-~~~l~~~l~------~~~~~L~~L~L~ 150 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAG-LQLLCEGLL------DPQCRLEKLQLE 150 (461)
T ss_dssp TCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHH-HHHHHHHHT------STTCCCCEEECT
T ss_pred HhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHH-HHHHHHHHh------cCCCcceEEECC
Confidence 23 6999999887 45532 211 456789999988864 43220 111110000 003569999999
Q ss_pred CCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhc-----CCCCCcEEeccccccccc----cccc
Q 046441 166 NCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLD-----NNTSLETISILCCENLKI----LPSG 236 (465)
Q Consensus 166 ~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~-----~l~~L~~L~l~~~~~~~~----l~~~ 236 (465)
+| .++. .....++..+.. + ++|++|++++|...+..+..+. ..++|++|++++|..... ++..
T Consensus 151 ~n-~l~~-~~~~~l~~~l~~-----~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 151 YC-SLSA-ASCEPLASVLRA-----K-PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp TS-CCBG-GGHHHHHHHHHH-----C-TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred CC-CCCH-HHHHHHHHHHhh-----C-CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 85 5554 222233444433 2 6899999999773332222222 367999999999865542 4666
Q ss_pred cccCccccEEecccCcccccC------CCCCCCCCCCceEEEecCCCcCc-----ccccccCCCcccceeeccCCCCCcc
Q 046441 237 LHNLRQLQEISIEKCGNLESF------PEGGLPCAKLSKLRIYGCERLEA-----LPKGLHNLKSLQELRIGRGVELPSL 305 (465)
Q Consensus 237 ~~~~~~L~~L~l~~~~~l~~l------~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~ 305 (465)
+..+++|++|++++| .++.. +.....+++|++|++++|. ++. ++..+..+++|++|++++|. +...
T Consensus 223 l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~ 299 (461)
T 1z7x_W 223 VASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNE-LGDE 299 (461)
T ss_dssp HHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHH
T ss_pred HHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCC-CchH
Confidence 777899999999998 44432 1122346799999999985 444 56667778999999999984 3221
Q ss_pred -----CC--CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCC-CCccccceE
Q 046441 306 -----EE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTAL-PLPACLASL 377 (465)
Q Consensus 306 -----~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~-~~~~~L~~L 377 (465)
.. ....++|++|++++|.........++..+..+++|++|++++| .+....... +...+ ...++|++|
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~--l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN--RLEDAGVRE--LCQGLGQPGSVLRVL 375 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS--BCHHHHHHH--HHHHHTSTTCCCCEE
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC--ccccccHHH--HHHHHcCCCCceEEE
Confidence 11 1233699999999998443322222222556799999999997 443321110 00000 124699999
Q ss_pred eccCCCCCc-----cccccccCCCCcceEEecCCCCCCcCCCC-------CCcccccEEeecCC
Q 046441 378 MIGNFPNLE-----RLSSSIVDLQNLTELYLGDCPKLKYFPEK-------GLPSSLLRLYIDEC 429 (465)
Q Consensus 378 ~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-------~~~~~L~~L~l~~c 429 (465)
++++| +++ .++..+..+++|++|++++| .+...... ....+|+.|.+.++
T Consensus 376 ~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 376 WLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp ECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred ECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 99995 777 56777788999999999995 56552110 11246777777665
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=8.6e-20 Score=172.65 Aligned_cols=266 Identities=18% Similarity=0.196 Sum_probs=161.1
Q ss_pred ccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccc
Q 046441 157 SLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSG 236 (465)
Q Consensus 157 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~ 236 (465)
++++.|++++ +.++. ++...+ ..+ ++|++|++++|......|..++.+++|++|++++|.. ..+|..
T Consensus 54 ~~l~~L~l~~-n~i~~-~~~~~~---------~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~ 120 (332)
T 2ft3_A 54 PDTTLLDLQN-NDISE-LRKDDF---------KGL-QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPPN 120 (332)
T ss_dssp TTCCEEECCS-SCCCE-ECTTTT---------TTC-TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-CSCCSS
T ss_pred CCCeEEECCC-CcCCc-cCHhHh---------hCC-CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-CccCcc
Confidence 3466666666 34444 222111 333 5677777777553233355677777777777777543 345554
Q ss_pred cccCccccEEecccCcccccCCC-CCCCCCCCceEEEecCCCc--CcccccccCCCcccceeeccCCCCCccCCCCCCCc
Q 046441 237 LHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYGCERL--EALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTN 313 (465)
Q Consensus 237 ~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 313 (465)
+. ++|++|++++| .++.++. .+..+++|+.|++++|... ...+..+..+ +|++|++++|. +..++. ..+++
T Consensus 121 ~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~-~~~~~ 194 (332)
T 2ft3_A 121 LP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPK-DLPET 194 (332)
T ss_dssp CC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCS-SSCSS
T ss_pred cc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCc-cccCC
Confidence 43 67777777777 4555554 3455677788887776532 1334455555 78888887773 444443 23367
Q ss_pred cceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCcccccccc
Q 046441 314 LHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIV 393 (465)
Q Consensus 314 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 393 (465)
|++|++++|. +....... +..+++|++|++++| .+..++... +..+++|++|++++ ++++.+|..+.
T Consensus 195 L~~L~l~~n~-i~~~~~~~---l~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~lp~~l~ 261 (332)
T 2ft3_A 195 LNELHLDHNK-IQAIELED---LLRYSKLYRLGLGHN--QIRMIENGS------LSFLPTLRELHLDN-NKLSRVPAGLP 261 (332)
T ss_dssp CSCCBCCSSC-CCCCCTTS---STTCTTCSCCBCCSS--CCCCCCTTG------GGGCTTCCEEECCS-SCCCBCCTTGG
T ss_pred CCEEECCCCc-CCccCHHH---hcCCCCCCEEECCCC--cCCcCChhH------hhCCCCCCEEECCC-CcCeecChhhh
Confidence 8888888876 33333222 567788888888886 555544321 12456888888888 57888887777
Q ss_pred CCCCcceEEecCCCCCCcCCCCCC--------cccccEEeecCCchHHHHHhhcCCCcccccCCcceEeecCc
Q 046441 394 DLQNLTELYLGDCPKLKYFPEKGL--------PSSLLRLYIDECPLIAEKCRKDGGQYWDLLTHIPSVLIDLA 458 (465)
Q Consensus 394 ~l~~L~~L~l~~c~~l~~l~~~~~--------~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (465)
.+++|++|++++ +.++.++...+ .++|+.|++.+++..... .....+..+.++..+.+.+.
T Consensus 262 ~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~---~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 262 DLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE---VQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG---SCGGGGTTBCCSTTEEC---
T ss_pred cCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCcccccc---cCcccccccchhhhhhcccc
Confidence 888888888888 56777765332 356788888887642111 12234555666666655543
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1.1e-20 Score=177.08 Aligned_cols=250 Identities=16% Similarity=0.129 Sum_probs=157.9
Q ss_pred CCCcEEEecCCCCCC--CCC-CCcCcCcccEEEccCCcccc-ccccccccCCCCCccEEEecCCcCcc-eecCc-cCCCC
Q 046441 48 SSLREIEICKCSSLV--SFP-EVALPSKLKKIRISSCDALK-SLPEAWMCDTNSSLEILEIWICCSLT-YIAGV-QLPRS 121 (465)
Q Consensus 48 ~~L~~L~l~~~~~l~--~~~-~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~-~~~~~ 121 (465)
.++++|+++++.--. .+| .++.+++|++|+++++..+. .+|..+ ..+++|++|+++++ .+. .++.. ..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l--~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHT-NVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG--GGCTTCSEEEEEEE-CCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH--hcCCCCCEEECcCC-eeCCcCCHHHhCCCC
Confidence 345566665552211 233 34445566666665322222 333332 23355666666655 333 23322 33456
Q ss_pred ccEEeeccccCcc-ccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEe
Q 046441 122 LKRLHILLCNNIR-TLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDI 200 (465)
Q Consensus 122 L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l 200 (465)
|+.|+++++. ++ .+ |..+.. +++|++|++++ +.++..+ |..+ ..++++|+.|++
T Consensus 127 L~~L~Ls~N~-l~~~~--p~~~~~-----------l~~L~~L~L~~-N~l~~~~-----p~~l-----~~l~~~L~~L~L 181 (313)
T 1ogq_A 127 LVTLDFSYNA-LSGTL--PPSISS-----------LPNLVGITFDG-NRISGAI-----PDSY-----GSFSKLFTSMTI 181 (313)
T ss_dssp CCEEECCSSE-EESCC--CGGGGG-----------CTTCCEEECCS-SCCEEEC-----CGGG-----GCCCTTCCEEEC
T ss_pred CCEEeCCCCc-cCCcC--ChHHhc-----------CCCCCeEECcC-CcccCcC-----CHHH-----hhhhhcCcEEEC
Confidence 6666666542 32 33 444444 67788888887 4554212 2222 444347888888
Q ss_pred cCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCc
Q 046441 201 YGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEA 280 (465)
Q Consensus 201 ~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~ 280 (465)
++|.....+|..+..++ |++|++++|......|..+..+++|++|++++|. +...+.....+++|++|++++|.....
T Consensus 182 ~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 259 (313)
T 1ogq_A 182 SRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGT 259 (313)
T ss_dssp CSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEEC
T ss_pred cCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcccCc
Confidence 88764456777777776 9999998887766677778888899999999884 443333355567899999998876657
Q ss_pred ccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCccccc
Q 046441 281 LPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWK 327 (465)
Q Consensus 281 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 327 (465)
+|..+..+++|++|++++|.....+|..+.+++|+.+++.+|..+.+
T Consensus 260 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred CChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 78888888999999999886555666667778888888888875553
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=2.3e-20 Score=175.90 Aligned_cols=217 Identities=23% Similarity=0.323 Sum_probs=101.1
Q ss_pred CccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEe
Q 046441 194 SLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIY 273 (465)
Q Consensus 194 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 273 (465)
+++.|+++++. +..+|..+..+++|++|++++|... .+|..+..+++|++|++++| .++.+|..+..+++|+.|+++
T Consensus 82 ~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence 44444444432 3344444444444444444443332 34444444444444444444 333444434444444444444
Q ss_pred cCCCcCccccccc---------CCCcccceeeccCCCCCccCC-CCCCCccceeeecCCcccccccccccccCCCCCCcc
Q 046441 274 GCERLEALPKGLH---------NLKSLQELRIGRGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR 343 (465)
Q Consensus 274 ~~~~~~~~~~~~~---------~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~ 343 (465)
+|.....+|..+. .+++|++|++++|. +..++. .+.+++|++|++++|. +...... +..+++|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~----l~~l~~L~ 232 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSP-LSALGPA----IHHLPKLE 232 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSC-CCCCCGG----GGGCTTCC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCC-CCcCchh----hccCCCCC
Confidence 4444444443332 24555555555542 223322 2334455555555554 2222211 34555666
Q ss_pred EEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCCCC-Cccccc
Q 046441 344 CLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPEKG-LPSSLL 422 (465)
Q Consensus 344 ~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~~~L~ 422 (465)
+|++++| .....+|... ..+++|++|++++|+.+..+|..+.++++|++|++++|+.+..+|... .+++|+
T Consensus 233 ~L~Ls~n-~~~~~~p~~~-------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 233 ELDLRGC-TALRNYPPIF-------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp EEECTTC-TTCCBCCCCT-------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred EEECcCC-cchhhhHHHh-------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 6666654 2223333222 244556666666655555555555666666666666666665555521 245555
Q ss_pred EEeec
Q 046441 423 RLYID 427 (465)
Q Consensus 423 ~L~l~ 427 (465)
.+++.
T Consensus 305 ~l~l~ 309 (328)
T 4fcg_A 305 IILVP 309 (328)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 55544
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=8.4e-21 Score=177.87 Aligned_cols=250 Identities=16% Similarity=0.139 Sum_probs=190.5
Q ss_pred ccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecC-CCChhhhhhhhcCCCCCcEEecccccccccccc
Q 046441 157 SLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYG-CPKLESIAERLDNNTSLETISILCCENLKILPS 235 (465)
Q Consensus 157 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~-~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~ 235 (465)
.++++|++++ +.+... ..+|..+ ..+ ++|++|++++ +...+.+|..++.+++|++|++++|...+.+|.
T Consensus 50 ~~l~~L~L~~-~~l~~~---~~~~~~l-----~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSG-LNLPKP---YPIPSSL-----ANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEEC-CCCSSC---EECCGGG-----GGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCC-CCccCC---cccChhH-----hCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH
Confidence 3577888887 444320 0234444 334 7899999995 554567888899999999999999887777888
Q ss_pred ccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCC-cccceeeccCCCCCccCC-CCCCCc
Q 046441 236 GLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLK-SLQELRIGRGVELPSLEE-DGLPTN 313 (465)
Q Consensus 236 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~-~~~~~~ 313 (465)
.+.++++|++|++++|.....+|..+..+++|++|++++|.....+|..++.++ +|++|++++|......+. .+.++
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence 899999999999999844446777777788999999999876557888888888 999999999854334433 23344
Q ss_pred cceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCc-cccccc
Q 046441 314 LHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLE-RLSSSI 392 (465)
Q Consensus 314 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~ 392 (465)
|++|++++|.. ....+.. +..+++|++|++++| .+....... ..+++|++|++++ ++++ .+|..+
T Consensus 199 L~~L~Ls~N~l-~~~~~~~---~~~l~~L~~L~L~~N--~l~~~~~~~-------~~l~~L~~L~Ls~-N~l~~~~p~~l 264 (313)
T 1ogq_A 199 LAFVDLSRNML-EGDASVL---FGSDKNTQKIHLAKN--SLAFDLGKV-------GLSKNLNGLDLRN-NRIYGTLPQGL 264 (313)
T ss_dssp CSEEECCSSEE-EECCGGG---CCTTSCCSEEECCSS--EECCBGGGC-------CCCTTCCEEECCS-SCCEECCCGGG
T ss_pred ccEEECcCCcc-cCcCCHH---HhcCCCCCEEECCCC--ceeeecCcc-------cccCCCCEEECcC-CcccCcCChHH
Confidence 99999999984 3333333 678999999999997 444322222 3567999999999 5777 678789
Q ss_pred cCCCCcceEEecCCCCCC-cCCCCCCcccccEEeecCCchH
Q 046441 393 VDLQNLTELYLGDCPKLK-YFPEKGLPSSLLRLYIDECPLI 432 (465)
Q Consensus 393 ~~l~~L~~L~l~~c~~l~-~l~~~~~~~~L~~L~l~~c~~l 432 (465)
..+++|++|++++| .++ .+|...-+++|+++++.+++.+
T Consensus 265 ~~l~~L~~L~Ls~N-~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 265 TQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp GGCTTCCEEECCSS-EEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred hcCcCCCEEECcCC-cccccCCCCccccccChHHhcCCCCc
Confidence 99999999999995 555 6787666799999999998765
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=2.4e-21 Score=198.22 Aligned_cols=137 Identities=18% Similarity=0.218 Sum_probs=83.2
Q ss_pred HHHhhhhhcccccceeecccCCCCccccccccc-CCC-CcEEEecCCCCCCC--CCC-CcCcCcccEEEccCCccccccc
Q 046441 14 DQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLS-LSS-LREIEICKCSSLVS--FPE-VALPSKLKKIRISSCDALKSLP 88 (465)
Q Consensus 14 ~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~-l~~-L~~L~l~~~~~l~~--~~~-~~~l~~L~~L~l~~~~~l~~~~ 88 (465)
.++..+...+++|++|++++|..-...+..+.. ++. |++|++++|..+.. ++. ...+++|++|++++|. +.+.+
T Consensus 102 ~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~ 180 (592)
T 3ogk_B 102 PWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKD 180 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCC
T ss_pred HHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcc
Confidence 345555556799999999988652233344443 455 99999998864321 111 1247899999999985 44333
Q ss_pred ccc---ccCCCCCccEEEecCCcCcceec-----Cc-cCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccC
Q 046441 89 EAW---MCDTNSSLEILEIWICCSLTYIA-----GV-QLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLL 159 (465)
Q Consensus 89 ~~~---~~~~~~~L~~L~l~~~~~l~~~~-----~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 159 (465)
..+ ....+++|++|+++++ .+..+. .. ..+++|+.|++.+|. +..+ +..+.. +++|
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l--~~~~~~-----------~~~L 245 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFE-ILEL--VGFFKA-----------AANL 245 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGG--HHHHHH-----------CTTC
T ss_pred hhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHH--HHHHhh-----------hhHH
Confidence 221 1134588999999876 343111 11 345789999988863 3334 433333 5667
Q ss_pred CeeeccC
Q 046441 160 EHLEIGN 166 (465)
Q Consensus 160 ~~L~l~~ 166 (465)
++|.+++
T Consensus 246 ~~L~l~~ 252 (592)
T 3ogk_B 246 EEFCGGS 252 (592)
T ss_dssp CEEEECB
T ss_pred Hhhcccc
Confidence 7777764
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=2.8e-18 Score=174.11 Aligned_cols=255 Identities=25% Similarity=0.308 Sum_probs=183.6
Q ss_pred cccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEEE
Q 046441 24 CRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILE 103 (465)
Q Consensus 24 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 103 (465)
.+++.|+++++.. +.+|..+. ++|++|++++| .++.+|. .+++|++|++++|. +..++. ..++|++|+
T Consensus 40 ~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCC-SCCCSCCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCCc-CccChhhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEE
Confidence 4699999999887 78887654 89999999998 6788886 58999999999975 777776 348899999
Q ss_pred ecCCcCcceecCccCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcchhh
Q 046441 104 IWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPATL 183 (465)
Q Consensus 104 l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 183 (465)
++++ .++.++. .+++|+.|+++++ +++.+ |.. +++|++|++++ +.++. ++
T Consensus 108 Ls~N-~l~~l~~--~l~~L~~L~L~~N-~l~~l--p~~--------------l~~L~~L~Ls~-N~l~~-l~-------- 157 (622)
T 3g06_A 108 IFSN-PLTHLPA--LPSGLCKLWIFGN-QLTSL--PVL--------------PPGLQELSVSD-NQLAS-LP-------- 157 (622)
T ss_dssp ECSC-CCCCCCC--CCTTCCEEECCSS-CCSCC--CCC--------------CTTCCEEECCS-SCCSC-CC--------
T ss_pred CcCC-cCCCCCC--CCCCcCEEECCCC-CCCcC--CCC--------------CCCCCEEECcC-CcCCC-cC--------
Confidence 9997 6777765 6678999999885 56666 542 36688999888 45554 22
Q ss_pred hhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCC
Q 046441 184 ESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLP 263 (465)
Q Consensus 184 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 263 (465)
..+++|+.|++.+|. +..+| ..+++|+.|++++|... .+|.. .++|+.|++++| .++.++..
T Consensus 158 ------~~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N-~l~~l~~~--- 219 (622)
T 3g06_A 158 ------ALPSELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNN-RLTSLPAL--- 219 (622)
T ss_dssp ------CCCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSS-CCSSCCCC---
T ss_pred ------CccCCCCEEECCCCC-CCCCc---ccCCCCcEEECCCCCCC-CCCCc---cchhhEEECcCC-cccccCCC---
Confidence 123678888888854 55555 45678888888886543 34442 367888888887 56666643
Q ss_pred CCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCcc
Q 046441 264 CAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR 343 (465)
Q Consensus 264 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~ 343 (465)
+++|+.|++++|. +..+| ..+++|++|++++| .+..++. .+++|++|++++|. +...+.. +..+++|+
T Consensus 220 ~~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N~-L~~lp~~----l~~l~~L~ 287 (622)
T 3g06_A 220 PSGLKELIVSGNR-LTSLP---VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQ-LTRLPES----LIHLSSET 287 (622)
T ss_dssp CTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CCSCCGG----GGGSCTTC
T ss_pred CCCCCEEEccCCc-cCcCC---CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCCC-CCcCCHH----HhhccccC
Confidence 3578888888874 55565 44577888888887 4555554 56778888888776 3333222 55677777
Q ss_pred EEEecCC
Q 046441 344 CLAISGC 350 (465)
Q Consensus 344 ~L~l~~~ 350 (465)
.|++++|
T Consensus 288 ~L~L~~N 294 (622)
T 3g06_A 288 TVNLEGN 294 (622)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 8887776
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=1.6e-18 Score=170.54 Aligned_cols=223 Identities=16% Similarity=0.191 Sum_probs=136.6
Q ss_pred ccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccc
Q 046441 157 SLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSG 236 (465)
Q Consensus 157 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~ 236 (465)
++++.|++++ +.++. ++...+ ..+ ++|++|++++|......+..|..+++|++|++++|......+..
T Consensus 64 ~~l~~L~L~~-n~i~~-~~~~~~---------~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (440)
T 3zyj_A 64 TNTRLLNLHE-NQIQI-IKVNSF---------KHL-RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131 (440)
T ss_dssp TTCSEEECCS-CCCCE-ECTTTT---------SSC-SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred CCCcEEEccC-CcCCe-eCHHHh---------hCC-CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhH
Confidence 3466666666 45554 332222 333 56777777775422222345667777777777776443322335
Q ss_pred cccCccccEEecccCcccccCCC-CCCCCCCCceEEEecCCCcCcccc-cccCCCcccceeeccCCCCCccCCCCCCCcc
Q 046441 237 LHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYGCERLEALPK-GLHNLKSLQELRIGRGVELPSLEEDGLPTNL 314 (465)
Q Consensus 237 ~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 314 (465)
+..+++|++|++++| .++.++. .+..+++|+.|++++|..+..++. .+..+++|++|++++| .+..++....+++|
T Consensus 132 ~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L 209 (440)
T 3zyj_A 132 FVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKL 209 (440)
T ss_dssp SCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSC
T ss_pred hhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCccc
Confidence 666777777777776 4555544 455566777777777666665543 4667777777777776 45566666666777
Q ss_pred ceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-ccc
Q 046441 315 HSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIV 393 (465)
Q Consensus 315 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~ 393 (465)
++|++++|. +....+.. +..+++|++|++++| .+..++... +..+++|++|++++ ++++.++. .+.
T Consensus 210 ~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~L~~n--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~ 276 (440)
T 3zyj_A 210 DELDLSGNH-LSAIRPGS---FQGLMHLQKLWMIQS--QIQVIERNA------FDNLQSLVEINLAH-NNLTLLPHDLFT 276 (440)
T ss_dssp CEEECTTSC-CCEECTTT---TTTCTTCCEEECTTC--CCCEECTTS------STTCTTCCEEECTT-SCCCCCCTTTTS
T ss_pred CEEECCCCc-cCccChhh---hccCccCCEEECCCC--ceeEEChhh------hcCCCCCCEEECCC-CCCCccChhHhc
Confidence 777777775 33333322 566777777777776 455443321 23456777777777 57776665 456
Q ss_pred CCCCcceEEecCC
Q 046441 394 DLQNLTELYLGDC 406 (465)
Q Consensus 394 ~l~~L~~L~l~~c 406 (465)
.+++|+.|+++++
T Consensus 277 ~l~~L~~L~L~~N 289 (440)
T 3zyj_A 277 PLHHLERIHLHHN 289 (440)
T ss_dssp SCTTCCEEECCSS
T ss_pred cccCCCEEEcCCC
Confidence 6777777777764
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=5.4e-20 Score=172.77 Aligned_cols=250 Identities=12% Similarity=0.083 Sum_probs=163.7
Q ss_pred HHHHHhhhhhcccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCcccccccccc
Q 046441 12 EKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAW 91 (465)
Q Consensus 12 ~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 91 (465)
+.+.+..+...+++|++|++++|......|..++.+++|++|++++| .+..+++++.+++|++|++++|. +..++..
T Consensus 22 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~- 98 (317)
T 3o53_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNY-VQELLVG- 98 (317)
T ss_dssp HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEEETTCTTCCEEECCSSE-EEEEEEC-
T ss_pred hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchhhhhcCCCCEEECcCCc-cccccCC-
Confidence 33444445555678999999998873344567888999999999988 55555567778999999998865 6665533
Q ss_pred ccCCCCCccEEEecCCcCcceecCccCCCCccEEeeccccCcccccccc-ccccCCCCCCchhhhcccCCeeeccCCCCc
Q 046441 92 MCDTNSSLEILEIWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEE-GIQCSNSSSSSRRYISSLLEHLEIGNCRSL 170 (465)
Q Consensus 92 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 170 (465)
++|+.|+++++ .+..++... +++|+.|+++++ .++.+ +. .+.. +++|++|++++ +.+
T Consensus 99 -----~~L~~L~l~~n-~l~~~~~~~-~~~L~~L~l~~N-~l~~~--~~~~~~~-----------l~~L~~L~Ls~-N~l 156 (317)
T 3o53_A 99 -----PSIETLHAANN-NISRVSCSR-GQGKKNIYLANN-KITML--RDLDEGC-----------RSRVQYLDLKL-NEI 156 (317)
T ss_dssp -----TTCCEEECCSS-CCSEEEECC-CSSCEEEECCSS-CCCSG--GGBCTGG-----------GSSEEEEECTT-SCC
T ss_pred -----CCcCEEECCCC-ccCCcCccc-cCCCCEEECCCC-CCCCc--cchhhhc-----------cCCCCEEECCC-CCC
Confidence 77999999887 566655433 567888888775 44444 32 2222 56777888877 455
Q ss_pred cccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEeccc
Q 046441 171 TCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEK 250 (465)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 250 (465)
.. .+...+. ..+ ++|++|++++|. +..++. ...+++|++|++++|... .++..+..+++|++|++++
T Consensus 157 ~~-~~~~~~~--------~~l-~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 157 DT-VNFAELA--------ASS-DTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223 (317)
T ss_dssp CE-EEGGGGG--------GGT-TTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTT
T ss_pred Cc-ccHHHHh--------hcc-CcCCEEECCCCc-Cccccc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcC
Confidence 54 2221110 122 667777777755 444432 334777777777775443 3555566777777777777
Q ss_pred CcccccCCCCCCCCCCCceEEEecCCCc-CcccccccCCCcccceeeccCC
Q 046441 251 CGNLESFPEGGLPCAKLSKLRIYGCERL-EALPKGLHNLKSLQELRIGRGV 300 (465)
Q Consensus 251 ~~~l~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~ 300 (465)
| .++.++..+..+++|+.|++++|... ..++..+..+++|+.++++++.
T Consensus 224 N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 224 N-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp S-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred C-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 7 56666666666677777777777644 3455566667777777766543
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=2.1e-18 Score=170.26 Aligned_cols=223 Identities=21% Similarity=0.224 Sum_probs=134.6
Q ss_pred ccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccc
Q 046441 157 SLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSG 236 (465)
Q Consensus 157 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~ 236 (465)
++++.|++++ +.++. ++...+ ..+ ++|++|++++|..-...+..+..+++|++|++++|......+..
T Consensus 75 ~~l~~L~L~~-n~i~~-~~~~~~---------~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 142 (452)
T 3zyi_A 75 SNTRYLNLME-NNIQM-IQADTF---------RHL-HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA 142 (452)
T ss_dssp TTCSEEECCS-SCCCE-ECTTTT---------TTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTT
T ss_pred CCccEEECcC-CcCce-ECHHHc---------CCC-CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhh
Confidence 3466666666 45554 322222 333 56777777765422222345667777777777776544333344
Q ss_pred cccCccccEEecccCcccccCCC-CCCCCCCCceEEEecCCCcCcccc-cccCCCcccceeeccCCCCCccCCCCCCCcc
Q 046441 237 LHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYGCERLEALPK-GLHNLKSLQELRIGRGVELPSLEEDGLPTNL 314 (465)
Q Consensus 237 ~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 314 (465)
+..+++|++|++++| .++.++. .+..+++|+.|++++|..+..++. .+..+++|++|++++| .+..++....+++|
T Consensus 143 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L 220 (452)
T 3zyi_A 143 FEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGL 220 (452)
T ss_dssp SSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTC
T ss_pred hcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccc
Confidence 666777777777776 4555544 445566777777777666666653 4566777777777776 44555656666777
Q ss_pred ceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-ccc
Q 046441 315 HSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIV 393 (465)
Q Consensus 315 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~ 393 (465)
++|++++|. +....+.. +..+++|++|++++| .+..++... +..+++|++|++++ ++++.++. .+.
T Consensus 221 ~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~L~~n--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~ 287 (452)
T 3zyi_A 221 EELEMSGNH-FPEIRPGS---FHGLSSLKKLWVMNS--QVSLIERNA------FDGLASLVELNLAH-NNLSSLPHDLFT 287 (452)
T ss_dssp CEEECTTSC-CSEECGGG---GTTCTTCCEEECTTS--CCCEECTTT------TTTCTTCCEEECCS-SCCSCCCTTSST
T ss_pred cEEECcCCc-CcccCccc---ccCccCCCEEEeCCC--cCceECHHH------hcCCCCCCEEECCC-CcCCccChHHhc
Confidence 777777776 33333222 566777777777776 444443321 23456777777777 46776665 455
Q ss_pred CCCCcceEEecCC
Q 046441 394 DLQNLTELYLGDC 406 (465)
Q Consensus 394 ~l~~L~~L~l~~c 406 (465)
.+++|++|+++++
T Consensus 288 ~l~~L~~L~L~~N 300 (452)
T 3zyi_A 288 PLRYLVELHLHHN 300 (452)
T ss_dssp TCTTCCEEECCSS
T ss_pred cccCCCEEEccCC
Confidence 6777777777764
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=6.4e-19 Score=168.16 Aligned_cols=224 Identities=17% Similarity=0.186 Sum_probs=126.1
Q ss_pred CCccEEEecCCCChhhh-hhhhcCCCCCcEEecccccccccccc-ccccCccccEEecccCcccccCCC--CCCCCCCCc
Q 046441 193 PSLKVLDIYGCPKLESI-AERLDNNTSLETISILCCENLKILPS-GLHNLRQLQEISIEKCGNLESFPE--GGLPCAKLS 268 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~ 268 (465)
++|++|++++|. +..+ +..+..+++|++|++++|.... ++. .+.++++|++|++++| .++.++. .+..+++|+
T Consensus 76 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 76 VNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCC
T ss_pred CCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCc
Confidence 556666666653 3333 3346666666666666654333 333 2556666666666666 4455554 344566677
Q ss_pred eEEEecCCCcCcc-cccccCCCcccceeeccCCCCCccCC-CCCCCccceeeecCCcccccccccccccCCCCCCccEEE
Q 046441 269 KLRIYGCERLEAL-PKGLHNLKSLQELRIGRGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLA 346 (465)
Q Consensus 269 ~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 346 (465)
.|++++|..+..+ +..++.+++|++|++++|......+. .+.+++|++|++++|.. ....... +..+++|++|+
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~---~~~~~~L~~L~ 228 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIF---VDVTSSVECLE 228 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHH---HHHTTTEEEEE
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhh---hhhcccccEEE
Confidence 7777666444444 34556666777777766642222222 34556677777776662 2222221 33467777777
Q ss_pred ecCCCCcccccccccccccCCCCCccccceEeccCCCCCc-----cccccccCCCCcceEEecCCCCCCcCCCCC--Ccc
Q 046441 347 ISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLE-----RLSSSIVDLQNLTELYLGDCPKLKYFPEKG--LPS 419 (465)
Q Consensus 347 l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~ 419 (465)
+++| .+..++...-. .....+.++.+++.++ .+. .+|..+..+++|++|++++ +.++.+|... .++
T Consensus 229 L~~n--~l~~~~~~~l~---~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~ 301 (353)
T 2z80_A 229 LRDT--DLDTFHFSELS---TGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSR-NQLKSVPDGIFDRLT 301 (353)
T ss_dssp EESC--BCTTCCCC---------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCS-SCCCCCCTTTTTTCT
T ss_pred CCCC--ccccccccccc---cccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCC-CCCCccCHHHHhcCC
Confidence 7776 44443321100 0012345566666553 333 3565677888888888888 4677777743 367
Q ss_pred cccEEeecCCc
Q 046441 420 SLLRLYIDECP 430 (465)
Q Consensus 420 ~L~~L~l~~c~ 430 (465)
+|++|++++|+
T Consensus 302 ~L~~L~L~~N~ 312 (353)
T 2z80_A 302 SLQKIWLHTNP 312 (353)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeeCCC
Confidence 88888888764
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=2.4e-18 Score=169.20 Aligned_cols=222 Identities=17% Similarity=0.226 Sum_probs=178.0
Q ss_pred CCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCce
Q 046441 191 LPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSK 269 (465)
Q Consensus 191 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~ 269 (465)
++++++.|++++|..-...+..+..+++|++|++++|......+..+.++++|++|++++| .++.++. .+..+++|+.
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCE
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCce
Confidence 3478999999997633333467899999999999998766555677889999999999998 6777776 5667889999
Q ss_pred EEEecCCCcCccc-ccccCCCcccceeeccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCCCCccEEE
Q 046441 270 LRIYGCERLEALP-KGLHNLKSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLA 346 (465)
Q Consensus 270 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 346 (465)
|++++|. +..++ ..+..+++|++|++++|..+..++. ...+++|++|++++|. +.... . +..+++|++|+
T Consensus 141 L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~----~~~l~~L~~L~ 213 (440)
T 3zyj_A 141 LWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP-N----LTPLIKLDELD 213 (440)
T ss_dssp EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCC-C----CTTCSSCCEEE
T ss_pred eeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Ccccc-c----cCCCcccCEEE
Confidence 9999987 44444 4788999999999999877777665 3568899999999997 44332 1 67889999999
Q ss_pred ecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-cccCCCCcceEEecCCCCCCcCCCCCC--cccccE
Q 046441 347 ISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGDCPKLKYFPEKGL--PSSLLR 423 (465)
Q Consensus 347 l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~ 423 (465)
+++| .+..++... +..+++|++|++.+ ++++.++. .+..+++|++|++++ +.++.++...+ +++|++
T Consensus 214 Ls~N--~l~~~~~~~------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 214 LSGN--HLSAIRPGS------FQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp CTTS--CCCEECTTT------TTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCE
T ss_pred CCCC--ccCccChhh------hccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCE
Confidence 9998 666654322 34678999999999 68888865 788999999999999 58888887543 689999
Q ss_pred EeecCCc
Q 046441 424 LYIDECP 430 (465)
Q Consensus 424 L~l~~c~ 430 (465)
|++.++|
T Consensus 284 L~L~~Np 290 (440)
T 3zyj_A 284 IHLHHNP 290 (440)
T ss_dssp EECCSSC
T ss_pred EEcCCCC
Confidence 9999875
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=4.9e-21 Score=196.00 Aligned_cols=134 Identities=19% Similarity=0.285 Sum_probs=63.6
Q ss_pred hhhcccccceeecccCCCCcccccccc-cCCCCcEEEecCCCCCCC--CCCCc-CcCcccEEEccCCccccccccccc--
Q 046441 19 LCELSCRLEYLRLRYCEGLVKLPQSSL-SLSSLREIEICKCSSLVS--FPEVA-LPSKLKKIRISSCDALKSLPEAWM-- 92 (465)
Q Consensus 19 l~~~~~~L~~L~l~~~~~l~~l~~~~~-~l~~L~~L~l~~~~~l~~--~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~-- 92 (465)
+...+++|++|++++|......+..+. .+++|++|++++|..+.. ++.+. .+++|++|++++|. +.+....+.
T Consensus 100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~ 178 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSH 178 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGG
T ss_pred HHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHH
Confidence 334456666666666653222222232 466666666666644333 22222 36666666666654 333221111
Q ss_pred -cCCCCCccEEEecCCc-Ccce--ecCc-cCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccC
Q 046441 93 -CDTNSSLEILEIWICC-SLTY--IAGV-QLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGN 166 (465)
Q Consensus 93 -~~~~~~L~~L~l~~~~-~l~~--~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 166 (465)
...+++|+.|++++|. .+.. +... ..+++|+.|++.+|..++.+ +..+.. +++|++|.++.
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l--~~~~~~-----------~~~L~~L~l~~ 244 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL--ATLLQR-----------APQLEELGTGG 244 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH--HHHHHH-----------CTTCSEEECSB
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH--HHHHhc-----------CCcceEccccc
Confidence 1133566666666653 1110 0000 22456666666666444443 333332 45666666544
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=2e-21 Score=198.86 Aligned_cols=376 Identities=13% Similarity=0.110 Sum_probs=191.5
Q ss_pred hhhcccccceeecccCCCCc---ccccc------------cccCCCCcEEEecCCCCCCCCC--CCcC-cCc-ccEEEcc
Q 046441 19 LCELSCRLEYLRLRYCEGLV---KLPQS------------SLSLSSLREIEICKCSSLVSFP--EVAL-PSK-LKKIRIS 79 (465)
Q Consensus 19 l~~~~~~L~~L~l~~~~~l~---~l~~~------------~~~l~~L~~L~l~~~~~l~~~~--~~~~-l~~-L~~L~l~ 79 (465)
+...|++|++|++++|+... .+|.. ...+++|++|++++| .+.... .++. +++ |++|++.
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECc
Confidence 34556899999998876532 22221 227899999999988 333211 2223 444 9999999
Q ss_pred CCccccccccccccCCCCCccEEEecCCcCcceecC------ccCCCCccEEeeccccCcccc---ccccccccCCCCCC
Q 046441 80 SCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAG------VQLPRSLKRLHILLCNNIRTL---TVEEGIQCSNSSSS 150 (465)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~------~~~~~~L~~L~l~~c~~l~~~---~~~~~~~~~~~~~~ 150 (465)
+|..+...........+++|++|++++|. +.+... ...+++|+.|+++++ .++.+ .++..+..
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~------ 218 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARN------ 218 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHH------
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhh------
Confidence 98754432222222356899999999983 332211 134579999999774 33311 00221222
Q ss_pred chhhhcccCCeeeccCCCCccccccCCCcchhhhhc----------------------ccCCCCCCccEEEecCCCChhh
Q 046441 151 SRRYISSLLEHLEIGNCRSLTCIFSKNELPATLESL----------------------EVGNLPPSLKVLDIYGCPKLES 208 (465)
Q Consensus 151 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l----------------------~~~~~~~~L~~L~l~~~~~l~~ 208 (465)
+++|++|++++|. +.. ++..+... ....+ ++|+.+++.++ ....
T Consensus 219 -----~~~L~~L~L~~~~-~~~------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~-~~~~ 284 (592)
T 3ogk_B 219 -----CRSLVSVKVGDFE-ILE------LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP-RKLCRLGLSYM-GPNE 284 (592)
T ss_dssp -----CTTCCEEECSSCB-GGG------GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC-TTCCEEEETTC-CTTT
T ss_pred -----CCCCcEEeccCcc-HHH------HHHHHhhhhHHHhhcccccccccchHHHHHHhhcc-ccccccCcccc-chhH
Confidence 6889999999853 222 11111111 00111 44555555442 2233
Q ss_pred hhhhhcCCCCCcEEeccccccccc-cccccccCccccEEecccCcccccCCCCCCCCCCCceEEEec----------CCC
Q 046441 209 IAERLDNNTSLETISILCCENLKI-LPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYG----------CER 277 (465)
Q Consensus 209 ~~~~~~~l~~L~~L~l~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~----------~~~ 277 (465)
++..+..+++|++|++++|..... ++..+..+++|++|++.++.....++.....+++|++|++++ |..
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 444455566666666666552111 122234556666666653211111222222344666666663 433
Q ss_pred cCc--ccccccCCCcccceeeccCCCCCccC--CC-CCCCccceeeecC---Ccccccc-----cccccccCCCCCCccE
Q 046441 278 LEA--LPKGLHNLKSLQELRIGRGVELPSLE--ED-GLPTNLHSLEIDG---NMEIWKS-----TIEWGRGFHRFSSLRC 344 (465)
Q Consensus 278 ~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~--~~-~~~~~L~~L~l~~---~~~~~~~-----~~~~~~~~~~~~~L~~ 344 (465)
++. ++.....+++|++|+++.+ .+.... .. ..+++|++|++++ |..+++. .... +.++++|++
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~---~~~~~~L~~ 440 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAVYVS-DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL---LIGCKKLRR 440 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEEEES-CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH---HHHCTTCCE
T ss_pred cCHHHHHHHHhhCccCeEEEeecC-CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH---HHhCCCCCE
Confidence 332 1222234566666666333 222110 01 1245666666653 2233321 1111 334666777
Q ss_pred EEecCCCCcccc--cccccccccCCCCCccccceEeccCCCCCcc--ccccccCCCCcceEEecCCCCCCc--CCC-CCC
Q 046441 345 LAISGCDDDMVS--FPLEDKRLGTALPLPACLASLMIGNFPNLER--LSSSIVDLQNLTELYLGDCPKLKY--FPE-KGL 417 (465)
Q Consensus 345 L~l~~~~~~l~~--~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~c~~l~~--l~~-~~~ 417 (465)
|++++|...+.. +.... ...++|++|++++| +++. ++..+..+++|++|++++|+ ++. ++. ...
T Consensus 441 L~L~~~~~~l~~~~~~~~~-------~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~ 511 (592)
T 3ogk_B 441 FAFYLRQGGLTDLGLSYIG-------QYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTK 511 (592)
T ss_dssp EEEECCGGGCCHHHHHHHH-------HSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHH
T ss_pred EEEecCCCCccHHHHHHHH-------HhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHh
Confidence 777654111111 11000 12456777777764 4543 33345667778888888765 443 121 112
Q ss_pred cccccEEeecCCc
Q 046441 418 PSSLLRLYIDECP 430 (465)
Q Consensus 418 ~~~L~~L~l~~c~ 430 (465)
+++|++|++++|.
T Consensus 512 l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 512 LPSLRYLWVQGYR 524 (592)
T ss_dssp CSSCCEEEEESCB
T ss_pred cCccCeeECcCCc
Confidence 5777788887776
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=3.1e-18 Score=168.98 Aligned_cols=222 Identities=19% Similarity=0.207 Sum_probs=178.3
Q ss_pred CCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCce
Q 046441 191 LPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSK 269 (465)
Q Consensus 191 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~ 269 (465)
+|+++++|++++|......+..|..+++|++|++++|......+..+.++++|++|++++| .++.++. .+..+++|+.
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCE
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCE
Confidence 4578999999997643444567899999999999998766655678889999999999998 6777766 4566889999
Q ss_pred EEEecCCCcCccc-ccccCCCcccceeeccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCCCCccEEE
Q 046441 270 LRIYGCERLEALP-KGLHNLKSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLA 346 (465)
Q Consensus 270 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 346 (465)
|++++|. +..++ ..+..+++|++|++++|..+..++. ...+++|++|++++|. +.... . +..+++|++|+
T Consensus 152 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~----~~~l~~L~~L~ 224 (452)
T 3zyi_A 152 LWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-N----LTPLVGLEELE 224 (452)
T ss_dssp EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-C----CTTCTTCCEEE
T ss_pred EECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-c----ccccccccEEE
Confidence 9999987 44554 4688999999999999877777765 3567899999999998 34332 1 67889999999
Q ss_pred ecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-cccCCCCcceEEecCCCCCCcCCCCCC--cccccE
Q 046441 347 ISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGDCPKLKYFPEKGL--PSSLLR 423 (465)
Q Consensus 347 l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~ 423 (465)
+++| .+..++... +..+++|++|++.+ ++++.++. .+..+++|++|++++ +.++.++...+ +++|++
T Consensus 225 Ls~N--~l~~~~~~~------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 225 MSGN--HFPEIRPGS------FHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp CTTS--CCSEECGGG------GTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCE
T ss_pred CcCC--cCcccCccc------ccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCC-CcCCccChHHhccccCCCE
Confidence 9998 666554322 24667999999999 58887754 788899999999999 58888887543 689999
Q ss_pred EeecCCc
Q 046441 424 LYIDECP 430 (465)
Q Consensus 424 L~l~~c~ 430 (465)
|++.++|
T Consensus 295 L~L~~Np 301 (452)
T 3zyi_A 295 LHLHHNP 301 (452)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 9999875
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=9.7e-18 Score=170.18 Aligned_cols=255 Identities=29% Similarity=0.355 Sum_probs=132.7
Q ss_pred CCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEEEecCCcCcceecCccCCCCccEEee
Q 046441 48 SSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAGVQLPRSLKRLHI 127 (465)
Q Consensus 48 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 127 (465)
.+++.|+++++ .++.+|.. ..++|++|++++|. ++.++.. .++|+.|++++| .++.++. .+++|+.|++
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~-l~~~L~~L~L~~N~-l~~lp~~-----l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDC-LPAHITTLVIPDNN-LTSLPAL-----PPELRTLEVSGN-QLTSLPV--LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSC-CCTTCSEEEECSCC-CSCCCCC-----CTTCCEEEECSC-CCSCCCC--CCTTCCEEEE
T ss_pred CCCcEEEecCC-CcCccChh-hCCCCcEEEecCCC-CCCCCCc-----CCCCCEEEcCCC-cCCcCCC--CCCCCCEEEC
Confidence 45888888887 67777742 23788888888864 6766652 377888888887 5666654 5567777777
Q ss_pred ccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChh
Q 046441 128 LLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLE 207 (465)
Q Consensus 128 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~ 207 (465)
+++ .++.+ |. . +++|+.|++++ +.++. ++. .+++|++|++++|. +.
T Consensus 109 s~N-~l~~l--~~---~-----------l~~L~~L~L~~-N~l~~-lp~--------------~l~~L~~L~Ls~N~-l~ 154 (622)
T 3g06_A 109 FSN-PLTHL--PA---L-----------PSGLCKLWIFG-NQLTS-LPV--------------LPPGLQELSVSDNQ-LA 154 (622)
T ss_dssp CSC-CCCCC--CC---C-----------CTTCCEEECCS-SCCSC-CCC--------------CCTTCCEEECCSSC-CS
T ss_pred cCC-cCCCC--CC---C-----------CCCcCEEECCC-CCCCc-CCC--------------CCCCCCEEECcCCc-CC
Confidence 663 44444 33 0 34566666665 34443 221 01455666665543 33
Q ss_pred hhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccC
Q 046441 208 SIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHN 287 (465)
Q Consensus 208 ~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 287 (465)
.+|. ..++|+.|++++|... .+| ..+++|+.|++++| .++.++..
T Consensus 155 ~l~~---~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N-~l~~l~~~--------------------------- 199 (622)
T 3g06_A 155 SLPA---LPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDN-QLASLPTL--------------------------- 199 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSS-CCSCCCCC---------------------------
T ss_pred CcCC---ccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCC-CCCCCCCc---------------------------
Confidence 3332 2334555555543322 233 22344555555544 33333321
Q ss_pred CCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCC
Q 046441 288 LKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTA 367 (465)
Q Consensus 288 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~ 367 (465)
.++|+.|++++| .+..++. .+++|++|++++|. +.... ..+++|++|++++| .+..+|.
T Consensus 200 ~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls~N~-L~~lp-------~~l~~L~~L~Ls~N--~L~~lp~-------- 258 (622)
T 3g06_A 200 PSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNR-LTSLP-------VLPSELKELMVSGN--RLTSLPM-------- 258 (622)
T ss_dssp CTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCCC-------CCCTTCCEEECCSS--CCSCCCC--------
T ss_pred cchhhEEECcCC-cccccCC--CCCCCCEEEccCCc-cCcCC-------CCCCcCcEEECCCC--CCCcCCc--------
Confidence 234444444444 2222321 23445555555543 22111 12345555555554 4444443
Q ss_pred CCCccccceEeccCCCCCccccccccCCCCcceEEecCC
Q 046441 368 LPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDC 406 (465)
Q Consensus 368 ~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 406 (465)
.+++|++|++++ ++++.+|..+.++++|+.|++++|
T Consensus 259 --~~~~L~~L~Ls~-N~L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 259 --LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp --CCTTCCEEECCS-SCCCSCCGGGGGSCTTCEEECCSC
T ss_pred --ccccCcEEeCCC-CCCCcCCHHHhhccccCEEEecCC
Confidence 224566666665 355555555556666666666663
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=2.6e-20 Score=190.62 Aligned_cols=377 Identities=17% Similarity=0.158 Sum_probs=177.5
Q ss_pred cccccceeecccCCCCcccc---------------cccccCCCCcEEEecCCCCCCCCC--CCc-CcCcccEEEccCCcc
Q 046441 22 LSCRLEYLRLRYCEGLVKLP---------------QSSLSLSSLREIEICKCSSLVSFP--EVA-LPSKLKKIRISSCDA 83 (465)
Q Consensus 22 ~~~~L~~L~l~~~~~l~~l~---------------~~~~~l~~L~~L~l~~~~~l~~~~--~~~-~l~~L~~L~l~~~~~ 83 (465)
.|++|+.|+++++.....+. .....+++|++|++++|. +.... .+. .+++|++|++.+|..
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 45777777777765432211 112356777777777763 22211 222 367777777777755
Q ss_pred ccccccccccCCCCCccEEEecCCcCcceecC-----c-cCCCCccEEeecccc-CccccccccccccCCCCCCchhhhc
Q 046441 84 LKSLPEAWMCDTNSSLEILEIWICCSLTYIAG-----V-QLPRSLKRLHILLCN-NIRTLTVEEGIQCSNSSSSSRRYIS 156 (465)
Q Consensus 84 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-----~-~~~~~L~~L~l~~c~-~l~~~~~~~~~~~~~~~~~~~~~~~ 156 (465)
+...........+++|++|++++|. ++.... . ..+++|+.|++.+|. .+..-.++.-+.. +
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~-----------~ 210 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR-----------C 210 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH-----------C
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh-----------C
Confidence 5442211111235777777777763 332211 1 234577777777654 1110000110111 4
Q ss_pred ccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCC------hhhhhhhhcCCCCCcEE-ecccccc
Q 046441 157 SLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPK------LESIAERLDNNTSLETI-SILCCEN 229 (465)
Q Consensus 157 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~------l~~~~~~~~~l~~L~~L-~l~~~~~ 229 (465)
++|++|++++|..+.. ++..+.. + ++|+.|++..+.. +..++..+.++++|+.| .+... .
T Consensus 211 ~~L~~L~L~~~~~~~~------l~~~~~~-----~-~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~ 277 (594)
T 2p1m_B 211 PNLKSLKLNRAVPLEK------LATLLQR-----A-PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-V 277 (594)
T ss_dssp TTCCEEECCTTSCHHH------HHHHHHH-----C-TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-C
T ss_pred CCCcEEecCCCCcHHH------HHHHHhc-----C-CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-c
Confidence 6677777777643332 2222222 2 5677776554431 22333445555555555 23221 1
Q ss_pred ccccccccccCccccEEecccCccccc--CCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccC--------
Q 046441 230 LKILPSGLHNLRQLQEISIEKCGNLES--FPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRG-------- 299 (465)
Q Consensus 230 ~~~l~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-------- 299 (465)
...++..+..+++|++|++++|. ++. +......+++|++|++.+|.....++.....+++|++|++.+|
T Consensus 278 ~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~ 356 (594)
T 2p1m_B 278 PAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPN 356 (594)
T ss_dssp GGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCS
T ss_pred hhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccC
Confidence 12233333456777777777764 332 1112234556777777766211122222234566666666332
Q ss_pred CCCCccCC---CCCCCccceeeecCCcccccccccccccCCCCCCccEEEec-----CCCCcccccccc------cc---
Q 046441 300 VELPSLEE---DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAIS-----GCDDDMVSFPLE------DK--- 362 (465)
Q Consensus 300 ~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~~l~~~~~~------~~--- 362 (465)
..+..... ...+++|++|.+..+.......... ...+++|++|+++ +| ..+...+.. ..
T Consensus 357 ~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l---~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~~~l~~~~~ 432 (594)
T 2p1m_B 357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI---ARNRPNMTRFRLCIIEPKAP-DYLTLEPLDIGFGAIVEHCK 432 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH---HHHCTTCCEEEEEESSTTCC-CTTTCCCTHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH---HhhCCCcceeEeecccCCCc-ccccCCchhhHHHHHHhhCC
Confidence 11111000 0113455555433332111111111 1124455555554 11 122211100 00
Q ss_pred ---ccc--C---------CCCCccccceEeccCCCCCcccc--ccccCCCCcceEEecCCCCCCcCCC---CCCcccccE
Q 046441 363 ---RLG--T---------ALPLPACLASLMIGNFPNLERLS--SSIVDLQNLTELYLGDCPKLKYFPE---KGLPSSLLR 423 (465)
Q Consensus 363 ---~~~--~---------~~~~~~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~ 423 (465)
.+. . .....++|++|++++| .++... .....+++|++|++++|+. +.... ...+++|++
T Consensus 433 ~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~ 510 (594)
T 2p1m_B 433 DLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRS 510 (594)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSE
T ss_pred CccEEeecCcccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCE
Confidence 000 0 0002467888888875 454322 1225689999999999764 43211 122589999
Q ss_pred EeecCCch
Q 046441 424 LYIDECPL 431 (465)
Q Consensus 424 L~l~~c~~ 431 (465)
|++++|+.
T Consensus 511 L~l~~~~~ 518 (594)
T 2p1m_B 511 LWMSSCSV 518 (594)
T ss_dssp EEEESSCC
T ss_pred EeeeCCCC
Confidence 99999976
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=164.51 Aligned_cols=201 Identities=16% Similarity=0.119 Sum_probs=106.3
Q ss_pred CCccEEEecCCCChhhhhhh-hcCCCCCcEEecccccccccccc--ccccCccccEEecccCcccccCCC-CCCCCCCCc
Q 046441 193 PSLKVLDIYGCPKLESIAER-LDNNTSLETISILCCENLKILPS--GLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLS 268 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~ 268 (465)
++|++|++++|. +..++.. ++.+++|++|++++|... .++. .+..+++|++|++++|..++.++. .+..+++|+
T Consensus 100 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 100 GSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp TTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred CCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 455555555543 3333333 555566666666654332 2333 455556666666666544444432 344455666
Q ss_pred eEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCC--CCCCccceeeecCCcccccccccccccCCCCCCccEEE
Q 046441 269 KLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEED--GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLA 346 (465)
Q Consensus 269 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 346 (465)
+|++++|......|..++.+++|++|++++|. +..++.. ..+++|++|++++|.......... ......+.++.++
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~~~~~~l~~l~ 255 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSEL-STGETNSLIKKFT 255 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEE
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCcccccccccc-ccccccchhhccc
Confidence 66666654333334555566666666666653 2333221 224566666666665222111110 0022345667777
Q ss_pred ecCCCCccc-----ccccccccccCCCCCccccceEeccCCCCCcccccc-ccCCCCcceEEecCCC
Q 046441 347 ISGCDDDMV-----SFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSS-IVDLQNLTELYLGDCP 407 (465)
Q Consensus 347 l~~~~~~l~-----~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~ 407 (465)
+.++ .+. .++... ..+++|++|++++ ++++.+|.. +..+++|++|++++|+
T Consensus 256 L~~~--~l~~~~l~~l~~~l-------~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 256 FRNV--KITDESLFQVMKLL-------NQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EESC--BCCHHHHHHHHHHH-------HTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccc--cccCcchhhhHHHH-------hcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 7765 222 222222 2456888888888 588888875 4788889999988853
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=1.7e-18 Score=171.99 Aligned_cols=248 Identities=13% Similarity=0.079 Sum_probs=168.7
Q ss_pred HHHHHhhhhhcccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCcccccccccc
Q 046441 12 EKDQQQQLCELSCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAW 91 (465)
Q Consensus 12 ~~~~l~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 91 (465)
+...+..+...+++|++|++++|......|..++.+++|++|++++| .+...++++.+++|++|++++|. +..++..
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~- 98 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNY-VQELLVG- 98 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEECTTCTTCCEEECCSSE-EEEEEEC-
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcccccCCCCCEEEecCCc-CCCCCCC-
Confidence 34556555556679999999999874444568899999999999998 55655567889999999999974 6666544
Q ss_pred ccCCCCCccEEEecCCcCcceecCccCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCcc
Q 046441 92 MCDTNSSLEILEIWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLT 171 (465)
Q Consensus 92 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 171 (465)
++|+.|++++| .+..++.. .+++|+.|+++++ .++.+ .|..+.. +++|+.|++++ +.+.
T Consensus 99 -----~~L~~L~L~~N-~l~~~~~~-~l~~L~~L~L~~N-~l~~~-~~~~~~~-----------l~~L~~L~Ls~-N~l~ 157 (487)
T 3oja_A 99 -----PSIETLHAANN-NISRVSCS-RGQGKKNIYLANN-KITML-RDLDEGC-----------RSRVQYLDLKL-NEID 157 (487)
T ss_dssp -----TTCCEEECCSS-CCCCEEEC-CCSSCEEEECCSS-CCCSG-GGBCGGG-----------GSSEEEEECTT-SCCC
T ss_pred -----CCcCEEECcCC-cCCCCCcc-ccCCCCEEECCCC-CCCCC-CchhhcC-----------CCCCCEEECCC-CCCC
Confidence 78999999997 56665543 3468888888875 34433 0223333 57788888887 5555
Q ss_pred ccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccC
Q 046441 172 CIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKC 251 (465)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~ 251 (465)
. .....+. ..+ ++|+.|++++|. +..++. ...+++|+.|++++|... .+|+.+..+++|+.|++++|
T Consensus 158 ~-~~~~~l~--------~~l-~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 158 T-VNFAELA--------ASS-DTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp E-EEGGGGG--------GGT-TTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTS
T ss_pred C-cChHHHh--------hhC-CcccEEecCCCc-cccccc-cccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCC
Confidence 4 2211110 122 678888888865 444433 345778888888876544 35555777788888888877
Q ss_pred cccccCCCCCCCCCCCceEEEecCCCc-CcccccccCCCcccceeec
Q 046441 252 GNLESFPEGGLPCAKLSKLRIYGCERL-EALPKGLHNLKSLQELRIG 297 (465)
Q Consensus 252 ~~l~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~ 297 (465)
.+..+|..+..+++|+.|++++|... ..+|..+..++.|+.++++
T Consensus 225 -~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 225 -KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -cCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 56667766666677888888777644 3455566677777777665
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=1.1e-17 Score=156.18 Aligned_cols=242 Identities=21% Similarity=0.184 Sum_probs=145.4
Q ss_pred ceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCC--CcCcCcccEEEccCCccccccc---cccccCCCCCccE
Q 046441 27 EYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE--VALPSKLKKIRISSCDALKSLP---EAWMCDTNSSLEI 101 (465)
Q Consensus 27 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~~~~L~~ 101 (465)
+.++.+++.. +.+|..+ .++|++|++++| .++.+|. ++.+++|++|+++++. +..++ ..+ ...++|++
T Consensus 10 ~~l~c~~~~l-~~ip~~~--~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--~~~~~L~~ 82 (306)
T 2z66_A 10 TEIRCNSKGL-TSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSD--FGTTSLKY 82 (306)
T ss_dssp TEEECCSSCC-SSCCSCC--CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHH--HSCSCCCE
T ss_pred CEEEcCCCCc-ccCCCCC--CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCc-cCcccCccccc--ccccccCE
Confidence 3556655544 6666543 367778888776 5566663 4557777777777754 44332 111 23466666
Q ss_pred EEecCCcCcceecCccCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcch
Q 046441 102 LEIWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPA 181 (465)
Q Consensus 102 L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 181 (465)
|+++++ .+..+ |..+.. +++|++|++++ +.++. ++. ..
T Consensus 83 L~Ls~n-~i~~l-------------------------~~~~~~-----------l~~L~~L~l~~-n~l~~-~~~---~~ 120 (306)
T 2z66_A 83 LDLSFN-GVITM-------------------------SSNFLG-----------LEQLEHLDFQH-SNLKQ-MSE---FS 120 (306)
T ss_dssp EECCSC-SEEEE-------------------------EEEEET-----------CTTCCEEECTT-SEEES-STT---TT
T ss_pred EECCCC-ccccC-------------------------hhhcCC-----------CCCCCEEECCC-Ccccc-ccc---ch
Confidence 666665 33332 222222 35566666665 34443 211 00
Q ss_pred hhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEecccccccc-ccccccccCccccEEecccCcccccC-CC
Q 046441 182 TLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLK-ILPSGLHNLRQLQEISIEKCGNLESF-PE 259 (465)
Q Consensus 182 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~l~~l-~~ 259 (465)
.+ ..+ ++|++|++++|......+..+..+++|++|++++|.... .+|..+..+++|++|++++| .++.+ +.
T Consensus 121 ~~-----~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 193 (306)
T 2z66_A 121 VF-----LSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT 193 (306)
T ss_dssp TT-----TTC-TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT
T ss_pred hh-----hhc-cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHH
Confidence 11 333 667777777765434445556777888888888776554 35677777888888888887 44444 44
Q ss_pred CCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCC-CCCC-CccceeeecCCcc
Q 046441 260 GGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE-DGLP-TNLHSLEIDGNME 324 (465)
Q Consensus 260 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~-~~L~~L~l~~~~~ 324 (465)
.+..+++|+.|++++|......+..+..+++|++|++++|......+. ...+ ++|++|++++|..
T Consensus 194 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 556677888888888764333334567788888888888854333332 2333 5888888888873
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=2.3e-17 Score=154.15 Aligned_cols=242 Identities=21% Similarity=0.235 Sum_probs=165.1
Q ss_pred EEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEEEecCCcCcceecCccCCCCccEEeecccc
Q 046441 52 EIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAGVQLPRSLKRLHILLCN 131 (465)
Q Consensus 52 ~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~ 131 (465)
.++.+++ .++.+|. +..++|++|+++++. +..++.... ..+++|++|+++++ .+....
T Consensus 11 ~l~c~~~-~l~~ip~-~~~~~l~~L~L~~n~-l~~i~~~~~-~~l~~L~~L~L~~n-~l~~~~----------------- 68 (306)
T 2z66_A 11 EIRCNSK-GLTSVPT-GIPSSATRLELESNK-LQSLPHGVF-DKLTQLTKLSLSSN-GLSFKG----------------- 68 (306)
T ss_dssp EEECCSS-CCSSCCS-CCCTTCCEEECCSSC-CCCCCTTTT-TTCTTCSEEECCSS-CCCEEE-----------------
T ss_pred EEEcCCC-CcccCCC-CCCCCCCEEECCCCc-cCccCHhHh-hccccCCEEECCCC-ccCccc-----------------
Confidence 4555443 5566653 334677777777654 555554421 23466666666665 222110
Q ss_pred CccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhh-
Q 046441 132 NIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIA- 210 (465)
Q Consensus 132 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~- 210 (465)
.. +..+.. +++|++|++++ +.+.. ++. .+ ..+ ++|++|++++|. +..++
T Consensus 69 ---~~--~~~~~~-----------~~~L~~L~Ls~-n~i~~-l~~-----~~-----~~l-~~L~~L~l~~n~-l~~~~~ 118 (306)
T 2z66_A 69 ---CC--SQSDFG-----------TTSLKYLDLSF-NGVIT-MSS-----NF-----LGL-EQLEHLDFQHSN-LKQMSE 118 (306)
T ss_dssp ---EE--EHHHHS-----------CSCCCEEECCS-CSEEE-EEE-----EE-----ETC-TTCCEEECTTSE-EESSTT
T ss_pred ---Cc--cccccc-----------ccccCEEECCC-Ccccc-Chh-----hc-----CCC-CCCCEEECCCCc-cccccc
Confidence 00 111211 46788999988 45554 322 22 344 789999999965 55544
Q ss_pred -hhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccc-cCCCCCCCCCCCceEEEecCCCcCcccccccCC
Q 046441 211 -ERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLE-SFPEGGLPCAKLSKLRIYGCERLEALPKGLHNL 288 (465)
Q Consensus 211 -~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 288 (465)
..+..+++|++|++++|......+..+..+++|++|++++|.... .++..+..+++|+.|++++|......|..+..+
T Consensus 119 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 198 (306)
T 2z66_A 119 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198 (306)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC
Confidence 368899999999999988776677778889999999999984333 367777788999999999987544446788899
Q ss_pred CcccceeeccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCC-CCccEEEecCC
Q 046441 289 KSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRF-SSLRCLAISGC 350 (465)
Q Consensus 289 ~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~ 350 (465)
++|++|++++|. +..++. ...+++|++|++++|.. ....+.. +..+ ++|++|++++|
T Consensus 199 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~---~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 199 SSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHI-MTSKKQE---LQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCC-CBCSSSS---CCCCCTTCCEEECTTC
T ss_pred CCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCC-cccCHHH---HHhhhccCCEEEccCC
Confidence 999999999985 444433 35678999999999984 3333322 5566 49999999997
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=4.2e-17 Score=150.69 Aligned_cols=202 Identities=21% Similarity=0.230 Sum_probs=141.7
Q ss_pred CCCCccEEEecCCCChhhhh-hhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccC-CCCCCCCCCCc
Q 046441 191 LPPSLKVLDIYGCPKLESIA-ERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESF-PEGGLPCAKLS 268 (465)
Q Consensus 191 ~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~ 268 (465)
+|++|++|+++++. +..++ ..+..+++|++|++++|......+..+..+++|++|++++|..++.+ +..+..+++|+
T Consensus 30 ~~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 30 IPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp CCTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 34788999998865 44444 45788899999999887655545777888899999999988657766 44566678899
Q ss_pred eEEEecCCCcCcccccccCCCcccceeeccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCCCCccEEE
Q 046441 269 KLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLA 346 (465)
Q Consensus 269 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 346 (465)
+|++++|......+..+..+++|++|++++|. +..++. .+.+++|++|++++|. +....... +..+++|++|+
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~ 183 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNR-ISSVPERA---FRGLHSLDRLL 183 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEE
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCc-ccccCHHH---hcCccccCEEE
Confidence 99998886544446667888889999988874 444443 3556788888888876 33333322 56778888888
Q ss_pred ecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-cccCCCCcceEEecCCC
Q 046441 347 ISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGDCP 407 (465)
Q Consensus 347 l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 407 (465)
+++| .+..+... .+..+++|++|++++ ++++.++. .+..+++|++|++++++
T Consensus 184 l~~n--~l~~~~~~------~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 184 LHQN--RVAHVHPH------AFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCSS--CCCEECTT------TTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CCCC--cccccCHh------HccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence 8886 44444221 123456788888887 57777764 46777888888888743
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=5.2e-20 Score=182.35 Aligned_cols=349 Identities=19% Similarity=0.173 Sum_probs=222.9
Q ss_pred cccccceeecccCCCCc----ccccccccCCCCcEEEecCCCCCCCCC--CCc-CcC----cccEEEccCCcccccc---
Q 046441 22 LSCRLEYLRLRYCEGLV----KLPQSSLSLSSLREIEICKCSSLVSFP--EVA-LPS----KLKKIRISSCDALKSL--- 87 (465)
Q Consensus 22 ~~~~L~~L~l~~~~~l~----~l~~~~~~l~~L~~L~l~~~~~l~~~~--~~~-~l~----~L~~L~l~~~~~l~~~--- 87 (465)
.+++|++|++++|..-. .++..+..+++|++|++++|. +.... .+. .++ +|++|++++|. +...
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~ 103 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCG 103 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHH
Confidence 44899999999998632 456677889999999999983 43311 111 133 79999999986 5532
Q ss_pred --ccccccCCCCCccEEEecCCcCcceecCc-------cCCCCccEEeeccccCccccc---cccccccCCCCCCchhhh
Q 046441 88 --PEAWMCDTNSSLEILEIWICCSLTYIAGV-------QLPRSLKRLHILLCNNIRTLT---VEEGIQCSNSSSSSRRYI 155 (465)
Q Consensus 88 --~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-------~~~~~L~~L~l~~c~~l~~~~---~~~~~~~~~~~~~~~~~~ 155 (465)
+..+ ..+++|++|+++++. +...... ...++|++|++++| .++... ++..+..
T Consensus 104 ~l~~~l--~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~----------- 168 (461)
T 1z7x_W 104 VLSSTL--RTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRA----------- 168 (461)
T ss_dssp HHHHHT--TSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHH-----------
T ss_pred HHHHHH--ccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhh-----------
Confidence 2221 456899999999984 5432211 12357999999997 344320 0222222
Q ss_pred cccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChh----hhhhhhcCCCCCcEEecccccccc
Q 046441 156 SSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLE----SIAERLDNNTSLETISILCCENLK 231 (465)
Q Consensus 156 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~~~~~~ 231 (465)
+++|++|++++ +.+.. .+...+...+.. .. ++|++|++++|..-. .++..+..+++|++|++++|....
T Consensus 169 ~~~L~~L~L~~-n~i~~-~~~~~l~~~l~~----~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 169 KPDFKELTVSN-NDINE-AGVRVLCQGLKD----SP-CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp CTTCCEEECCS-SBCHH-HHHHHHHHHHHH----SC-CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred CCCCCEEECcC-CCcch-HHHHHHHHHHhc----CC-CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 58899999999 44654 222222222211 12 589999999986333 267778899999999999986433
Q ss_pred c----c-ccccccCccccEEecccCccccc-----CCCCCCCCCCCceEEEecCCCcCc----ccccc-cCCCcccceee
Q 046441 232 I----L-PSGLHNLRQLQEISIEKCGNLES-----FPEGGLPCAKLSKLRIYGCERLEA----LPKGL-HNLKSLQELRI 296 (465)
Q Consensus 232 ~----l-~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~-~~l~~L~~L~l 296 (465)
. + +.....+++|++|++++| .++. ++.....+++|++|++++|..-.. +...+ ...++|++|++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 2 1 222335789999999999 5554 444444577999999999863222 22222 23369999999
Q ss_pred ccCCCCCcc-----CC-CCCCCccceeeecCCcccccccccccccCC-CCCCccEEEecCCCCccc-----ccccccccc
Q 046441 297 GRGVELPSL-----EE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFH-RFSSLRCLAISGCDDDMV-----SFPLEDKRL 364 (465)
Q Consensus 297 ~~~~~~~~~-----~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~l~-----~~~~~~~~~ 364 (465)
++|. +... +. ....++|++|++++|.............+. ..++|++|++++| .+. .++...
T Consensus 321 ~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n--~i~~~~~~~l~~~l--- 394 (461)
T 1z7x_W 321 KSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC--DVSDSSCSSLAATL--- 394 (461)
T ss_dssp TTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS--CCCHHHHHHHHHHH---
T ss_pred CCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC--CCChhhHHHHHHHH---
Confidence 9985 3322 11 134589999999999743332222211122 2679999999998 444 344332
Q ss_pred cCCCCCccccceEeccCCCCCccccc-----cc-cCCCCcceEEecCC
Q 046441 365 GTALPLPACLASLMIGNFPNLERLSS-----SI-VDLQNLTELYLGDC 406 (465)
Q Consensus 365 ~~~~~~~~~L~~L~l~~c~~l~~l~~-----~~-~~l~~L~~L~l~~c 406 (465)
...++|++|++++ ++++.... .+ ....+|+.|.+.++
T Consensus 395 ----~~~~~L~~L~l~~-N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 395 ----LANHSLRELDLSN-NCLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp ----HHCCCCCEEECCS-SSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred ----HhCCCccEEECCC-CCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 2457999999999 47765422 12 12456888887774
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=9.9e-18 Score=154.90 Aligned_cols=174 Identities=20% Similarity=0.240 Sum_probs=77.9
Q ss_pred CCccEEEecCCCChhhh-hhhhcCCCCCcEEecccccccccc-ccccccCccccEEecccCcccccC-CCCCCCCCCCce
Q 046441 193 PSLKVLDIYGCPKLESI-AERLDNNTSLETISILCCENLKIL-PSGLHNLRQLQEISIEKCGNLESF-PEGGLPCAKLSK 269 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~ 269 (465)
++|++|++++|. +..+ +..+..+++|++|++++|..+..+ +..+..+++|++|++++| .+..+ +..+..+++|+.
T Consensus 56 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 56 RNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQY 133 (285)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCE
Confidence 445555555433 2222 334445555555555554423333 344444555555555554 23333 223333445555
Q ss_pred EEEecCCCcCcccccccCCCcccceeeccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCCCCccEEEe
Q 046441 270 LRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAI 347 (465)
Q Consensus 270 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 347 (465)
|++++|......+..++.+++|++|++++| .+..++. ...+++|++|++++|. +....+.. +..+++|++|++
T Consensus 134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l 208 (285)
T 1ozn_A 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHA---FRDLGRLMTLYL 208 (285)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEEC
T ss_pred EECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccCHhH---ccCcccccEeeC
Confidence 555554322222223445555555555554 2333322 2334555555555554 22222211 445556666666
Q ss_pred cCCCCcccccccccccccCCCCCccccceEeccC
Q 046441 348 SGCDDDMVSFPLEDKRLGTALPLPACLASLMIGN 381 (465)
Q Consensus 348 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 381 (465)
++| .+..++... +...++|++|++++
T Consensus 209 ~~n--~l~~~~~~~------~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 209 FAN--NLSALPTEA------LAPLRALQYLRLND 234 (285)
T ss_dssp CSS--CCSCCCHHH------HTTCTTCCEEECCS
T ss_pred CCC--cCCcCCHHH------cccCcccCEEeccC
Confidence 655 444433221 11344566666655
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=1.1e-17 Score=156.88 Aligned_cols=212 Identities=15% Similarity=0.139 Sum_probs=129.4
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRI 272 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 272 (465)
++|++|++++|......+..+..+++|++|++++|...... + +..+++|++|++++| .++.++. .++|+.|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~Ls~n-~l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D-LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E-ETTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h-hhhcCCCCEEECcCC-ccccccC----CCCcCEEEC
Confidence 56777777776533333455777777777777776544332 2 666777777777776 4554442 247777777
Q ss_pred ecCCCcCcccccccCCCcccceeeccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCC
Q 046441 273 YGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGC 350 (465)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 350 (465)
++|. +..++ ...+++|++|++++|. +..++. .+.+++|++|++++|.......... ...+++|++|++++|
T Consensus 107 ~~n~-l~~~~--~~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 107 ANNN-ISRVS--CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYN 179 (317)
T ss_dssp CSSC-CSEEE--ECCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTTS
T ss_pred CCCc-cCCcC--ccccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHH---hhccCcCCEEECCCC
Confidence 7765 33333 2335677777777763 333322 2445677777777776333222221 235677777777776
Q ss_pred CCcccccccccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCCC-CCcccccEEeecCC
Q 046441 351 DDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPEK-GLPSSLLRLYIDEC 429 (465)
Q Consensus 351 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c 429 (465)
.+..++... .+++|++|++++ ++++.++..+..+++|++|++++ +.++.+|.. ...++|++|++++|
T Consensus 180 --~l~~~~~~~--------~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 180 --FIYDVKGQV--------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp --CCCEEECCC--------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTC
T ss_pred --cCccccccc--------ccccCCEEECCC-CcCCcchhhhcccCcccEEECcC-CcccchhhHhhcCCCCCEEEccCC
Confidence 555554322 356777777777 57777766666777777777777 466666653 22567777777766
Q ss_pred c
Q 046441 430 P 430 (465)
Q Consensus 430 ~ 430 (465)
+
T Consensus 248 ~ 248 (317)
T 3o53_A 248 G 248 (317)
T ss_dssp C
T ss_pred C
Confidence 4
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=3e-17 Score=163.01 Aligned_cols=215 Identities=14% Similarity=0.116 Sum_probs=150.7
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRI 272 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 272 (465)
++|+.|++++|......|..+..+++|++|++++|...+..+ +..+++|++|++++| .++.++.. ++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~~----~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLVG----PSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEEC----TTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCCC----CCcCEEEC
Confidence 578888888865333345568888888888888876554333 777888888888888 56655532 58888888
Q ss_pred ecCCCcCcccccccCCCcccceeeccCCCCCccCC-CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCC
Q 046441 273 YGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCD 351 (465)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 351 (465)
++|. +..++. ..+++|++|++++|......+. .+.+++|++|++++|......+..+ ...+++|++|++++|
T Consensus 107 ~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~l~~L~~L~Ls~N- 179 (487)
T 3oja_A 107 ANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYN- 179 (487)
T ss_dssp CSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTTS-
T ss_pred cCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH---hhhCCcccEEecCCC-
Confidence 8876 344432 3467888888888753333232 3557788888888887333222222 236788888888887
Q ss_pred CcccccccccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCCC-CCcccccEEeecCCc
Q 046441 352 DDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPEK-GLPSSLLRLYIDECP 430 (465)
Q Consensus 352 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~c~ 430 (465)
.+..++... .+++|++|++++ ++++.+|..+..+++|+.|++++ +.++.+|.. ..+++|+.|++++|+
T Consensus 180 -~l~~~~~~~--------~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 180 -FIYDVKGQV--------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp -CCCEEECCC--------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred -ccccccccc--------cCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCC
Confidence 566654433 467888888888 58888877788888888888888 567777763 235788888888875
Q ss_pred hH
Q 046441 431 LI 432 (465)
Q Consensus 431 ~l 432 (465)
-.
T Consensus 249 l~ 250 (487)
T 3oja_A 249 FH 250 (487)
T ss_dssp BC
T ss_pred Cc
Confidence 43
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=4.2e-17 Score=146.52 Aligned_cols=204 Identities=19% Similarity=0.196 Sum_probs=123.7
Q ss_pred CCCCccEEEecCCCChhhhhh-hhcCCCCCcEEeccccccccccc-cccccCccccEEecccCcccccCCC-CCCCCCCC
Q 046441 191 LPPSLKVLDIYGCPKLESIAE-RLDNNTSLETISILCCENLKILP-SGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKL 267 (465)
Q Consensus 191 ~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L 267 (465)
+|++|++|++++|. +..++. .+..+++|++|++++|..+..++ ..+.++++|++|++++|..++.++. .+..+++|
T Consensus 29 ~~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 29 LPPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp CCTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CCCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 34578888888755 545444 46677777777777765444443 3556667777777776335555553 33445566
Q ss_pred ceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCcc-EEE
Q 046441 268 SKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR-CLA 346 (465)
Q Consensus 268 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~-~L~ 346 (465)
+.|++++|. +..+|. ++.+++|+ .|++|++++|..+....... +..+++|+ +|+
T Consensus 108 ~~L~l~~n~-l~~lp~-~~~l~~L~--------------------~L~~L~l~~N~~l~~i~~~~---~~~l~~L~~~L~ 162 (239)
T 2xwt_C 108 KFLGIFNTG-LKMFPD-LTKVYSTD--------------------IFFILEITDNPYMTSIPVNA---FQGLCNETLTLK 162 (239)
T ss_dssp CEEEEEEEC-CCSCCC-CTTCCBCC--------------------SEEEEEEESCTTCCEECTTT---TTTTBSSEEEEE
T ss_pred CEEeCCCCC-Cccccc-cccccccc--------------------cccEEECCCCcchhhcCccc---ccchhcceeEEE
Confidence 666666654 333443 44444444 01144444442233222222 55677777 788
Q ss_pred ecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-cccCC-CCcceEEecCCCCCCcCCCCCCcccccEE
Q 046441 347 ISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIVDL-QNLTELYLGDCPKLKYFPEKGLPSSLLRL 424 (465)
Q Consensus 347 l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 424 (465)
++++ .+..++... + ..++|++|+++++..++.++. .+..+ ++|++|++++ +.++.+|.. .+++|++|
T Consensus 163 l~~n--~l~~i~~~~------~-~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L 231 (239)
T 2xwt_C 163 LYNN--GFTSVQGYA------F-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKEL 231 (239)
T ss_dssp CCSC--CCCEECTTT------T-TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEE
T ss_pred cCCC--CCcccCHhh------c-CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCcee
Confidence 8776 555555432 1 225788888888435887765 56777 8888888888 678888775 45888888
Q ss_pred eecCCch
Q 046441 425 YIDECPL 431 (465)
Q Consensus 425 ~l~~c~~ 431 (465)
++.++..
T Consensus 232 ~l~~~~~ 238 (239)
T 2xwt_C 232 IARNTWT 238 (239)
T ss_dssp ECTTC--
T ss_pred eccCccC
Confidence 8887754
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=5.3e-18 Score=158.79 Aligned_cols=199 Identities=15% Similarity=0.077 Sum_probs=98.9
Q ss_pred CCCCCcEEecccccccccccccc--ccCccccEEecccCcccccCCCCCCCC-----CCCceEEEecCCCcCcccccccC
Q 046441 215 NNTSLETISILCCENLKILPSGL--HNLRQLQEISIEKCGNLESFPEGGLPC-----AKLSKLRIYGCERLEALPKGLHN 287 (465)
Q Consensus 215 ~l~~L~~L~l~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~ 287 (465)
.+++|++|++++|...+.+|..+ ..+++|++|++++| .++.++..+..+ ++|++|++++|......+..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 45555555555554444444443 45555555555555 333333222111 45666666555433333345555
Q ss_pred CCcccceeeccCCCCCc---cCCC--CCCCccceeeecCCcccc--cccccccccCCCCCCccEEEecCCCCcccccc-c
Q 046441 288 LKSLQELRIGRGVELPS---LEED--GLPTNLHSLEIDGNMEIW--KSTIEWGRGFHRFSSLRCLAISGCDDDMVSFP-L 359 (465)
Q Consensus 288 l~~L~~L~l~~~~~~~~---~~~~--~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~-~ 359 (465)
+++|++|++++|..... .+.. +.+++|++|++++|.... ...... +..+++|++|++++| .+...+ .
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---~~~l~~L~~L~Ls~N--~l~~~~~~ 246 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL---AAARVQLQGLDLSHN--SLRDAAGA 246 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH---HHTTCCCSEEECTTS--CCCSSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH---HhcCCCCCEEECCCC--cCCcccch
Confidence 56666666665532221 1111 344566666666665221 111111 234566666666665 333322 1
Q ss_pred ccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCCCCCcccccEEeecCC
Q 046441 360 EDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPEKGLPSSLLRLYIDEC 429 (465)
Q Consensus 360 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c 429 (465)
.. +..+++|++|++++ ++++.+|..+. ++|++|++++ +.++.+|.....++|++|+++++
T Consensus 247 ~~------~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 247 PS------CDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp SC------CCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTC
T ss_pred hh------hhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCC
Confidence 11 11345666666666 46666665443 6667777766 45666655333566677766665
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=1.3e-17 Score=156.04 Aligned_cols=227 Identities=18% Similarity=0.166 Sum_probs=150.5
Q ss_pred CCeeeccCCCCccccccCCCcchhhh--hcccCCCCCCccEEEecCCCChhhhhhhh--cCCCCCcEEeccccccccccc
Q 046441 159 LEHLEIGNCRSLTCIFSKNELPATLE--SLEVGNLPPSLKVLDIYGCPKLESIAERL--DNNTSLETISILCCENLKILP 234 (465)
Q Consensus 159 L~~L~l~~c~~l~~~~~~~~~~~~~~--~l~~~~~~~~L~~L~l~~~~~l~~~~~~~--~~l~~L~~L~l~~~~~~~~l~ 234 (465)
|+.|++++ +.++. ..++..+. .+....+ ++|++|++++|...+.+|..+ ..+++|++|++++|...+. |
T Consensus 65 L~~L~L~~-n~l~~----~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~ 137 (312)
T 1wwl_A 65 IKSLSLKR-LTVRA----ARIPSRILFGALRVLGI-SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-D 137 (312)
T ss_dssp HHHCCCCE-EEEEE----EECBHHHHHHHHHHHTT-SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-S
T ss_pred Hhhccccc-ccccC----CCcCHHHHHHHHHhcCc-CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-h
Confidence 78888877 55543 12222221 0000123 688888888876444566655 7888888888888765554 6
Q ss_pred cccccC-----ccccEEecccCcccccCC-CCCCCCCCCceEEEecCCCcCc--ccccc--cCCCcccceeeccCCCCCc
Q 046441 235 SGLHNL-----RQLQEISIEKCGNLESFP-EGGLPCAKLSKLRIYGCERLEA--LPKGL--HNLKSLQELRIGRGVELPS 304 (465)
Q Consensus 235 ~~~~~~-----~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~--~~l~~L~~L~l~~~~~~~~ 304 (465)
..+..+ ++|++|++++| .+..++ ..+..+++|++|++++|..... ++..+ +.+++|++|++++|. +..
T Consensus 138 ~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~ 215 (312)
T 1wwl_A 138 AWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-MET 215 (312)
T ss_dssp SHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCC
T ss_pred HHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-Ccc
Confidence 656555 88888888888 455555 5666778888888888864433 23333 778888888888874 442
Q ss_pred cCC-----CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEec
Q 046441 305 LEE-----DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMI 379 (465)
Q Consensus 305 ~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l 379 (465)
++. ...+++|++|++++|.. ....+... +..+++|++|++++| .+..+|... . ++|++|++
T Consensus 216 ~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~--~~~l~~L~~L~Ls~N--~l~~ip~~~--------~-~~L~~L~L 281 (312)
T 1wwl_A 216 PSGVCSALAAARVQLQGLDLSHNSL-RDAAGAPS--CDWPSQLNSLNLSFT--GLKQVPKGL--------P-AKLSVLDL 281 (312)
T ss_dssp HHHHHHHHHHTTCCCSEEECTTSCC-CSSCCCSC--CCCCTTCCEEECTTS--CCSSCCSSC--------C-SEEEEEEC
T ss_pred hHHHHHHHHhcCCCCCEEECCCCcC-Ccccchhh--hhhcCCCCEEECCCC--ccChhhhhc--------c-CCceEEEC
Confidence 221 12457888888888873 33221111 455788888888887 666666533 2 68888888
Q ss_pred cCCCCCccccccccCCCCcceEEecCCCCCCc
Q 046441 380 GNFPNLERLSSSIVDLQNLTELYLGDCPKLKY 411 (465)
Q Consensus 380 ~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 411 (465)
++ ++++.+|. +..+++|++|++++ +.++.
T Consensus 282 s~-N~l~~~p~-~~~l~~L~~L~L~~-N~l~~ 310 (312)
T 1wwl_A 282 SY-NRLDRNPS-PDELPQVGNLSLKG-NPFLD 310 (312)
T ss_dssp CS-SCCCSCCC-TTTSCEEEEEECTT-CTTTC
T ss_pred CC-CCCCCChh-HhhCCCCCEEeccC-CCCCC
Confidence 88 68888875 77888888888888 44543
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=4.9e-16 Score=139.50 Aligned_cols=152 Identities=18% Similarity=0.217 Sum_probs=105.6
Q ss_pred ccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhh-hhcCCCCCcEEeccccccccccc-
Q 046441 157 SLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAE-RLDNNTSLETISILCCENLKILP- 234 (465)
Q Consensus 157 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~l~- 234 (465)
++|++|++++ +.++. ++...+ ..+ ++|++|++++|..++.++. .|..+++|++|++++|+.+..++
T Consensus 31 ~~l~~L~l~~-n~l~~-i~~~~~---------~~l-~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 31 PSTQTLKLIE-THLRT-IPSHAF---------SNL-PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp TTCCEEEEES-CCCSE-ECTTTT---------TTC-TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CcccEEEEeC-CcceE-ECHHHc---------cCC-CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 4688888887 56666 443222 344 7899999999765666665 57899999999999855555554
Q ss_pred cccccCccccEEecccCcccccCCCCCCCCCCCc---eEEEecCCCcCcccc-cccCCCccc-ceeeccCCCCCccCCC-
Q 046441 235 SGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLS---KLRIYGCERLEALPK-GLHNLKSLQ-ELRIGRGVELPSLEED- 308 (465)
Q Consensus 235 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~---~L~l~~~~~~~~~~~-~~~~l~~L~-~L~l~~~~~~~~~~~~- 308 (465)
..+..+++|++|++++| .++.+|. +..+++|+ .|++++|..+..++. .+..+++|+ +|++++|. +..++..
T Consensus 99 ~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~ 175 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYA 175 (239)
T ss_dssp TSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTT
T ss_pred HHhCCCCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhh
Confidence 56778999999999998 5677776 55667787 999999855666654 477788888 88888773 3444432
Q ss_pred CCCCccceeeecCCc
Q 046441 309 GLPTNLHSLEIDGNM 323 (465)
Q Consensus 309 ~~~~~L~~L~l~~~~ 323 (465)
...++|++|++++|.
T Consensus 176 ~~~~~L~~L~L~~n~ 190 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNK 190 (239)
T ss_dssp TTTCEEEEEECTTCT
T ss_pred cCCCCCCEEEcCCCC
Confidence 112455555555553
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=1.3e-15 Score=140.80 Aligned_cols=193 Identities=19% Similarity=0.178 Sum_probs=118.9
Q ss_pred cccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEecccccccccccc
Q 046441 156 SSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPS 235 (465)
Q Consensus 156 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~ 235 (465)
+++++++++.+ +.++. ++. .+|++++.|++++|......+..+..+++|++|++++|.... ++.
T Consensus 9 l~~l~~l~~~~-~~l~~-ip~-------------~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~ 72 (290)
T 1p9a_G 9 VASHLEVNCDK-RNLTA-LPP-------------DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV 72 (290)
T ss_dssp STTCCEEECTT-SCCSS-CCS-------------CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC
T ss_pred cCCccEEECCC-CCCCc-CCC-------------CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC
Confidence 56677777776 55655 332 234678888888866333334567778888888888765433 333
Q ss_pred ccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcc-cccccCCCcccceeeccCCCCCccCC--CCCCC
Q 046441 236 GLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEAL-PKGLHNLKSLQELRIGRGVELPSLEE--DGLPT 312 (465)
Q Consensus 236 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~ 312 (465)
. ..+++|++|++++| .++.++.....+++|+.|++++|. ++.+ +..+..+++|++|++++|. +..++. ...++
T Consensus 73 ~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 148 (290)
T 1p9a_G 73 D-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTP 148 (290)
T ss_dssp C-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred C-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCC-CCccChhhccccc
Confidence 2 56778888888877 566777666667778888887775 3344 3456777777777777763 344433 23456
Q ss_pred ccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccC
Q 046441 313 NLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGN 381 (465)
Q Consensus 313 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 381 (465)
+|++|++++|. +....... +..+++|++|++++| .+..+|... ....+|+.|++.+
T Consensus 149 ~L~~L~L~~N~-l~~l~~~~---~~~l~~L~~L~L~~N--~l~~ip~~~-------~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 149 KLEKLSLANNN-LTELPAGL---LNGLENLDTLLLQEN--SLYTIPKGF-------FGSHLLPFAFLHG 204 (290)
T ss_dssp TCCEEECTTSC-CSCCCTTT---TTTCTTCCEEECCSS--CCCCCCTTT-------TTTCCCSEEECCS
T ss_pred CCCEEECCCCc-CCccCHHH---hcCcCCCCEEECCCC--cCCccChhh-------cccccCCeEEeCC
Confidence 67777777665 33333222 455666677776665 555555433 1334566666665
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=9.2e-16 Score=140.91 Aligned_cols=199 Identities=20% Similarity=0.193 Sum_probs=119.6
Q ss_pred CCCCccEEEecCCCChhhhhh-hhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCC-CCCCCCCCCc
Q 046441 191 LPPSLKVLDIYGCPKLESIAE-RLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFP-EGGLPCAKLS 268 (465)
Q Consensus 191 ~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~ 268 (465)
+|++|++|++++|. +..++. .+..+++|++|++++|......+..+.++++|++|++++| .++.++ ..+..+++|+
T Consensus 26 l~~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 26 LPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp SCTTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCC
T ss_pred CCCCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCcccc
Confidence 34678888888865 444443 5777888888888887554434456777888888888887 444444 3555677888
Q ss_pred eEEEecCCCcCcccccccCCCcccceeeccCCCCCc--cCC-CCCCCccceeeecCCcccccccccccccCCCCCCcc--
Q 046441 269 KLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPS--LEE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR-- 343 (465)
Q Consensus 269 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~-- 343 (465)
+|++++|......+..++.+++|++|++++|. +.. ++. .+.+++|++|++++|.. ....... +..+++|+
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l-~~~~~~~---~~~l~~L~~l 178 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTD---LRVLHQMPLL 178 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC-CEECGGG---GHHHHTCTTC
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCC-CcCCHHH---hhhhhhcccc
Confidence 88887775333333356777778888877764 222 222 24456677777776652 2222111 22333333
Q ss_pred --EEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-cccCCCCcceEEecCC
Q 046441 344 --CLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGDC 406 (465)
Q Consensus 344 --~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c 406 (465)
+|+++++ .+..++... ....+|++|++++ ++++.++. .+..+++|++|+++++
T Consensus 179 ~l~L~ls~n--~l~~~~~~~-------~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 179 NLSLDLSLN--PMNFIQPGA-------FKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CEEEECCSS--CCCEECTTS-------SCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ceeeecCCC--cccccCccc-------cCCCcccEEECCC-CceeecCHhHhcccccccEEEccCC
Confidence 6667665 444444322 1223677777776 45666655 3456677777777763
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=3.5e-15 Score=136.54 Aligned_cols=176 Identities=20% Similarity=0.249 Sum_probs=80.8
Q ss_pred CCccEEEecCCCChhhhhh-hhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCceE
Q 046441 193 PSLKVLDIYGCPKLESIAE-RLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKL 270 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L 270 (465)
+++++|++++|. +..++. .+..+++|++|++++|......+..+..+++|++|++++| .++.++. .+..+++|+.|
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEE
Confidence 556666666643 333332 3555556666666554332211222344555555555555 3333333 22334455555
Q ss_pred EEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCC
Q 046441 271 RIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGC 350 (465)
Q Consensus 271 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 350 (465)
++++|......+..++.+++|++|++++|. +..++ ... +..+++|++|++++|
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-----------------------~~~---~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLP-----------------------KGV---FDKLTSLKELRLYNN 167 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC-----------------------TTT---TTTCTTCCEEECCSS
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccC-----------------------HhH---ccCCcccceeEecCC
Confidence 555543222222233444444444444441 22221 111 344555555555554
Q ss_pred CCcccccccccccccCCCCCccccceEeccCCCCCccccc-cccCCCCcceEEecCC
Q 046441 351 DDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGDC 406 (465)
Q Consensus 351 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c 406 (465)
.+..++... +..+++|++|++++ ++++.++. .+..+++|+.|+++++
T Consensus 168 --~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 168 --QLKRVPEGA------FDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp --CCSCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred --cCcEeChhH------hccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCC
Confidence 333333311 12334555666655 35555554 3455666666666663
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=3.2e-15 Score=142.12 Aligned_cols=220 Identities=21% Similarity=0.215 Sum_probs=143.3
Q ss_pred ccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhh-hhcCCCCCcEEecccccccccc-c
Q 046441 157 SLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAE-RLDNNTSLETISILCCENLKIL-P 234 (465)
Q Consensus 157 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~l-~ 234 (465)
+++++|++++ +.++. ++...+ .++ ++|++|++++|...+.++. .|.+++++..+.+..++.+..+ +
T Consensus 30 ~~l~~L~Ls~-N~i~~-i~~~~f---------~~l-~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 30 RNAIELRFVL-TKLRV-IQKGAF---------SGF-GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp TTCSEEEEES-CCCSE-ECTTSS---------TTC-TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCCEEEccC-CcCCC-cCHHHH---------cCC-CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 4577777777 66666 443322 344 6788888887765555554 3567777776655554555544 4
Q ss_pred cccccCccccEEecccCcccccCCC-CCCCCCCCceEEEecCCCcCcccc-cccCC-CcccceeeccCCCCCccCC-CCC
Q 046441 235 SGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYGCERLEALPK-GLHNL-KSLQELRIGRGVELPSLEE-DGL 310 (465)
Q Consensus 235 ~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l-~~L~~L~l~~~~~~~~~~~-~~~ 310 (465)
..+..+++|++|++++| .++.++. ......++..+++.++..+..++. .+..+ ..++.|++++| .++.++. ...
T Consensus 98 ~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~ 175 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFN 175 (350)
T ss_dssp TSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSST
T ss_pred hhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhcc
Confidence 56677888888888877 5555554 333344677777777666666653 33443 35777888777 4455543 234
Q ss_pred CCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc
Q 046441 311 PTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS 390 (465)
Q Consensus 311 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 390 (465)
..+++++++.++..+....... +..+++|++|++++| .++.+|.. .+.+|++|.+.++++++.+|
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~~~---f~~l~~L~~LdLs~N--~l~~lp~~---------~~~~L~~L~~l~~~~l~~lP- 240 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPNDV---FHGASGPVILDISRT--RIHSLPSY---------GLENLKKLRARSTYNLKKLP- 240 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCTTT---TTTEECCSEEECTTS--CCCCCCSS---------SCTTCCEEECTTCTTCCCCC-
T ss_pred ccchhHHhhccCCcccCCCHHH---hccCcccchhhcCCC--CcCccChh---------hhccchHhhhccCCCcCcCC-
Confidence 4677888887766566555443 567788888888886 67777652 34578888888878888887
Q ss_pred cccCCCCcceEEecC
Q 046441 391 SIVDLQNLTELYLGD 405 (465)
Q Consensus 391 ~~~~l~~L~~L~l~~ 405 (465)
.+..+++|+.+++.+
T Consensus 241 ~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 TLEKLVALMEASLTY 255 (350)
T ss_dssp CTTTCCSCCEEECSC
T ss_pred CchhCcChhhCcCCC
Confidence 467788888888765
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=4.4e-15 Score=141.18 Aligned_cols=221 Identities=22% Similarity=0.206 Sum_probs=168.7
Q ss_pred CCCCccEEEecCCCChhhhhhh-hcCCCCCcEEecccccccccccc-ccccCccccEEecccCcccccCCC-CCCCCCCC
Q 046441 191 LPPSLKVLDIYGCPKLESIAER-LDNNTSLETISILCCENLKILPS-GLHNLRQLQEISIEKCGNLESFPE-GGLPCAKL 267 (465)
Q Consensus 191 ~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L 267 (465)
+|+++++|++++|. +..+|.. |.++++|++|++++|...+.++. .+.++++++++...++..+..++. .+..+++|
T Consensus 28 l~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 28 LPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp CCTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred cCCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 45789999999965 7788764 89999999999999987776654 567888888766665557888765 55668899
Q ss_pred ceEEEecCCCcCccc-ccccCCCcccceeeccCCCCCccCCC---CCCCccceeeecCCcccccccccccccCCCCCCcc
Q 046441 268 SKLRIYGCERLEALP-KGLHNLKSLQELRIGRGVELPSLEED---GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLR 343 (465)
Q Consensus 268 ~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~ 343 (465)
+.|++++|. +..++ ..+....++..+++.++..+..++.. +....++.|++++|. +...... .....+|+
T Consensus 107 ~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~----~f~~~~L~ 180 (350)
T 4ay9_X 107 QYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS----AFNGTQLD 180 (350)
T ss_dssp CEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT----SSTTEEEE
T ss_pred ccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh----hccccchh
Confidence 999999986 44444 34455667788888877677776642 334578999999998 4433333 23456899
Q ss_pred EEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCCCCCcccccE
Q 046441 344 CLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPEKGLPSSLLR 423 (465)
Q Consensus 344 ~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 423 (465)
++.+.++ ..++.++... +..+++|++|++++ ++++.+|. ..+.+|+.|.+.+++.++.+|....+++|+.
T Consensus 181 ~l~l~~~-n~l~~i~~~~------f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~ 250 (350)
T 4ay9_X 181 ELNLSDN-NNLEELPNDV------FHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALME 250 (350)
T ss_dssp EEECTTC-TTCCCCCTTT------TTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCE
T ss_pred HHhhccC-CcccCCCHHH------hccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhh
Confidence 9999874 4777787643 34678999999999 79999985 3478899999999999999998656799999
Q ss_pred EeecC
Q 046441 424 LYIDE 428 (465)
Q Consensus 424 L~l~~ 428 (465)
+++..
T Consensus 251 l~l~~ 255 (350)
T 4ay9_X 251 ASLTY 255 (350)
T ss_dssp EECSC
T ss_pred CcCCC
Confidence 99864
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=2e-15 Score=138.70 Aligned_cols=206 Identities=20% Similarity=0.250 Sum_probs=153.9
Q ss_pred hhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCceEEEecCCCcCccccc
Q 046441 206 LESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYGCERLEALPKG 284 (465)
Q Consensus 206 l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~ 284 (465)
+..+|..+. ++|++|++++|......+..+.++++|++|++++| .++.++. .+..+++|+.|++++|......+..
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 444555432 57999999997665544557888999999999998 6666655 5667889999999998744444567
Q ss_pred ccCCCcccceeeccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccc
Q 046441 285 LHNLKSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDK 362 (465)
Q Consensus 285 ~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~ 362 (465)
+..+++|++|++++|. +..++. .+.+++|++|++++|.......+.. +..+++|++|++++| .+..++...
T Consensus 96 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~---~~~l~~L~~L~Ls~N--~l~~~~~~~- 168 (276)
T 2z62_A 96 FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEY---FSNLTNLEHLDLSSN--KIQSIYCTD- 168 (276)
T ss_dssp TTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG---GGGCTTCCEEECCSS--CCCEECGGG-
T ss_pred hcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchh---hccCCCCCEEECCCC--CCCcCCHHH-
Confidence 8899999999999985 444433 4678899999999998433222222 678899999999998 666654321
Q ss_pred cccCCCCCccccc----eEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCCCCC--cccccEEeecC
Q 046441 363 RLGTALPLPACLA----SLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPEKGL--PSSLLRLYIDE 428 (465)
Q Consensus 363 ~~~~~~~~~~~L~----~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~ 428 (465)
+...++|+ +|++++ +.++.++.......+|++|++++ +.++.++...+ .++|++|++++
T Consensus 169 -----~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 169 -----LRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp -----GHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCS
T ss_pred -----hhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCC-CceeecCHhHhcccccccEEEccC
Confidence 11234555 899999 68998887555667999999999 56888887433 68999999994
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=6.9e-15 Score=135.83 Aligned_cols=87 Identities=20% Similarity=0.164 Sum_probs=49.5
Q ss_pred cccCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEEEecCCcCcceecCccCCCCcc
Q 046441 44 SLSLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAGVQLPRSLK 123 (465)
Q Consensus 44 ~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~ 123 (465)
+++++++++++++++ .++.+|. +..++++.|+++++. +..++.... ...++|+.|+++++ .++.++....+++|+
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~-~~~~~l~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPP-DLPKDTTILHLSENL-LYTFSLATL-MPYTRLTQLNLDRA-ELTKLQVDGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCS-CCCTTCCEEECTTSC-CSEEEGGGG-TTCTTCCEEECTTS-CCCEEECCSCCTTCC
T ss_pred ccccCCccEEECCCC-CCCcCCC-CCCCCCCEEEcCCCc-CCccCHHHh-hcCCCCCEEECCCC-ccCcccCCCCCCcCC
Confidence 456677777777765 5666653 224677777777754 444433211 34567777777775 455555444455555
Q ss_pred EEeeccccCcccc
Q 046441 124 RLHILLCNNIRTL 136 (465)
Q Consensus 124 ~L~l~~c~~l~~~ 136 (465)
.|+++++ .++.+
T Consensus 81 ~L~Ls~N-~l~~l 92 (290)
T 1p9a_G 81 TLDLSHN-QLQSL 92 (290)
T ss_dssp EEECCSS-CCSSC
T ss_pred EEECCCC-cCCcC
Confidence 5555553 34433
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=6.6e-16 Score=141.49 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=58.5
Q ss_pred cccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEEE
Q 046441 24 CRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILE 103 (465)
Q Consensus 24 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 103 (465)
.++..+++.++.. .... ....+++|++|.++++ .+..++.++.+++|++|+++++. +..++.. ..+++|++|+
T Consensus 19 ~~l~~l~l~~~~~-~~~~-~~~~l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n~-l~~~~~l---~~l~~L~~L~ 91 (272)
T 3rfs_A 19 AETIKANLKKKSV-TDAV-TQNELNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGNK-LHDISAL---KELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHTCSCT-TSEE-CHHHHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTSC-CCCCGGG---TTCTTCCEEE
T ss_pred HHHHHHHhcCccc-cccc-ccccccceeeeeeCCC-CcccccccccCCCCcEEECCCCC-CCCchhh---cCCCCCCEEE
Confidence 4455555655443 2222 2456778888888876 56667777778888888888764 5555422 4457777777
Q ss_pred ecCCcCcceecCc--cCCCCccEEeecc
Q 046441 104 IWICCSLTYIAGV--QLPRSLKRLHILL 129 (465)
Q Consensus 104 l~~~~~l~~~~~~--~~~~~L~~L~l~~ 129 (465)
+++| .++.++.. ..+++|+.|++++
T Consensus 92 L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 92 LTGN-QLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp CTTS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCC-ccCccChhHhcCCcCCCEEECCC
Confidence 7776 44444432 2234455555544
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=4.2e-15 Score=138.62 Aligned_cols=195 Identities=16% Similarity=0.200 Sum_probs=111.9
Q ss_pred cCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEEEecCCcCcceecCccCCCCccEE
Q 046441 46 SLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAGVQLPRSLKRL 125 (465)
Q Consensus 46 ~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L 125 (465)
.+++|++|++++| .+..++.+..+++|++|++++|. +..++.. ..+++|++|+++++ .++.++....+++|+.|
T Consensus 39 ~l~~L~~L~l~~~-~i~~l~~~~~l~~L~~L~L~~n~-i~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQ-ITDLAPL---KNLTKITELELSGN-PLKNVSAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGGG---TTCCSCCEEECCSC-CCSCCGGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCC-CccCchhhhccCCCCEEEccCCc-CCCChhH---ccCCCCCEEEccCC-cCCCchhhcCCCCCCEE
Confidence 3455555555554 34444444445555555555542 4444431 33455555555554 34444433444555556
Q ss_pred eeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCC
Q 046441 126 HILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPK 205 (465)
Q Consensus 126 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~ 205 (465)
+++++ .++.+ +. +.. +++|++|++++ +.++. ++. + ..+ ++|+.|++++|.
T Consensus 113 ~l~~n-~l~~~--~~-l~~-----------l~~L~~L~l~~-n~l~~-~~~------l-----~~l-~~L~~L~l~~n~- 162 (308)
T 1h6u_A 113 DLTST-QITDV--TP-LAG-----------LSNLQVLYLDL-NQITN-ISP------L-----AGL-TNLQYLSIGNAQ- 162 (308)
T ss_dssp ECTTS-CCCCC--GG-GTT-----------CTTCCEEECCS-SCCCC-CGG------G-----GGC-TTCCEEECCSSC-
T ss_pred ECCCC-CCCCc--hh-hcC-----------CCCCCEEECCC-CccCc-Ccc------c-----cCC-CCccEEEccCCc-
Confidence 55553 33333 22 222 56677777777 45544 221 1 333 678888888764
Q ss_pred hhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCccc
Q 046441 206 LESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALP 282 (465)
Q Consensus 206 l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 282 (465)
+..++. +..+++|+.|++++|.... ++. +..+++|++|++++| .+..++. ...+++|+.|++++|. +...|
T Consensus 163 l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 163 VSDLTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp CCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEEEE-EECCC
T ss_pred CCCChh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccCCe-eecCC
Confidence 555554 7788888888888865433 433 677888888888887 5555553 4567788888888875 34443
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=1.9e-15 Score=140.93 Aligned_cols=194 Identities=16% Similarity=0.206 Sum_probs=151.7
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRI 272 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 272 (465)
++|++|++.+|. +..++ .+..+++|++|++++|... .++. +..+++|++|++++| .++.++ ....+++|+.|++
T Consensus 41 ~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEEC
Confidence 789999999965 55565 5888999999999997544 4555 888999999999998 566665 4556789999999
Q ss_pred ecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCC
Q 046441 273 YGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDD 352 (465)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 352 (465)
++|. +..++. +..+++|++|++++| .+..++..+.+++|++|++++|. +..... +..+++|++|++++|
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-----l~~l~~L~~L~l~~n-- 183 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQ-VSDLTP-----LANLSKLTTLKADDN-- 183 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS--
T ss_pred CCCC-CCCchh-hcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCc-CCCChh-----hcCCCCCCEEECCCC--
Confidence 9986 555654 889999999999998 45555556677899999999997 333332 567899999999997
Q ss_pred cccccccccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCC
Q 046441 353 DMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPE 414 (465)
Q Consensus 353 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 414 (465)
.+..++.- ..+++|++|++++ ++++.++. +..+++|++|++++ +.++..|.
T Consensus 184 ~l~~~~~l--------~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~l~~-N~i~~~~~ 234 (308)
T 1h6u_A 184 KISDISPL--------ASLPNLIEVHLKN-NQISDVSP-LANTSNLFIVTLTN-QTITNQPV 234 (308)
T ss_dssp CCCCCGGG--------GGCTTCCEEECTT-SCCCBCGG-GTTCTTCCEEEEEE-EEEECCCE
T ss_pred ccCcChhh--------cCCCCCCEEEccC-CccCcccc-ccCCCCCCEEEccC-CeeecCCe
Confidence 66666542 2567999999999 58888874 78899999999998 45666554
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=3.8e-16 Score=147.81 Aligned_cols=224 Identities=16% Similarity=0.188 Sum_probs=112.6
Q ss_pred cccceeecccCCCCcccccccccC--CCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccc--cccccccCCCCCc
Q 046441 24 CRLEYLRLRYCEGLVKLPQSSLSL--SSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKS--LPEAWMCDTNSSL 99 (465)
Q Consensus 24 ~~L~~L~l~~~~~l~~l~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~L 99 (465)
..++.++++++.. . +..+..+ ++++.|+++++..-...+....+++|++|++++|. +.. ++.. ...+++|
T Consensus 47 ~~~~~l~l~~~~~-~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~--~~~~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKNL-H--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGI--LSQCSKL 120 (336)
T ss_dssp TTSSEEECTTCBC-C--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHH--HTTBCCC
T ss_pred hhheeeccccccC-C--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHH--HhhCCCC
Confidence 3467777777654 2 3344455 77888888776333333445557788888887765 432 2222 1345777
Q ss_pred cEEEecCCcCcce-ecCc-cCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCC
Q 046441 100 EILEIWICCSLTY-IAGV-QLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKN 177 (465)
Q Consensus 100 ~~L~l~~~~~l~~-~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 177 (465)
++|++++|. +.. .+.. ..+++|+.|++++|..++...++..+.. +++|++|++++|..++. .
T Consensus 121 ~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~-----------~~~L~~L~l~~~~~l~~----~ 184 (336)
T 2ast_B 121 QNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-----------CSRLDELNLSWCFDFTE----K 184 (336)
T ss_dssp SEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-----------CTTCCEEECCCCTTCCH----H
T ss_pred CEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-----------CCCCCEEcCCCCCCcCh----H
Confidence 777777763 332 1111 3355666666666644442111222222 45566666666434433 1
Q ss_pred CcchhhhhcccCCCCC-CccEEEecCCC-Ch--hhhhhhhcCCCCCcEEeccccccc-cccccccccCccccEEecccCc
Q 046441 178 ELPATLESLEVGNLPP-SLKVLDIYGCP-KL--ESIAERLDNNTSLETISILCCENL-KILPSGLHNLRQLQEISIEKCG 252 (465)
Q Consensus 178 ~~~~~~~~l~~~~~~~-~L~~L~l~~~~-~l--~~~~~~~~~l~~L~~L~l~~~~~~-~~l~~~~~~~~~L~~L~l~~~~ 252 (465)
.++..+ ..+ + +|++|++++|. .+ ..++..+..+++|++|++++|..+ ...+..+..+++|++|++++|.
T Consensus 185 ~~~~~~-----~~l-~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 185 HVQVAV-----AHV-SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHHH-----HHS-CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HHHHHH-----Hhc-ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 112222 222 3 56666666653 12 334444555666666666665532 2334445555666666666553
Q ss_pred ccccC-CCCCCCCCCCceEEEecC
Q 046441 253 NLESF-PEGGLPCAKLSKLRIYGC 275 (465)
Q Consensus 253 ~l~~l-~~~~~~~~~L~~L~l~~~ 275 (465)
.+... ......+++|+.|++++|
T Consensus 259 ~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 259 DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCHHHHHHHhcCCCCCEEeccCc
Confidence 22110 001223445555555554
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=142.16 Aligned_cols=225 Identities=12% Similarity=0.041 Sum_probs=143.2
Q ss_pred CccEEEecCCCChh----hhhhhhcCCCCCcEEecccccccccccccc--ccCccccEEecccCcccccCC----CCCCC
Q 046441 194 SLKVLDIYGCPKLE----SIAERLDNNTSLETISILCCENLKILPSGL--HNLRQLQEISIEKCGNLESFP----EGGLP 263 (465)
Q Consensus 194 ~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~l~~l~----~~~~~ 263 (465)
.++.+.+.++.... .+.. +..+++|++|++++|...+..|..+ ..+++|++|++++|..-...+ .....
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 46677777654321 1111 2334668888888877666666666 778888888888874332222 11224
Q ss_pred CCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCc--cC-C--CCCCCccceeeecCCcccccccccccccCCC
Q 046441 264 CAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPS--LE-E--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHR 338 (465)
Q Consensus 264 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~-~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 338 (465)
+++|+.|++++|......+..++.+++|++|++++|..... ++ . .+.+++|++|++++|.. +.........+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhc
Confidence 66888888888775444456777888888888888753321 11 1 24567888888888873 3222110000346
Q ss_pred CCCccEEEecCCCCccccc-ccccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCCCCC
Q 046441 339 FSSLRCLAISGCDDDMVSF-PLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPEKGL 417 (465)
Q Consensus 339 ~~~L~~L~l~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 417 (465)
+++|++|++++| .+... |.... ....+++|++|++++ ++++.+|..+. ++|++|++++ +.++.+|....
T Consensus 223 l~~L~~L~Ls~N--~l~~~~p~~~~----~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~~~~ 292 (310)
T 4glp_A 223 GVQPHSLDLSHN--SLRATVNPSAP----RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQPDE 292 (310)
T ss_dssp TCCCSSEECTTS--CCCCCCCSCCS----SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS-CCCCSCCCTTS
T ss_pred CCCCCEEECCCC--CCCccchhhHH----hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC-CcCCCCchhhh
Confidence 688888888887 55544 33221 111236888888888 68888876553 7888999888 57777766445
Q ss_pred cccccEEeecCCc
Q 046441 418 PSSLLRLYIDECP 430 (465)
Q Consensus 418 ~~~L~~L~l~~c~ 430 (465)
+++|++|++++++
T Consensus 293 l~~L~~L~L~~N~ 305 (310)
T 4glp_A 293 LPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSCEECSSTT
T ss_pred CCCccEEECcCCC
Confidence 6888888888764
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=8.3e-16 Score=143.69 Aligned_cols=202 Identities=17% Similarity=0.103 Sum_probs=141.6
Q ss_pred CCccEEEecCCCChhhhhhhh--cCCCCCcEEeccccccccccc----cccccCccccEEecccCcccccCC-CCCCCCC
Q 046441 193 PSLKVLDIYGCPKLESIAERL--DNNTSLETISILCCENLKILP----SGLHNLRQLQEISIEKCGNLESFP-EGGLPCA 265 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~--~~l~~L~~L~l~~~~~~~~l~----~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~ 265 (465)
++|++|++++|...+..|..+ ..+++|++|++++|......+ ..+..+++|++|++++|. +..++ ..+..++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCC
Confidence 568888988876555556655 788889999998877654333 233467889999998884 45444 4666778
Q ss_pred CCceEEEecCCCcCc--cc--ccccCCCcccceeeccCCCCCccCC-----CCCCCccceeeecCCcccccccccccccC
Q 046441 266 KLSKLRIYGCERLEA--LP--KGLHNLKSLQELRIGRGVELPSLEE-----DGLPTNLHSLEIDGNMEIWKSTIEWGRGF 336 (465)
Q Consensus 266 ~L~~L~l~~~~~~~~--~~--~~~~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 336 (465)
+|++|++++|..... ++ ..++.+++|++|++++|. ++.++. .+.+++|++|++++|......+..+. .+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~ 247 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP-RC 247 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS-SC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH-hc
Confidence 899999998864331 22 223678899999999884 444332 13457899999999883332222211 12
Q ss_pred CCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccccccCCCCcceEEecCCCCCCc
Q 046441 337 HRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKY 411 (465)
Q Consensus 337 ~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 411 (465)
..+++|++|++++| .++.+|... +++|++|++++ ++++.+|. +..+++|++|++++ +.+++
T Consensus 248 ~~~~~L~~L~Ls~N--~l~~lp~~~---------~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~-N~l~~ 308 (310)
T 4glp_A 248 MWSSALNSLNLSFA--GLEQVPKGL---------PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDG-NPFLV 308 (310)
T ss_dssp CCCTTCCCEECCSS--CCCSCCSCC---------CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSS-TTTSC
T ss_pred cCcCcCCEEECCCC--CCCchhhhh---------cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcC-CCCCC
Confidence 33479999999998 777776633 36999999999 69998875 67889999999999 45543
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=1.6e-14 Score=132.07 Aligned_cols=195 Identities=21% Similarity=0.275 Sum_probs=139.8
Q ss_pred CCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEE
Q 046441 120 RSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLD 199 (465)
Q Consensus 120 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~ 199 (465)
.+.+.+++++ .+++.+ | ..+.+++++|++++ +.++. ++...+ ..+ ++|++|+
T Consensus 16 ~~~~~l~~~~-~~l~~i--p-------------~~~~~~l~~L~l~~-n~l~~-~~~~~~---------~~l-~~L~~L~ 67 (270)
T 2o6q_A 16 NNKNSVDCSS-KKLTAI--P-------------SNIPADTKKLDLQS-NKLSS-LPSKAF---------HRL-TKLRLLY 67 (270)
T ss_dssp TTTTEEECTT-SCCSSC--C-------------SCCCTTCSEEECCS-SCCSC-CCTTSS---------SSC-TTCCEEE
T ss_pred CCCCEEEccC-CCCCcc--C-------------CCCCCCCCEEECcC-CCCCe-eCHHHh---------cCC-CCCCEEE
Confidence 4566677665 344443 2 23345799999998 56766 443222 455 7999999
Q ss_pred ecCCCChhhhhhh-hcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCceEEEecCCC
Q 046441 200 IYGCPKLESIAER-LDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYGCER 277 (465)
Q Consensus 200 l~~~~~l~~~~~~-~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~ 277 (465)
+++|. +..++.. +..+++|++|++++|......+..+..+++|++|++++| .++.++. .+..+++|+.|++++|.
T Consensus 68 l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~- 144 (270)
T 2o6q_A 68 LNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNE- 144 (270)
T ss_dssp CCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCc-
Confidence 99965 5566654 588999999999997755544456788999999999998 5666665 45678899999999986
Q ss_pred cCcccc-cccCCCcccceeeccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCC
Q 046441 278 LEALPK-GLHNLKSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGC 350 (465)
Q Consensus 278 ~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 350 (465)
+..++. .++.+++|++|++++|. +..++. ...+++|++|++++|. +....... +..+++|+.|++++|
T Consensus 145 l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 145 LQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGA---FDSLEKLKMLQLQEN 215 (270)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT---TTTCTTCCEEECCSS
T ss_pred CCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCc-CCcCCHHH---hccccCCCEEEecCC
Confidence 555554 47889999999999984 444443 3456788888888886 44333332 567788888888876
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=1.9e-16 Score=149.82 Aligned_cols=131 Identities=18% Similarity=0.271 Sum_probs=58.8
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccc--cccccccCccccEEecccCccccc--CCCCCCCCC-CC
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKI--LPSGLHNLRQLQEISIEKCGNLES--FPEGGLPCA-KL 267 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~-~L 267 (465)
++|++|++++|...+..+..++.+++|++|++++|..+.. ++..+..+++|++|++++|..++. ++.....++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 4555555555543334444455555555555555533331 333344455555555555533332 222223344 55
Q ss_pred ceEEEecCC-Cc--CcccccccCCCcccceeeccCCCCCc--cCCCCCCCccceeeecCCc
Q 046441 268 SKLRIYGCE-RL--EALPKGLHNLKSLQELRIGRGVELPS--LEEDGLPTNLHSLEIDGNM 323 (465)
Q Consensus 268 ~~L~l~~~~-~~--~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~ 323 (465)
++|++++|. .+ ..++..+..+++|++|++++|..+.. +.....+++|++|++++|.
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 555555543 12 22333444455555555555532221 1122333445555555443
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=3.7e-14 Score=129.78 Aligned_cols=123 Identities=21% Similarity=0.183 Sum_probs=62.4
Q ss_pred CCccEEEecCCCChhhhhh-hhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCceE
Q 046441 193 PSLKVLDIYGCPKLESIAE-RLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKL 270 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L 270 (465)
++|++|++++|. +..++. .++.+++|++|++++|......+..+..+++|++|++++| .++.++. .+..+++|+.|
T Consensus 109 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 109 TNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEE
Confidence 455555555544 323222 2455666666666665433322333455666666666665 3444443 23445566666
Q ss_pred EEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCc
Q 046441 271 RIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNM 323 (465)
Q Consensus 271 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 323 (465)
++++|......+..+..+++|++|++++|.. .+.+++++.+++..|.
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~------~~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW------DCTCPGIRYLSEWINK 233 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCB------CCCTTTTHHHHHHHHH
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCc------cccCcHHHHHHHHHHh
Confidence 6666543332233345566666666666532 1234455555555544
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=3.6e-16 Score=150.96 Aligned_cols=208 Identities=14% Similarity=0.115 Sum_probs=124.1
Q ss_pred CCccEEEecCCC--Ch-hhhhh-------hhcCCCCCcEEecccccccc----ccccccccCccccEEecccCccccc--
Q 046441 193 PSLKVLDIYGCP--KL-ESIAE-------RLDNNTSLETISILCCENLK----ILPSGLHNLRQLQEISIEKCGNLES-- 256 (465)
Q Consensus 193 ~~L~~L~l~~~~--~l-~~~~~-------~~~~l~~L~~L~l~~~~~~~----~l~~~~~~~~~L~~L~l~~~~~l~~-- 256 (465)
++|++|++++|. .+ ..+|. .+..+++|++|++++|.... .++..+..+++|++|++++|. ++.
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~ 138 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQA 138 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHH
Confidence 567777776652 11 12232 23567777777777765444 245556667777777777763 321
Q ss_pred ---CCCCCCCC---------CCCceEEEecCCCc-Cccc---ccccCCCcccceeeccCCCCC------ccC-CCCCCCc
Q 046441 257 ---FPEGGLPC---------AKLSKLRIYGCERL-EALP---KGLHNLKSLQELRIGRGVELP------SLE-EDGLPTN 313 (465)
Q Consensus 257 ---l~~~~~~~---------~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~L~l~~~~~~~------~~~-~~~~~~~ 313 (465)
++.....+ ++|++|++++|... ..++ ..+..+++|++|++++|. +. ..+ ....+++
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQE 217 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTT
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCC
Confidence 11111111 57888888887533 2333 355677888888888873 33 122 3355678
Q ss_pred cceeeecCCcccccccccccccCCCCCCccEEEecCCCCccccc-----ccccccccCCCCCccccceEeccCCCCCcc-
Q 046441 314 LHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSF-----PLEDKRLGTALPLPACLASLMIGNFPNLER- 387 (465)
Q Consensus 314 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~-----~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~- 387 (465)
|++|++++|..........+..+..+++|++|++++| .+... +.... ....++|++|++++ +.++.
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~-----~~~~~~L~~L~L~~-n~i~~~ 289 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC--LLSARGAAAVVDAFS-----KLENIGLQTLRLQY-NEIELD 289 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC--CCCHHHHHHHHHHHH-----TCSSCCCCEEECCS-SCCBHH
T ss_pred ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC--CCchhhHHHHHHHHh-----hccCCCeEEEECcC-CcCCHH
Confidence 8888888887421111111111567889999999987 44332 22110 01257899999998 47776
Q ss_pred ----ccccc-cCCCCcceEEecCCCCCCc
Q 046441 388 ----LSSSI-VDLQNLTELYLGDCPKLKY 411 (465)
Q Consensus 388 ----l~~~~-~~l~~L~~L~l~~c~~l~~ 411 (465)
++..+ .++++|++|++++| .++.
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N-~l~~ 317 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGN-RFSE 317 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTS-BSCT
T ss_pred HHHHHHHHHHhcCCCceEEEccCC-cCCc
Confidence 66655 56899999999985 4544
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=2.5e-13 Score=122.66 Aligned_cols=171 Identities=20% Similarity=0.266 Sum_probs=121.0
Q ss_pred cCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEecccccccccccccc
Q 046441 158 LLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGL 237 (465)
Q Consensus 158 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~ 237 (465)
..+++++++ ..++. ++. .+|++++.|++++|......+..+..+++|++|++++|......+..+
T Consensus 15 ~~~~l~~~~-~~l~~-~p~-------------~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 79 (251)
T 3m19_A 15 GKKEVDCQG-KSLDS-VPS-------------GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF 79 (251)
T ss_dssp GGTEEECTT-CCCSS-CCS-------------CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred CCeEEecCC-CCccc-cCC-------------CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh
Confidence 456677776 55555 442 234789999999876434344468889999999999976665556667
Q ss_pred ccCccccEEecccCcccccCCC-CCCCCCCCceEEEecCCCcCcccc-cccCCCcccceeeccCCCCCccCC--CCCCCc
Q 046441 238 HNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYGCERLEALPK-GLHNLKSLQELRIGRGVELPSLEE--DGLPTN 313 (465)
Q Consensus 238 ~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~ 313 (465)
..+++|++|++++| .++.++. .+..+++|+.|++++|. +..++. .+..+++|++|++++| .+..++. .+.+++
T Consensus 80 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 80 DDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred ccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcC
Confidence 88899999999988 5666654 45567889999999885 445543 4678888999999888 4455543 356678
Q ss_pred cceeeecCCcccccccccccccCCCCCCccEEEecCC
Q 046441 314 LHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGC 350 (465)
Q Consensus 314 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 350 (465)
|++|++++|. +....... +..+++|++|++++|
T Consensus 157 L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 157 LQTLSLSTNQ-LQSVPHGA---FDRLGKLQTITLFGN 189 (251)
T ss_dssp CCEEECCSSC-CSCCCTTT---TTTCTTCCEEECCSC
T ss_pred CCEEECCCCc-CCccCHHH---HhCCCCCCEEEeeCC
Confidence 8888888887 33333322 567788888888876
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=5.6e-13 Score=120.36 Aligned_cols=170 Identities=18% Similarity=0.212 Sum_probs=91.7
Q ss_pred CCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCceEEEecCCCcCcccccccCCCcccceee
Q 046441 218 SLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRI 296 (465)
Q Consensus 218 ~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 296 (465)
+.+.++.+++ .+..+|..+. ++++.|++++| .+..++. .+..+++|++|++++|......+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCCC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCC-CccccCCCCC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4566666653 3344555444 56777777776 4444433 4555667777777776543333444566677777777
Q ss_pred ccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCcccc
Q 046441 297 GRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACL 374 (465)
Q Consensus 297 ~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L 374 (465)
++|. +..++. ...+++|++|++++|. +....... +..+++|++|++++| .+..++... +..+++|
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L 157 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGV---FDRLTKLKELRLNTN--QLQSIPAGA------FDKLTNL 157 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS--CCCCCCTTT------TTTCTTC
T ss_pred CCCc-ccccChhHhcccCCCCEEEcCCCc-CCCcChhH---hccCCcccEEECcCC--cCCccCHHH------cCcCcCC
Confidence 7663 333332 2345566666666664 33222222 345566666666665 444444311 1234456
Q ss_pred ceEeccCCCCCccccc-cccCCCCcceEEecC
Q 046441 375 ASLMIGNFPNLERLSS-SIVDLQNLTELYLGD 405 (465)
Q Consensus 375 ~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~ 405 (465)
++|++++ ++++.++. .+..+++|++|++++
T Consensus 158 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 158 QTLSLST-NQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCC-CcCCccCHHHHhCCCCCCEEEeeC
Confidence 6666665 45555544 445555666666655
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=1.4e-13 Score=127.18 Aligned_cols=176 Identities=18% Similarity=0.188 Sum_probs=136.7
Q ss_pred hcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCccc
Q 046441 213 LDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQ 292 (465)
Q Consensus 213 ~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 292 (465)
+..+++|+.|++++|.. ..++ .+..+++|++|++++| .++.++. ...+++|+.|++++|. +..++ .+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i-~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCC
T ss_pred hhhcCcccEEEccCCCc-ccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCC
Confidence 34678899999999754 3344 4788999999999998 6666665 6677899999999986 55665 488999999
Q ss_pred ceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCcc
Q 046441 293 ELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPA 372 (465)
Q Consensus 293 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~ 372 (465)
+|++++| .+..++....+++|++|++++|. +... .. +..+++|++|++++| .+..++. . ..++
T Consensus 116 ~L~L~~n-~i~~~~~l~~l~~L~~L~l~~n~-l~~~-~~----l~~l~~L~~L~L~~N--~l~~~~~-l-------~~l~ 178 (291)
T 1h6t_A 116 SLSLEHN-GISDINGLVHLPQLESLYLGNNK-ITDI-TV----LSRLTKLDTLSLEDN--QISDIVP-L-------AGLT 178 (291)
T ss_dssp EEECTTS-CCCCCGGGGGCTTCCEEECCSSC-CCCC-GG----GGGCTTCSEEECCSS--CCCCCGG-G-------TTCT
T ss_pred EEECCCC-cCCCChhhcCCCCCCEEEccCCc-CCcc-hh----hccCCCCCEEEccCC--ccccchh-h-------cCCC
Confidence 9999998 45556666778899999999997 3333 21 678899999999997 6666554 2 3667
Q ss_pred ccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCC
Q 046441 373 CLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPE 414 (465)
Q Consensus 373 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 414 (465)
+|++|++++ +.++.++. +..+++|+.|+++++ .+...+.
T Consensus 179 ~L~~L~L~~-N~i~~l~~-l~~l~~L~~L~l~~n-~i~~~~~ 217 (291)
T 1h6t_A 179 KLQNLYLSK-NHISDLRA-LAGLKNLDVLELFSQ-ECLNKPI 217 (291)
T ss_dssp TCCEEECCS-SCCCBCGG-GTTCTTCSEEEEEEE-EEECCCE
T ss_pred ccCEEECCC-CcCCCChh-hccCCCCCEEECcCC-cccCCcc
Confidence 999999999 58888874 788999999999984 5555444
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=2.7e-14 Score=136.43 Aligned_cols=134 Identities=13% Similarity=0.055 Sum_probs=62.8
Q ss_pred cCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhh----hhhcCC-CCCcEEeccccccccc
Q 046441 158 LLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIA----ERLDNN-TSLETISILCCENLKI 232 (465)
Q Consensus 158 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~l-~~L~~L~l~~~~~~~~ 232 (465)
+|++|++++ +.+.+ .....++..+ ...+++|++|++++|..-...+ ..+..+ ++|++|++++|.....
T Consensus 139 ~L~~L~Ls~-N~l~~-~~~~~l~~~l-----~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 139 SITSLNLRG-NDLGI-KSSDELIQIL-----AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp TCCEEECTT-SCGGG-SCHHHHHHHH-----HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred ceeEEEccC-CcCCH-HHHHHHHHHH-----hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 566666666 34443 2222222222 2222366777776654222222 233444 3677777776543331
Q ss_pred ----ccccccc-CccccEEecccCcccccCC-----CCCCCCCCCceEEEecCCC-------cCcccccccCCCccccee
Q 046441 233 ----LPSGLHN-LRQLQEISIEKCGNLESFP-----EGGLPCAKLSKLRIYGCER-------LEALPKGLHNLKSLQELR 295 (465)
Q Consensus 233 ----l~~~~~~-~~~L~~L~l~~~~~l~~l~-----~~~~~~~~L~~L~l~~~~~-------~~~~~~~~~~l~~L~~L~ 295 (465)
++..+.. .++|++|++++| .++..+ .....+++|+.|++++|.. ...++..+..+++|+.|+
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~Ld 290 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEEC
T ss_pred HHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEe
Confidence 3333433 346777777766 333321 1223445666666666541 112223344455555555
Q ss_pred eccC
Q 046441 296 IGRG 299 (465)
Q Consensus 296 l~~~ 299 (465)
+++|
T Consensus 291 L~~N 294 (362)
T 3goz_A 291 KNGK 294 (362)
T ss_dssp TTSC
T ss_pred cCCC
Confidence 5555
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=4.7e-15 Score=143.07 Aligned_cols=226 Identities=14% Similarity=0.090 Sum_probs=155.0
Q ss_pred CCccEEEecCCCChhh----hhhhhcCCCCCcEEeccccccc---cccccc-------cccCccccEEecccCccccc--
Q 046441 193 PSLKVLDIYGCPKLES----IAERLDNNTSLETISILCCENL---KILPSG-------LHNLRQLQEISIEKCGNLES-- 256 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~----~~~~~~~l~~L~~L~l~~~~~~---~~l~~~-------~~~~~~L~~L~l~~~~~l~~-- 256 (465)
++|++|++++|..-.. ++..+..+++|++|++++|..- ..+|.. +..+++|++|++++|. ++.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~ 110 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTA 110 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTT
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CCHHH
Confidence 6799999999763333 3445778999999999987322 123333 4678999999999984 443
Q ss_pred ---CCCCCCCCCCCceEEEecCCCcC----cccccccCC---------CcccceeeccCCCC-CccC----CCCCCCccc
Q 046441 257 ---FPEGGLPCAKLSKLRIYGCERLE----ALPKGLHNL---------KSLQELRIGRGVEL-PSLE----EDGLPTNLH 315 (465)
Q Consensus 257 ---l~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l---------~~L~~L~l~~~~~~-~~~~----~~~~~~~L~ 315 (465)
++..+..+++|++|++++|.... .++..+..+ ++|++|++++|... ..++ ....+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 44445567899999999987432 223333344 89999999998532 2222 123567999
Q ss_pred eeeecCCcccccccccccc-cCCCCCCccEEEecCCCCcc-----cccccccccccCCCCCccccceEeccCCCCCccc-
Q 046441 316 SLEIDGNMEIWKSTIEWGR-GFHRFSSLRCLAISGCDDDM-----VSFPLEDKRLGTALPLPACLASLMIGNFPNLERL- 388 (465)
Q Consensus 316 ~L~l~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~l-----~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l- 388 (465)
+|++++|............ .+..+++|++|++++| .+ ..++... ...++|++|++++| .++..
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l~~~l-------~~~~~L~~L~L~~n-~i~~~~ 260 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALAIAL-------KSWPNLRELGLNDC-LLSARG 260 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHHHHG-------GGCTTCCEEECTTC-CCCHHH
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHHHHHH-------ccCCCcCEEECCCC-CCchhh
Confidence 9999999743221111100 1678899999999998 44 3344322 35679999999995 67754
Q ss_pred ----cccc--cCCCCcceEEecCCCCCCc-----CCCCC--CcccccEEeecCCc
Q 046441 389 ----SSSI--VDLQNLTELYLGDCPKLKY-----FPEKG--LPSSLLRLYIDECP 430 (465)
Q Consensus 389 ----~~~~--~~l~~L~~L~l~~c~~l~~-----l~~~~--~~~~L~~L~l~~c~ 430 (465)
+..+ ..+++|++|++++| .++. ++... .+++|++|++++|+
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 4444 34899999999995 5766 55532 25899999999984
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=2.7e-13 Score=125.17 Aligned_cols=171 Identities=15% Similarity=0.161 Sum_probs=133.8
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRI 272 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 272 (465)
++|+.|++.+|. +..++ .+..+++|++|++++|.... ++. +..+++|++|++++| .++.++. ...+++|+.|++
T Consensus 46 ~~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEEC
T ss_pred CcccEEEccCCC-cccCh-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEEC
Confidence 789999999965 55554 48889999999999976544 444 888999999999998 5666654 566789999999
Q ss_pred ecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCC
Q 046441 273 YGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDD 352 (465)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 352 (465)
++|. +..++ .+..+++|++|++++| .+..++....+++|++|++++|. +..... +..+++|++|++++|
T Consensus 120 ~~n~-i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~-l~~~~~-----l~~l~~L~~L~L~~N-- 188 (291)
T 1h6t_A 120 EHNG-ISDIN-GLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQ-ISDIVP-----LAGLTKLQNLYLSKN-- 188 (291)
T ss_dssp TTSC-CCCCG-GGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS--
T ss_pred CCCc-CCCCh-hhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCCc-cccchh-----hcCCCccCEEECCCC--
Confidence 9986 55554 5888999999999998 45555656778999999999997 443332 568899999999998
Q ss_pred cccccccccccccCCCCCccccceEeccCCCCCcccc
Q 046441 353 DMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLS 389 (465)
Q Consensus 353 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 389 (465)
.+..++.- ..+++|+.|++++ +.+...+
T Consensus 189 ~i~~l~~l--------~~l~~L~~L~l~~-n~i~~~~ 216 (291)
T 1h6t_A 189 HISDLRAL--------AGLKNLDVLELFS-QECLNKP 216 (291)
T ss_dssp CCCBCGGG--------TTCTTCSEEEEEE-EEEECCC
T ss_pred cCCCChhh--------ccCCCCCEEECcC-CcccCCc
Confidence 66666542 3667999999998 4666555
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=3e-13 Score=117.34 Aligned_cols=148 Identities=12% Similarity=0.125 Sum_probs=93.9
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRI 272 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 272 (465)
++|+.|++++|. +..++ ++..+++|++|++++| .+..+ ..+..+++|++|++++|..-...+..+..+++|+.|++
T Consensus 44 ~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 567777777754 44555 5677777777777776 33323 35666777777777776332334555566677777777
Q ss_pred ecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCC
Q 046441 273 YGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGC 350 (465)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 350 (465)
++|......+..++.+++|++|++++|..+..++....+++|++|++++|. +.... . +..+++|++|+++++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~---~--l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR---G--IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT---T--GGGCSSCCEEEECBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH---H--hccCCCCCEEEeeCc
Confidence 777644445566777777888887777545555555556667777777665 22222 1 456677777777765
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=1.8e-14 Score=137.75 Aligned_cols=228 Identities=16% Similarity=0.104 Sum_probs=146.2
Q ss_pred CCCCCccEEEecCCCChhhhh-----hhhcCCC-CCcEEeccccccccccccccccC-----ccccEEecccCcccccCC
Q 046441 190 NLPPSLKVLDIYGCPKLESIA-----ERLDNNT-SLETISILCCENLKILPSGLHNL-----RQLQEISIEKCGNLESFP 258 (465)
Q Consensus 190 ~~~~~L~~L~l~~~~~l~~~~-----~~~~~l~-~L~~L~l~~~~~~~~l~~~~~~~-----~~L~~L~l~~~~~l~~l~ 258 (465)
..+++|++|++++|. +...+ ..+..++ +|++|++++|......+..+..+ ++|++|++++|. ++...
T Consensus 19 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~ 96 (362)
T 3goz_A 19 SIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKS 96 (362)
T ss_dssp TSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred hCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHH
Confidence 344679999999976 54433 5678888 89999999986655444445443 899999999984 54433
Q ss_pred C-----CCCCC-CCCceEEEecCCCcCccccc----ccC-CCcccceeeccCCCCCccC-----C-C-CCCCccceeeec
Q 046441 259 E-----GGLPC-AKLSKLRIYGCERLEALPKG----LHN-LKSLQELRIGRGVELPSLE-----E-D-GLPTNLHSLEID 320 (465)
Q Consensus 259 ~-----~~~~~-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~~-----~-~-~~~~~L~~L~l~ 320 (465)
. ....+ ++|++|++++|......+.. +.. .++|++|++++|. +.... . . ...++|++|+++
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeec
Confidence 2 12223 68999999998743322222 334 3689999999984 33211 1 1 123489999999
Q ss_pred CCcccccccccccccCCCC-CCccEEEecCCCCcccc-----cccccccccCCCCCccccceEeccCCCCCccccc----
Q 046441 321 GNMEIWKSTIEWGRGFHRF-SSLRCLAISGCDDDMVS-----FPLEDKRLGTALPLPACLASLMIGNFPNLERLSS---- 390 (465)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~l~~-----~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---- 390 (465)
+|.............+..+ ++|++|++++| .+.. ++.... ..+++|++|++++ +.++..+.
T Consensus 176 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~l~~~l~------~~~~~L~~L~Ls~-N~l~~~~~~~l~ 246 (362)
T 3goz_A 176 GNNLASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAELAYIFS------SIPNHVVSLNLCL-NCLHGPSLENLK 246 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHHH------HSCTTCCEEECCS-SCCCCCCHHHHH
T ss_pred CCCCchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHHHHHHHh------cCCCCceEEECcC-CCCCcHHHHHHH
Confidence 9974333322221114455 49999999997 4444 332221 1245899999999 57776543
Q ss_pred -cccCCCCcceEEecCCCCCCcCCC---------CCCcccccEEeecCCc
Q 046441 391 -SIVDLQNLTELYLGDCPKLKYFPE---------KGLPSSLLRLYIDECP 430 (465)
Q Consensus 391 -~~~~l~~L~~L~l~~c~~l~~l~~---------~~~~~~L~~L~l~~c~ 430 (465)
.+..+++|++|++++| .+..++. ....++|++|++++++
T Consensus 247 ~~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HTTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 4467789999999985 3222221 1125778899998874
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=3.7e-13 Score=116.80 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=116.0
Q ss_pred cccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEecccccccccccc
Q 046441 156 SSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPS 235 (465)
Q Consensus 156 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~ 235 (465)
+++|++|++++ +.++. ++. + ..+ ++|++|++++| .+..++ .+..+++|++|++++|......+.
T Consensus 43 l~~L~~L~l~~-n~i~~-l~~------l-----~~l-~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~ 106 (197)
T 4ezg_A 43 MNSLTYITLAN-INVTD-LTG------I-----EYA-HNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIP 106 (197)
T ss_dssp HHTCCEEEEES-SCCSC-CTT------G-----GGC-TTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSC
T ss_pred cCCccEEeccC-CCccC-hHH------H-----hcC-CCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccCh
Confidence 67788999988 45554 331 2 333 78999999998 455543 688899999999999877666778
Q ss_pred ccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccc
Q 046441 236 GLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLH 315 (465)
Q Consensus 236 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 315 (465)
.+..+++|++|++++|......+..+..+++|++|++++|..++.++ .+..+++|++|++++| .+..++....+++|+
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~l~~l~~L~ 184 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRGIEDFPKLN 184 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTTGGGCSSCC
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHHhccCCCCC
Confidence 88899999999999984333345555667899999999987677776 6888999999999998 455566666788999
Q ss_pred eeeecCCc
Q 046441 316 SLEIDGNM 323 (465)
Q Consensus 316 ~L~l~~~~ 323 (465)
+|++++|.
T Consensus 185 ~L~l~~N~ 192 (197)
T 4ezg_A 185 QLYAFSQT 192 (197)
T ss_dssp EEEECBC-
T ss_pred EEEeeCcc
Confidence 99999987
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=2.2e-12 Score=129.34 Aligned_cols=142 Identities=20% Similarity=0.204 Sum_probs=61.0
Q ss_pred CccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeee
Q 046441 240 LRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEI 319 (465)
Q Consensus 240 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 319 (465)
+++|++|++++| .++.+|. +.. +|+.|++++|. ++.+|. .+++|+.|++++|. +..++. .+++|++|++
T Consensus 99 l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~L 167 (571)
T 3cvr_A 99 PASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE--LPTSLEVLSV 167 (571)
T ss_dssp CTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEEC
T ss_pred cCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC--cCCCcCEEEC
Confidence 344444444444 3333443 211 44445444443 233333 34445555555442 233332 3345555555
Q ss_pred cCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccccccCCCCcc
Q 046441 320 DGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSSSIVDLQNLT 399 (465)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~ 399 (465)
++|. +..... + . ++|+.|++++| .+..+|. ... .....+..|+.|++++ ++++.+|..+..+++|+
T Consensus 168 s~N~-L~~lp~-l----~--~~L~~L~Ls~N--~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~ 233 (571)
T 3cvr_A 168 RNNQ-LTFLPE-L----P--ESLEALDVSTN--LLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTC 233 (571)
T ss_dssp CSSC-CSCCCC-C----C--TTCCEEECCSS--CCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTE
T ss_pred CCCC-CCCcch-h----h--CCCCEEECcCC--CCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCC
Confidence 5554 222111 1 1 45555555554 4444443 100 0000111226666666 46666665555566666
Q ss_pred eEEecCC
Q 046441 400 ELYLGDC 406 (465)
Q Consensus 400 ~L~l~~c 406 (465)
.|++++|
T Consensus 234 ~L~L~~N 240 (571)
T 3cvr_A 234 TIILEDN 240 (571)
T ss_dssp EEECCSS
T ss_pred EEEeeCC
Confidence 6666663
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=2.4e-12 Score=129.09 Aligned_cols=176 Identities=22% Similarity=0.270 Sum_probs=137.9
Q ss_pred CCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceee
Q 046441 217 TSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRI 296 (465)
Q Consensus 217 ~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 296 (465)
.+|+.|++++|.. ..+|..+. ++|++|++++| .++.+| ..+++|+.|++++|. ++.+|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L-~~lp~~l~--~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNL-SSLPDNLP--PQITVLEITQN-ALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCC-SCCCSCCC--TTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCC-CccCHhHc--CCCCEEECcCC-CCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEEC
Confidence 3899999998754 44776553 78999999998 677888 345799999999985 566877 554 9999999
Q ss_pred ccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccce
Q 046441 297 GRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLAS 376 (465)
Q Consensus 297 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~ 376 (465)
++| .+..++. .+++|++|++++|. +..... .+++|++|++++| .+..+|. . . ++|++
T Consensus 128 s~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-------~l~~L~~L~Ls~N--~L~~lp~-l--------~-~~L~~ 184 (571)
T 3cvr_A 128 DNN-QLTMLPE--LPALLEYINADNNQ-LTMLPE-------LPTSLEVLSVRNN--QLTFLPE-L--------P-ESLEA 184 (571)
T ss_dssp CSS-CCSCCCC--CCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSS--CCSCCCC-C--------C-TTCCE
T ss_pred CCC-cCCCCCC--cCccccEEeCCCCc-cCcCCC-------cCCCcCEEECCCC--CCCCcch-h--------h-CCCCE
Confidence 998 4555766 67899999999998 333221 4689999999998 6666665 3 1 79999
Q ss_pred EeccCCCCCccccccccCCCCc-------ceEEecCCCCCCcCCCCC-CcccccEEeecCCch
Q 046441 377 LMIGNFPNLERLSSSIVDLQNL-------TELYLGDCPKLKYFPEKG-LPSSLLRLYIDECPL 431 (465)
Q Consensus 377 L~l~~c~~l~~l~~~~~~l~~L-------~~L~l~~c~~l~~l~~~~-~~~~L~~L~l~~c~~ 431 (465)
|++++ ++++.+|. +.. +| ++|++++ +.++.+|... .+++|++|++++|+-
T Consensus 185 L~Ls~-N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 185 LDVST-NLLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EECCS-SCCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred EECcC-CCCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcC
Confidence 99999 69999987 543 77 9999999 6899998732 279999999999854
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=1.7e-12 Score=131.58 Aligned_cols=176 Identities=18% Similarity=0.185 Sum_probs=137.8
Q ss_pred hcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCccc
Q 046441 213 LDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQ 292 (465)
Q Consensus 213 ~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 292 (465)
+..+++|+.|++++|.. ..++ .+..+++|+.|++++| .+..++. +..+++|+.|++++|. +..++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCC-CCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCC-CCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCC
Confidence 45678899999998664 4454 5888999999999998 5666665 5667899999999985 55665 688999999
Q ss_pred ceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCcc
Q 046441 293 ELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPA 372 (465)
Q Consensus 293 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~ 372 (465)
+|++++|. +..++....+++|+.|++++|. +... .. +..+++|+.|++++| .+..++. . ..++
T Consensus 113 ~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-l~~l-~~----l~~l~~L~~L~Ls~N--~l~~~~~-l-------~~l~ 175 (605)
T 1m9s_A 113 SLSLEHNG-ISDINGLVHLPQLESLYLGNNK-ITDI-TV----LSRLTKLDTLSLEDN--QISDIVP-L-------AGLT 175 (605)
T ss_dssp EEECTTSC-CCCCGGGGGCTTCSEEECCSSC-CCCC-GG----GGSCTTCSEEECCSS--CCCCCGG-G-------TTCT
T ss_pred EEEecCCC-CCCCccccCCCccCEEECCCCc-cCCc-hh----hcccCCCCEEECcCC--cCCCchh-h-------ccCC
Confidence 99999984 5556666778999999999997 3333 21 678999999999998 5655544 2 3667
Q ss_pred ccceEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCC
Q 046441 373 CLASLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPE 414 (465)
Q Consensus 373 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 414 (465)
+|+.|++++ +.++.++ .+..+++|+.|++++| .+...|.
T Consensus 176 ~L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N-~l~~~p~ 214 (605)
T 1m9s_A 176 KLQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQ-ECLNKPI 214 (605)
T ss_dssp TCCEEECCS-SCCCBCG-GGTTCTTCSEEECCSE-EEECCCC
T ss_pred CCCEEECcC-CCCCCCh-HHccCCCCCEEEccCC-cCcCCcc
Confidence 999999999 5888886 5888999999999995 4555444
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=4.6e-12 Score=128.38 Aligned_cols=168 Identities=13% Similarity=0.146 Sum_probs=87.4
Q ss_pred ccccceeecccCCCCcccccccccCCCCcEEEecCCCCCCCCCCCcCcCcccEEEccCCccccccccccccCCCCCccEE
Q 046441 23 SCRLEYLRLRYCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEIL 102 (465)
Q Consensus 23 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 102 (465)
+++|+.|++++|.. ..++ .++.+++|++|+|++| .+..+++++.+++|+.|++++|. +..++.. ..+++|+.|
T Consensus 42 L~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~l---~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENK-IKDLSSL---KDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCCC-CCCT-TGGGCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSC-CCCCTTS---TTCTTCCEE
T ss_pred CCCCCEEECcCCCC-CCCh-HHccCCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCCC-CCCChhh---ccCCCCCEE
Confidence 35666666666654 4444 3566666666666665 45555555566666666666653 4544432 344666666
Q ss_pred EecCCcCcceecCccCCCCccEEeeccccCccccccccccccCCCCCCchhhhcccCCeeeccCCCCccccccCCCcchh
Q 046441 103 EIWICCSLTYIAGVQLPRSLKRLHILLCNNIRTLTVEEGIQCSNSSSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPAT 182 (465)
Q Consensus 103 ~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 182 (465)
++++| .+..++....+++|+.|++++| .+..+ + .+.. +++|+.|++++ +.+..+.+
T Consensus 115 ~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N-~l~~l--~-~l~~-----------l~~L~~L~Ls~-N~l~~~~~------- 170 (605)
T 1m9s_A 115 SLEHN-GISDINGLVHLPQLESLYLGNN-KITDI--T-VLSR-----------LTKLDTLSLED-NQISDIVP------- 170 (605)
T ss_dssp ECTTS-CCCCCGGGGGCTTCSEEECCSS-CCCCC--G-GGGS-----------CTTCSEEECCS-SCCCCCGG-------
T ss_pred EecCC-CCCCCccccCCCccCEEECCCC-ccCCc--h-hhcc-----------cCCCCEEECcC-CcCCCchh-------
Confidence 66665 4444444444556666666553 23322 1 1111 45555555555 33333111
Q ss_pred hhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEecccccc
Q 046441 183 LESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCEN 229 (465)
Q Consensus 183 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 229 (465)
+ ..+ ++|+.|++++|. +..++ .+..+++|+.|++++|..
T Consensus 171 l-----~~l-~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 171 L-----AGL-TKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp G-----TTC-TTCCEEECCSSC-CCBCG-GGTTCTTCSEEECCSEEE
T ss_pred h-----ccC-CCCCEEECcCCC-CCCCh-HHccCCCCCEEEccCCcC
Confidence 1 233 455555555543 33332 355555555555555443
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=1.1e-12 Score=119.07 Aligned_cols=141 Identities=16% Similarity=0.184 Sum_probs=69.9
Q ss_pred CccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEe
Q 046441 194 SLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIY 273 (465)
Q Consensus 194 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 273 (465)
++..++++++. +.+++ .+..+++|++|++++|. +..++ .+..+++|++|++++| .++.++. +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCC-ccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence 34455555532 44433 35556666777766653 33344 4556666666666666 4444444 4445566666666
Q ss_pred cCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCC
Q 046441 274 GCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGC 350 (465)
Q Consensus 274 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 350 (465)
+|. +..++. +.. ++|++|++++| .+..++....+++|++|++++|. +.... . +..+++|++|++++|
T Consensus 94 ~N~-l~~l~~-~~~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~-i~~~~-~----l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 94 RNR-LKNLNG-IPS-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNNK-LKSIV-M----LGFLSKLEVLDLHGN 160 (263)
T ss_dssp SSC-CSCCTT-CCC-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTSC-CCBCG-G----GGGCTTCCEEECTTS
T ss_pred CCc-cCCcCc-ccc-CcccEEEccCC-ccCCChhhcCcccccEEECCCCc-CCCCh-H----HccCCCCCEEECCCC
Confidence 653 333432 222 55555555555 33333333444555555555554 22211 0 334455555555554
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.32 E-value=1.7e-11 Score=107.16 Aligned_cols=107 Identities=22% Similarity=0.289 Sum_probs=45.2
Q ss_pred hcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCC-CCCCCCCceEEEecCCCcCccc-ccccCCCc
Q 046441 213 LDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEG-GLPCAKLSKLRIYGCERLEALP-KGLHNLKS 290 (465)
Q Consensus 213 ~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~ 290 (465)
+..+++|++|++++|......+..+..+++|++|++++| .++.++.. +..+++|++|++++|. +..++ ..+..+++
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 125 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQ 125 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCc
Confidence 344445555555443322211222344455555555544 33333332 2334455555555543 22222 22344555
Q ss_pred ccceeeccCCCCCccCC--CCCCCccceeeecCC
Q 046441 291 LQELRIGRGVELPSLEE--DGLPTNLHSLEIDGN 322 (465)
Q Consensus 291 L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~ 322 (465)
|++|++++|. +..++. ...+++|++|++++|
T Consensus 126 L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 126 LKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCEEECCCCc-cceeCHHHhccCCCccEEEecCC
Confidence 5555555542 222222 233445555555555
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=3.2e-12 Score=116.09 Aligned_cols=172 Identities=18% Similarity=0.203 Sum_probs=131.5
Q ss_pred CCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCccccee
Q 046441 216 NTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELR 295 (465)
Q Consensus 216 l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 295 (465)
+.++..++++.+. +..++ .+..+++|++|++++| .++.++ ....+++|+.|++++|. +..++. +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~-i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQS-VTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSC-TTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCC-ccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEE
Confidence 4456666666644 33344 4677899999999998 777777 45667899999999985 666665 89999999999
Q ss_pred eccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccc
Q 046441 296 IGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLA 375 (465)
Q Consensus 296 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~ 375 (465)
+++| .+..++.... ++|++|++++|. +.... . +..+++|++|++++| .+..++.- ..+++|+
T Consensus 92 L~~N-~l~~l~~~~~-~~L~~L~L~~N~-l~~~~-~----l~~l~~L~~L~Ls~N--~i~~~~~l--------~~l~~L~ 153 (263)
T 1xeu_A 92 VNRN-RLKNLNGIPS-ACLSRLFLDNNE-LRDTD-S----LIHLKNLEILSIRNN--KLKSIVML--------GFLSKLE 153 (263)
T ss_dssp CCSS-CCSCCTTCCC-SSCCEEECCSSC-CSBSG-G----GTTCTTCCEEECTTS--CCCBCGGG--------GGCTTCC
T ss_pred CCCC-ccCCcCcccc-CcccEEEccCCc-cCCCh-h----hcCcccccEEECCCC--cCCCChHH--------ccCCCCC
Confidence 9998 4556665544 899999999997 44332 1 678999999999998 66666532 2567999
Q ss_pred eEeccCCCCCccccccccCCCCcceEEecCCCCCCcCCC
Q 046441 376 SLMIGNFPNLERLSSSIVDLQNLTELYLGDCPKLKYFPE 414 (465)
Q Consensus 376 ~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 414 (465)
+|++++ ++++.+ ..+..+++|+.|+++++ .+...|.
T Consensus 154 ~L~L~~-N~i~~~-~~l~~l~~L~~L~l~~N-~~~~~~~ 189 (263)
T 1xeu_A 154 VLDLHG-NEITNT-GGLTRLKKVNWIDLTGQ-KCVNEPV 189 (263)
T ss_dssp EEECTT-SCCCBC-TTSTTCCCCCEEEEEEE-EEECCCE
T ss_pred EEECCC-CcCcch-HHhccCCCCCEEeCCCC-cccCCcc
Confidence 999999 688888 46788999999999984 5555443
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=2.3e-11 Score=107.25 Aligned_cols=130 Identities=13% Similarity=0.182 Sum_probs=97.0
Q ss_pred CCCCccEEEecCCCChhhhhh-hhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCC-CCCCCCCc
Q 046441 191 LPPSLKVLDIYGCPKLESIAE-RLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEG-GLPCAKLS 268 (465)
Q Consensus 191 ~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~ 268 (465)
+|++++.|++++|. +..++. .+..+++|++|++++|......|..+.++++|++|++++| .++.++.. +..+++|+
T Consensus 30 l~~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 30 LPETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQ 107 (220)
T ss_dssp CCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cCcCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCC
Confidence 34789999999965 555554 5788999999999998766656788888999999999998 67777764 45578899
Q ss_pred eEEEecCCCcCcccccccCCCcccceeeccCCCCCccCC--CCCCCccceeeecCCc
Q 046441 269 KLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNM 323 (465)
Q Consensus 269 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~ 323 (465)
.|++++|......+..+..+++|++|++++|. +..++. ...+++|++|++++|.
T Consensus 108 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 99999986544446677888888888888874 444432 3445667777777665
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.27 E-value=2.7e-11 Score=105.88 Aligned_cols=127 Identities=20% Similarity=0.251 Sum_probs=86.8
Q ss_pred CCCcEEeccccccccccccccccCccccEEecccCcccccCCCC-CCCCCCCceEEEecCCCcCccc-ccccCCCcccce
Q 046441 217 TSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEG-GLPCAKLSKLRIYGCERLEALP-KGLHNLKSLQEL 294 (465)
Q Consensus 217 ~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L 294 (465)
++|++|+++++......+..+..+++|++|++++| .++.++.. +..+++|++|++++|. +..++ ..+..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEE
Confidence 46777777776544333445677889999999987 66666653 4567789999998876 44444 346788889999
Q ss_pred eeccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCC
Q 046441 295 RIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGC 350 (465)
Q Consensus 295 ~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 350 (465)
++++|. +..++. ...+++|++|++++|. +....... +..+++|++|++++|
T Consensus 106 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~---~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 106 ALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGV---FDRLTSLQYIWLHDN 158 (208)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT---TTTCTTCCEEECCSC
T ss_pred EcCCCc-CcccCHhHhccCCcCCEEECCCCc-cceeCHHH---hccCCCccEEEecCC
Confidence 888874 444443 3556788888888876 33333322 566778888888876
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=5.8e-11 Score=104.70 Aligned_cols=131 Identities=11% Similarity=0.179 Sum_probs=88.6
Q ss_pred ccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccc
Q 046441 157 SLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSG 236 (465)
Q Consensus 157 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~ 236 (465)
+++++|++++ +.++. ++...+ ..+ ++|++|++++|..-...|..|..+++|++|++++|......+..
T Consensus 32 ~~l~~L~l~~-n~i~~-i~~~~~---------~~l-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 99 (220)
T 2v9t_B 32 ETITEIRLEQ-NTIKV-IPPGAF---------SPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99 (220)
T ss_dssp TTCCEEECCS-SCCCE-ECTTSS---------TTC-TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred cCCCEEECCC-CcCCC-cCHhHh---------hCC-CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhH
Confidence 4577777777 56665 333222 334 67888888886533333566888888888888886554322334
Q ss_pred cccCccccEEecccCcccccCC-CCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCC
Q 046441 237 LHNLRQLQEISIEKCGNLESFP-EGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGV 300 (465)
Q Consensus 237 ~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 300 (465)
+..+++|++|++++| .++.++ ..+..+++|+.|++++|......+..+..+++|++|++++|+
T Consensus 100 f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 100 FEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 567888888888888 555554 456667788888888876433334457788888888888874
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.27 E-value=6.5e-11 Score=105.09 Aligned_cols=148 Identities=17% Similarity=0.215 Sum_probs=101.2
Q ss_pred ccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccc-c
Q 046441 157 SLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILP-S 235 (465)
Q Consensus 157 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~-~ 235 (465)
++-+.++.++ +.++. ++. .++++|++|++++|......+..+..+++|++|++++|.. ..++ .
T Consensus 19 Cs~~~v~c~~-~~l~~-ip~-------------~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~ 82 (229)
T 3e6j_A 19 CSGTTVDCRS-KRHAS-VPA-------------GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVG 82 (229)
T ss_dssp EETTEEECTT-SCCSS-CCS-------------CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT
T ss_pred EeCCEeEccC-CCcCc-cCC-------------CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChh
Confidence 3455666665 45554 332 2347889999988664343456678888899999988765 3444 4
Q ss_pred ccccCccccEEecccCcccccCCCC-CCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCC--CCCCC
Q 046441 236 GLHNLRQLQEISIEKCGNLESFPEG-GLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE--DGLPT 312 (465)
Q Consensus 236 ~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~ 312 (465)
.+..+++|++|++++| .++.++.. +..+++|+.|++++|. +..+|..+..+++|++|++++| .+..++. ...++
T Consensus 83 ~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLS 159 (229)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCT
T ss_pred hcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCC
Confidence 4677888888988888 66666653 4567788888888875 5577777788888888888887 3444442 24456
Q ss_pred ccceeeecCCc
Q 046441 313 NLHSLEIDGNM 323 (465)
Q Consensus 313 ~L~~L~l~~~~ 323 (465)
+|++|++++|.
T Consensus 160 ~L~~L~l~~N~ 170 (229)
T 3e6j_A 160 SLTHAYLFGNP 170 (229)
T ss_dssp TCCEEECTTSC
T ss_pred CCCEEEeeCCC
Confidence 66777766665
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.25 E-value=6.6e-11 Score=104.32 Aligned_cols=108 Identities=14% Similarity=0.062 Sum_probs=43.0
Q ss_pred cCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCceEEEecCCCcCcccccccCCCccc
Q 046441 214 DNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQ 292 (465)
Q Consensus 214 ~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 292 (465)
..+++|++|++++|......+..+..+++|++|++++| .++.++. .+..+++|+.|++++|......|..+..+++|+
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 34444444444443322222223444444444444444 2233322 222334444444444432222233444444455
Q ss_pred ceeeccCCCCCcc-CC-CCCCCccceeeecCCc
Q 046441 293 ELRIGRGVELPSL-EE-DGLPTNLHSLEIDGNM 323 (465)
Q Consensus 293 ~L~l~~~~~~~~~-~~-~~~~~~L~~L~l~~~~ 323 (465)
+|++++|. +..+ +. ...+++|++|++++|.
T Consensus 133 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 133 LLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence 55554442 2222 11 2334455555555544
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.25 E-value=6.6e-11 Score=105.04 Aligned_cols=129 Identities=18% Similarity=0.196 Sum_probs=86.8
Q ss_pred ccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhh-hhcCCCCCcEEecccccccccccc
Q 046441 157 SLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAE-RLDNNTSLETISILCCENLKILPS 235 (465)
Q Consensus 157 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~ 235 (465)
++|++|++++ +.++. +....+ ..+ ++|++|++++|. +..++. .+..+++|++|++++|......+.
T Consensus 40 ~~L~~L~Ls~-n~i~~-~~~~~~---------~~l-~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 40 TNAQILYLHD-NQITK-LEPGVF---------DSL-INLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp TTCSEEECCS-SCCCC-CCTTTT---------TTC-TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCEEEcCC-CccCc-cCHHHh---------hCc-cCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence 4577777776 45554 222111 334 678888888765 455553 357788888888888654443344
Q ss_pred ccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCccc-ccccCCCcccceeeccCC
Q 046441 236 GLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALP-KGLHNLKSLQELRIGRGV 300 (465)
Q Consensus 236 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 300 (465)
.+..+++|++|++++| .++.+|..+..+++|+.|++++|. +..++ ..+..+++|+.|++++|+
T Consensus 107 ~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred HhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 4667888888888887 667777777777788888888875 44444 456778888888888874
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.23 E-value=3.5e-11 Score=114.72 Aligned_cols=152 Identities=14% Similarity=0.167 Sum_probs=98.1
Q ss_pred CCCccEEEecCCCChhhhhhh-hc-CCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCc
Q 046441 192 PPSLKVLDIYGCPKLESIAER-LD-NNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLS 268 (465)
Q Consensus 192 ~~~L~~L~l~~~~~l~~~~~~-~~-~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~ 268 (465)
|+.++.|++++|. +..++.. +. .+++|++|++++|......+..+..+++|++|++++| .++.++. .+..+++|+
T Consensus 38 ~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 38 PSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALE 115 (361)
T ss_dssp CTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCC
Confidence 4667888888864 5444443 44 7788888888886555444456777888888888887 4666554 455677888
Q ss_pred eEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCC-----CCCCccceeeecCCcccccccccccccCCCCCC--
Q 046441 269 KLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEED-----GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSS-- 341 (465)
Q Consensus 269 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-- 341 (465)
.|++++|......+..+..+++|++|++++| .+..++.. ..+++|++|++++|. +....... +..++.
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~---~~~l~~~~ 190 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTD---LQKLPAWV 190 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHH---HHHSCHHH
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHH---hhhccHhh
Confidence 8888887644344566777888888888887 44444432 346778888888876 33332221 334454
Q ss_pred ccEEEecCC
Q 046441 342 LRCLAISGC 350 (465)
Q Consensus 342 L~~L~l~~~ 350 (465)
++.|++.+|
T Consensus 191 l~~l~l~~N 199 (361)
T 2xot_A 191 KNGLYLHNN 199 (361)
T ss_dssp HTTEECCSS
T ss_pred cceEEecCC
Confidence 367777775
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=1.4e-13 Score=138.53 Aligned_cols=197 Identities=13% Similarity=0.087 Sum_probs=108.6
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccc-------------cccccccccccCccccEEe-cccCcccccCC
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCE-------------NLKILPSGLHNLRQLQEIS-IEKCGNLESFP 258 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~-------------~~~~l~~~~~~~~~L~~L~-l~~~~~l~~l~ 258 (465)
++|+.|+++++. ++.+|..++.+++|+.|+++++. ..+..|..+..+++|+.|+ ++.+ .+..
T Consensus 349 ~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~-- 424 (567)
T 1dce_A 349 EQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDD-- 424 (567)
T ss_dssp TTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHH--
T ss_pred ccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccch--
Confidence 678888888854 77888888889999998886654 2333455666677777777 4433 2211
Q ss_pred CCCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccccccccCCC
Q 046441 259 EGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHR 338 (465)
Q Consensus 259 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 338 (465)
|+.+.+.+|. +..++. ..|+.|++++| .+..+|..+.+++|++|++++|. +...+.. +..
T Consensus 425 --------L~~l~l~~n~-i~~l~~-----~~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~-l~~lp~~----~~~ 484 (567)
T 1dce_A 425 --------LRSKFLLENS-VLKMEY-----ADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNR-LRALPPA----LAA 484 (567)
T ss_dssp --------HHHHHHHHHH-HHHHHH-----TTCSEEECTTS-CCSSCCCGGGGTTCCEEECCSSC-CCCCCGG----GGG
T ss_pred --------hhhhhhhccc-ccccCc-----cCceEEEecCC-CCCCCcCccccccCcEeecCccc-ccccchh----hhc
Confidence 1111111111 111110 12344444443 22233333333444444444443 2222111 455
Q ss_pred CCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccc--cccccCCCCcceEEecCCCCCCcCCCCC
Q 046441 339 FSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERL--SSSIVDLQNLTELYLGDCPKLKYFPEKG 416 (465)
Q Consensus 339 ~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 416 (465)
+++|++|++++| .+..+| .. ..+++|+.|++++ ++++.+ |..+..+++|++|++++ +.++.+|...
T Consensus 485 l~~L~~L~Ls~N--~l~~lp-~l-------~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~ 552 (567)
T 1dce_A 485 LRCLEVLQASDN--ALENVD-GV-------ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQ 552 (567)
T ss_dssp CTTCCEEECCSS--CCCCCG-GG-------TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCT
T ss_pred CCCCCEEECCCC--CCCCCc-cc-------CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecC-CcCCCCccHH
Confidence 667777777765 555555 22 2456777777777 577766 56777778888888887 4566655422
Q ss_pred -----CcccccEEe
Q 046441 417 -----LPSSLLRLY 425 (465)
Q Consensus 417 -----~~~~L~~L~ 425 (465)
.+|+|+.|+
T Consensus 553 ~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 553 ERLAEMLPSVSSIL 566 (567)
T ss_dssp THHHHHCTTCSEEE
T ss_pred HHHHHHCcccCccC
Confidence 146677664
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.21 E-value=1.1e-10 Score=102.87 Aligned_cols=127 Identities=14% Similarity=0.103 Sum_probs=86.2
Q ss_pred CCcEEeccccccccccc-cccccCccccEEecccCcccccCCC-CCCCCCCCceEEEecCCCcCcccccccCCCccccee
Q 046441 218 SLETISILCCENLKILP-SGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELR 295 (465)
Q Consensus 218 ~L~~L~l~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 295 (465)
.+++|++++|......+ ..+..+++|++|++++| .++.++. .+..+++|+.|++++|......+..+..+++|++|+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 45566666654433222 33667888888888887 5666655 566677888888888865444445578888888888
Q ss_pred eccCCCCCcc-CC-CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCC
Q 046441 296 IGRGVELPSL-EE-DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGC 350 (465)
Q Consensus 296 l~~~~~~~~~-~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 350 (465)
+++|. +..+ +. ...+++|++|++++|. +....+.. +..+++|++|++++|
T Consensus 112 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 112 LRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGA---FDTLHSLSTLNLLAN 163 (220)
T ss_dssp CTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTT---TTTCTTCCEEECCSC
T ss_pred CCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECHHH---hcCCCCCCEEEecCc
Confidence 88874 3333 22 3566788888888887 44333332 667888888888886
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.20 E-value=5.7e-11 Score=100.02 Aligned_cols=132 Identities=15% Similarity=0.083 Sum_probs=77.4
Q ss_pred CCCCCcEEeccccccc-cccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccc
Q 046441 215 NNTSLETISILCCENL-KILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQE 293 (465)
Q Consensus 215 ~l~~L~~L~l~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 293 (465)
..++|+.|++++|... ..+|..+..+++|++|++++| .++.+ ..+..+++|+.|++++|.....+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3456666666665543 245666667777778877777 35555 45555677888888877644446655666778888
Q ss_pred eeeccCCCCCccC---CCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCC
Q 046441 294 LRIGRGVELPSLE---EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGC 350 (465)
Q Consensus 294 L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 350 (465)
|++++|. +..++ ....+++|++|++++|. +..........+..+++|++|++++|
T Consensus 100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 100 LNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 8888773 33332 23445566666666665 22222200001445666666666665
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.20 E-value=9.7e-11 Score=111.59 Aligned_cols=104 Identities=21% Similarity=0.332 Sum_probs=54.4
Q ss_pred CCccEEEecCCCChhhhhh-hhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCC----CCCCCC
Q 046441 193 PSLKVLDIYGCPKLESIAE-RLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGG----LPCAKL 267 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~----~~~~~L 267 (465)
++|+.|++++|. +..++. .|..+++|++|++++|......+..+..+++|++|++++| .++.++... ..+++|
T Consensus 88 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 88 PNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTC
T ss_pred CCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcC
Confidence 456666666544 333332 3555666666666665544434555566666666666665 455554422 235566
Q ss_pred ceEEEecCCCcCccc-ccccCCCc--ccceeeccC
Q 046441 268 SKLRIYGCERLEALP-KGLHNLKS--LQELRIGRG 299 (465)
Q Consensus 268 ~~L~l~~~~~~~~~~-~~~~~l~~--L~~L~l~~~ 299 (465)
+.|++++|. +..+| ..+..++. ++.|++++|
T Consensus 166 ~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 166 MLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CEEECCSSC-CCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CEEECCCCC-CCccCHHHhhhccHhhcceEEecCC
Confidence 666666654 33333 23444444 355666655
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=9.1e-13 Score=132.70 Aligned_cols=122 Identities=19% Similarity=0.176 Sum_probs=72.2
Q ss_pred CCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCcccceeec
Q 046441 218 SLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIG 297 (465)
Q Consensus 218 ~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 297 (465)
.|+.|++++|.. ..+|. +..+++|+.|++++| .++.+|..+..+++|+.|++++|. ++.+| .++.+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCC-SSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCC-CCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECC
Confidence 466677776533 33554 666677777777766 555666656666677777777764 44455 56677777777777
Q ss_pred cCCCCCcc--C-CCCCCCccceeeecCCcccccccccccccCCCCCCccEEE
Q 046441 298 RGVELPSL--E-EDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLA 346 (465)
Q Consensus 298 ~~~~~~~~--~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 346 (465)
+|. +..+ | ..+.+++|++|++++|. +...++........+++|+.|+
T Consensus 517 ~N~-l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCC-CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 763 3333 2 23556677777777776 3333322211123467777775
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.14 E-value=1.5e-10 Score=97.42 Aligned_cols=68 Identities=25% Similarity=0.248 Sum_probs=34.8
Q ss_pred CCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc----cccCCCCcceEEecCCCCCCcCC
Q 046441 338 RFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS----SIVDLQNLTELYLGDCPKLKYFP 413 (465)
Q Consensus 338 ~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l~~c~~l~~l~ 413 (465)
.+++|++|++++| .+..++... .+..+++|++|++++ +.++.++. .+..+++|++|++.+| .+.++|
T Consensus 93 ~l~~L~~L~Ls~N--~l~~~~~~~-----~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~ 163 (168)
T 2ell_A 93 KLPNLTHLNLSGN--KLKDISTLE-----PLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAP 163 (168)
T ss_dssp HCTTCCEEECBSS--SCCSSGGGG-----GGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCC
T ss_pred hCCCCCEEeccCC--ccCcchhHH-----HHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCC-Chhhcc
Confidence 3555666666655 444433100 012344566666665 35555554 4556677777777664 344444
Q ss_pred C
Q 046441 414 E 414 (465)
Q Consensus 414 ~ 414 (465)
.
T Consensus 164 ~ 164 (168)
T 2ell_A 164 D 164 (168)
T ss_dssp S
T ss_pred c
Confidence 3
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=7.4e-10 Score=104.07 Aligned_cols=12 Identities=67% Similarity=0.877 Sum_probs=9.7
Q ss_pred CCccEEEecCCC
Q 046441 193 PSLKVLDIYGCP 204 (465)
Q Consensus 193 ~~L~~L~l~~~~ 204 (465)
++|+.|++++|.
T Consensus 49 ~~L~~LdLs~n~ 60 (329)
T 3sb4_A 49 PSLKVLDISNAE 60 (329)
T ss_dssp TTCCEEEEEEEE
T ss_pred ccCeEEecCcce
Confidence 778889888865
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.11 E-value=8.5e-11 Score=96.76 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=44.3
Q ss_pred CCCcEEeccccccc-cccccccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCccccee
Q 046441 217 TSLETISILCCENL-KILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELR 295 (465)
Q Consensus 217 ~~L~~L~l~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 295 (465)
++|+.|++++|... +.+|..+..+++|++|++++| .++.+ ..+..+++|+.|++++|.....+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45555555555433 244555555666666666665 44444 3344455666666666553333555455566666666
Q ss_pred eccC
Q 046441 296 IGRG 299 (465)
Q Consensus 296 l~~~ 299 (465)
+++|
T Consensus 95 ls~N 98 (149)
T 2je0_A 95 LSGN 98 (149)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 6665
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=2.4e-09 Score=100.54 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=51.4
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCc-eE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLS-KL 270 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~-~L 270 (465)
.+++.+.+.+.-...........+++|+.+++.+|.....-...+.++++|+++++.++ ++.++. .+..+++|+ .+
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEE
Confidence 44555555543221221111223666666666664433222334556666666666654 555544 344455566 66
Q ss_pred EEecCCCcCccc-ccccCCCcccceeeccC
Q 046441 271 RIYGCERLEALP-KGLHNLKSLQELRIGRG 299 (465)
Q Consensus 271 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~ 299 (465)
++.. .++.++ ..|..+++|+.+++.++
T Consensus 280 ~l~~--~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 280 ELPA--SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp EECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred EEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence 6655 233332 34555556666655443
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.06 E-value=2.2e-10 Score=94.25 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=15.3
Q ss_pred ccccEEecccCcccc--cCCCCCCCCCCCceEEEecC
Q 046441 241 RQLQEISIEKCGNLE--SFPEGGLPCAKLSKLRIYGC 275 (465)
Q Consensus 241 ~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~ 275 (465)
++|++|++++| .+. .++..+..+++|+.|++++|
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n 52 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINV 52 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTS
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCC
Confidence 44555555555 232 33433333444444444444
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.05 E-value=8.6e-10 Score=94.90 Aligned_cols=125 Identities=16% Similarity=0.238 Sum_probs=83.4
Q ss_pred CCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhh--hcCCCCCcEEeccccccccccccc
Q 046441 159 LEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAER--LDNNTSLETISILCCENLKILPSG 236 (465)
Q Consensus 159 L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~l~~L~~L~l~~~~~~~~l~~~ 236 (465)
-+.+++++ +.++. ++. .+++++++|++++|. +..++.. ++.+++|++|++++|...+..|..
T Consensus 10 ~~~l~~s~-~~l~~-ip~-------------~~~~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 73 (192)
T 1w8a_A 10 GTTVDCTG-RGLKE-IPR-------------DIPLHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA 73 (192)
T ss_dssp TTEEECTT-SCCSS-CCS-------------CCCTTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT
T ss_pred CCEEEcCC-CCcCc-Ccc-------------CCCCCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhH
Confidence 35666666 55554 332 223578888888864 5555542 778888888888887666555677
Q ss_pred cccCccccEEecccCcccccCCC-CCCCCCCCceEEEecCCCcCcccccccCCCcccceeeccCC
Q 046441 237 LHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLKSLQELRIGRGV 300 (465)
Q Consensus 237 ~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 300 (465)
+..+++|++|++++| .++.++. .+..+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 74 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 74 FEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 777888888888887 4555544 35556778888887776444445666677777777777764
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.04 E-value=1.6e-09 Score=93.17 Aligned_cols=105 Identities=20% Similarity=0.300 Sum_probs=70.0
Q ss_pred CCCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCceE
Q 046441 192 PPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKL 270 (465)
Q Consensus 192 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L 270 (465)
+++|++|++++|. +..+|..+..+++|+.|++++|......+..+.++++|++|++++| .++.++. .+..+++|+.|
T Consensus 30 ~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 30 PRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp CTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEE
Confidence 3678888888854 5667777788888888888886655544556777788888888877 4555544 44556677777
Q ss_pred EEecCCCcCcccc-cccCCCcccceeeccC
Q 046441 271 RIYGCERLEALPK-GLHNLKSLQELRIGRG 299 (465)
Q Consensus 271 ~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~ 299 (465)
++++|. +..++. .+..+++|++|++++|
T Consensus 108 ~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 108 SLHGND-ISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp ECCSSC-CCBCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCC-CCeeChhhhhcCccccEEEeCCC
Confidence 777764 334433 3555666666666665
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.97 E-value=4e-10 Score=95.55 Aligned_cols=102 Identities=25% Similarity=0.252 Sum_probs=42.1
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCC-CCCCCCceEE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGG-LPCAKLSKLR 271 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~ 271 (465)
++|+.|++++|. +..++......++|++|++++|.... + ..+..+++|++|++++| .++.++... ..+++|+.|+
T Consensus 19 ~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEE
Confidence 345555555532 32332211112245555555443222 2 33444455555555554 333333322 2334444444
Q ss_pred EecCCCcCcccc--cccCCCcccceeeccC
Q 046441 272 IYGCERLEALPK--GLHNLKSLQELRIGRG 299 (465)
Q Consensus 272 l~~~~~~~~~~~--~~~~l~~L~~L~l~~~ 299 (465)
+++|. +..+|. .+..+++|++|++++|
T Consensus 95 L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 95 LTNNS-LVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp CCSCC-CCCGGGGGGGGGCTTCCEEECCSS
T ss_pred CCCCc-CCcchhhHhhhcCCCCCEEEecCC
Confidence 44443 233332 3444444444444444
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.94 E-value=1.3e-09 Score=92.33 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=43.8
Q ss_pred CCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc--cccCCCCcceEEecCCCCCCcCC
Q 046441 336 FHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS--SIVDLQNLTELYLGDCPKLKYFP 413 (465)
Q Consensus 336 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~ 413 (465)
+..+++|++|++++| .+..++... +..+++|++|++++ ++++.++. .+..+++|++|++++ +.+..+|
T Consensus 60 l~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~ 129 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNN--RICRIGEGL------DQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILR-NPVTNKK 129 (176)
T ss_dssp CCCCSSCCEEECCSS--CCCEECSCH------HHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCS-SGGGGST
T ss_pred cccCCCCCEEECCCC--cccccCcch------hhcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecC-CCCCCcH
Confidence 344455555555554 333333211 01234555555555 35555554 455666666666666 3455554
Q ss_pred CC-----CCcccccEEeecCCch
Q 046441 414 EK-----GLPSSLLRLYIDECPL 431 (465)
Q Consensus 414 ~~-----~~~~~L~~L~l~~c~~ 431 (465)
.. ..+++|++|+++++..
T Consensus 130 ~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 130 HYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp THHHHHHHHCTTCSEETTEECCH
T ss_pred hHHHHHHHHCCccceeCCCcCCH
Confidence 41 1246677777666644
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.93 E-value=5e-10 Score=116.29 Aligned_cols=146 Identities=17% Similarity=0.120 Sum_probs=88.4
Q ss_pred cccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhhhhhcCCCCCcEEecccccccccccc
Q 046441 156 SSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPS 235 (465)
Q Consensus 156 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~ 235 (465)
+++|+.|++++ +.+.. ++. .+ ..+ ++|++|++++|. +..+|..++.+++|++|++++|... .+|.
T Consensus 223 l~~L~~L~Ls~-n~l~~-l~~-----~~-----~~l-~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~ 287 (727)
T 4b8c_D 223 DQLWHALDLSN-LQIFN-ISA-----NI-----FKY-DFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLT-SLPA 287 (727)
T ss_dssp CCCCCEEECTT-SCCSC-CCG-----GG-----GGC-CSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCS-SCCS
T ss_pred CCCCcEEECCC-CCCCC-CCh-----hh-----cCC-CCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCC-ccCh
Confidence 45677777776 34443 221 22 223 677888888764 5577777888888888888886644 6787
Q ss_pred ccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccccCCCc-ccceeeccCCCCCccCCCCCCCcc
Q 046441 236 GLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGLHNLKS-LQELRIGRGVELPSLEEDGLPTNL 314 (465)
Q Consensus 236 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~L 314 (465)
.+..+++|++|++++| .++.+|..+..+++|+.|++++|......|..+..+.. +..+++++|.... ..+..+
T Consensus 288 ~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~-----~~p~~l 361 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI-----PLPHER 361 (727)
T ss_dssp SGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCC-
T ss_pred hhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC-----cCcccc
Confidence 8888888888888887 66778777777788888888888755555554443221 2235566653322 233456
Q ss_pred ceeeecCC
Q 046441 315 HSLEIDGN 322 (465)
Q Consensus 315 ~~L~l~~~ 322 (465)
+.|+++.+
T Consensus 362 ~~l~l~~n 369 (727)
T 4b8c_D 362 RFIEINTD 369 (727)
T ss_dssp --------
T ss_pred ceeEeecc
Confidence 66666655
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.90 E-value=1.7e-07 Score=90.10 Aligned_cols=210 Identities=11% Similarity=0.131 Sum_probs=123.1
Q ss_pred CccEEEecCCCChhhhh-hhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCceEE
Q 046441 194 SLKVLDIYGCPKLESIA-ERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLR 271 (465)
Q Consensus 194 ~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 271 (465)
+|+.+.+.. .+..+. ..|.+|++|+.+++..+. +..++.....+.+|+.+.+.. .++.+.. .+..+++|+.+.
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEe
Confidence 466666654 233333 236677777777776643 333443333356777777763 3555554 444566777777
Q ss_pred EecCCCcCcccc-cccCCCcccceeeccCCCCCccCC--CCCCCccceeeecCCccccc---ccccccccCCCCCCccEE
Q 046441 272 IYGCERLEALPK-GLHNLKSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWK---STIEWGRGFHRFSSLRCL 345 (465)
Q Consensus 272 l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~~~L~~L 345 (465)
+..+ +..++. .|.. .+|+.+.+..+ +..++. ...+++|+.+.+.++..... .+.... +.+|++|+.+
T Consensus 233 l~~~--l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a--F~~c~~L~~l 305 (401)
T 4fdw_A 233 IPEN--VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC--LEGCPKLARF 305 (401)
T ss_dssp CCTT--CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT--TTTCTTCCEE
T ss_pred cCCC--ccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH--hhCCccCCeE
Confidence 7653 444432 3333 56777777432 344433 23456777777766542200 111111 7788888888
Q ss_pred EecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-cccCCCCcceEEecCCCCCCcCCCCCC---cccc
Q 046441 346 AISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGDCPKLKYFPEKGL---PSSL 421 (465)
Q Consensus 346 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L 421 (465)
.+.+ .++.++... +....+|+.+++.. +++.++. .+.++ +|+.+++.+ +.+..++...+ ..++
T Consensus 306 ~l~~---~i~~I~~~a------F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 306 EIPE---SIRILGQGL------LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp CCCT---TCCEECTTT------TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTC
T ss_pred EeCC---ceEEEhhhh------hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCc
Confidence 8875 345554422 33456888888854 6777765 67778 899999988 46666655433 3577
Q ss_pred cEEeecC
Q 046441 422 LRLYIDE 428 (465)
Q Consensus 422 ~~L~l~~ 428 (465)
+.|.+-.
T Consensus 373 ~~l~vp~ 379 (401)
T 4fdw_A 373 TVIRVPA 379 (401)
T ss_dssp CEEEECG
T ss_pred cEEEeCH
Confidence 7887765
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.88 E-value=1.1e-08 Score=87.85 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=82.3
Q ss_pred cEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCceEEEec
Q 046441 196 KVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYG 274 (465)
Q Consensus 196 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~ 274 (465)
+.++++++ .+..+|..+ .++|++|++++|.. ..+|..+..+++|++|++++| .++.++. .+..+++|+.|++++
T Consensus 13 ~~l~~~~~-~l~~ip~~~--~~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGI--PRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTS-CCSSCCSCC--CTTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CCCcCCCCC--CCCCCEEECCCCcC-chhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC
Confidence 45566653 355566543 25788999988654 457777888888999999888 5666654 456677888888888
Q ss_pred CCCcCcccccccCCCcccceeeccCCCCCccCC--CCCCCccceeeecCCc
Q 046441 275 CERLEALPKGLHNLKSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNM 323 (465)
Q Consensus 275 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~ 323 (465)
|......+..+..+++|++|++++|. +..++. ...+++|++|++++|.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 76433334467778888888888873 444443 2345666666666665
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.88 E-value=8.6e-09 Score=88.57 Aligned_cols=123 Identities=16% Similarity=0.135 Sum_probs=64.8
Q ss_pred cEEEecCCCChhhhhhhhcCCCCCcEEecccccccccccc--ccccCccccEEecccCcccccC-CCCCCCCCCCceEEE
Q 046441 196 KVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPS--GLHNLRQLQEISIEKCGNLESF-PEGGLPCAKLSKLRI 272 (465)
Q Consensus 196 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l 272 (465)
+.++++++. ++.+|..+. .+|+.|++++|.... ++. .+..+++|++|++++| .++.+ +..+..+++|+.|++
T Consensus 11 ~~l~~s~~~-l~~ip~~~~--~~l~~L~l~~n~i~~-~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIP--LHTTELLLNDNELGR-ISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSC-CSSCCSCCC--TTCSEEECCSCCCCS-BCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCC-cCcCccCCC--CCCCEEECCCCcCCc-cCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEEC
Confidence 556666633 455555433 267777777754333 332 2566677777777766 34444 344555666666666
Q ss_pred ecCCCcCcccccccCCCcccceeeccCCCCCccCC-CCCCCccceeeecCCc
Q 046441 273 YGCERLEALPKGLHNLKSLQELRIGRGVELPSLEE-DGLPTNLHSLEIDGNM 323 (465)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 323 (465)
++|......+..++.+++|++|++++|......+. .+.+++|++|++++|.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 66653333333455666666666666532222121 2334445555555444
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.88 E-value=1.6e-08 Score=85.66 Aligned_cols=104 Identities=21% Similarity=0.288 Sum_probs=59.5
Q ss_pred CCccEEEecCCCChhhhhh-hhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCC-CCCCCCCceE
Q 046441 193 PSLKVLDIYGCPKLESIAE-RLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEG-GLPCAKLSKL 270 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L 270 (465)
++|++|++++|. +..++. .+..+++|++|++++|......+..+..+++|++|++++| .++.++.. +..+++|+.|
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence 667777777754 444443 3566777777777775443322333566677777777766 45555442 3445566666
Q ss_pred EEecCCCcCcccc-cccCCCcccceeeccC
Q 046441 271 RIYGCERLEALPK-GLHNLKSLQELRIGRG 299 (465)
Q Consensus 271 ~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~ 299 (465)
++++|. +..+|. .+..+++|++|++++|
T Consensus 106 ~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 106 ALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred ECcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence 666654 334433 2345556666666555
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.87 E-value=5.9e-07 Score=86.40 Aligned_cols=206 Identities=14% Similarity=0.117 Sum_probs=124.7
Q ss_pred CCccEEEecCCCChhhhh-hhhcCCCCCcEEecccccccccc-ccccccCccccEEecccCcccccCCCCCCCCCCCceE
Q 046441 193 PSLKVLDIYGCPKLESIA-ERLDNNTSLETISILCCENLKIL-PSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKL 270 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 270 (465)
++|+.+.+.+. +..++ ..|..+.+|+.+.+..+ +..+ ...+.++..|+.+.+... ...+........+|+.+
T Consensus 162 ~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i 235 (394)
T 4fs7_A 162 ESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNI 235 (394)
T ss_dssp TTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEE
T ss_pred CCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceE
Confidence 56777777542 22232 23667778887777653 2222 334566777777766543 33344444455678888
Q ss_pred EEecCCCcCccc-ccccCCCcccceeeccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCCCCccEEEe
Q 046441 271 RIYGCERLEALP-KGLHNLKSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAI 347 (465)
Q Consensus 271 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 347 (465)
.+... ...+. ..+..+..++.+.+..+. ..+.. ...+..++.+...... ..... +..+.+|+.+.+
T Consensus 236 ~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~--~~i~~~~F~~~~~l~~~~~~~~~-----i~~~~--F~~~~~L~~i~l 304 (394)
T 4fs7_A 236 IIPDS--FTELGKSVFYGCTDLESISIQNNK--LRIGGSLFYNCSGLKKVIYGSVI-----VPEKT--FYGCSSLTEVKL 304 (394)
T ss_dssp EECTT--CCEECSSTTTTCSSCCEEEECCTT--CEECSCTTTTCTTCCEEEECSSE-----ECTTT--TTTCTTCCEEEE
T ss_pred EECCC--ceecccccccccccceeEEcCCCc--ceeeccccccccccceeccCcee-----ecccc--cccccccccccc
Confidence 77552 23332 345667778888776542 22222 2344566666655432 11111 667888999888
Q ss_pred cCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-cccCCCCcceEEecCCCCCCcCCCCCC--cccccEE
Q 046441 348 SGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGDCPKLKYFPEKGL--PSSLLRL 424 (465)
Q Consensus 348 ~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L 424 (465)
... ++.+.... +....+|+.+++.+ +++.++. .+.+|.+|+.+.+.. .++.+....+ +++|+.+
T Consensus 305 ~~~---i~~I~~~a------F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 305 LDS---VKFIGEEA------FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKV 371 (394)
T ss_dssp CTT---CCEECTTT------TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEE
T ss_pred ccc---cceechhh------hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEE
Confidence 763 44444322 23456888888864 5777765 678889999998875 3778877555 6788888
Q ss_pred eecC
Q 046441 425 YIDE 428 (465)
Q Consensus 425 ~l~~ 428 (465)
++..
T Consensus 372 ~lp~ 375 (394)
T 4fs7_A 372 ELPK 375 (394)
T ss_dssp EEEG
T ss_pred EECC
Confidence 8864
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.81 E-value=8.9e-07 Score=85.04 Aligned_cols=190 Identities=11% Similarity=0.111 Sum_probs=113.3
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEecccccccccc-ccccccCccccEEecccCcccccCCCCCCCCCCCceEE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKIL-PSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLR 271 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 271 (465)
++|+.+++.++ .+..++.....+.+|+.+.+..+ +..+ ...+.++++|+.+.+.. +++.+....+...+|+.+.
T Consensus 180 ~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~ 254 (401)
T 4fdw_A 180 YNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVK 254 (401)
T ss_dssp TTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEE
T ss_pred ccCCeeecCCC-cceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEEE
Confidence 66777777763 35555555434677888777642 3333 34566777888888775 3566665444445788888
Q ss_pred EecCCCcCcc-cccccCCCcccceeeccCCCC----CccCC--CCCCCccceeeecCCcccccccccccccCCCCCCccE
Q 046441 272 IYGCERLEAL-PKGLHNLKSLQELRIGRGVEL----PSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRC 344 (465)
Q Consensus 272 l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~----~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~ 344 (465)
+.. .+..+ ...|..+++|+.+.+.++... ..++. ...+++|+.+.+.++ +....... +.++++|+.
T Consensus 255 lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~a---F~~c~~L~~ 327 (401)
T 4fdw_A 255 LPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGL---LGGNRKVTQ 327 (401)
T ss_dssp EET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTT---TTTCCSCCE
T ss_pred eCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhh---hcCCCCccE
Confidence 854 24444 346677788888887765321 12322 245667888887742 33332222 677888888
Q ss_pred EEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-cccCCC-CcceEEecC
Q 046441 345 LAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIVDLQ-NLTELYLGD 405 (465)
Q Consensus 345 L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~-~L~~L~l~~ 405 (465)
+.+..+ +..+.... +... +|+.+++.+ +.+..++. .+.+++ .++.|++..
T Consensus 328 l~lp~~---l~~I~~~a------F~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 328 LTIPAN---VTQINFSA------FNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp EEECTT---CCEECTTS------SSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred EEECcc---ccEEcHHh------CCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEeCH
Confidence 888663 44444322 2344 788888887 45555544 444553 566776654
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.78 E-value=5.2e-08 Score=82.45 Aligned_cols=122 Identities=20% Similarity=0.281 Sum_probs=64.9
Q ss_pred cEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCC-CCCCCCCceEEEec
Q 046441 196 KVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEG-GLPCAKLSKLRIYG 274 (465)
Q Consensus 196 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~ 274 (465)
+.+++.++. +..+|..+ .++|+.|++++|......+..+..+++|++|++++| .++.++.. +..+++|+.|++++
T Consensus 10 ~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKG-LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSC-CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCC-CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 445555432 44444322 256777777775543322334566777777777776 45555542 34566677777766
Q ss_pred CCCcCccc-ccccCCCcccceeeccCCCCCccCCC--CCCCccceeeecCCc
Q 046441 275 CERLEALP-KGLHNLKSLQELRIGRGVELPSLEED--GLPTNLHSLEIDGNM 323 (465)
Q Consensus 275 ~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~ 323 (465)
|. ++.++ ..+..+++|++|++++| .+..++.. ..+++|++|++++|.
T Consensus 86 N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 64 33333 33456666666666665 33333321 234455555555544
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.75 E-value=1.1e-08 Score=106.12 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=60.7
Q ss_pred CCccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEE
Q 046441 193 PSLKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRI 272 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 272 (465)
+.|+.|++++|. +..+|..+..+++|++|++++|... .+|..+..+++|++|++++| .++.+|..+..+++|+.|++
T Consensus 224 ~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEEC
Confidence 456666666644 3455555556666666666665433 45555666666666666665 34455555555556666666
Q ss_pred ecCCCcCcccccccCCCcccceeeccCC
Q 046441 273 YGCERLEALPKGLHNLKSLQELRIGRGV 300 (465)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 300 (465)
++|. +..+|..++.+++|++|++++|.
T Consensus 301 ~~N~-l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 301 FDNM-VTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CSSC-CCCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCC-CCccChhhhcCCCccEEeCCCCc
Confidence 6653 44555556666666666666654
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.75 E-value=2e-10 Score=99.52 Aligned_cols=124 Identities=15% Similarity=0.255 Sum_probs=86.0
Q ss_pred CccEEEecCC-CChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCCceEEE
Q 046441 194 SLKVLDIYGC-PKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRI 272 (465)
Q Consensus 194 ~L~~L~l~~~-~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 272 (465)
.++...+.+. ..++.+|..+..+++|++|++++|.. ..+| .+..+++|++|++++| .++.++.....+++|+.|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEEC
Confidence 4555555543 23455666788888899999988654 3366 6777888999998888 56677765554568888888
Q ss_pred ecCCCcCcccccccCCCcccceeeccCCCCCccC---CCCCCCccceeeecCCc
Q 046441 273 YGCERLEALPKGLHNLKSLQELRIGRGVELPSLE---EDGLPTNLHSLEIDGNM 323 (465)
Q Consensus 273 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~ 323 (465)
++|. +..+| .+..+++|++|++++|. +..++ ....+++|++|++++|.
T Consensus 101 ~~N~-l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 101 SYNQ-IASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEE-CCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred cCCc-CCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 8874 55565 57778888888888873 33332 23556777777777776
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.72 E-value=3.3e-10 Score=98.09 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=87.2
Q ss_pred hhhcCCCCCcEEeccccccccccc------cccccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCccccc
Q 046441 211 ERLDNNTSLETISILCCENLKILP------SGLHNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKG 284 (465)
Q Consensus 211 ~~~~~l~~L~~L~l~~~~~~~~l~------~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 284 (465)
..+.....++.++++.+......| ..+..+++|++|++++| .++.++ .+..+++|+.|++++|. +..+|..
T Consensus 12 ~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~ 88 (198)
T 1ds9_A 12 RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENL 88 (198)
T ss_dssp HHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSH
T ss_pred HHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccch
Confidence 335555566666665554444333 47888899999999988 667777 55567789999999985 5577776
Q ss_pred ccCCCcccceeeccCCCCCccCCCCCCCccceeeecCCcccccccc-cccccCCCCCCccEEEecCC
Q 046441 285 LHNLKSLQELRIGRGVELPSLEEDGLPTNLHSLEIDGNMEIWKSTI-EWGRGFHRFSSLRCLAISGC 350 (465)
Q Consensus 285 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~ 350 (465)
+..+++|++|++++| .+..++..+.+++|++|++++|.. ..... .. +..+++|++|++++|
T Consensus 89 ~~~~~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~l~~N~i-~~~~~~~~---l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 89 DAVADTLEELWISYN-QIASLSGIEKLVNLRVLYMSNNKI-TNWGEIDK---LAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHHHCSEEEEEEE-ECCCHHHHHHHHHSSEEEESEEEC-CCHHHHHH---HTTTTTCSEEEECSC
T ss_pred hhcCCcCCEEECcCC-cCCcCCccccCCCCCEEECCCCcC-CchhHHHH---HhcCCCCCEEEecCC
Confidence 777788888988887 344444444556777777777652 22111 11 455667777777765
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.62 E-value=1e-07 Score=80.06 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=37.4
Q ss_pred CCccEEEecCCCChhhh-hhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCC-CCCCCCCCceE
Q 046441 193 PSLKVLDIYGCPKLESI-AERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKL 270 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L 270 (465)
++|++|++++|. +..+ +..+..+++|++|++++|......+..+..+++|++|++++| .++.++. .+..+++|+.|
T Consensus 30 ~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 30 TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEE
Confidence 455666666543 3332 333555555555555554333222223344555555555554 3444433 23334445555
Q ss_pred EEecC
Q 046441 271 RIYGC 275 (465)
Q Consensus 271 ~l~~~ 275 (465)
++++|
T Consensus 108 ~L~~N 112 (170)
T 3g39_A 108 WLLNN 112 (170)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 55444
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.62 E-value=1e-06 Score=84.78 Aligned_cols=213 Identities=15% Similarity=0.114 Sum_probs=135.2
Q ss_pred hhcCCCCCcEEecccccccccc-ccccccCccccEEecccCcccccCCC-CCCCCCCCceEEEecCCCcCcccccccCCC
Q 046441 212 RLDNNTSLETISILCCENLKIL-PSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIYGCERLEALPKGLHNLK 289 (465)
Q Consensus 212 ~~~~l~~L~~L~l~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 289 (465)
.|..|.+|+.+.+..+. ..+ ...+.++++|+.+.+..+ ++.+.. .+..+..|+.+.+... ...+........
T Consensus 157 aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~ 230 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKT 230 (394)
T ss_dssp TTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTC
T ss_pred hhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccC
Confidence 47888999999987532 223 345677889998888753 555554 4455667877766553 223333344556
Q ss_pred cccceeeccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCC
Q 046441 290 SLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTA 367 (465)
Q Consensus 290 ~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~ 367 (465)
+|+.+.+... ...+.. ...+..++.+.+..+.. ..... . +..+..++.+..... . ++.. .
T Consensus 231 ~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~-~--F~~~~~l~~~~~~~~--~---i~~~------~ 292 (394)
T 4fs7_A 231 GVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKL--RIGGS-L--FYNCSGLKKVIYGSV--I---VPEK------T 292 (394)
T ss_dssp CCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTC--EECSC-T--TTTCTTCCEEEECSS--E---ECTT------T
T ss_pred CCceEEECCC--ceecccccccccccceeEEcCCCcc--eeecc-c--cccccccceeccCce--e---eccc------c
Confidence 7888877653 233322 23456788888776532 11111 1 667788888777653 1 1111 1
Q ss_pred CCCccccceEeccCCCCCccccc-cccCCCCcceEEecCCCCCCcCCCCCC--cccccEEeecCCchHHHHHhhcCCCcc
Q 046441 368 LPLPACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGDCPKLKYFPEKGL--PSSLLRLYIDECPLIAEKCRKDGGQYW 444 (465)
Q Consensus 368 ~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~ 444 (465)
+....+|+.+.+.+ +++.++. .+.+|.+|+.+++.+ .++.+....+ +.+|+.+++... ++ ..+..++
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~----~I~~~aF 362 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LR----KIGANAF 362 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CC----EECTTTB
T ss_pred cccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--cc----EehHHHh
Confidence 23456899988875 6888876 678899999999974 5888877655 678888888542 22 2345567
Q ss_pred cccCCcceEeecCc
Q 046441 445 DLLTHIPSVLIDLA 458 (465)
Q Consensus 445 ~~~~~~~~~~~~~~ 458 (465)
.....+..+++...
T Consensus 363 ~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 363 QGCINLKKVELPKR 376 (394)
T ss_dssp TTCTTCCEEEEEGG
T ss_pred hCCCCCCEEEECCC
Confidence 77777777777554
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.61 E-value=1.2e-07 Score=79.90 Aligned_cols=80 Identities=21% Similarity=0.334 Sum_probs=31.8
Q ss_pred CCcEEeccccccccccccccccCccccEEecccCcccccCCCC-CCCCCCCceEEEecCCCcCcccc-cccCCCccccee
Q 046441 218 SLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEG-GLPCAKLSKLRIYGCERLEALPK-GLHNLKSLQELR 295 (465)
Q Consensus 218 ~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~ 295 (465)
+|+.|++++|...+..|..+.++++|++|++++| .++.++.. +..+++|+.|++++|. +..+|. .+..+++|++|+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEE
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEE
Confidence 3444444443322222333444444444444444 33333332 1233444444444432 222322 234444444444
Q ss_pred eccC
Q 046441 296 IGRG 299 (465)
Q Consensus 296 l~~~ 299 (465)
+++|
T Consensus 112 L~~N 115 (174)
T 2r9u_A 112 LYNN 115 (174)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 4444
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.55 E-value=3e-07 Score=77.12 Aligned_cols=101 Identities=22% Similarity=0.348 Sum_probs=80.3
Q ss_pred ccEEEecCCCChhhhhhhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCC-CCCCCCCceEEEe
Q 046441 195 LKVLDIYGCPKLESIAERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEG-GLPCAKLSKLRIY 273 (465)
Q Consensus 195 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~ 273 (465)
.+.++++++. +..+|..+ .++|++|++++|...+..+..+.++++|++|++++| .++.++.. +..+++|+.|+++
T Consensus 11 ~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 4667777743 56666554 378999999998766655777889999999999998 67777774 4678899999999
Q ss_pred cCCCcCcccc-cccCCCcccceeeccCC
Q 046441 274 GCERLEALPK-GLHNLKSLQELRIGRGV 300 (465)
Q Consensus 274 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 300 (465)
+|. +..++. .+..+++|++|++++|.
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 986 555554 58899999999999985
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.52 E-value=4.2e-07 Score=76.50 Aligned_cols=100 Identities=16% Similarity=0.255 Sum_probs=76.9
Q ss_pred CCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhh-hhhhcCCCCCcEEecccccccccccc-c
Q 046441 159 LEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESI-AERLDNNTSLETISILCCENLKILPS-G 236 (465)
Q Consensus 159 L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~l~~-~ 236 (465)
-+.+++++ +.++. ++. .++++|++|++++|. +..+ |..+..+++|++|++++|... .+|. .
T Consensus 14 ~~~l~~~~-n~l~~-iP~-------------~~~~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~ 76 (174)
T 2r9u_A 14 QTLVNCQN-IRLAS-VPA-------------GIPTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGV 76 (174)
T ss_dssp SSEEECCS-SCCSS-CCS-------------CCCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred CcEEEeCC-CCCCc-cCC-------------CcCCCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCC-ccChhH
Confidence 35667776 56655 443 234789999999976 5444 567899999999999997554 4554 4
Q ss_pred cccCccccEEecccCcccccCCCC-CCCCCCCceEEEecCC
Q 046441 237 LHNLRQLQEISIEKCGNLESFPEG-GLPCAKLSKLRIYGCE 276 (465)
Q Consensus 237 ~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~ 276 (465)
+..+++|++|++++| .++.++.. +..+++|+.|++++|.
T Consensus 77 ~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 77 FDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred hCCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCCC
Confidence 678999999999998 77777764 6678899999999986
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.36 E-value=9.8e-07 Score=83.28 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=45.8
Q ss_pred cccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChh----hhhhhhcCCCCCcEEecccccccc
Q 046441 156 SSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLE----SIAERLDNNTSLETISILCCENLK 231 (465)
Q Consensus 156 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~~~~~~ 231 (465)
+|+|+.|.+.+| .+.+ . .+..+... ..+ ++|++|+++.|..-+ .++..+..+++|+.|+++.|....
T Consensus 251 ~p~Lr~L~L~~~-~i~~-~----~~~~la~a--~~~-~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 251 FPNLKWLGIVDA-EEQN-V----VVEMFLES--DIL-PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTCCEEEEESC-TTHH-H----HHHHHHHC--SSG-GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCcCEEeCCCC-CCch-H----HHHHHHhC--ccC-CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 577888888774 3322 0 01111111 223 678999998765322 234445667889999998875433
Q ss_pred ccccccccCccccEEecccC
Q 046441 232 ILPSGLHNLRQLQEISIEKC 251 (465)
Q Consensus 232 ~l~~~~~~~~~L~~L~l~~~ 251 (465)
.....+...- ...++++..
T Consensus 322 ~~~~~l~~al-g~~~~~~~~ 340 (362)
T 2ra8_A 322 EMKKELQKSL-PMKIDVSDS 340 (362)
T ss_dssp HHHHHHHHHC-CSEEECCSB
T ss_pred HHHHHHHHHc-CCEEEecCC
Confidence 2222222100 245666665
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.29 E-value=2.8e-07 Score=76.53 Aligned_cols=97 Identities=20% Similarity=0.269 Sum_probs=66.0
Q ss_pred ccccccccCCCCcEEEecCCCCCCC--CCCCcCcCcccEEEccCCccccccccccccCC---CCCccEEEecCCcCccee
Q 046441 39 KLPQSSLSLSSLREIEICKCSSLVS--FPEVALPSKLKKIRISSCDALKSLPEAWMCDT---NSSLEILEIWICCSLTYI 113 (465)
Q Consensus 39 ~l~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~---~~~L~~L~l~~~~~l~~~ 113 (465)
.+|.....-..|++|++++|. ++. +..+..+++|++|++++|..+++......+.. +++|++|++++|+++++-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred cCCcccCCCceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 445433233568899998884 544 22455688899999999887776554433321 257999999999877764
Q ss_pred cCc--cCCCCccEEeeccccCcccc
Q 046441 114 AGV--QLPRSLKRLHILLCNNIRTL 136 (465)
Q Consensus 114 ~~~--~~~~~L~~L~l~~c~~l~~~ 136 (465)
... ..+++|+.|++++|+.++..
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHHHhcCCCCCEEECCCCCCCCch
Confidence 332 44689999999999888754
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=3.5e-07 Score=76.00 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=58.9
Q ss_pred CcccEEEccCCccccccccccccCCCCCccEEEecCCcCcceecCc--c----CCCCccEEeeccccCcccccccccccc
Q 046441 71 SKLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAGV--Q----LPRSLKRLHILLCNNIRTLTVEEGIQC 144 (465)
Q Consensus 71 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~----~~~~L~~L~l~~c~~l~~~~~~~~~~~ 144 (465)
.+|++|++++|. +++.+.... .++++|++|++++|..+++.... . ..++|+.|++++|.+++.- ++..
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~----Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK----GIIA 134 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH----HHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH----HHHH
Confidence 468888888876 666554433 46688888888888777664433 1 1246888888888877743 2222
Q ss_pred CCCCCCchhhhcccCCeeeccCCCCccc
Q 046441 145 SNSSSSSRRYISSLLEHLEIGNCRSLTC 172 (465)
Q Consensus 145 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 172 (465)
.. .+++|++|++++|+.+++
T Consensus 135 L~--------~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 LH--------HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GG--------GCTTCCEEEEESCTTCCC
T ss_pred Hh--------cCCCCCEEECCCCCCCCc
Confidence 11 157888888888887776
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.26 E-value=7e-05 Score=71.80 Aligned_cols=81 Identities=14% Similarity=0.229 Sum_probs=47.2
Q ss_pred CCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCCccccc-cccCCCCcceEEecCCCCCCcCCC
Q 046441 336 FHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGDCPKLKYFPE 414 (465)
Q Consensus 336 ~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~ 414 (465)
+.++++|+.+.+.. .+..++... +....+|+.+++.+ +++.+.. .+.+|.+|+.+.+.. .++.+..
T Consensus 284 F~~c~~L~~i~l~~---~i~~I~~~a------F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~ 350 (394)
T 4gt6_A 284 FMNCPALQDIEFSS---RITELPESV------FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPE 350 (394)
T ss_dssp TTTCTTCCEEECCT---TCCEECTTT------TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCG
T ss_pred cccccccccccCCC---cccccCcee------ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhH
Confidence 55666666666654 333333321 22345666666654 4666654 566777777777753 4666665
Q ss_pred CCC--cccccEEeecCC
Q 046441 415 KGL--PSSLLRLYIDEC 429 (465)
Q Consensus 415 ~~~--~~~L~~L~l~~c 429 (465)
..+ +++|+.+++.+.
T Consensus 351 ~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp GGGTTCTTCCEEEESSC
T ss_pred hHhhCCCCCCEEEECCc
Confidence 444 567777777664
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.22 E-value=7.7e-08 Score=91.53 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=16.8
Q ss_pred CCCceEEEecCCCcC----cccccccCCCcccceeeccC
Q 046441 265 AKLSKLRIYGCERLE----ALPKGLHNLKSLQELRIGRG 299 (465)
Q Consensus 265 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~ 299 (465)
++|++|++++|..-. .++..+...++|++|++++|
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence 355566665554211 12233344555666666555
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.21 E-value=2e-07 Score=88.69 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=17.8
Q ss_pred hcCCCCCcEEeccccccccc----cccccccCccccEEecccC
Q 046441 213 LDNNTSLETISILCCENLKI----LPSGLHNLRQLQEISIEKC 251 (465)
Q Consensus 213 ~~~l~~L~~L~l~~~~~~~~----l~~~~~~~~~L~~L~l~~~ 251 (465)
+...++|++|++++|..... ++..+...++|++|++++|
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 44444555555555433221 2223333455555555555
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.14 E-value=0.0011 Score=63.50 Aligned_cols=104 Identities=12% Similarity=0.142 Sum_probs=67.0
Q ss_pred cccCCCcccceeeccCCCCCccCC--CCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCccccccccc
Q 046441 284 GLHNLKSLQELRIGRGVELPSLEE--DGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLED 361 (465)
Q Consensus 284 ~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~ 361 (465)
.+..+++|+.+.+... ...++. ...+++|+.+.+... +....... +.+|.+|+.+.+.. .++.+....
T Consensus 260 aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~a---F~~c~~L~~i~lp~---~v~~I~~~a 329 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSSR--ITELPESV---FAGCISLKSIDIPE---GITQILDDA 329 (394)
T ss_dssp TTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTT---TTTCTTCCEEECCT---TCCEECTTT
T ss_pred eeeecccccEEecccc--cceecCcccccccccccccCCCc--ccccCcee---ecCCCCcCEEEeCC---cccEehHhH
Confidence 4566778888877653 223322 234577888887532 22222222 77888999998876 344444322
Q ss_pred ccccCCCCCccccceEeccCCCCCccccc-cccCCCCcceEEecC
Q 046441 362 KRLGTALPLPACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGD 405 (465)
Q Consensus 362 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~ 405 (465)
+....+|+++.+.. +++.+.. .+.+|.+|+.+++.+
T Consensus 330 ------F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 330 ------FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp ------TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred ------hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 33456888888864 6777765 678889999998886
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.14 E-value=4.7e-06 Score=78.53 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=66.9
Q ss_pred CCCCCCccEEEecCCCChhhhh-hhhcCCCCCcEEeccccccccccccccccCccccEEecccCcccccCCCCCCCCCCC
Q 046441 189 GNLPPSLKVLDIYGCPKLESIA-ERLDNNTSLETISILCCENLKILPSGLHNLRQLQEISIEKCGNLESFPEGGLPCAKL 267 (465)
Q Consensus 189 ~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L 267 (465)
..+ ++|+.|++++++.+..++ ..|..+++|+.|++++|...+..|..+.++++|++|++++| .+..++...+...+|
T Consensus 28 ~~~-~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L 105 (347)
T 2ifg_A 28 PGA-ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSL 105 (347)
T ss_dssp CSC-SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCC
T ss_pred CCC-CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCc
Confidence 444 679999998634466665 45889999999999998665555667888999999999998 677787755443359
Q ss_pred ceEEEecCCC
Q 046441 268 SKLRIYGCER 277 (465)
Q Consensus 268 ~~L~l~~~~~ 277 (465)
+.|++.+|..
T Consensus 106 ~~l~l~~N~~ 115 (347)
T 2ifg_A 106 QELVLSGNPL 115 (347)
T ss_dssp CEEECCSSCC
T ss_pred eEEEeeCCCc
Confidence 9999998763
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=1.7e-06 Score=81.71 Aligned_cols=140 Identities=19% Similarity=0.139 Sum_probs=65.4
Q ss_pred ccCccccEEecccCcccccCCCCCCCCCCCceEEEecCCCcCcccccc--cCCCcccceeeccCC-------CCCc---c
Q 046441 238 HNLRQLQEISIEKCGNLESFPEGGLPCAKLSKLRIYGCERLEALPKGL--HNLKSLQELRIGRGV-------ELPS---L 305 (465)
Q Consensus 238 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~-------~~~~---~ 305 (465)
..+|+|+.|.++++..+ .++. . ..++|++|++..|.........+ ..+++|++|+++.+. .+.. .
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 34556666666555222 1222 1 24566677666554211111122 246667777664210 0111 1
Q ss_pred CCCCCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCCccccceEeccCCCCC
Q 046441 306 EEDGLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGNFPNL 385 (465)
Q Consensus 306 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 385 (465)
...+.+++|++|++.+|.........+.+ ...+++|++|+++.| .+..... ..+...+..+++|+.|++++| .+
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~-a~~~~~L~~LdLs~n--~L~d~G~--~~L~~~L~~l~~L~~L~L~~n-~i 319 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLE-SDILPQLETMDISAG--VLTDEGA--RLLLDHVDKIKHLKFINMKYN-YL 319 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHH-CSSGGGCSEEECCSS--CCBHHHH--HHHHTTHHHHTTCSEEECCSB-BC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHh-CccCCCCCEEECCCC--CCChHHH--HHHHhhcccCCcceEEECCCC-cC
Confidence 11134678888888777643322211110 124678888888775 3332100 000001113467888888774 44
Q ss_pred c
Q 046441 386 E 386 (465)
Q Consensus 386 ~ 386 (465)
.
T Consensus 320 ~ 320 (362)
T 2ra8_A 320 S 320 (362)
T ss_dssp C
T ss_pred C
Confidence 4
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.05 E-value=1.2e-05 Score=75.72 Aligned_cols=101 Identities=25% Similarity=0.230 Sum_probs=75.2
Q ss_pred cEEEecCCCChhhhhhhhcCCCCCcEEecccccccccc-ccccccCccccEEecccCcccccCCC-CCCCCCCCceEEEe
Q 046441 196 KVLDIYGCPKLESIAERLDNNTSLETISILCCENLKIL-PSGLHNLRQLQEISIEKCGNLESFPE-GGLPCAKLSKLRIY 273 (465)
Q Consensus 196 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~ 273 (465)
..++.+++..+..+|. +..+++|+.|++++++.+..+ +..+.++++|++|++++| .++.++. .+..+++|+.|+++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCC
Confidence 3567777536788888 899999999999863444444 467888999999999998 6666665 45668899999999
Q ss_pred cCCCcCcccccc-cCCCcccceeeccCC
Q 046441 274 GCERLEALPKGL-HNLKSLQELRIGRGV 300 (465)
Q Consensus 274 ~~~~~~~~~~~~-~~l~~L~~L~l~~~~ 300 (465)
+|. +..+|..+ ..++ |+.|++.+|.
T Consensus 89 ~N~-l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 89 FNA-LESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp SSC-CSCCCSTTTCSCC-CCEEECCSSC
T ss_pred CCc-cceeCHHHcccCC-ceEEEeeCCC
Confidence 986 55665443 4444 9999998874
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.00 E-value=0.002 Score=61.22 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=29.1
Q ss_pred ccccCCCCcEEEecCCCCCCCCC--CCcCcCcccEEEccCCccccccccccccCCCCCccEEEe
Q 046441 43 SSLSLSSLREIEICKCSSLVSFP--EVALPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEI 104 (465)
Q Consensus 43 ~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 104 (465)
|+....+|+.+.+.. +++.++ .+..|.+|+.+.+.. .++.++..... . .+|+.+.+
T Consensus 41 ~~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~-~-c~l~~i~~ 98 (379)
T 4h09_A 41 WYKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFA-D-TKLQSYTG 98 (379)
T ss_dssp TGGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTT-T-CCCCEEEE
T ss_pred ccccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC--cceEechhhhc-C-CCCceEEC
Confidence 344556677777653 455554 233466777777754 25555544221 1 24555544
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.95 E-value=0.0033 Score=59.65 Aligned_cols=287 Identities=14% Similarity=0.154 Sum_probs=135.5
Q ss_pred CcCcccEEEccCCccccccccccccCCCCCccEEEecCCcCcceecCccCC-CCccEEeeccccCccccccccccccCCC
Q 046441 69 LPSKLKKIRISSCDALKSLPEAWMCDTNSSLEILEIWICCSLTYIAGVQLP-RSLKRLHILLCNNIRTLTVEEGIQCSNS 147 (465)
Q Consensus 69 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 147 (465)
...+|+.+.+.. +++.++... +..+.+|+.+.+.. .++.++...+. .+|+.+.+- .+++.+ +.....
T Consensus 44 ~~~~i~~v~ip~--~vt~Ig~~a-F~~C~~L~~I~lp~--~v~~Ig~~aF~~c~l~~i~~~--~~l~~I--~~~aF~--- 111 (379)
T 4h09_A 44 DRDRISEVRVNS--GITSIGEAN-FNSCYNMTKVTVAS--TVTSIGDGAFADTKLQSYTGM--ERVKKF--GDYVFQ--- 111 (379)
T ss_dssp GGGGCSEEEECT--TEEEECTTT-TTTCTTCCEEEECT--TCCEECTTTTTTCCCCEEEEC--TTCCEE--CTTTTT---
T ss_pred cccCCEEEEeCC--CccChHHHH-hhCCCCCCEEEeCC--cceEechhhhcCCCCceEECC--ceeeEe--ccceec---
Confidence 467899999976 478887663 35678999999964 47777665442 245555443 234444 322222
Q ss_pred CCCchhhhcccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChhhhh-hhhcCCCCCcEEeccc
Q 046441 148 SSSSRRYISSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLESIA-ERLDNNTSLETISILC 226 (465)
Q Consensus 148 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~ 226 (465)
..+|+.+.+.. .+.. ++...+ .. .+++.+.+... +..+. ..+..+.+++...+..
T Consensus 112 --------~~~L~~i~lp~--~~~~-i~~~~F---------~~--~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 112 --------GTDLDDFEFPG--ATTE-IGNYIF---------YN--SSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp --------TCCCSEEECCT--TCCE-ECTTTT---------TT--CCCCEEEECTT--CCEECSCTTTTCTTCCEEEECT
T ss_pred --------cCCcccccCCC--cccc-cccccc---------cc--ceeeeeeccce--eeccccchhccccccccccccc
Confidence 24577776653 2222 221111 11 23455544431 22221 2245566666666554
Q ss_pred cccccc------------cccccccCccccEEecccCcccccCC-CCCCCCCCCceEEEecCCCcCccc-ccccCCCccc
Q 046441 227 CENLKI------------LPSGLHNLRQLQEISIEKCGNLESFP-EGGLPCAKLSKLRIYGCERLEALP-KGLHNLKSLQ 292 (465)
Q Consensus 227 ~~~~~~------------l~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~ 292 (465)
...... ....+.....+..+.+... ...+. .....+.+++.+.+... +..+. ..+..+..|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~ 243 (379)
T 4h09_A 168 NNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST--VKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALD 243 (379)
T ss_dssp TCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT--CCEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCC
T ss_pred ccceeecccceecccccceeccccccccccccccccc--eeEEeecccccccccceeeeccc--eeEEccccccCCccce
Confidence 322111 0111222333444333321 11111 23333445666655432 22222 2345556666
Q ss_pred ceeeccCCCCCccCCC--CCCCccceeeecCCcccccccccccccCCCCCCccEEEecCCCCcccccccccccccCCCCC
Q 046441 293 ELRIGRGVELPSLEED--GLPTNLHSLEIDGNMEIWKSTIEWGRGFHRFSSLRCLAISGCDDDMVSFPLEDKRLGTALPL 370 (465)
Q Consensus 293 ~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~ 370 (465)
.+.+..+ +..++.. ..+.+|+.+.+... +....... +.++++|+.+.+.++ .++.+.... +..
T Consensus 244 ~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~a---F~~c~~L~~i~l~~~--~i~~I~~~a------F~~ 308 (379)
T 4h09_A 244 EIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLL---CSGCSNLTKVVMDNS--AIETLEPRV------FMD 308 (379)
T ss_dssp EEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTT---TTTCTTCCEEEECCT--TCCEECTTT------TTT
T ss_pred EEEcCCC--ccEeCccccceeehhcccccccc--ceeccccc---ccccccccccccccc--ccceehhhh------hcC
Confidence 6666543 3333221 23445666665432 11111111 556667777776653 344443321 223
Q ss_pred ccccceEeccCCCCCccccc-cccCCCCcceEEecCCCCCCcCCC
Q 046441 371 PACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGDCPKLKYFPE 414 (465)
Q Consensus 371 ~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~ 414 (465)
..+|+.+++.. +++.+.. .+.+|.+|+++.+.. .++.+..
T Consensus 309 c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 309 CVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIES 349 (379)
T ss_dssp CTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECT
T ss_pred CCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEch
Confidence 45666666653 4555554 455666666665543 3444443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.23 E-value=0.0004 Score=62.08 Aligned_cols=37 Identities=11% Similarity=-0.015 Sum_probs=16.3
Q ss_pred cccccceeecccCCCCc--ccccccccCCCCcEEEecCC
Q 046441 22 LSCRLEYLRLRYCEGLV--KLPQSSLSLSSLREIEICKC 58 (465)
Q Consensus 22 ~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~~ 58 (465)
.+++|+.|+|++|..-. .++..++.+++|+.|+|++|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 34455555555544311 22233344455555555444
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.17 E-value=0.00015 Score=61.41 Aligned_cols=59 Identities=22% Similarity=0.298 Sum_probs=27.7
Q ss_pred CCccEEEecCCCChh-----hhhhhhcCCCCCcEEeccccccccc----cccccccCccccEEecccC
Q 046441 193 PSLKVLDIYGCPKLE-----SIAERLDNNTSLETISILCCENLKI----LPSGLHNLRQLQEISIEKC 251 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~-----~~~~~~~~l~~L~~L~l~~~~~~~~----l~~~~~~~~~L~~L~l~~~ 251 (465)
++|++|++++|..+. .+...+...++|++|++++|..-.. +...+...++|++|++++|
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 456666666551221 1233344555666666665543221 2223333455555555555
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.08 E-value=0.00016 Score=61.16 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=57.2
Q ss_pred cccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChh----hhhhhhcCCCCCcEEecccccccc
Q 046441 156 SSLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLE----SIAERLDNNTSLETISILCCENLK 231 (465)
Q Consensus 156 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~~~~~~ 231 (465)
.++|++|+++++..+.+ .....+...+ ... ++|++|++++|..-+ .+...+...++|++|++++|..-.
T Consensus 35 ~~~L~~L~L~~n~~i~~-~g~~~l~~~L-----~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPV-PTLKACAEAL-----KTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp CTTCCEEECTTCTTCCH-HHHHHHHHHH-----TTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred CCCCCEEEecCCCCCCH-HHHHHHHHHH-----HhC-CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 46788888888536554 2222222333 222 679999999976332 244456677889999999876543
Q ss_pred c----cccccccCccccEEec--ccC
Q 046441 232 I----LPSGLHNLRQLQEISI--EKC 251 (465)
Q Consensus 232 ~----l~~~~~~~~~L~~L~l--~~~ 251 (465)
. +...+...+.|++|++ ++|
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCC
Confidence 2 3455666778888888 555
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.71 E-value=0.00062 Score=60.79 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=43.3
Q ss_pred cCCCCCcEEecccccccc--ccccccccCccccEEecccCcccccCCC--CCCCCCCCceEEEecCCCcCccc-------
Q 046441 214 DNNTSLETISILCCENLK--ILPSGLHNLRQLQEISIEKCGNLESFPE--GGLPCAKLSKLRIYGCERLEALP------- 282 (465)
Q Consensus 214 ~~l~~L~~L~l~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~~~~~~~~~------- 282 (465)
..+++|+.|++++|...+ .++..+..+++|+.|++++| .++.+.. .+..+ +|++|++++|+....+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 456777777777765443 33444556777777777776 4444321 11112 56666666665433332
Q ss_pred ccccCCCccccee
Q 046441 283 KGLHNLKSLQELR 295 (465)
Q Consensus 283 ~~~~~l~~L~~L~ 295 (465)
..+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1244556666553
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.41 E-value=0.21 Score=38.86 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=25.6
Q ss_pred CccccceEeccCCCCCccccc-cccCCCCcceEEecCC
Q 046441 370 LPACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGDC 406 (465)
Q Consensus 370 ~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c 406 (465)
.+++|++|++++ |+|+.++. .+..+++|++|++.++
T Consensus 29 lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 29 FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCC
Confidence 455777777777 67777766 5566777777777774
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.20 E-value=0.24 Score=38.54 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=17.0
Q ss_pred CccEEEecCCCCcccccccccccccCCCCCccccceEeccC
Q 046441 341 SLRCLAISGCDDDMVSFPLEDKRLGTALPLPACLASLMIGN 381 (465)
Q Consensus 341 ~L~~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 381 (465)
+|++|++++| .+..++... +..+++|++|++.+
T Consensus 32 ~l~~L~Ls~N--~l~~l~~~~------f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 32 DTTELVLTGN--NLTALPPGL------LDALPALRTAHLGA 64 (130)
T ss_dssp TCSEEECTTS--CCSSCCTTT------GGGCTTCCEEECCS
T ss_pred CCCEEECCCC--cCCccChhh------hhhccccCEEEecC
Confidence 5666666665 555554422 12344566666655
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.05 E-value=0.1 Score=43.88 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=28.1
Q ss_pred CCccEEEecCCCChh-----hhhhhhcCCCCCcEEeccccccccc----cccccccCccccEEecccC
Q 046441 193 PSLKVLDIYGCPKLE-----SIAERLDNNTSLETISILCCENLKI----LPSGLHNLRQLQEISIEKC 251 (465)
Q Consensus 193 ~~L~~L~l~~~~~l~-----~~~~~~~~l~~L~~L~l~~~~~~~~----l~~~~~~~~~L~~L~l~~~ 251 (465)
++|+.|++.++..+. .+-..+..-..|+.|++++|..-.. +.+.+..-+.|++|++++|
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 356666665532221 1233344455566666665443221 2233334455666666655
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.52 E-value=0.37 Score=40.48 Aligned_cols=88 Identities=10% Similarity=0.084 Sum_probs=54.2
Q ss_pred ccCCeeeccCCCCccccccCCCcchhhhhcccCCCCCCccEEEecCCCChh----hhhhhhcCCCCCcEEeccccccccc
Q 046441 157 SLLEHLEIGNCRSLTCIFSKNELPATLESLEVGNLPPSLKVLDIYGCPKLE----SIAERLDNNTSLETISILCCENLKI 232 (465)
Q Consensus 157 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~~~~~~~ 232 (465)
+.|++|++++.+.+.+ -+...+...+.. - +.|+.|++.+|..-+ .+...+..-+.|++|++++|..-..
T Consensus 41 ~~L~~L~L~~nn~igd-~ga~~la~aL~~-----N-~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSK-ERIRSLIEAACN-----S-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp SSCCEEECTTCCSSCH-HHHHHHHHHHTT-----C-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred CCccEEECCCCCCCCH-HHHHHHHHHHhh-----C-CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 5688888876435544 222222233321 1 679999999876332 2344456678899999998765432
Q ss_pred ----cccccccCccccEEecccC
Q 046441 233 ----LPSGLHNLRQLQEISIEKC 251 (465)
Q Consensus 233 ----l~~~~~~~~~L~~L~l~~~ 251 (465)
+.+.+..-+.|++|+++++
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCC
Confidence 3445555667888888754
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.92 E-value=66 Score=23.14 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=23.1
Q ss_pred CccccceEeccCCCCCccccc-cccCCCCcceEEecC
Q 046441 370 LPACLASLMIGNFPNLERLSS-SIVDLQNLTELYLGD 405 (465)
Q Consensus 370 ~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~ 405 (465)
...+|+++.+-. +++.+.. .|.+|.+|+.+.+.+
T Consensus 18 ~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 455677776664 5666654 567788888888776
Done!