Query 046442
Match_columns 195
No_of_seqs 191 out of 1356
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 12:09:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13463 phosphatase PhoE; Pro 100.0 5.9E-41 1.3E-45 250.8 14.6 155 17-195 1-160 (203)
2 PRK14116 gpmA phosphoglyceromu 100.0 1.5E-40 3.4E-45 252.4 16.9 161 18-195 1-191 (228)
3 PRK14119 gpmA phosphoglyceromu 100.0 3.2E-40 7E-45 250.8 16.1 161 18-195 1-191 (228)
4 PRK15004 alpha-ribazole phosph 100.0 5.8E-40 1.3E-44 244.9 15.0 153 19-195 1-158 (199)
5 PRK01295 phosphoglyceromutase; 100.0 1.7E-39 3.8E-44 243.1 16.7 161 17-195 1-167 (206)
6 PRK14117 gpmA phosphoglyceromu 100.0 2.9E-39 6.3E-44 245.6 16.3 161 18-195 1-191 (230)
7 PRK14118 gpmA phosphoglyceromu 100.0 4E-39 8.6E-44 244.5 16.4 160 19-195 1-190 (227)
8 PRK03482 phosphoglycerate muta 100.0 6.3E-39 1.4E-43 242.1 17.0 154 18-195 1-159 (215)
9 PRK14120 gpmA phosphoglyceromu 100.0 9E-39 2E-43 244.8 16.5 162 16-195 2-192 (249)
10 PRK13462 acid phosphatase; Pro 100.0 1.1E-38 2.4E-43 238.1 16.0 154 16-195 3-156 (203)
11 PRK01112 phosphoglyceromutase; 100.0 1E-38 2.3E-43 241.9 15.2 160 18-195 1-190 (228)
12 TIGR03162 ribazole_cobC alpha- 100.0 4E-38 8.6E-43 231.0 14.3 150 21-195 1-154 (177)
13 PRK14115 gpmA phosphoglyceromu 100.0 8.3E-38 1.8E-42 239.5 16.5 160 19-195 1-190 (247)
14 TIGR03848 MSMEG_4193 probable 100.0 1.1E-37 2.3E-42 233.6 16.5 158 20-195 1-161 (204)
15 TIGR01258 pgm_1 phosphoglycera 100.0 8.4E-38 1.8E-42 239.2 16.1 160 19-195 1-190 (245)
16 COG0406 phoE Broad specificity 100.0 1.3E-37 2.7E-42 233.9 16.1 157 17-195 1-162 (208)
17 PRK07238 bifunctional RNase H/ 100.0 2.2E-36 4.7E-41 245.2 17.5 160 13-195 166-329 (372)
18 smart00855 PGAM Phosphoglycera 100.0 6.3E-36 1.4E-40 214.9 16.0 154 20-193 1-155 (155)
19 PF00300 His_Phos_1: Histidine 100.0 4.5E-36 9.8E-41 215.7 12.0 153 20-193 1-158 (158)
20 KOG0235 Phosphoglycerate mutas 100.0 1.5E-34 3.3E-39 212.9 13.8 162 17-195 4-173 (214)
21 PTZ00322 6-phosphofructo-2-kin 100.0 3.2E-33 6.8E-38 240.6 13.7 158 17-195 418-594 (664)
22 COG0588 GpmA Phosphoglycerate 100.0 1.9E-31 4.2E-36 193.0 11.5 161 18-195 1-191 (230)
23 PTZ00123 phosphoglycerate muta 100.0 9.9E-31 2.2E-35 199.5 13.9 148 31-195 1-178 (236)
24 PTZ00122 phosphoglycerate muta 100.0 3.4E-27 7.3E-32 185.0 15.6 144 18-195 102-249 (299)
25 cd07067 HP_PGM_like Histidine 99.9 5.8E-26 1.3E-30 162.6 12.8 116 20-195 1-116 (153)
26 KOG4754 Predicted phosphoglyce 99.9 1.3E-24 2.7E-29 157.2 13.2 166 14-194 10-196 (248)
27 cd07040 HP Histidine phosphata 99.9 8.3E-23 1.8E-27 145.9 12.4 116 20-195 1-116 (153)
28 KOG3734 Predicted phosphoglyce 99.9 1.7E-21 3.8E-26 147.8 13.8 164 15-193 9-209 (272)
29 TIGR00249 sixA phosphohistidin 99.9 3.6E-21 7.7E-26 137.5 14.5 68 19-98 1-68 (152)
30 PRK06193 hypothetical protein; 99.9 5.2E-21 1.1E-25 141.7 14.4 128 17-194 41-171 (206)
31 PRK10848 phosphohistidine phos 99.9 3.8E-20 8.1E-25 133.0 14.3 68 19-98 1-68 (159)
32 KOG0234 Fructose-6-phosphate 2 99.8 4.2E-20 9.2E-25 147.8 12.1 151 15-194 236-391 (438)
33 PRK15416 lipopolysaccharide co 99.8 1.2E-19 2.7E-24 133.3 12.2 114 18-194 54-167 (201)
34 COG2062 SixA Phosphohistidine 99.8 2.3E-18 4.9E-23 122.5 13.0 71 18-98 1-71 (163)
35 KOG4609 Predicted phosphoglyce 99.8 2E-18 4.4E-23 125.3 8.8 142 17-195 93-234 (284)
36 cd07061 HP_HAP_like Histidine 98.5 3.4E-07 7.4E-12 70.2 7.3 66 19-98 4-74 (242)
37 PF00328 His_Phos_2: Histidine 98.0 1.8E-05 3.9E-10 63.3 7.2 52 47-98 62-117 (347)
38 PRK10173 glucose-1-phosphatase 97.6 0.00052 1.1E-08 56.7 9.5 82 16-97 30-128 (413)
39 PRK10172 phosphoanhydride phos 97.6 0.0012 2.6E-08 54.7 11.3 83 15-97 32-130 (436)
40 KOG3720 Lysosomal & prostatic 97.5 0.00052 1.1E-08 56.8 8.3 79 16-97 33-127 (411)
41 KOG1057 Arp2/3 complex-interac 95.8 0.013 2.8E-07 51.2 4.4 53 46-98 510-572 (1018)
42 KOG1382 Multiple inositol poly 91.4 0.56 1.2E-05 39.1 5.7 54 45-99 130-184 (467)
43 TIGR02935 probable nitrogen fi 73.7 4 8.6E-05 28.5 2.8 76 115-194 17-92 (140)
44 PLN02517 phosphatidylcholine-s 70.3 9.1 0.0002 33.5 4.7 35 144-188 188-222 (642)
45 KOG3672 Histidine acid phospha 68.7 18 0.0004 29.9 5.9 50 47-96 168-225 (487)
46 PF09370 TIM-br_sig_trns: TIM- 67.8 5.7 0.00012 30.9 2.8 36 144-191 190-225 (268)
47 PF12641 Flavodoxin_3: Flavodo 60.9 48 0.001 23.8 6.4 38 77-114 2-40 (160)
48 TIGR00824 EIIA-man PTS system, 58.4 23 0.0005 23.8 4.2 21 142-162 35-55 (116)
49 PF14606 Lipase_GDSL_3: GDSL-l 58.4 11 0.00023 27.7 2.7 33 146-188 71-103 (178)
50 cd07397 MPP_DevT Myxococcus xa 55.7 19 0.00041 27.7 3.7 35 145-192 126-160 (238)
51 KOG2369 Lecithin:cholesterol a 53.1 24 0.00053 29.9 4.2 38 143-190 156-193 (473)
52 COG1134 TagH ABC-type polysacc 52.8 38 0.00082 26.2 4.9 30 149-190 180-209 (249)
53 TIGR03729 acc_ester putative p 51.3 47 0.001 25.2 5.4 38 144-191 140-177 (239)
54 PF13422 DUF4110: Domain of un 51.2 33 0.00072 22.4 3.8 28 138-165 8-35 (96)
55 PF02450 LCAT: Lecithin:choles 49.4 26 0.00055 29.0 3.9 31 147-188 98-128 (389)
56 TIGR01552 phd_fam prevent-host 48.5 28 0.00061 19.3 2.9 31 147-190 3-33 (52)
57 COG3845 ABC-type uncharacteriz 46.9 1.2E+02 0.0026 26.1 7.3 86 82-187 113-199 (501)
58 PF12048 DUF3530: Protein of u 46.8 35 0.00076 27.3 4.2 15 176-190 190-204 (310)
59 PF07819 PGAP1: PGAP1-like pro 46.7 45 0.00097 25.3 4.6 39 145-188 56-94 (225)
60 cd04256 AAK_P5CS_ProBA AAK_P5C 43.8 40 0.00087 26.6 4.0 14 177-190 46-59 (284)
61 PF04270 Strep_his_triad: Stre 39.6 19 0.00041 20.7 1.2 30 20-59 20-49 (53)
62 COG1116 TauB ABC-type nitrate/ 38.6 63 0.0014 25.0 4.2 26 152-188 166-191 (248)
63 PF03610 EIIA-man: PTS system 38.5 75 0.0016 21.0 4.3 30 143-185 35-64 (116)
64 PF13479 AAA_24: AAA domain 38.5 73 0.0016 23.7 4.6 33 145-188 105-137 (213)
65 COG1136 SalX ABC-type antimicr 37.8 73 0.0016 24.4 4.4 30 152-192 178-207 (226)
66 PF01764 Lipase_3: Lipase (cla 37.0 82 0.0018 21.2 4.4 28 150-187 45-72 (140)
67 PF02604 PhdYeFM_antitox: Anti 36.0 31 0.00067 20.8 1.9 32 147-190 5-36 (75)
68 KOG4132 Uroporphyrinogen III s 34.3 41 0.00088 25.8 2.5 43 46-95 33-75 (260)
69 COG1117 PstB ABC-type phosphat 33.7 52 0.0011 25.3 3.0 13 177-189 197-209 (253)
70 smart00195 DSPc Dual specifici 32.5 94 0.002 21.0 4.1 35 145-191 57-91 (138)
71 COG4118 Phd Antitoxin of toxin 32.1 87 0.0019 19.8 3.5 31 147-190 6-36 (84)
72 COG0529 CysC Adenylylsulfate k 31.9 2.2E+02 0.0047 21.2 8.0 69 45-121 69-141 (197)
73 PRK12314 gamma-glutamyl kinase 31.8 79 0.0017 24.7 3.9 13 177-189 46-58 (266)
74 COG4598 HisP ABC-type histidin 30.9 2.3E+02 0.005 21.3 6.9 125 44-189 76-213 (256)
75 TIGR01166 cbiO cobalt transpor 30.5 95 0.0021 22.4 4.0 25 152-188 163-187 (190)
76 cd00006 PTS_IIA_man PTS_IIA, P 28.8 1.5E+02 0.0033 19.8 4.5 20 143-162 35-54 (122)
77 COG1416 Uncharacterized conser 28.7 1.4E+02 0.0031 20.0 4.1 19 176-194 30-48 (112)
78 PF06180 CbiK: Cobalt chelatas 27.7 33 0.00071 26.8 1.2 35 146-189 118-152 (262)
79 PF14987 NADHdh_A3: NADH dehyd 26.9 69 0.0015 20.0 2.2 23 152-187 2-24 (84)
80 cd03238 ABC_UvrA The excision 26.7 1.3E+02 0.0028 21.8 4.1 14 177-190 138-151 (176)
81 COG5564 Predicted TIM-barrel e 26.5 95 0.0021 23.8 3.3 35 145-191 197-231 (276)
82 COG0693 ThiJ Putative intracel 26.3 1.3E+02 0.0027 21.8 4.0 37 142-190 72-111 (188)
83 cd03255 ABC_MJ0796_Lo1CDE_FtsE 24.9 1.5E+02 0.0033 21.8 4.4 12 178-189 191-202 (218)
84 cd03293 ABC_NrtD_SsuB_transpor 24.8 1.6E+02 0.0034 21.8 4.4 13 177-189 181-193 (220)
85 COG4525 TauB ABC-type taurine 24.6 1.3E+02 0.0029 22.9 3.7 26 152-188 168-193 (259)
86 PF01965 DJ-1_PfpI: DJ-1/PfpI 24.5 86 0.0019 21.7 2.8 37 142-190 43-83 (147)
87 PF00782 DSPc: Dual specificit 24.3 78 0.0017 21.2 2.5 36 145-192 52-87 (133)
88 TIGR02673 FtsE cell division A 24.3 1.4E+02 0.0031 21.9 4.1 12 178-189 187-198 (214)
89 cd03216 ABC_Carb_Monos_I This 24.2 1.5E+02 0.0033 20.8 4.1 12 178-189 132-143 (163)
90 cd03237 ABC_RNaseL_inhibitor_d 23.8 2.1E+02 0.0045 21.9 5.0 28 152-190 151-178 (246)
91 cd03235 ABC_Metallic_Cations A 23.6 1.5E+02 0.0032 21.8 4.1 13 177-189 181-193 (213)
92 PRK04946 hypothetical protein; 23.5 2.6E+02 0.0056 20.6 5.1 32 144-187 101-132 (181)
93 COG4107 PhnK ABC-type phosphon 23.4 1.9E+02 0.004 21.6 4.3 40 143-193 178-217 (258)
94 COG4586 ABC-type uncharacteriz 23.3 1.3E+02 0.0029 24.0 3.7 28 151-189 191-218 (325)
95 cd03226 ABC_cobalt_CbiO_domain 23.0 1.6E+02 0.0034 21.5 4.1 13 177-189 175-187 (205)
96 cd03292 ABC_FtsE_transporter F 23.0 1.5E+02 0.0033 21.7 4.0 12 178-189 186-197 (214)
97 cd03229 ABC_Class3 This class 22.9 1.9E+02 0.0041 20.7 4.4 12 178-189 151-162 (178)
98 cd03261 ABC_Org_Solvent_Resist 22.8 1.7E+02 0.0036 21.9 4.3 12 178-189 187-198 (235)
99 TIGR02315 ABC_phnC phosphonate 22.7 1.7E+02 0.0037 22.0 4.4 12 178-189 196-207 (243)
100 cd03296 ABC_CysA_sulfate_impor 22.7 1.8E+02 0.0039 21.9 4.4 12 178-189 187-198 (239)
101 TIGR00960 3a0501s02 Type II (G 22.6 1.6E+02 0.0035 21.7 4.1 12 178-189 188-199 (216)
102 cd03259 ABC_Carb_Solutes_like 22.6 1.8E+02 0.004 21.3 4.4 27 152-189 166-192 (213)
103 cd03225 ABC_cobalt_CbiO_domain 22.6 1.6E+02 0.0035 21.6 4.1 12 178-189 184-195 (211)
104 TIGR01092 P5CS delta l-pyrroli 22.5 1.3E+02 0.0028 27.3 4.0 14 177-190 44-57 (715)
105 PTZ00489 glutamate 5-kinase; P 22.3 1.4E+02 0.0031 23.3 3.8 13 178-190 44-56 (264)
106 PRK11614 livF leucine/isoleuci 22.1 1.6E+02 0.0035 22.1 4.1 12 177-188 186-197 (237)
107 PF07425 Pardaxin: Pardaxin; 22.0 24 0.00052 17.2 -0.3 17 77-93 8-24 (33)
108 TIGR03608 L_ocin_972_ABC putat 22.0 1.7E+02 0.0037 21.3 4.1 13 178-190 184-196 (206)
109 COG1121 ZnuC ABC-type Mn/Zn tr 21.9 1.4E+02 0.003 23.3 3.6 12 177-188 188-199 (254)
110 cd03222 ABC_RNaseL_inhibitor T 21.8 2.1E+02 0.0046 20.7 4.5 13 178-190 122-134 (177)
111 KOG3724 Negative regulator of 21.8 1.9E+02 0.004 26.8 4.7 43 144-187 148-190 (973)
112 PLN02733 phosphatidylcholine-s 21.7 2.2E+02 0.0048 24.2 5.1 31 148-188 141-171 (440)
113 cd03258 ABC_MetN_methionine_tr 21.6 1.9E+02 0.0041 21.6 4.3 12 178-189 191-202 (233)
114 cd03256 ABC_PhnC_transporter A 21.6 1.9E+02 0.0042 21.6 4.4 12 178-189 195-206 (241)
115 TIGR01189 ccmA heme ABC export 21.5 1.8E+02 0.0038 21.2 4.1 12 177-188 176-187 (198)
116 cd03230 ABC_DR_subfamily_A Thi 21.4 1.7E+02 0.0036 20.8 3.9 12 178-189 145-156 (173)
117 PRK13540 cytochrome c biogenes 21.4 1.8E+02 0.0039 21.2 4.1 13 177-189 176-188 (200)
118 TIGR02211 LolD_lipo_ex lipopro 21.4 1.9E+02 0.0042 21.3 4.3 12 178-189 192-203 (221)
119 PRK13539 cytochrome c biogenes 21.3 1.7E+02 0.0036 21.5 3.9 12 177-188 176-187 (207)
120 PRK00035 hemH ferrochelatase; 21.3 4.4E+02 0.0094 21.2 8.2 16 177-192 188-203 (333)
121 PRK13543 cytochrome c biogenes 21.3 1.7E+02 0.0038 21.6 4.1 13 177-189 186-198 (214)
122 PF11288 DUF3089: Protein of u 21.2 1.5E+02 0.0033 22.3 3.6 28 152-188 77-104 (207)
123 cd03231 ABC_CcmA_heme_exporter 21.1 1.8E+02 0.0039 21.2 4.0 12 177-188 174-185 (201)
124 cd03262 ABC_HisP_GlnQ_permease 21.1 1.9E+02 0.004 21.2 4.2 26 152-189 171-196 (213)
125 cd03267 ABC_NatA_like Similar 21.0 2E+02 0.0043 21.7 4.4 13 177-189 203-215 (236)
126 PRK11248 tauB taurine transpor 21.0 2E+02 0.0043 22.1 4.4 13 177-189 178-190 (255)
127 PRK10771 thiQ thiamine transpo 21.0 2E+02 0.0044 21.5 4.4 12 178-189 180-191 (232)
128 cd03257 ABC_NikE_OppD_transpor 20.8 2E+02 0.0043 21.3 4.3 12 178-189 196-207 (228)
129 TIGR00109 hemH ferrochelatase. 20.8 2.1E+02 0.0045 23.1 4.5 43 45-94 69-114 (322)
130 PF12500 TRSP: TRSP domain C t 20.7 2E+02 0.0043 20.6 3.9 16 177-192 56-71 (155)
131 PF07897 DUF1675: Protein of u 20.6 51 0.0011 26.1 1.0 15 177-191 249-263 (284)
132 COG0488 Uup ATPase components 20.6 1E+02 0.0023 26.8 3.0 32 146-188 179-210 (530)
133 TIGR01184 ntrCD nitrate transp 20.6 2.1E+02 0.0045 21.4 4.4 12 178-189 165-176 (230)
134 cd03232 ABC_PDR_domain2 The pl 20.6 1.9E+02 0.0042 20.9 4.1 11 178-188 158-168 (192)
135 cd03297 ABC_ModC_molybdenum_tr 20.5 2.1E+02 0.0046 21.0 4.4 12 178-189 182-193 (214)
136 TIGR02769 nickel_nikE nickel i 20.5 2E+02 0.0043 22.1 4.3 28 152-190 186-213 (265)
137 TIGR01618 phage_P_loop phage n 20.2 2.1E+02 0.0046 21.7 4.3 30 147-188 114-143 (220)
138 PF07431 DUF1512: Protein of u 20.1 97 0.0021 25.4 2.5 17 175-191 336-352 (355)
No 1
>PRK13463 phosphatase PhoE; Provisional
Probab=100.00 E-value=5.9e-41 Score=250.81 Aligned_cols=155 Identities=23% Similarity=0.346 Sum_probs=132.3
Q ss_pred CCceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHh
Q 046442 17 LPKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRS 96 (195)
Q Consensus 17 ~~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~ 96 (195)
|+++|||||||++.+|..++ ++|. .|.|||+.|++||+.+++.|....+ + .|||||+.||+|||+.++..
T Consensus 1 m~~~i~lvRHG~t~~n~~~~-~~G~--~d~~Lt~~G~~Qa~~~~~~l~~~~~----~---~i~sSpl~Ra~qTA~~i~~~ 70 (203)
T PRK13463 1 MKTTVYVTRHGETEWNVAKR-MQGR--KNSALTENGILQAKQLGERMKDLSI----H---AIYSSPSERTLHTAELIKGE 70 (203)
T ss_pred CceEEEEEeCCCCccchhCc-ccCC--CCCCcCHHHHHHHHHHHHHhcCCCC----C---EEEECCcHHHHHHHHHHHhc
Confidence 45789999999999998874 5554 4899999999999999999986544 3 99999999999999999876
Q ss_pred cCCCccccccccCCccccccccccccchhHhHHHHHHhhcCc-----ccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhh
Q 046442 97 FSRKRIIGVREECRIREQDFGNFQVSERMKVIKETREKFGRF-----YYRFPEGESAADVFDRVSNFLESLWRDIDLNRL 171 (195)
Q Consensus 97 ~~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~ 171 (195)
++ +++.++++|+|+++|.|+|++..++...++..+..| .+.+|+|||+.++..|+..+++++.++
T Consensus 71 ~~----~~~~~~~~l~E~~~G~~eG~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~l~~i~~~------ 140 (203)
T PRK13463 71 RD----IPIIADEHFYEINMGIWEGQTIDDIERQYPDDIQLFWNEPHLFQSTSGENFEAVHKRVIEGMQLLLEK------ 140 (203)
T ss_pred CC----CCceECcCceeCCCCccCCCcHHHHhhhCHHHHHHHHhChhccCCCCCeEHHHHHHHHHHHHHHHHHh------
Confidence 54 678899999999999999999888776665554332 356789999999999999999998764
Q ss_pred ccccCCCCeEEEEeChhhhhhhhC
Q 046442 172 QHDASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 172 ~~~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
..+++|||||||++|++++|
T Consensus 141 ----~~~~~vlvVsHg~~ir~~~~ 160 (203)
T PRK13463 141 ----HKGESILIVSHAAAAKLLVG 160 (203)
T ss_pred ----CCCCEEEEEeChHHHHHHHH
Confidence 35679999999999999875
No 2
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=1.5e-40 Score=252.37 Aligned_cols=161 Identities=23% Similarity=0.321 Sum_probs=129.9
Q ss_pred CceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhc
Q 046442 18 PKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSF 97 (195)
Q Consensus 18 ~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~ 97 (195)
|++|||||||+|.+|..+ .++|+ .|.|||+.|++||+.+++.|+.... .++ .|||||+.||+|||++|+...
T Consensus 1 m~~l~LVRHGeT~~N~~~-~~~G~--~D~pLt~~G~~QA~~l~~~L~~~~~--~~d---~i~sSpL~Ra~qTA~~i~~~~ 72 (228)
T PRK14116 1 MAKLVLIRHGQSEWNLSN-QFTGW--VDVDLSEKGVEEAKKAGRLIKEAGL--EFD---QAYTSVLTRAIKTLHYALEES 72 (228)
T ss_pred CCEEEEEeCCCCCCcccc-CcCCC--CCCCcCHHHHHHHHHHHHHHHhcCC--CCC---EEEECChHHHHHHHHHHHHhc
Confidence 468999999999999987 46664 4899999999999999999986432 233 999999999999999998764
Q ss_pred CCCccccccccCCccccccccccccchhHhHHHHHHh----hcC--------------------------cccCCCCCCC
Q 046442 98 SRKRIIGVREECRIREQDFGNFQVSERMKVIKETREK----FGR--------------------------FYYRFPEGES 147 (195)
Q Consensus 98 ~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~----~~~--------------------------~~~~~~~~Es 147 (195)
+. ..+++.++++|+|++||.|+|+++.++...++.. |.. ..+.+|+|||
T Consensus 73 ~~-~~~~~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgGEs 151 (228)
T PRK14116 73 DQ-LWIPETKTWRLNERHYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPPLLDADDEGSAAKDRRYANLDPRIIPGGEN 151 (228)
T ss_pred Cc-CCCCcccCcccccccchhhcCCCHHHHHHHhhhhHHHHHhhcccccCcccccccccccccchhhhccCccCCCCCCC
Confidence 42 1257789999999999999999998887665432 110 0235799999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhhhhhC
Q 046442 148 AADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 148 ~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
+.++.+|+..++++++.. ....+++|||||||++|++|+|
T Consensus 152 ~~~~~~Rv~~~l~~~i~~--------~~~~~~~vlvVsHg~vir~ll~ 191 (228)
T PRK14116 152 LKVTLERVIPFWEDHIAP--------DLLDGKNVIIAAHGNSLRALTK 191 (228)
T ss_pred HHHHHHHHHHHHHHHHHH--------hhcCCCeEEEEcChHHHHHHHH
Confidence 999999999999998642 0124689999999999999874
No 3
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=3.2e-40 Score=250.82 Aligned_cols=161 Identities=24% Similarity=0.324 Sum_probs=129.7
Q ss_pred CceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhc
Q 046442 18 PKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSF 97 (195)
Q Consensus 18 ~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~ 97 (195)
|++|||||||+|.+|..+ .++|+ .|.|||+.|++||+.+++.|+.... .++ .|||||++||+|||++|++..
T Consensus 1 m~~l~LvRHGeT~~N~~~-~~~G~--~D~pLt~~G~~QA~~l~~~L~~~~~--~~d---~i~sSpL~Ra~~TA~~i~~~~ 72 (228)
T PRK14119 1 MPKLILCRHGQSEWNAKN-LFTGW--EDVNLSEQGINEATRAGEKVRENNI--AID---VAFTSLLTRALDTTHYILTES 72 (228)
T ss_pred CCEEEEEeCCCCCcccCC-CccCC--CCCCcCHHHHHHHHHHHHHHHhcCC--CCC---EEEeCccHHHHHHHHHHHHhc
Confidence 468999999999999987 56664 5899999999999999999986432 233 999999999999999998754
Q ss_pred CCCccccccccCCccccccccccccchhHhHHHHHHh----hc-Cc-------------------------ccCCCCCCC
Q 046442 98 SRKRIIGVREECRIREQDFGNFQVSERMKVIKETREK----FG-RF-------------------------YYRFPEGES 147 (195)
Q Consensus 98 ~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~----~~-~~-------------------------~~~~~~~Es 147 (195)
+.. .+++.++++|+|++||.|+|+++.++...++.. |. .+ ...+|+|||
T Consensus 73 ~~~-~~~~~~~~~LrE~~fG~weG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~GES 151 (228)
T PRK14119 73 KQQ-WIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSES 151 (228)
T ss_pred ccC-CCCeeECCCccccccccccCCcHHHHHHHccHHHHHHHHcccccCCCcccccccccccccccccccccccCCCCCC
Confidence 321 257889999999999999999998876665432 11 11 123589999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhhhhhC
Q 046442 148 AADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 148 ~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
+.++.+|+..++++++... ...+++|||||||++|+++++
T Consensus 152 ~~~~~~Rv~~~l~~~~~~~--------~~~~~~vlvVsHg~vir~l~~ 191 (228)
T PRK14119 152 LKDTLVRVIPFWTDHISQY--------LLDGQTVLVSAHGNSIRALIK 191 (228)
T ss_pred HHHHHHHHHHHHHHHHHhh--------ccCCCeEEEEeChHHHHHHHH
Confidence 9999999999999987541 125689999999999999874
No 4
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=100.00 E-value=5.8e-40 Score=244.90 Aligned_cols=153 Identities=27% Similarity=0.371 Sum_probs=129.9
Q ss_pred ceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhcC
Q 046442 19 KRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSFS 98 (195)
Q Consensus 19 ~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~~ 98 (195)
|+|||||||++.+|..+ .++|. .|.|||+.|++||+.+++.|....+ + .|||||+.||+|||++++..++
T Consensus 1 ~~i~lvRHG~t~~n~~~-~~~G~--~d~pLt~~G~~Qa~~~~~~l~~~~~----~---~i~sSpl~Ra~qTA~~i~~~~~ 70 (199)
T PRK15004 1 MRLWLVRHGETQANVDG-LYSGH--APTPLTARGIEQAQNLHTLLRDVPF----D---LVLCSELERAQHTARLVLSDRQ 70 (199)
T ss_pred CeEEEEeCCCCccccCC-cEeCC--CCCCcCHHHHHHHHHHHHHHhCCCC----C---EEEECchHHHHHHHHHHHhcCC
Confidence 57999999999999887 56664 4899999999999999999986544 2 8999999999999999987655
Q ss_pred CCccccccccCCccccccccccccchhHhHHHHHHhhcCc-----ccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 046442 99 RKRIIGVREECRIREQDFGNFQVSERMKVIKETREKFGRF-----YYRFPEGESAADVFDRVSNFLESLWRDIDLNRLQH 173 (195)
Q Consensus 99 ~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~ 173 (195)
+++.++++|+|+++|.|+|++..++....+..+..| ...+|+|||+.++..|+..+++++.+.
T Consensus 71 ----~~~~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~Rv~~~l~~l~~~-------- 138 (199)
T PRK15004 71 ----LPVHIIPELNEMFFGDWEMRHHRDLMQEDAENYAAWCNDWQHAIPTNGEGFQAFSQRVERFIARLSAF-------- 138 (199)
T ss_pred ----CCceeChhheeCCCcccCCCCHHHHHHHCHHHHHHHHhChhhcCCCCCcCHHHHHHHHHHHHHHHHHh--------
Confidence 678899999999999999998887665555444322 246789999999999999999999764
Q ss_pred ccCCCCeEEEEeChhhhhhhhC
Q 046442 174 DASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 174 ~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
.++++|||||||++|++++|
T Consensus 139 --~~~~~iliVsHg~~i~~l~~ 158 (199)
T PRK15004 139 --QHYQNLLIVSHQGVLSLLIA 158 (199)
T ss_pred --CCCCeEEEEcChHHHHHHHH
Confidence 34679999999999999875
No 5
>PRK01295 phosphoglyceromutase; Provisional
Probab=100.00 E-value=1.7e-39 Score=243.07 Aligned_cols=161 Identities=21% Similarity=0.348 Sum_probs=131.5
Q ss_pred CCceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHh
Q 046442 17 LPKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRS 96 (195)
Q Consensus 17 ~~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~ 96 (195)
|+++|||||||++.+|..+ .++|. .|.|||+.|++||+.+++.|+.... +++ .|||||+.||+|||++|+..
T Consensus 1 ~~~~i~LVRHGet~~n~~~-~~~G~--~d~~Lt~~G~~qA~~~~~~L~~~~~--~~d---~i~sSpl~Ra~qTA~~i~~~ 72 (206)
T PRK01295 1 MSRTLVLVRHGQSEWNLKN-LFTGW--RDPDLTEQGVAEAKAAGRKLKAAGL--KFD---IAFTSALSRAQHTCQLILEE 72 (206)
T ss_pred CCceEEEEeCCCCcccccC-CcCCC--CCCCcCHHHHHHHHHHHHHHHhCCC--CCC---EEEeCCcHHHHHHHHHHHHH
Confidence 6789999999999999887 46664 4899999999999999999986433 233 99999999999999999988
Q ss_pred cCCCccccccccCCccccccccccccchhHhHHHHHHh----hc-CcccCCCCCCCHHHHHHHHHHHH-HHHHHhhhhhh
Q 046442 97 FSRKRIIGVREECRIREQDFGNFQVSERMKVIKETREK----FG-RFYYRFPEGESAADVFDRVSNFL-ESLWRDIDLNR 170 (195)
Q Consensus 97 ~~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~----~~-~~~~~~~~~Es~~~~~~R~~~~l-~~l~~~~~~~~ 170 (195)
++.. .+++.++++|+|+++|.|+|++..++...++.. |. .+++.+|+|||+.++.+|+..++ +.++.+
T Consensus 73 ~~~~-~~~~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~----- 146 (206)
T PRK01295 73 LGQP-GLETIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVLPYYLQEILPR----- 146 (206)
T ss_pred cCCC-CCCeEECCcccccccccccCCcHHHHHHHchHHHHHHhhcccCCCCcCCCCHHHHHHHHHHHHHHHHHHh-----
Confidence 7532 367889999999999999999988876665432 22 33567899999999999999975 555442
Q ss_pred hccccCCCCeEEEEeChhhhhhhhC
Q 046442 171 LQHDASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 171 ~~~~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
...+++|||||||++|++++|
T Consensus 147 ----~~~~~~vliVtHg~~ir~l~~ 167 (206)
T PRK01295 147 ----VLRGERVLVAAHGNSLRALVM 167 (206)
T ss_pred ----ccCCCeEEEEcChHHHHHHHH
Confidence 124689999999999999875
No 6
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=2.9e-39 Score=245.57 Aligned_cols=161 Identities=17% Similarity=0.254 Sum_probs=128.2
Q ss_pred CceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhc
Q 046442 18 PKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSF 97 (195)
Q Consensus 18 ~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~ 97 (195)
|++|||||||+|.+|..+ .++|+ .|.|||+.|++||+.+++.|..... .++ .|||||+.||+|||++++...
T Consensus 1 m~~l~LvRHG~t~~n~~~-~~qG~--~D~~Lt~~G~~qa~~~~~~l~~~~~--~~~---~i~sSpl~Ra~~TA~~i~~~~ 72 (230)
T PRK14117 1 MVKLVFARHGESEWNKAN-LFTGW--ADVDLSEKGTQQAIDAGKLIKEAGI--EFD---LAFTSVLKRAIKTTNLALEAS 72 (230)
T ss_pred CCEEEEEeCccccCcccC-CcCCC--CCCCcCHHHHHHHHHHHHHHHHcCC--CCC---EEEECCcHHHHHHHHHHHHhc
Confidence 478999999999999987 46664 5899999999999999999986332 233 899999999999999987532
Q ss_pred CCCccccccccCCccccccccccccchhHhHHHHHHh----hc-C-------------------------cccCCCCCCC
Q 046442 98 SRKRIIGVREECRIREQDFGNFQVSERMKVIKETREK----FG-R-------------------------FYYRFPEGES 147 (195)
Q Consensus 98 ~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~----~~-~-------------------------~~~~~~~~Es 147 (195)
.. ..+++.++++|+|++||.|+|+++.++...++.. |. . ..+.+|+|||
T Consensus 73 ~~-~~~~~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs 151 (230)
T PRK14117 73 DQ-LWVPVEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDDEYSAHTDRRYASLDDSVIPDAEN 151 (230)
T ss_pred cc-CCCCceeCCccccccchhhcCCCHHHHHHHccHHHHHHHhcccccCCCcccccccccccccccccccccCCCCCCCC
Confidence 21 1367888999999999999999988876655432 11 0 1235689999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhhhhhC
Q 046442 148 AADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 148 ~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
+.++.+|+..++++++.. ....+++|||||||++|++|++
T Consensus 152 ~~~~~~Rv~~~l~~~~~~--------~~~~~~~vlvVsHg~~ir~ll~ 191 (230)
T PRK14117 152 LKVTLERALPFWEDKIAP--------ALKDGKNVFVGAHGNSIRALVK 191 (230)
T ss_pred HHHHHHHHHHHHHHHHHh--------hccCCCEEEEEeChHHHHHHHH
Confidence 999999999999998632 0123578999999999999975
No 7
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=4e-39 Score=244.51 Aligned_cols=160 Identities=19% Similarity=0.296 Sum_probs=128.3
Q ss_pred ceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhcC
Q 046442 19 KRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSFS 98 (195)
Q Consensus 19 ~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~~ 98 (195)
|+|||||||++.+|..+ .++|. .|.|||+.|++||+.+++.|+.... .++ .|||||+.||+|||+.|+...+
T Consensus 1 m~l~LvRHG~t~~n~~~-~~~G~--~d~~Lt~~G~~qa~~~~~~l~~~~~--~~d---~i~sSpl~Ra~~TA~~i~~~~~ 72 (227)
T PRK14118 1 MELVFIRHGFSEWNAKN-LFTGW--RDVNLTERGVEEAKAAGKKLKEAGY--EFD---IAFTSVLTRAIKTCNIVLEESN 72 (227)
T ss_pred CEEEEEecCCCcccccc-CcCCC--CCCCCCHHHHHHHHHHHHHHHhcCC--CCC---EEEEeChHHHHHHHHHHHHhcC
Confidence 47999999999999987 46664 4899999999999999999986432 233 9999999999999999987653
Q ss_pred CCccccccccCCccccccccccccchhHhHHHHHHh----hcC-c-------------------------ccCCCCCCCH
Q 046442 99 RKRIIGVREECRIREQDFGNFQVSERMKVIKETREK----FGR-F-------------------------YYRFPEGESA 148 (195)
Q Consensus 99 ~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~----~~~-~-------------------------~~~~~~~Es~ 148 (195)
.. .+++.++++|+|++||.|+|+++.++...++.. |.. + ...+|+|||+
T Consensus 73 ~~-~~~~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~ 151 (227)
T PRK14118 73 QL-WIPQVKNWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQDPNSAHNDRRYAHLPADVVPDAENL 151 (227)
T ss_pred CC-CCCeecCCccccccCccccCCcHHHHHHHhhHHHHHHHHhccccCCCccccccccccccchhhccCcCCCCCCCCCH
Confidence 21 256788999999999999999998876655432 111 0 1346899999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhhhhhC
Q 046442 149 ADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 149 ~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
.++.+|+..++++++... ...+++|||||||++|++|+|
T Consensus 152 ~~~~~Rv~~~l~~~~~~~--------~~~~~~vlvVsHggvir~ll~ 190 (227)
T PRK14118 152 KVTLERVLPFWEDQIAPA--------LLSGKRVLVAAHGNSLRALAK 190 (227)
T ss_pred HHHHHHHHHHHHHHHhhh--------hcCCCeEEEEeCHHHHHHHHH
Confidence 999999999999987531 134679999999999999875
No 8
>PRK03482 phosphoglycerate mutase; Provisional
Probab=100.00 E-value=6.3e-39 Score=242.06 Aligned_cols=154 Identities=27% Similarity=0.345 Sum_probs=128.1
Q ss_pred CceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhc
Q 046442 18 PKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSF 97 (195)
Q Consensus 18 ~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~ 97 (195)
|++|||||||++.+|..+. +.|. .|.|||+.|++||+.+++.|....+ + .|||||+.||+|||++|++.+
T Consensus 1 m~~i~lvRHG~t~~n~~~~-~~g~--~d~~Lt~~G~~qA~~~~~~l~~~~~----~---~I~sSpl~Ra~qTA~~i~~~~ 70 (215)
T PRK03482 1 MLQVYLVRHGETQWNAERR-IQGQ--SDSPLTAKGEQQAMQVAERAKELGI----T---HIISSDLGRTRRTAEIIAQAC 70 (215)
T ss_pred CcEEEEEeCCCcccccccc-cCCC--CCCCcCHHHHHHHHHHHHHHhcCCC----C---EEEECCcHHHHHHHHHHHHhc
Confidence 5789999999999998874 5553 4899999999999999999986544 3 999999999999999999877
Q ss_pred CCCccccccccCCccccccccccccchhHhHHHHHH---hh--cCcccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhc
Q 046442 98 SRKRIIGVREECRIREQDFGNFQVSERMKVIKETRE---KF--GRFYYRFPEGESAADVFDRVSNFLESLWRDIDLNRLQ 172 (195)
Q Consensus 98 ~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~---~~--~~~~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~ 172 (195)
+ +++.++++|+|+++|.|+|++..++...... .+ ....+.+|+|||+.++..|+..++++++..
T Consensus 71 ~----~~~~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~Rv~~~l~~~~~~------- 139 (215)
T PRK03482 71 G----CDIIFDPRLRELNMGVLEKRHIDSLTEEEEGWRRQLVNGTVDGRIPEGESMQELSDRMHAALESCLEL------- 139 (215)
T ss_pred C----CCeeEChhccccCCccccCCcHHHHHhhHHHHHHhhhcCCCccCCCCCccHHHHHHHHHHHHHHHHHh-------
Confidence 6 5788999999999999999988765433221 11 123456789999999999999999998753
Q ss_pred cccCCCCeEEEEeChhhhhhhhC
Q 046442 173 HDASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 173 ~~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
..+++|||||||++|++++|
T Consensus 140 ---~~~~~vliVsHg~~i~~l~~ 159 (215)
T PRK03482 140 ---PQGSRPLLVSHGIALGCLVS 159 (215)
T ss_pred ---CCCCeEEEEeCcHHHHHHHH
Confidence 34678999999999999875
No 9
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=9e-39 Score=244.77 Aligned_cols=162 Identities=25% Similarity=0.303 Sum_probs=128.9
Q ss_pred CCCceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHH
Q 046442 16 LLPKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGR 95 (195)
Q Consensus 16 ~~~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~ 95 (195)
+||++|||||||++.+|..+ .++|. .|.|||+.|++||+.+++.|..... .++ .|||||+.||+|||+.|+.
T Consensus 2 ~~m~~i~LVRHGqt~~n~~~-~~~G~--~D~pLTe~G~~QA~~~a~~l~~~~~--~~~---~IysSpl~Ra~qTA~~i~~ 73 (249)
T PRK14120 2 MMTYTLVLLRHGESEWNAKN-LFTGW--VDVDLTEKGEAEAKRGGELLAEAGV--LPD---VVYTSLLRRAIRTANLALD 73 (249)
T ss_pred CCCcEEEEEeCCCCcccccC-CcCCC--CCCCcCHHHHHHHHHHHHHHHhcCC--CCC---EEEecChHHHHHHHHHHHH
Confidence 57789999999999999887 45554 5899999999999999999986432 233 8999999999999999976
Q ss_pred hcCCCccccccccCCccccccccccccchhHhHHHHHHh-hcCcc---------------------------cCCCCCCC
Q 046442 96 SFSRKRIIGVREECRIREQDFGNFQVSERMKVIKETREK-FGRFY---------------------------YRFPEGES 147 (195)
Q Consensus 96 ~~~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~-~~~~~---------------------------~~~~~~Es 147 (195)
..+. ..+++.++++|+|++||.|+|+++.++..+++.. +..|. ..+|+|||
T Consensus 74 ~~~~-~~~~i~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~GES 152 (249)
T PRK14120 74 AADR-LWIPVRRSWRLNERHYGALQGKDKAETKAEYGEEQFMLWRRSYDTPPPPIEDGSEYSQDNDPRYADLGVGPRTEC 152 (249)
T ss_pred hccc-CCCCeEECCCcccccccccCCCCHHHHHHHccHHHHHHHHhccccCCCccccccccccccCccccccCCCCCCCC
Confidence 5432 1357889999999999999999988877655431 21111 01489999
Q ss_pred HHHHHHHHHHHHHHHH-HhhhhhhhccccCCCCeEEEEeChhhhhhhhC
Q 046442 148 AADVFDRVSNFLESLW-RDIDLNRLQHDASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 148 ~~~~~~R~~~~l~~l~-~~~~~~~~~~~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
+.++..|+..+|++++ .+ ...+++|||||||++|+++++
T Consensus 153 ~~~~~~Rv~~~l~~~~~~~---------~~~~~~iliVsHggvir~l~~ 192 (249)
T PRK14120 153 LKDVVARFLPYWEDDIVPD---------LKAGKTVLIAAHGNSLRALVK 192 (249)
T ss_pred HHHHHHHHHHHHHHHHHHH---------hhCCCEEEEEeCHHHHHHHHH
Confidence 9999999999999863 32 134678999999999999874
No 10
>PRK13462 acid phosphatase; Provisional
Probab=100.00 E-value=1.1e-38 Score=238.12 Aligned_cols=154 Identities=23% Similarity=0.313 Sum_probs=126.7
Q ss_pred CCCceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHH
Q 046442 16 LLPKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGR 95 (195)
Q Consensus 16 ~~~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~ 95 (195)
..|++||||||||+.+|..+ .++|. .|.|||+.|++||+.+++.|....+. ++ .|||||+.||+|||+.+.
T Consensus 3 ~~~~~i~LvRHG~t~~n~~~-~~~G~--~d~pLt~~G~~QA~~l~~~l~~~~~~--~~---~i~sSpl~Ra~qTA~~i~- 73 (203)
T PRK13462 3 VRNHRLLLLRHGETEWSKSG-RHTGR--TELELTETGRTQAELAGQALGELELD--DP---LVISSPRRRALDTAKLAG- 73 (203)
T ss_pred ccccEEEEEeCCCCCcccCC-CccCC--CCCCCCHHHHHHHHHHHHHHHhCCCC--CC---EEEECchHHHHHHHHHhc-
Confidence 45789999999999999887 45554 48999999999999999999876542 22 699999999999999872
Q ss_pred hcCCCccccccccCCccccccccccccchhHhHHHHHHhhcCcccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhcccc
Q 046442 96 SFSRKRIIGVREECRIREQDFGNFQVSERMKVIKETREKFGRFYYRFPEGESAADVFDRVSNFLESLWRDIDLNRLQHDA 175 (195)
Q Consensus 96 ~~~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~ 175 (195)
+. ...++++|+|++||.|+|++..++...++. +..|...+|+|||+.++..|+..+++++...
T Consensus 74 -~~-----~~~~~~~LrE~~~G~~eG~~~~ei~~~~~~-~~~~~~~~p~gES~~~~~~Rv~~~l~~i~~~---------- 136 (203)
T PRK13462 74 -LT-----VDEVSGLLAEWDYGSYEGLTTPQIRESEPD-WLVWTHGCPGGESVAQVNERADRAVALALEH---------- 136 (203)
T ss_pred -Cc-----ccccCccccccCCccccCCcHHHHHHhCch-HHhhcCCCCCCccHHHHHHHHHHHHHHHHHh----------
Confidence 11 236799999999999999998887665443 3345556689999999999999999998764
Q ss_pred CCCCeEEEEeChhhhhhhhC
Q 046442 176 SQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 176 ~~~~~ilvVsHg~~i~~ll~ 195 (195)
..+++|||||||++|++++|
T Consensus 137 ~~~~~vliVsHg~vir~ll~ 156 (203)
T PRK13462 137 MESRDVVFVSHGHFSRAVIT 156 (203)
T ss_pred CCCCCEEEEeCCHHHHHHHH
Confidence 35678999999999999874
No 11
>PRK01112 phosphoglyceromutase; Provisional
Probab=100.00 E-value=1e-38 Score=241.88 Aligned_cols=160 Identities=23% Similarity=0.343 Sum_probs=129.8
Q ss_pred CceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhc
Q 046442 18 PKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSF 97 (195)
Q Consensus 18 ~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~ 97 (195)
|++|||||||++.+|..+ .++|. .|.+||+.|++||+.++++|....+ + .|||||+.||+|||+.|+..+
T Consensus 1 M~~L~LvRHGqt~~n~~~-~~~G~--~D~~Lte~G~~Qa~~l~~~L~~~~~----d---~iysSpl~Ra~qTA~~i~~~~ 70 (228)
T PRK01112 1 MALLILLRHGQSVWNAKN-LFTGW--VDIPLSQQGIAEAIAAGEKIKDLPI----D---CIFTSTLVRSLMTALLAMTNH 70 (228)
T ss_pred CcEEEEEeCCCCcccccc-ccCCC--CCCCcCHHHHHHHHHHHHHhhcCCC----C---EEEEcCcHHHHHHHHHHHHhh
Confidence 578999999999999887 45554 5899999999999999999987544 3 999999999999999998533
Q ss_pred CC-------------------------CccccccccCCccccccccccccchhHhHHHHHHh----hc-CcccCCCCCCC
Q 046442 98 SR-------------------------KRIIGVREECRIREQDFGNFQVSERMKVIKETREK----FG-RFYYRFPEGES 147 (195)
Q Consensus 98 ~~-------------------------~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~----~~-~~~~~~~~~Es 147 (195)
.. ...+++..+++|+|+++|.|+|+++.++...++.. |. .+.+.+|+|||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~GES 150 (228)
T PRK01112 71 SSGKIPYIVHEEDDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGKNKAETAEKFGEEQVKLWRRSYKTAPPQGES 150 (228)
T ss_pred cccccccccccccccccccccccccccccCCCeeecCccccccccccCCCCHHHHHHHCcHHHHHHHhCcCCCCCCCCCC
Confidence 10 11357788999999999999999998876655432 22 34467899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhhhhhC
Q 046442 148 AADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 148 ~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
+.++..|+..++++++.+. ...+++|+|||||++|+++++
T Consensus 151 ~~d~~~Rv~~~l~~~~~~~--------~~~~~~ilVVsHg~vir~l~~ 190 (228)
T PRK01112 151 LEDTGQRTLPYFQNRILPH--------LQQGKNVFVSAHGNSLRSLIM 190 (228)
T ss_pred HHHHHHHHHHHHHHHHHHH--------hcCCCeEEEEeCHHHHHHHHH
Confidence 9999999999999875431 124689999999999999874
No 12
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=100.00 E-value=4e-38 Score=231.00 Aligned_cols=150 Identities=30% Similarity=0.479 Sum_probs=125.7
Q ss_pred EEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhcCCC
Q 046442 21 IILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSFSRK 100 (195)
Q Consensus 21 i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~~~~ 100 (195)
||||||||+.+|..+. + |. .|+|||+.|++||+.+++.|+...+ + .|||||+.||+|||+.++..++
T Consensus 1 i~lvRHg~t~~n~~~~-~-g~--~d~~Lt~~G~~qa~~l~~~l~~~~~----~---~i~sSpl~Ra~qTA~~i~~~~~-- 67 (177)
T TIGR03162 1 LYLIRHGETDVNAGLC-Y-GQ--TDVPLAEKGAEQAAALREKLADVPF----D---AVYSSPLSRCRELAEILAERRG-- 67 (177)
T ss_pred CEEEeCCCCccCCCce-e-CC--CCCCcChhHHHHHHHHHHHhcCCCC----C---EEEECchHHHHHHHHHHHhhcC--
Confidence 6999999999998874 4 43 4899999999999999999975433 3 9999999999999999998766
Q ss_pred ccccccccCCccccccccccccchhHhHHHHH--Hhhc--CcccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhccccC
Q 046442 101 RIIGVREECRIREQDFGNFQVSERMKVIKETR--EKFG--RFYYRFPEGESAADVFDRVSNFLESLWRDIDLNRLQHDAS 176 (195)
Q Consensus 101 ~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~--~~~~--~~~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~ 176 (195)
+++.++++|+|+++|.|+|++..+....++ ..|. ...+.+|+|||+.++..|+..+++++.++ .
T Consensus 68 --~~~~~~~~L~E~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~l~~~----------~ 135 (177)
T TIGR03162 68 --LPIIKDPRLREMDFGDWEGRSWDEIPEAYPELDAWAADWQHARPPGGESFADFYQRVSEFLEELLKA----------H 135 (177)
T ss_pred --CCceECCccccccCCccCCCCHHHHHHhCHHHHHHHhCcccCCCcCCCCHHHHHHHHHHHHHHHHHh----------C
Confidence 578899999999999999998887665433 1121 12357789999999999999999999864 3
Q ss_pred CCCeEEEEeChhhhhhhhC
Q 046442 177 QELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 177 ~~~~ilvVsHg~~i~~ll~ 195 (195)
.+++|||||||++|+++++
T Consensus 136 ~~~~vlvVsHg~~i~~l~~ 154 (177)
T TIGR03162 136 EGDNVLIVTHGGVIRALLA 154 (177)
T ss_pred CCCeEEEEECHHHHHHHHH
Confidence 5689999999999999874
No 13
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=100.00 E-value=8.3e-38 Score=239.47 Aligned_cols=160 Identities=21% Similarity=0.342 Sum_probs=128.9
Q ss_pred ceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhcC
Q 046442 19 KRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSFS 98 (195)
Q Consensus 19 ~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~~ 98 (195)
|+|||||||++.+|..+ .++|. .|.|||+.|++||+.+++.|+.... .++ .|||||+.||+|||+.|+..++
T Consensus 1 ~~i~LVRHGqt~~n~~~-~~~G~--~D~pLte~G~~QA~~la~~L~~~~~--~~d---~IysSpl~Ra~qTA~~i~~~~~ 72 (247)
T PRK14115 1 TKLVLIRHGESQWNKEN-RFTGW--TDVDLSEKGVSEAKAAGKLLKEEGY--TFD---VAYTSVLKRAIRTLWIVLDELD 72 (247)
T ss_pred CEEEEEECCCccccccc-CcCCC--CCCCcCHHHHHHHHHHHHHHHhcCC--CCC---EEEEcCCHHHHHHHHHHHHHcC
Confidence 57999999999999887 45553 5899999999999999999986543 233 8999999999999999988775
Q ss_pred CCccccccccCCccccccccccccchhHhHHHHHHh----hcC-c-------------------------ccCCCCCCCH
Q 046442 99 RKRIIGVREECRIREQDFGNFQVSERMKVIKETREK----FGR-F-------------------------YYRFPEGESA 148 (195)
Q Consensus 99 ~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~----~~~-~-------------------------~~~~~~~Es~ 148 (195)
.. .+++.++++|+|++||.|+|+++.++...++.. |.. + ...+|+|||+
T Consensus 73 ~~-~~~~~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GES~ 151 (247)
T PRK14115 73 QM-WLPVEKSWRLNERHYGALQGLNKAETAAKYGDEQVKIWRRSYDVPPPALEKDDERYPGHDPRYAKLPEEELPLTESL 151 (247)
T ss_pred CC-CCCceECccccccccccccCCCHHHHHHHhhHHHHHHHhcccccCCCcccccccccccccchhhcccCCCCCCCCcH
Confidence 32 247889999999999999999998876654332 211 0 1247899999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhhhhhC
Q 046442 149 ADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 149 ~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
.++..|+..+|++++.+. ...+++|||||||++|+++++
T Consensus 152 ~~~~~Rv~~~l~~~i~~~--------~~~~~~vlvVtHggvir~l~~ 190 (247)
T PRK14115 152 KDTIARVLPYWNETIAPQ--------LKSGKRVLIAAHGNSLRALVK 190 (247)
T ss_pred HHHHHHHHHHHHHHHHHH--------hcCCCeEEEEeChHHHHHHHH
Confidence 999999999999986421 134689999999999999874
No 14
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=100.00 E-value=1.1e-37 Score=233.56 Aligned_cols=158 Identities=27% Similarity=0.303 Sum_probs=127.3
Q ss_pred eEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhcCC
Q 046442 20 RIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSFSR 99 (195)
Q Consensus 20 ~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~~~ 99 (195)
+||||||||+.+|..+. ++|.. .|.|||+.|++||+.+++.|+...+ + .|||||+.||+|||++|+..++
T Consensus 1 ~i~lvRHG~t~~n~~~~-~~g~~-~d~~Lt~~G~~qa~~l~~~l~~~~~----~---~i~sSpl~Ra~qTA~~i~~~~~- 70 (204)
T TIGR03848 1 TVILVRHGRSTANTAGT-LAGRT-PGVDLDERGREQAAALAERLADLPI----A---AIVSSPLERCRETAEPIAEARG- 70 (204)
T ss_pred CEEEEeCCCCCcccccc-ccCCC-CCCCcCHHHHHHHHHHHHHHhcCCC----C---EEEeCcHHHHHHHHHHHHHhcC-
Confidence 48999999999998874 55543 2599999999999999999986443 3 9999999999999999998775
Q ss_pred CccccccccCCccccccccccccchhHhHHH-HHHhhc--CcccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhccccC
Q 046442 100 KRIIGVREECRIREQDFGNFQVSERMKVIKE-TREKFG--RFYYRFPEGESAADVFDRVSNFLESLWRDIDLNRLQHDAS 176 (195)
Q Consensus 100 ~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~-~~~~~~--~~~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~ 176 (195)
+++.++++|+|+++|.|+|+++.++... .+..|. ...+.+|+|||+.++..|+..+++++.+... ....
T Consensus 71 ---~~~~~~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~~~~~~~-----~~~~ 142 (204)
T TIGR03848 71 ---LPPRVDERLGECDYGDWTGRELKELAKEPLWPVVQAHPSAAVFPGGESLAQVQARAVAAVREHDARLA-----AEHG 142 (204)
T ss_pred ---CCceECcccccCCCCeeCCcCHHHHhCcHHHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHhh-----hccC
Confidence 6789999999999999999998876542 222222 2235678999999999999999999875311 1112
Q ss_pred CCCeEEEEeChhhhhhhhC
Q 046442 177 QELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 177 ~~~~ilvVsHg~~i~~ll~ 195 (195)
.+++|||||||++|++++|
T Consensus 143 ~~~~vliVsHg~~ir~ll~ 161 (204)
T TIGR03848 143 PDAVWVACSHGDVIKSVLA 161 (204)
T ss_pred CCCEEEEEeCChHHHHHHH
Confidence 4678999999999999874
No 15
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=100.00 E-value=8.4e-38 Score=239.17 Aligned_cols=160 Identities=25% Similarity=0.342 Sum_probs=128.3
Q ss_pred ceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhcC
Q 046442 19 KRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSFS 98 (195)
Q Consensus 19 ~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~~ 98 (195)
|+||||||||+.+|..++ ++|. .|.+||+.|++||+.+++.|..... .++ .|||||++||+|||++|+..++
T Consensus 1 ~~l~lVRHGqt~~n~~~~-~~G~--~D~~Lt~~G~~QA~~la~~L~~~~~--~~d---~iysSpl~Ra~qTA~ii~~~~~ 72 (245)
T TIGR01258 1 MKLVLVRHGESEWNALNL-FTGW--VDVKLSEKGQQEAKRAGELLKEEGY--EFD---VAYTSLLKRAIHTLNIALDELD 72 (245)
T ss_pred CEEEEEeCCCcCccccCC-cCCC--CCCCcCHHHHHHHHHHHHHHHhcCC--CCC---EEEEcChHHHHHHHHHHHHhcC
Confidence 579999999999998874 5554 4899999999999999999986433 233 8999999999999999988765
Q ss_pred CCccccccccCCccccccccccccchhHhHHHHHHh----hc-Cc-------------------cc------CCCCCCCH
Q 046442 99 RKRIIGVREECRIREQDFGNFQVSERMKVIKETREK----FG-RF-------------------YY------RFPEGESA 148 (195)
Q Consensus 99 ~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~----~~-~~-------------------~~------~~~~~Es~ 148 (195)
.. .+++.++++|+|++||.|+|+++.++...++.. |. .+ .| .+|+|||+
T Consensus 73 ~~-~~~i~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~d~~y~~~~~~~~p~GES~ 151 (245)
T TIGR01258 73 QL-WIPVKKSWRLNERHYGALQGLNKAETAAKYGEEQVNIWRRSFDVPPPPIDESDPRSPHNDPRYAHLDPKVLPLTESL 151 (245)
T ss_pred CC-CCCeeeCcccccccCCCCcCCCHHHHHHHhhHHHHHHHHhhccCCCCcCCcccccccccChhhhcCCcccCCCCCCH
Confidence 32 256788999999999999999998876655432 11 00 11 26899999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhhhhhC
Q 046442 149 ADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 149 ~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
.++..|+..+|++++.. ...++++|||||||++|+++++
T Consensus 152 ~~~~~Rv~~~l~~l~~~--------~~~~~~~vlvVsHg~vir~l~~ 190 (245)
T TIGR01258 152 KDTIARVLPYWNDEIAP--------DLLSGKRVLIVAHGNSLRALVK 190 (245)
T ss_pred HHHHHHHHHHHHHHHhh--------hhcCCCEEEEEcChHHHHHHHH
Confidence 99999999999998743 1124679999999999999874
No 16
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=100.00 E-value=1.3e-37 Score=233.90 Aligned_cols=157 Identities=32% Similarity=0.449 Sum_probs=133.6
Q ss_pred CCceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHh
Q 046442 17 LPKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRS 96 (195)
Q Consensus 17 ~~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~ 96 (195)
++++||||||||+.+|..+ .++| +.|+|||+.|++||+.+++.|...... ++ .|||||+.||+|||+++++.
T Consensus 1 ~~~~i~lvRHGqt~~n~~~-~~~G--~~d~pLt~~G~~QA~~l~~~l~~~~~~--~~---~i~sS~l~Ra~~TA~~~a~~ 72 (208)
T COG0406 1 MMMRLYLVRHGETEWNVEG-RLQG--WTDSPLTEEGRAQAEALAERLAARDIG--FD---AIYSSPLKRAQQTAEPLAEE 72 (208)
T ss_pred CceEEEEEecCCccccccc-cccC--CCCCCCCHHHHHHHHHHHHHHhhcCCC--CC---EEEECchHHHHHHHHHHHHh
Confidence 5789999999999999887 4666 458999999999999999999964332 23 89999999999999999999
Q ss_pred cCCCccccccccCCccccccccccccchhHhHHHHHHhhcC-----cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhh
Q 046442 97 FSRKRIIGVREECRIREQDFGNFQVSERMKVIKETREKFGR-----FYYRFPEGESAADVFDRVSNFLESLWRDIDLNRL 171 (195)
Q Consensus 97 ~~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~ 171 (195)
++ .++.+++.|+|+++|.|+|.+..+.....+..+.. +.+.+|++||+.++..|+..++.++...
T Consensus 73 ~~----~~~~~~~~l~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~~~~~------ 142 (208)
T COG0406 73 LG----LPLEVDDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPPPGGESLADVSKRVVAALAELLRS------ 142 (208)
T ss_pred cC----CCceecCCeeEeecccccCCcHHHHHHhCHHHHHHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHHh------
Confidence 87 45889999999999999999998887776655443 3466777999999999999999999875
Q ss_pred ccccCCCCeEEEEeChhhhhhhhC
Q 046442 172 QHDASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 172 ~~~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
..+++|+|||||++|++|++
T Consensus 143 ----~~~~~vlvVsHg~~ir~l~~ 162 (208)
T COG0406 143 ----PPGNNVLVVSHGGVIRALLA 162 (208)
T ss_pred ----cCCCeEEEEEChHHHHHHHH
Confidence 23448999999999998864
No 17
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=100.00 E-value=2.2e-36 Score=245.17 Aligned_cols=160 Identities=23% Similarity=0.298 Sum_probs=135.2
Q ss_pred CCCCCCceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHH
Q 046442 13 QRHLLPKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLRE 92 (195)
Q Consensus 13 ~~~~~~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~ 92 (195)
..+.++++|||||||++.+|..++ +.|. .|.+||+.|++||+.+++.|.... .++ .|||||+.||+|||+.
T Consensus 166 ~~~~~~~~i~LvRHGet~~n~~~~-~~g~--~D~~Lt~~G~~QA~~l~~~l~~~~---~~d---~i~sSpl~Ra~qTA~~ 236 (372)
T PRK07238 166 GARGTPTRLLLLRHGQTELSVQRR-YSGR--GNPELTEVGRRQAAAAARYLAARG---GID---AVVSSPLQRARDTAAA 236 (372)
T ss_pred CCCCCceEEEEEeCCCCCcccCCe-eeCC--CCCCcCHHHHHHHHHHHHHHhccC---CCC---EEEECChHHHHHHHHH
Confidence 356788999999999999998874 5554 489999999999999999998751 123 8999999999999999
Q ss_pred HHHhcCCCccccccccCCccccccccccccchhHhHHHHHHhhcCc----ccCCCCCCCHHHHHHHHHHHHHHHHHhhhh
Q 046442 93 IGRSFSRKRIIGVREECRIREQDFGNFQVSERMKVIKETREKFGRF----YYRFPEGESAADVFDRVSNFLESLWRDIDL 168 (195)
Q Consensus 93 i~~~~~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~~~~~----~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~ 168 (195)
++..++ +++.++++|+|+++|.|+|++..++...++..+..| .+.+|+|||+.++..|+..+++++...
T Consensus 237 i~~~~~----~~~~~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~w~~~~~~~~p~gEs~~~~~~Rv~~~l~~l~~~--- 309 (372)
T PRK07238 237 AAKALG----LDVTVDDDLIETDFGAWEGLTFAEAAERDPELHRAWLADTSVAPPGGESFDAVARRVRRARDRLIAE--- 309 (372)
T ss_pred HHHhcC----CCcEECccceeCCCCccCCCCHHHHHHHCHHHHHHHHhCCCCCCcCCCCHHHHHHHHHHHHHHHHHH---
Confidence 998876 578899999999999999999888766655544333 467789999999999999999999764
Q ss_pred hhhccccCCCCeEEEEeChhhhhhhhC
Q 046442 169 NRLQHDASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 169 ~~~~~~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
..+++|||||||++|+++++
T Consensus 310 -------~~~~~vlvVtHg~~ir~ll~ 329 (372)
T PRK07238 310 -------YPGATVLVVSHVTPIKTLLR 329 (372)
T ss_pred -------CCCCeEEEEEChHHHHHHHH
Confidence 35678999999999999874
No 18
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=100.00 E-value=6.3e-36 Score=214.88 Aligned_cols=154 Identities=31% Similarity=0.397 Sum_probs=126.4
Q ss_pred eEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhcCC
Q 046442 20 RIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSFSR 99 (195)
Q Consensus 20 ~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~~~ 99 (195)
+|||||||++.+|..+.+. |. .|.|||+.|+.||+.+++.|.... ...++ .|||||+.||+|||++++..++.
T Consensus 1 ~i~lvRHG~s~~n~~~~~~-g~--~d~~Lt~~G~~qa~~~a~~l~~~~-~~~~~---~i~sSpl~Ra~qTa~~i~~~~~~ 73 (155)
T smart00855 1 RLYLIRHGETEANREGRLT-GW--TDSPLTELGRAQAEALGELLASLG-RLRFD---VIYSSPLLRARETAEALAIALGL 73 (155)
T ss_pred CEEEEeCCCCcccccCeEc-CC--CCCCCCHHHHHHHHHHHHHHHhcc-CCCCC---EEEeCchHHHHHHHHHHHHhcCC
Confidence 4899999999999776433 43 589999999999999999998642 01233 89999999999999999988762
Q ss_pred CccccccccCCccccccccccccchhHhHHHHHHhhcC-cccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCC
Q 046442 100 KRIIGVREECRIREQDFGNFQVSERMKVIKETREKFGR-FYYRFPEGESAADVFDRVSNFLESLWRDIDLNRLQHDASQE 178 (195)
Q Consensus 100 ~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~ 178 (195)
+ .+++.|+|+++|.|+|++..+.....+..+.. +++.+|+|||+.++..|+..+++.+..+ ....+
T Consensus 74 ----~-~~~~~L~E~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~Rv~~~~~~i~~~--------~~~~~ 140 (155)
T smart00855 74 ----G-EVDPRLRERDYGAWEGLTKEEERAKAWTRPADWLGAAPPGGESLADVVERLVRALEELIAT--------HDKSG 140 (155)
T ss_pred ----C-CCChhhhhcccceecCCcHHHHHHHHHHHHhccCCCCCcCCCCHHHHHHHHHHHHHHHHHh--------cccCC
Confidence 2 38899999999999999988877766665543 4567889999999999999999999763 11256
Q ss_pred CeEEEEeChhhhhhh
Q 046442 179 LNLIIVSHGLTSRVF 193 (195)
Q Consensus 179 ~~ilvVsHg~~i~~l 193 (195)
++|||||||++|+++
T Consensus 141 ~~vlvVtHg~~ir~~ 155 (155)
T smart00855 141 QNVLIVSHGGVIRAL 155 (155)
T ss_pred CeEEEEECCcccccC
Confidence 789999999999875
No 19
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=100.00 E-value=4.5e-36 Score=215.71 Aligned_cols=153 Identities=34% Similarity=0.460 Sum_probs=125.9
Q ss_pred eEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhcCC
Q 046442 20 RIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSFSR 99 (195)
Q Consensus 20 ~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~~~ 99 (195)
+|||||||++.+|..+. +.+. .|+|||+.|+.||+.+++.|...... ++ .|||||+.||+|||+.+++.++
T Consensus 1 ~i~liRHg~~~~n~~~~-~~~~--~d~~Lt~~G~~qA~~~~~~l~~~~~~--~~---~i~~Sp~~R~~qTA~~~~~~~~- 71 (158)
T PF00300_consen 1 RIYLIRHGESEFNAEGR-VQGD--SDPPLTERGREQARQLGEYLAERDIQ--ID---VIYSSPLRRCIQTAEIIAEGLG- 71 (158)
T ss_dssp EEEEEE-S-BHHHHTTB-CGTT--SSTGBEHHHHHHHHHHHHHHHHTTSS--CS---EEEEESSHHHHHHHHHHHHHHT-
T ss_pred CEEEEECCccccccCCC-cCCC--CCccccHHHHHHHHhhcccccccccC--ce---EEecCCcchhhhhhchhhcccc-
Confidence 59999999999987763 4443 36799999999999999999954432 33 8999999999999999999876
Q ss_pred CccccccccCCccccccccccccchhHhHHHHHHhhc-----CcccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 046442 100 KRIIGVREECRIREQDFGNFQVSERMKVIKETREKFG-----RFYYRFPEGESAADVFDRVSNFLESLWRDIDLNRLQHD 174 (195)
Q Consensus 100 ~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~ 174 (195)
.++.+++.|+|+++|.|+|.+..++...+...+. .+.+.+|++||+.++..|+..+++.+...
T Consensus 72 ---~~~~~~~~l~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~~~~l~~~--------- 139 (158)
T PF00300_consen 72 ---IEIIVDPRLREIDFGDWEGRPFDEIEEKFPDEFEAWWSDPYFYRPPGGESWEDFQQRVKQFLDELIAY--------- 139 (158)
T ss_dssp ---SEEEEEGGGSCCGCGGGTTSBHHHHHHHHHHHHHHHHHHTSSCGSTTSHHHHHHHHHHHHHHHHHHHH---------
T ss_pred ---cccccccccccccchhhcccchhhHHhhhhcccchhhccccccccccCCCHHHHHHHHHHHHHHHHHH---------
Confidence 6899999999999999999998888777654332 34577889999999999999999999851
Q ss_pred cCCCCeEEEEeChhhhhhh
Q 046442 175 ASQELNLIIVSHGLTSRVF 193 (195)
Q Consensus 175 ~~~~~~ilvVsHg~~i~~l 193 (195)
..++++|||||||++|++|
T Consensus 140 ~~~~~~vliVsHg~~i~~~ 158 (158)
T PF00300_consen 140 KRPGENVLIVSHGGFIRAL 158 (158)
T ss_dssp HHTTSEEEEEE-HHHHHHH
T ss_pred hCCCCEEEEEecHHHHHhC
Confidence 1468999999999999975
No 20
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=212.90 Aligned_cols=162 Identities=28% Similarity=0.399 Sum_probs=138.9
Q ss_pred CCceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHh
Q 046442 17 LPKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRS 96 (195)
Q Consensus 17 ~~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~ 96 (195)
...+++||||||+.||..+ +++|+ .|.+||+.|.+||..+++.|....+.++ .+||||+.||+|||+.|++.
T Consensus 4 ~~~~lvlvRHGes~wN~e~-~~~G~--~D~~Lte~G~~qA~~~~~~l~~~~~~~~-----~~~tS~l~RakqT~~~il~~ 75 (214)
T KOG0235|consen 4 NTFRLVLVRHGESEWNKEN-IFQGW--IDAPLTEKGEEQAKAAAQRLKDLNIEFD-----VCYTSDLKRAKQTAELILEE 75 (214)
T ss_pred cceEEEEEecCchhhhhhC-ccccc--ccCccChhhHHHHHHHHHHHHhcCCccc-----EEecCHHHHHHHHHHHHHHh
Confidence 3468999999999999998 67775 5889999999999999999999887533 78999999999999999998
Q ss_pred cCCCccccccccCCccccccccccccchhHhHHHHHHh--hcCcc------cCCCCCCCHHHHHHHHHHHHHHHHHhhhh
Q 046442 97 FSRKRIIGVREECRIREQDFGNFQVSERMKVIKETREK--FGRFY------YRFPEGESAADVFDRVSNFLESLWRDIDL 168 (195)
Q Consensus 97 ~~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~--~~~~~------~~~~~~Es~~~~~~R~~~~l~~l~~~~~~ 168 (195)
.+.. .+|+..+.+|+|+.||.++|+.+.+..+..... +.++. -.+|.+||+.++..|+..++++.+..
T Consensus 76 ~~~~-~~pv~~~~~L~ER~yG~l~Gl~~~e~~~~~g~~~~~~~~r~~~~~~~~~p~~EsL~~~~~R~~~~~~e~i~~--- 151 (214)
T KOG0235|consen 76 LKQK-KVPVLYTWRLNERHYGDLQGLNKRETAKRYGEEQVYEDPRLSDLDEIPLPDGESLKDCLDRLLPFWNEEIAK--- 151 (214)
T ss_pred hccC-CcceEechhhchhhhccccCccHHHHHHHcchhccccchhhccCCcCCCCCCccHHHHHHHHHHHHHHhhhh---
Confidence 8743 589999999999999999999999988876655 22222 34678999999999999999998765
Q ss_pred hhhccccCCCCeEEEEeChhhhhhhhC
Q 046442 169 NRLQHDASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 169 ~~~~~~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
....+++|+||+||+.+|+|++
T Consensus 152 -----~~~~gk~Vli~aHGnsLR~i~~ 173 (214)
T KOG0235|consen 152 -----ESKEGKNVLIVAHGNSLRAIVK 173 (214)
T ss_pred -----hhcCCcEEEEEcCcHHHHHHHH
Confidence 3456899999999999999874
No 21
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=100.00 E-value=3.2e-33 Score=240.57 Aligned_cols=158 Identities=17% Similarity=0.165 Sum_probs=127.7
Q ss_pred CCceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHh
Q 046442 17 LPKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRS 96 (195)
Q Consensus 17 ~~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~ 96 (195)
.+|+||||||||+.+|..++ ++| |.|||+.|++||+.+++.|..... ..+. .|||||+.||+|||+.+...
T Consensus 418 ~~m~i~LiRHGeT~~n~~~r-~~G----d~pLt~~G~~qA~~l~~~l~~~~~-~~~~---~V~sSpl~Ra~~TA~~i~~~ 488 (664)
T PTZ00322 418 TPMNLYLTRAGEYVDLLSGR-IGG----NSRLTERGRAYSRALFEYFQKEIS-TTSF---TVMSSCAKRCTETVHYFAEE 488 (664)
T ss_pred CCceEEEEecccchhhhcCc-cCC----CCccCHHHHHHHHHHHHHHHhccC-CCCc---EEEcCCcHHHHHHHHHHHhc
Confidence 35789999999999999884 555 789999999999999999986421 1122 89999999999999999753
Q ss_pred cC-------------CCccccccccCCccccccccccccchhHhHHHHHHhhcC-----cccCCCCCCCHHHHH-HHHHH
Q 046442 97 FS-------------RKRIIGVREECRIREQDFGNFQVSERMKVIKETREKFGR-----FYYRFPEGESAADVF-DRVSN 157 (195)
Q Consensus 97 ~~-------------~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~Es~~~~~-~R~~~ 157 (195)
.. ....+++..+++|+|++||.|+|+++.++...+++.+.. +.+.+|+|||+.++. .|+..
T Consensus 489 ~~~~~~~~~~a~~~~~~~~~~~~~~~~L~Ei~fG~wEG~t~~ei~~~~p~~~~~~~~d~~~~~~P~GES~~d~~~~R~~~ 568 (664)
T PTZ00322 489 SILQQSTASAASSQSPSLNCRVLYFPTLDDINHGDCEGQLLSDVRRTMPNTLQSMKADPYYTAWPNGECIHQVFNARLEP 568 (664)
T ss_pred cccccccccccccccccccccccchhhhCcCCCcccCCCCHHHHHHhCcHHHHHHHhCCCcCCCCCCcCHHHHHHHHHHH
Confidence 10 011356788999999999999999999987776655543 346789999999965 79999
Q ss_pred HHHHHHHhhhhhhhccccCCCCeEEEEeChhhhhhhhC
Q 046442 158 FLESLWRDIDLNRLQHDASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 158 ~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
+++++.. ..++|||||||++|++|++
T Consensus 569 ~i~~l~~------------~~~~ilvVsHg~vir~ll~ 594 (664)
T PTZ00322 569 HIHDIQA------------STTPVLVVSHLHLLQGLYS 594 (664)
T ss_pred HHHHHHc------------cCCCEEEEeCcHHHHHHHH
Confidence 9999843 2478999999999999874
No 22
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.9e-31 Score=193.04 Aligned_cols=161 Identities=24% Similarity=0.295 Sum_probs=136.6
Q ss_pred CceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhc
Q 046442 18 PKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSF 97 (195)
Q Consensus 18 ~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~ 97 (195)
|++++|+|||||+||..+ .+.| |.|.+||+.|.+||...|+.|+..++.+ + .+|||-+.||++|+.++....
T Consensus 1 ~~~Lvl~RHGqSeWN~~N-lFtG--W~Dv~LtekG~~EA~~ag~llk~~~~~~--d---ia~TS~L~RAi~T~~i~L~e~ 72 (230)
T COG0588 1 MMKLVLLRHGQSEWNKEN-LFTG--WVDVDLTEKGISEAKAAGKLLKEEGLEF--D---IAYTSVLKRAIKTLNIVLEES 72 (230)
T ss_pred CceEEEEecCchhhhhcC-ceee--eeecCcchhhHHHHHHHHHHHHHcCCCc--c---eeehHHHHHHHHHHHHHhhhh
Confidence 568999999999999998 5776 5799999999999999999999988743 3 999999999999999999988
Q ss_pred CCCccccccccCCccccccccccccchhHhHHHHHHhhc-----CcccCCC-------------------------CCCC
Q 046442 98 SRKRIIGVREECRIREQDFGNFQVSERMKVIKETREKFG-----RFYYRFP-------------------------EGES 147 (195)
Q Consensus 98 ~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~~~-----~~~~~~~-------------------------~~Es 147 (195)
+.. ++|+....+|+|+.||.+.|++..+..+++.++.- .+...|| ..||
T Consensus 73 d~~-~ipv~kswrLNERhYG~LqGlnK~~t~~kyGeeqv~~wRRsydi~PP~~~~~~~~~~~~d~ry~~~~~~~~p~~Es 151 (230)
T COG0588 73 DQL-WIPVIKSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRRSYDIPPPKLEKDDERSPHRDRRYAHLDIGGLPLTES 151 (230)
T ss_pred ccc-CcchhhHHHhhhhhhhhhhcCChHHHHHHHhHHHHHHHHHhcCCCCCCcccccccccccccccccccccCCCccch
Confidence 643 78999999999999999999999888777755421 2222233 4599
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhhhhhC
Q 046442 148 AADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 148 ~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
..+...|+..+|+..+... ...+++|+||+||..+|+|++
T Consensus 152 Lkdt~~Rv~Pyw~~~I~p~--------l~~Gk~VlI~AHGNSlRaLiK 191 (230)
T COG0588 152 LKDTVERVLPYWEDDIAPN--------LKSGKNVLIVAHGNSLRALIK 191 (230)
T ss_pred HHHHHHHhhHHHHHHhhHH--------HhCCCeEEEEecchhHHHHHH
Confidence 9999999999999988652 357999999999999999873
No 23
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=99.97 E-value=9.9e-31 Score=199.53 Aligned_cols=148 Identities=19% Similarity=0.305 Sum_probs=115.6
Q ss_pred CCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhcCCCccccccccCC
Q 046442 31 GNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSFSRKRIIGVREECR 110 (195)
Q Consensus 31 ~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~~~~~~~~~~~~~~ 110 (195)
+|..+ .++|+ .|.|||+.|++||+.+++.|..... .++ .|||||+.||+|||+.|++.++.. .+++.++++
T Consensus 1 ~N~~~-~~qG~--~D~pLTe~G~~QA~~l~~~L~~~~~--~~d---~iysSpl~Ra~qTA~~i~~~~~~~-~~~~~~~~~ 71 (236)
T PTZ00123 1 WNKEN-RFTGW--TDVPLSEKGVQEAREAGKLLKEKGF--RFD---VVYTSVLKRAIKTAWIVLEELGQL-HVPVIKSWR 71 (236)
T ss_pred CcccC-ceeCC--CCCCCCHHHHHHHHHHHHHHHhcCC--CCC---EEEECChHHHHHHHHHHHHhcCCC-CCCceeCch
Confidence 35555 45554 4899999999999999999986433 233 999999999999999999876532 356788999
Q ss_pred ccccccccccccchhHhHHHHHHh----hc-Cc-------------------------ccCCCCCCCHHHHHHHHHHHHH
Q 046442 111 IREQDFGNFQVSERMKVIKETREK----FG-RF-------------------------YYRFPEGESAADVFDRVSNFLE 160 (195)
Q Consensus 111 L~E~~~g~~~g~~~~~~~~~~~~~----~~-~~-------------------------~~~~~~~Es~~~~~~R~~~~l~ 160 (195)
|+|+++|.|+|+++.++...++.. |. .+ .+.+|+|||+.++..|+..+|+
T Consensus 72 L~E~~~G~~EG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gES~~~~~~Rv~~~l~ 151 (236)
T PTZ00123 72 LNERHYGALQGLNKSETAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPGNDPVYKDIPKDALPNTECLKDTVERVLPYWE 151 (236)
T ss_pred hhhcccccccCCCHHHHHHHccHHHHHHHhcccCCCCCCcccccccccccchhhhccccCCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999988876554432 11 11 1245789999999999999999
Q ss_pred HHHHhhhhhhhccccCCCCeEEEEeChhhhhhhhC
Q 046442 161 SLWRDIDLNRLQHDASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
+++.. ....+++|||||||++|+++++
T Consensus 152 ~li~~--------~~~~~~~vliVsHG~vir~ll~ 178 (236)
T PTZ00123 152 DHIAP--------DILAGKKVLVAAHGNSLRALVK 178 (236)
T ss_pred HHHHH--------HhhCCCeEEEEeCHHHHHHHHH
Confidence 97643 1134689999999999999874
No 24
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=99.95 E-value=3.4e-27 Score=185.04 Aligned_cols=144 Identities=23% Similarity=0.250 Sum_probs=101.6
Q ss_pred CceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhC----CCCCceeEEEEcCcHHHHHHHHHH
Q 046442 18 PKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSG----SANDYRVYFYVSPYERTRSTLREI 93 (195)
Q Consensus 18 ~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~----~~~~~~~~i~sSp~~Ra~qTA~~i 93 (195)
.++||||||||+..+.. ....+.+||+.|++||+.+|+.|+..... ..++ .|||||+.||+|||++|
T Consensus 102 ~~~L~LVRHGq~~~~~~------~d~~~~~LTe~G~~QA~~lg~~L~~~~~~~~~~~~~d---~IysSPL~RA~qTAeiI 172 (299)
T PTZ00122 102 QRQIILVRHGQYINESS------NDDNIKRLTELGKEQARITGKYLKEQFGEILVDKKVK---AIYHSDMTRAKETAEII 172 (299)
T ss_pred eeEEEEEECCCCCCCCC------CCcccCCCCHHHHHHHHHHHHHHHHhhccccccCCCC---EEEEcCcHHHHHHHHHH
Confidence 38999999999654311 11112459999999999999999875210 0233 99999999999999999
Q ss_pred HHhcCCCccccccccCCccccccccccccchhHhHHHHHHhhcCcccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 046442 94 GRSFSRKRIIGVREECRIREQDFGNFQVSERMKVIKETREKFGRFYYRFPEGESAADVFDRVSNFLESLWRDIDLNRLQH 173 (195)
Q Consensus 94 ~~~~~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~ 173 (195)
++.++ .+++.++++|+|. .+..+.. ....+.++++|+ .++.+|+.+++++++.+.
T Consensus 173 a~~~~---~~~v~~d~~LrEG-------~~~~~~~-------~~~~~~~~gee~-~~~~~Rv~~al~~i~~r~------- 227 (299)
T PTZ00122 173 SEAFP---GVRLIEDPNLAEG-------VPCAPDP-------PSRGFKPTIEEI-LEDMKRIEAAFEKYFHRP------- 227 (299)
T ss_pred HHhCC---CCCceeCcccccC-------CccccCc-------cccccCCCcchH-HHHHHHHHHHHHHHHHhc-------
Confidence 88764 2678899999992 2111110 011234455555 666999999999987641
Q ss_pred ccCCCCeEEEEeChhhhhhhhC
Q 046442 174 DASQELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 174 ~~~~~~~ilvVsHg~~i~~ll~ 195 (195)
....++++||||||++|++|+|
T Consensus 228 ~~~~~~~vLVVsHGgvIR~ll~ 249 (299)
T PTZ00122 228 VEDEDSVEIIVCHGNVIRYLVC 249 (299)
T ss_pred ccCCCCeEEEEeCChHHHHHHH
Confidence 0112467899999999999985
No 25
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=99.94 E-value=5.8e-26 Score=162.58 Aligned_cols=116 Identities=38% Similarity=0.469 Sum_probs=96.0
Q ss_pred eEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhcCC
Q 046442 20 RIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSFSR 99 (195)
Q Consensus 20 ~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~~~ 99 (195)
+|||||||++.+|.... +.+ +.|.|||+.|++||+.+++.|..... .++ .|||||+.||+|||+.++..+.
T Consensus 1 ~i~liRHg~~~~~~~~~-~~~--~~d~~Lt~~G~~qa~~~~~~l~~~~~--~~~---~i~~Sp~~Ra~qTa~~l~~~~~- 71 (153)
T cd07067 1 RLYLVRHGESEWNAEGR-FQG--WTDVPLTEKGREQARALGKRLKELGI--KFD---RIYSSPLKRAIQTAEIILEELP- 71 (153)
T ss_pred CEEEEECCCCcccccCc-ccC--CCCCCCCHHHHHHHHHHHHHHHhcCC--CCC---EEEECcHHHHHHHHHHHHHhcC-
Confidence 48999999999987653 222 45899999999999999999987642 233 9999999999999999998762
Q ss_pred CccccccccCCccccccccccccchhHhHHHHHHhhcCcccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCC
Q 046442 100 KRIIGVREECRIREQDFGNFQVSERMKVIKETREKFGRFYYRFPEGESAADVFDRVSNFLESLWRDIDLNRLQHDASQEL 179 (195)
Q Consensus 100 ~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~ 179 (195)
.+++..++.|+| .|+..+++.+.+. ..++
T Consensus 72 --~~~~~~~~~L~e---------------------------------------~R~~~~~~~l~~~----------~~~~ 100 (153)
T cd07067 72 --GLPVEVDPRLRE---------------------------------------ARVLPALEELIAP----------HDGK 100 (153)
T ss_pred --CCCceeCccchH---------------------------------------HHHHHHHHHHHHh----------CCCC
Confidence 256778888888 8999999999764 2578
Q ss_pred eEEEEeChhhhhhhhC
Q 046442 180 NLIIVSHGLTSRVFLM 195 (195)
Q Consensus 180 ~ilvVsHg~~i~~ll~ 195 (195)
+|+|||||++|+.+++
T Consensus 101 ~iliV~H~~~i~~~~~ 116 (153)
T cd07067 101 NVLIVSHGGVLRALLA 116 (153)
T ss_pred eEEEEeChHHHHHHHH
Confidence 9999999999998864
No 26
>KOG4754 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.3e-24 Score=157.19 Aligned_cols=166 Identities=24% Similarity=0.196 Sum_probs=123.0
Q ss_pred CCCCCceEEEEeCCCCCCCcCC----CcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHH
Q 046442 14 RHLLPKRIILVRHGESEGNLNT----GAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRST 89 (195)
Q Consensus 14 ~~~~~~~i~liRHge~~~n~~~----~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qT 89 (195)
+....|+||||||||..+|..+ +.|-...+.|+-||+.|++|+..++..+.+......++ .|++|||+||+||
T Consensus 10 t~~r~KtiyLvRHgQg~HNV~g~~~h~ay~s~~~fD~~LTplG~~Qv~~l~~~~~A~qL~~~ie---liv~SPMrRtLqT 86 (248)
T KOG4754|consen 10 TKNRCKTIYLVRHGQGIHNVAGEEDHKAYWSEDYFDPHLTPLGWKQVDNLRKHLMAKQLPNKIE---LIVVSPMRRTLQT 86 (248)
T ss_pred ccCcceEEEEEeccccccccCcccchhhhhhhhccccccCHHHHHHHHHHhhhhhhhhcCCcee---EEEechHHHHHHH
Confidence 4455799999999999999987 23323345699999999999999999998888765566 9999999999999
Q ss_pred HHHHHHhcCCC---ccccccccCCc----ccccccccc---ccchhHhHHHHHH-hh------cCcccCCCCCCCHHHHH
Q 046442 90 LREIGRSFSRK---RIIGVREECRI----REQDFGNFQ---VSERMKVIKETRE-KF------GRFYYRFPEGESAADVF 152 (195)
Q Consensus 90 A~~i~~~~~~~---~~~~~~~~~~L----~E~~~g~~~---g~~~~~~~~~~~~-~~------~~~~~~~~~~Es~~~~~ 152 (195)
+...+...... ..+++.+.|.+ +|- .|.+. +....+..+.++. .| ..|.+.+...|+.++..
T Consensus 87 ~v~~f~~~~~e~g~~~~p~~vsp~~i~~~rE~-lG~hpCD~r~~v~~~~~lfp~~DFs~~~~dv~~~~~pdy~ed~e~~a 165 (248)
T KOG4754|consen 87 MVIAFGGYLAEDGEDPAPVKVSPPFIAVCRET-LGDHPCDRRSSVTDLMKLFPAYDFSLCETDVDPLKKPDYREDDEESA 165 (248)
T ss_pred HHHHhcceeccCCCcCCceeecchHHHHHHHH-hCCCcccccchhHHHHhhcccccceeeccCcchhccCcchhhHHHHH
Confidence 99988766332 45677888888 662 34433 1112222222211 11 12335666789999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhhhhh
Q 046442 153 DRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSRVFL 194 (195)
Q Consensus 153 ~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~~ll 194 (195)
.|-+.|++++.. .+.+.|.||||+++|+.++
T Consensus 166 ~r~re~~~~l~~-----------r~ek~iavvths~fl~~ll 196 (248)
T KOG4754|consen 166 ARSREFLEWLAK-----------RPEKEIAVVTHSGFLRSLL 196 (248)
T ss_pred HhHHHHHHHHHh-----------CccceEEEEEehHHHHHHH
Confidence 999999999976 4688999999999999764
No 27
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=99.90 E-value=8.3e-23 Score=145.89 Aligned_cols=116 Identities=34% Similarity=0.378 Sum_probs=89.3
Q ss_pred eEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhcCC
Q 046442 20 RIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSFSR 99 (195)
Q Consensus 20 ~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~~~ 99 (195)
+|||||||++.++..+. +.+ +.|.|||+.|++||..+++.|..... .+. .|||||+.||+|||+.++..+..
T Consensus 1 ~i~liRHg~~~~~~~~~-~~~--~~d~~Lt~~G~~qa~~l~~~l~~~~~--~~~---~v~sSp~~R~~~Ta~~~~~~~~~ 72 (153)
T cd07040 1 VLYLVRHGEREPNAEGR-FTG--WGDGPLTEKGRQQARELGKALRERYI--KFD---RIYSSPLKRAIQTAEIILEGLFE 72 (153)
T ss_pred CEEEEeCCCCccccCCC-ccC--CCCCCcCHHHHHHHHHHHHHHHHhCC--CCC---EEEECChHHHHHHHHHHHHHhcC
Confidence 48999999999987653 222 35999999999999999999988632 223 99999999999999999887621
Q ss_pred CccccccccCCccccccccccccchhHhHHHHHHhhcCcccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCC
Q 046442 100 KRIIGVREECRIREQDFGNFQVSERMKVIKETREKFGRFYYRFPEGESAADVFDRVSNFLESLWRDIDLNRLQHDASQEL 179 (195)
Q Consensus 100 ~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~ 179 (195)
. +++..++. .|+..++.+++... ...++
T Consensus 73 ~--~~~~~~~~------------------------------------------~r~~~~~~~~~~~~--------~~~~~ 100 (153)
T cd07040 73 G--LPVEVDPR------------------------------------------ARVLNALLELLARH--------LLDGK 100 (153)
T ss_pred C--CCeEECHH------------------------------------------HHHHHHHHHHHHhh--------CCCCC
Confidence 0 22222222 89999999987641 12478
Q ss_pred eEEEEeChhhhhhhhC
Q 046442 180 NLIIVSHGLTSRVFLM 195 (195)
Q Consensus 180 ~ilvVsHg~~i~~ll~ 195 (195)
+|+||||+++|+.+++
T Consensus 101 ~iliv~H~~~i~~~~~ 116 (153)
T cd07040 101 NVLIVSHGGTIRALLA 116 (153)
T ss_pred EEEEEeCCHHHHHHHH
Confidence 9999999999999874
No 28
>KOG3734 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1.7e-21 Score=147.76 Aligned_cols=164 Identities=22% Similarity=0.204 Sum_probs=119.5
Q ss_pred CCCCceEEEEeCCCCCCCcCCCcccCC----------------------------CCCCCCCChhHHHHHHHHHHHHHhh
Q 046442 15 HLLPKRIILVRHGESEGNLNTGAYATT----------------------------PDNKIPLTPDGIHQGRSCGARLRSL 66 (195)
Q Consensus 15 ~~~~~~i~liRHge~~~n~~~~~~~~~----------------------------~~~d~~Lt~~G~~qa~~~~~~l~~~ 66 (195)
....+.|++|||||+.++..+..|... -..|+|||..|.-||+..|+.|.+.
T Consensus 9 ~~~~~~i~vmRHgERvD~if~~~W~~~~~~~~~~y~~~d~n~p~~l~qr~~~~~~y~~d~pit~~g~~~~~~~gr~l~~a 88 (272)
T KOG3734|consen 9 IDVPRNIFVMRHGERVDNIFGKLWLKTCARPDGKYVPDDMNMPFRLPQRIRSPKGYPIDPPITVSGFIQCKLIGRELLNA 88 (272)
T ss_pred cCCCceEEEEEcccccccccchhhhhhhcCCCCCcCCCCccCCccccccccCcccCccCCCccchhHHHHHHHHHHHHhc
Confidence 456789999999999885544311100 1248999999999999999999988
Q ss_pred hhCCCCCceeEEEEcCcHHHHHHHHHHHHhcCCCccccccccCCccccccccccc-cchhHhHHHHHHhhc----Cc---
Q 046442 67 LSGSANDYRVYFYVSPYERTRSTLREIGRSFSRKRIIGVREECRIREQDFGNFQV-SERMKVIKETREKFG----RF--- 138 (195)
Q Consensus 67 ~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E~~~g~~~g-~~~~~~~~~~~~~~~----~~--- 138 (195)
+.. ++ .||+||..||+|||..+.+.++......+.++|.|.|+..-.-.+ .+..-...++..... .+
T Consensus 89 ~~~--i~---~ifcSPs~r~VqTa~~i~~~~g~e~~~~i~vePgL~e~~~~~~~~~~p~~is~~el~~~~~~VD~~y~P~ 163 (272)
T KOG3734|consen 89 GIA--ID---VIFCSPSLRCVQTAAKIKKGLGIEKKLKIRVEPGLFEPEKWPKDGKFPFFISPDELKFPGFPVDLNYDPV 163 (272)
T ss_pred CCC--cc---eeecCCchhHHHHHHHHHHhhchhcCeeEEecchhcchhhhcccCCCCCcCCHHHHhccCCCcccccchh
Confidence 874 44 999999999999999999999876678899999999975322222 111111111111110 11
Q ss_pred -ccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhhhh
Q 046442 139 -YYRFPEGESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSRVF 193 (195)
Q Consensus 139 -~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~~l 193 (195)
...+-.+||.+++..|+...+++++.+ .++++||||+||..+...
T Consensus 164 ~~~~~~~~es~e~~~~R~~~~~k~i~~k----------~~~~~lLIV~H~~sv~~~ 209 (272)
T KOG3734|consen 164 YKETPRWGESLEDCNDRIQKVFKAIADK----------YPNENLLIVAHGSSVDTC 209 (272)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHHHh----------cCCCceEEEeccchHHHH
Confidence 123456899999999999999999987 567789999999987653
No 29
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=99.87 E-value=3.6e-21 Score=137.45 Aligned_cols=68 Identities=24% Similarity=0.424 Sum_probs=58.0
Q ss_pred ceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhcC
Q 046442 19 KRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSFS 98 (195)
Q Consensus 19 ~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~~ 98 (195)
|+|||||||++.++.. .+.|.+||+.|++||+.+++.|..... .++ .|||||+.||+|||+.+++.++
T Consensus 1 m~l~LvRHg~a~~~~~-------~d~dr~Lt~~G~~qa~~~~~~l~~~~~--~~d---~i~sSp~~Ra~qTa~~l~~~~~ 68 (152)
T TIGR00249 1 MQLFIMRHGDAALDAA-------SDSVRPLTTNGCDESRLVAQWLKGQGV--EIE---RILVSPFVRAEQTAEIVGDCLN 68 (152)
T ss_pred CEEEEEeCCCcccccC-------CCCCCCcCHHHHHHHHHHHHHHHhCCC--CCC---EEEECCcHHHHHHHHHHHHHcC
Confidence 5899999999988754 234899999999999999999987543 234 9999999999999999998875
No 30
>PRK06193 hypothetical protein; Provisional
Probab=99.87 E-value=5.2e-21 Score=141.72 Aligned_cols=128 Identities=18% Similarity=0.154 Sum_probs=92.3
Q ss_pred CCceEEEEeCCCCCCCcCCCcccCCC---CCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHH
Q 046442 17 LPKRIILVRHGESEGNLNTGAYATTP---DNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREI 93 (195)
Q Consensus 17 ~~~~i~liRHge~~~n~~~~~~~~~~---~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i 93 (195)
-..+|||||||++.+|..+. +.+.. +.|.|||+.|++||+.+++.|..... .++ .|||||+.||+|||+.+
T Consensus 41 ~~~~L~LvRHGet~~n~~~~-~~gd~d~~~~~rpLt~~G~~qA~~l~~~L~~~~~--~~d---~V~sSpl~Ra~qTA~il 114 (206)
T PRK06193 41 KGGYVIYFRHAATDRSQADQ-DTSDMDDCSTQRNLSEEGREQARAIGEAFRALAI--PVG---KVISSPYCRAWETAQLA 114 (206)
T ss_pred cCCEEEEEeCccCCCCccCC-cccccccCcCCCCCCHHHHHHHHHHHHHHHhcCC--CCC---EEEECCcHHHHHHHHHH
Confidence 34689999999998887653 32221 23579999999999999999987654 234 89999999999999998
Q ss_pred HHhcCCCccccccccCCccccccccccccchhHhHHHHHHhhcCcccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 046442 94 GRSFSRKRIIGVREECRIREQDFGNFQVSERMKVIKETREKFGRFYYRFPEGESAADVFDRVSNFLESLWRDIDLNRLQH 173 (195)
Q Consensus 94 ~~~~~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~ 173 (195)
+.... ..+++.+.. ...+..|+.+.+..|+..+++++-
T Consensus 115 ~~~~~--------~~~~l~~~~------------------------~~~~~~~~~~~y~~~l~~~I~~l~---------- 152 (206)
T PRK06193 115 FGRHE--------KEIRLNFLN------------------------SEPVPAERNALLKAGLRPLLTTPP---------- 152 (206)
T ss_pred hcccc--------cCccccccc------------------------ccCCChhhHHHHHHHHHHHHhhCC----------
Confidence 64321 011111110 011245788888899999888873
Q ss_pred ccCCCCeEEEEeChhhhhhhh
Q 046442 174 DASQELNLIIVSHGLTSRVFL 194 (195)
Q Consensus 174 ~~~~~~~ilvVsHg~~i~~ll 194 (195)
...++|+||+|+..|+.++
T Consensus 153 --~~~~~vLlVgHnp~i~~l~ 171 (206)
T PRK06193 153 --DPGTNTVLVGHDDNLEAAT 171 (206)
T ss_pred --CCCCeEEEEeCchHHHHHh
Confidence 4577999999999998764
No 31
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=99.85 E-value=3.8e-20 Score=133.03 Aligned_cols=68 Identities=26% Similarity=0.441 Sum_probs=57.5
Q ss_pred ceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhcC
Q 046442 19 KRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSFS 98 (195)
Q Consensus 19 ~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~~ 98 (195)
|+|||||||++.++.. .+.|.|||+.|++||+.++.+|..... .++ .|||||+.||+|||+.++..++
T Consensus 1 m~l~lvRHg~a~~~~~-------~d~~rpLt~~G~~qa~~~~~~l~~~~~--~~d---~i~sSp~~Ra~qTa~~l~~~~~ 68 (159)
T PRK10848 1 MQVFIMRHGDAALDAA-------SDSVRPLTTCGCDESRLMANWLKGQKV--DIE---RVLVSPYLRAEQTLEVVGECLN 68 (159)
T ss_pred CEEEEEeCCCCCCCCC-------CCcCCCcCHHHHHHHHHHHHHHHhCCC--CCC---EEEECCHHHHHHHHHHHHHHhC
Confidence 5799999999988742 234789999999999999999987543 234 9999999999999999988765
No 32
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=4.2e-20 Score=147.84 Aligned_cols=151 Identities=26% Similarity=0.384 Sum_probs=126.7
Q ss_pred CCCCceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHH
Q 046442 15 HLLPKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIG 94 (195)
Q Consensus 15 ~~~~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~ 94 (195)
...+..|||.|||++.+|..++ .+| |.+|++.|.+-|+.+.+.+....... ..|+||++.||+|||+.+.
T Consensus 236 ~~~pR~i~l~r~geS~~n~~gr-igg----ds~ls~~g~~ya~~l~~f~~~~~~~d-----l~vwts~~~rti~ta~~l~ 305 (438)
T KOG0234|consen 236 HTTPRTIYLTRHGESEFNVEGR-IGG----DSPLSERGSQYAKSLIKFVEEQSSSD-----LDVWTSQRKRTIQTAEGLK 305 (438)
T ss_pred ccCCceEEEEecCCCccccccc-cCC----cccccHHHHHHHHHHHHHHhhhcccC-----ceeccchHHHHhhhHhhcC
Confidence 4456799999999999999874 332 89999999999999999998876642 2899999999999999432
Q ss_pred HhcCCCccccccccCCccccccccccccchhHhHHHHHHhhc-----CcccCCCCCCCHHHHHHHHHHHHHHHHHhhhhh
Q 046442 95 RSFSRKRIIGVREECRIREQDFGNFQVSERMKVIKETREKFG-----RFYYRFPEGESAADVFDRVSNFLESLWRDIDLN 169 (195)
Q Consensus 95 ~~~~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~ 169 (195)
.+ ..+.....|+|++.|.++|++..++...++.++. .+.++.|+|||+.|+..|.+..+-++-+
T Consensus 306 --~~----~~~~~~~~Ldei~ag~~~g~t~eeI~~~~p~e~~~r~~dky~yry~~gESy~D~v~RlePvImElEr----- 374 (438)
T KOG0234|consen 306 --LD----YSVEQWKALDEIDAGVCEGLTYEEIETNYPEEFALRDKDKYRYRYPGGESYSDLVQRLEPVIMELER----- 374 (438)
T ss_pred --cc----hhhhhHhhcCcccccccccccHHHHHHhCchhhhhccCCcceeecCCCCCHHHHHHhhhhHhHhhhh-----
Confidence 11 1235667899999999999999999998888875 4668999999999999999999999854
Q ss_pred hhccccCCCCeEEEEeChhhhhhhh
Q 046442 170 RLQHDASQELNLIIVSHGLTSRVFL 194 (195)
Q Consensus 170 ~~~~~~~~~~~ilvVsHg~~i~~ll 194 (195)
..+|+|+||..+|++|+
T Consensus 375 --------~~~Vlvi~Hqavircll 391 (438)
T KOG0234|consen 375 --------QENVLVITHQAVIRCLL 391 (438)
T ss_pred --------cccEEEEecHHHHHHHH
Confidence 34599999999999986
No 33
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=99.83 E-value=1.2e-19 Score=133.26 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=80.5
Q ss_pred CceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhc
Q 046442 18 PKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSF 97 (195)
Q Consensus 18 ~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~ 97 (195)
-++||||||||+.....+ ... .+ +.|||+.|++||+.+++.|+..... + .|||||+.||+|||+.++..
T Consensus 54 ~~~L~LiRHGet~~~~~~--~~~-sD-~RpLTerG~~qA~~lg~~L~~~~~~---d---~I~sSpa~Ra~qTAe~ia~~- 122 (201)
T PRK15416 54 HPVVVLFRHAERCDRSDN--QCL-SD-KTGITVKGTQDARELGKAFSADIPD---Y---DLYSSNTVRTIQSATWFSAG- 122 (201)
T ss_pred CCEEEEEeCccccCccCC--CCC-CC-CCCCCHHHHHHHHHHHHHHhCCCCC---C---EEEECCCHHHHHHHHHHhcC-
Confidence 357999999998322211 111 12 2799999999999999999864331 2 89999999999999999752
Q ss_pred CCCccccccccCCccccccccccccchhHhHHHHHHhhcCcccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhccccCC
Q 046442 98 SRKRIIGVREECRIREQDFGNFQVSERMKVIKETREKFGRFYYRFPEGESAADVFDRVSNFLESLWRDIDLNRLQHDASQ 177 (195)
Q Consensus 98 ~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~ 177 (195)
.++.++++|.|.+ .+...++.+++.+ .+
T Consensus 123 -----~~v~~~~~Lye~~-------------------------------------~~~~~~i~~~i~~----------~~ 150 (201)
T PRK15416 123 -----KKLTVDKRLSDCG-------------------------------------NGIYSAIKDLQRK----------SP 150 (201)
T ss_pred -----CCcEecHHHhhcC-------------------------------------chhHHHHHHHHHh----------CC
Confidence 3566677777654 2233445555543 24
Q ss_pred CCeEEEEeChhhhhhhh
Q 046442 178 ELNLIIVSHGLTSRVFL 194 (195)
Q Consensus 178 ~~~ilvVsHg~~i~~ll 194 (195)
+++|+||+|...+..|.
T Consensus 151 ~~tVLIVGHnp~i~~La 167 (201)
T PRK15416 151 DKNIVIFTHNHCLTYIA 167 (201)
T ss_pred CCEEEEEeCchhHHHHH
Confidence 58999999999887653
No 34
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=99.79 E-value=2.3e-18 Score=122.47 Aligned_cols=71 Identities=28% Similarity=0.324 Sum_probs=63.0
Q ss_pred CceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhc
Q 046442 18 PKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSF 97 (195)
Q Consensus 18 ~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~ 97 (195)
||+|||+|||++.+...+ ..+.|.+||+.|+++|+.+|+.|+.... .|+ .|+|||+.||+|||+.+++.+
T Consensus 1 m~~L~LmRHgkA~~~~~~-----~~D~dR~Lt~~G~~ea~~~a~~L~~~~~--~~D---~VL~Spa~Ra~QTae~v~~~~ 70 (163)
T COG2062 1 MMRLYLMRHGKAEWAAPG-----IADFDRPLTERGRKEAELVAAWLAGQGV--EPD---LVLVSPAVRARQTAEIVAEHL 70 (163)
T ss_pred CceEEEeecccccccCCC-----CCCccCcCCHHHHHHHHHHHHHHHhcCC--CCC---EEEeChhHHHHHHHHHHHHhh
Confidence 679999999999997664 1356899999999999999999999887 345 999999999999999999987
Q ss_pred C
Q 046442 98 S 98 (195)
Q Consensus 98 ~ 98 (195)
+
T Consensus 71 ~ 71 (163)
T COG2062 71 G 71 (163)
T ss_pred C
Confidence 6
No 35
>KOG4609 consensus Predicted phosphoglycerate mutase [General function prediction only]
Probab=99.77 E-value=2e-18 Score=125.32 Aligned_cols=142 Identities=20% Similarity=0.165 Sum_probs=99.3
Q ss_pred CCceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHh
Q 046442 17 LPKRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRS 96 (195)
Q Consensus 17 ~~~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~ 96 (195)
....|+||||||-.. .+. -..||+.|++||+.+|++|++.++.++ .|..|.|.||.+||.+|.+.
T Consensus 93 atRhI~LiRHgeY~~--~g~--------~~hLTelGReQAE~tGkRL~elglk~d-----~vv~StM~RA~ETadIIlk~ 157 (284)
T KOG4609|consen 93 ATRHIFLIRHGEYHV--DGS--------LEHLTELGREQAELTGKRLAELGLKFD-----KVVASTMVRATETADIILKH 157 (284)
T ss_pred hhceEEEEeccceec--cCc--------hhhcchhhHHHHHHHhHHHHHcCCchh-----hhhhhhhhhhHHHHHHHHHh
Confidence 457999999999433 221 138999999999999999999988644 89999999999999999999
Q ss_pred cCCCccccccccCCccccccccccccchhHhHHHHHHhhcCcccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhccccC
Q 046442 97 FSRKRIIGVREECRIREQDFGNFQVSERMKVIKETREKFGRFYYRFPEGESAADVFDRVSNFLESLWRDIDLNRLQHDAS 176 (195)
Q Consensus 97 ~~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~ 176 (195)
++. .+.....+.|+|=. .+.+.+... .+++... .+..-..|++.++..++.+ ......
T Consensus 158 l~d--~lk~~s~~ll~EGa--P~ppdPp~k------------~wrp~~~-qy~rdgaRIEaafRryfhR-----A~p~Qe 215 (284)
T KOG4609|consen 158 LPD--DLKRVSCPLLREGA--PYPPDPPVK------------HWRPLDP-QYYRDGARIEAAFRRYFHR-----ASPSQE 215 (284)
T ss_pred CCC--ccceecccccccCC--CCCCCCCcc------------cCCccCh-HhhhcchHHHHHHHHHHhh-----cCcccc
Confidence 883 35555666677721 122211111 0111111 1122247889888888764 233344
Q ss_pred CCCeEEEEeChhhhhhhhC
Q 046442 177 QELNLIIVSHGLTSRVFLM 195 (195)
Q Consensus 177 ~~~~ilvVsHg~~i~~ll~ 195 (195)
+++-.|||+|+++|+.++|
T Consensus 216 edSy~liV~HaNVIRY~ic 234 (284)
T KOG4609|consen 216 EDSYELIVCHANVIRYFIC 234 (284)
T ss_pred cccEEEEEeecchhhhhhh
Confidence 5778899999999999988
No 36
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=98.53 E-value=3.4e-07 Score=70.24 Aligned_cols=66 Identities=24% Similarity=0.234 Sum_probs=53.2
Q ss_pred ceEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCCC-----CCceeEEEEcCcHHHHHHHHHH
Q 046442 19 KRIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGSA-----NDYRVYFYVSPYERTRSTLREI 93 (195)
Q Consensus 19 ~~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~-----~~~~~~i~sSp~~Ra~qTA~~i 93 (195)
+.++++|||++.- ..||..|++|+..+|++++..-.... -...+.+++|+..||+|||+.+
T Consensus 4 ~v~~~~RHg~r~p--------------~~LT~~G~~q~~~~G~~lr~~y~~~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~ 69 (242)
T cd07061 4 QVQVLSRHGDRYP--------------GELTPFGRQQAFELGRYFRQRYGELLLLHSYNRSDLYIRSSDSQRTLQSAQAF 69 (242)
T ss_pred EEEEEEecCCCCc--------------hhhhHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEEECCCcHHHHHHHHH
Confidence 4689999999843 36999999999999999987554211 1134589999999999999999
Q ss_pred HHhcC
Q 046442 94 GRSFS 98 (195)
Q Consensus 94 ~~~~~ 98 (195)
+..+-
T Consensus 70 ~~gl~ 74 (242)
T cd07061 70 LAGLF 74 (242)
T ss_pred HHhcC
Confidence 99885
No 37
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=98.03 E-value=1.8e-05 Score=63.35 Aligned_cols=52 Identities=29% Similarity=0.374 Sum_probs=43.2
Q ss_pred CCChhHHHHHHHHHHHHHhhhhCCCCC----ceeEEEEcCcHHHHHHHHHHHHhcC
Q 046442 47 PLTPDGIHQGRSCGARLRSLLSGSAND----YRVYFYVSPYERTRSTLREIGRSFS 98 (195)
Q Consensus 47 ~Lt~~G~~qa~~~~~~l~~~~~~~~~~----~~~~i~sSp~~Ra~qTA~~i~~~~~ 98 (195)
.||+.|.+|...+|++++..-....++ ..+.|+||...||++||+.++.++-
T Consensus 62 ~LT~~G~~q~~~lG~~lr~~Y~~l~~~~~~~~~v~vrSt~~~Rt~~Sa~af~~Gl~ 117 (347)
T PF00328_consen 62 QLTPRGMEQHYQLGKRLRERYPGLFPDNYNPEQVYVRSTNKQRTIQSAQAFLQGLY 117 (347)
T ss_dssp SBTHHHHHHHHHHHHHHHHHHHTSSTSSS-TTTEEEEEESSHHHHHHHHHHHHHHS
T ss_pred cccchhhhHHHHHHHHHHHHHHHhccccccccceeEEEeccchHHHHHHHHHHHHh
Confidence 499999999999999999876532222 3468999999999999999998874
No 38
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=97.62 E-value=0.00052 Score=56.74 Aligned_cols=82 Identities=21% Similarity=0.161 Sum_probs=55.4
Q ss_pred CCCceEEEEeCCCCCCCcCC---------CcccCCCCCCCCCChhHHHHHHHHHHHHHhhhhCC--------CCCceeEE
Q 046442 16 LLPKRIILVRHGESEGNLNT---------GAYATTPDNKIPLTPDGIHQGRSCGARLRSLLSGS--------ANDYRVYF 78 (195)
Q Consensus 16 ~~~~~i~liRHge~~~n~~~---------~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~--------~~~~~~~i 78 (195)
..-+.++|.|||-+.--... +-|..|+-..-.||.+|..+...+|++++...... .....+.+
T Consensus 30 ~L~~vvilsRHg~R~P~~~~~~~l~~~t~~~Wp~w~~~~G~LT~~G~~~~~~~G~~~r~~~~~~~ll~~~~cp~~~~v~~ 109 (413)
T PRK10173 30 QLQQVLMMSRHNLRAPLANNGSVLEQSTPNAWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAQQGLVKSGECPPPDTVYA 109 (413)
T ss_pred eEEEEEEEeecccCCCCCCcchhhhhcCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCeEEE
Confidence 34578999999965432221 11222221234699999999999999887655321 11124689
Q ss_pred EEcCcHHHHHHHHHHHHhc
Q 046442 79 YVSPYERTRSTLREIGRSF 97 (195)
Q Consensus 79 ~sSp~~Ra~qTA~~i~~~~ 97 (195)
++++..||++||+.++..+
T Consensus 110 ~a~~~~RT~~Sa~afl~Gl 128 (413)
T PRK10173 110 YANSLQRTVATAQFFITGA 128 (413)
T ss_pred EeCCchHHHHHHHHHHHhc
Confidence 9999999999998887665
No 39
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=97.60 E-value=0.0012 Score=54.73 Aligned_cols=83 Identities=22% Similarity=0.070 Sum_probs=55.2
Q ss_pred CCCCceEEEEeCCCCCCCcCCC---cccCCCC-----CCCCCChhHHHHHHHHHHHHHhhhhC--CCCC------ceeEE
Q 046442 15 HLLPKRIILVRHGESEGNLNTG---AYATTPD-----NKIPLTPDGIHQGRSCGARLRSLLSG--SAND------YRVYF 78 (195)
Q Consensus 15 ~~~~~~i~liRHge~~~n~~~~---~~~~~~~-----~d~~Lt~~G~~qa~~~~~~l~~~~~~--~~~~------~~~~i 78 (195)
....+.++|.|||-+.-..... -+....| ..-.||..|..|...+|++++..... +.++ ..+.|
T Consensus 32 ~~L~~Vvil~RHG~RaP~~~~~~~~~~t~~~w~~W~~~~GqLT~~G~~~~~~lG~~lR~rY~~~~lL~~~~c~~~~~v~v 111 (436)
T PRK10172 32 LKLESVVIVSRHGVRAPTKATQLMQDVTPDAWPQWPVKLGWLTPRGGELVTLLGHYQRQRLVADGLLAAKGCPQPGQVAA 111 (436)
T ss_pred CeEEEEEEEeeCCCCCCCCCCcccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEE
Confidence 3455678999999754322110 1111112 12469999999999999988876653 1111 23588
Q ss_pred EEcCcHHHHHHHHHHHHhc
Q 046442 79 YVSPYERTRSTLREIGRSF 97 (195)
Q Consensus 79 ~sSp~~Ra~qTA~~i~~~~ 97 (195)
++++..||+.||+.++..+
T Consensus 112 ~a~~~~RTi~SAqafl~Gl 130 (436)
T PRK10172 112 IADVDQRTRKTGEAFLAGL 130 (436)
T ss_pred EeCCchHHHHHHHHHHHhc
Confidence 8889999999999887766
No 40
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=97.53 E-value=0.00052 Score=56.75 Aligned_cols=79 Identities=20% Similarity=0.139 Sum_probs=54.5
Q ss_pred CCCceEEEEeCCCCCC-----CcCCCcc----cCCCCCCCCCChhHHHHHHHHHHHHHh---hhhCC---CC-CceeEEE
Q 046442 16 LLPKRIILVRHGESEG-----NLNTGAY----ATTPDNKIPLTPDGIHQGRSCGARLRS---LLSGS---AN-DYRVYFY 79 (195)
Q Consensus 16 ~~~~~i~liRHge~~~-----n~~~~~~----~~~~~~d~~Lt~~G~~qa~~~~~~l~~---~~~~~---~~-~~~~~i~ 79 (195)
.....-.+.|||.+.- ..+. .. .+.+| -.||+.|.+|+..+|+.|+. ....+ .. ...+.|.
T Consensus 33 ~Lefv~~i~RHGdRaP~~~~yp~dp-~~~~~~~~~G~--GqLT~~G~~Q~~~LG~~LR~rYvr~~~fL~~~y~~~ev~iR 109 (411)
T KOG3720|consen 33 ELEFVQVIFRHGDRAPVDTPYPLDP-FKEEDFWPRGW--GQLTDRGMEQMFELGRFLRKRYVRYGNFLSPKYNPKEVYIR 109 (411)
T ss_pred ceEEEEEEeecCCCCcccCCCCCCc-ccccccCCCCc--chhhHHHHHHHHHHHHHHHHHHhhccccCCcccCcceEEEe
Confidence 3446778899998652 2111 11 11112 46999999999999999998 32211 11 2346899
Q ss_pred EcCcHHHHHHHHHHHHhc
Q 046442 80 VSPYERTRSTLREIGRSF 97 (195)
Q Consensus 80 sSp~~Ra~qTA~~i~~~~ 97 (195)
||+.-||+.||+.++..+
T Consensus 110 Std~nRtl~SAqs~laGl 127 (411)
T KOG3720|consen 110 STDVNRTLMSAQSVLAGL 127 (411)
T ss_pred cCCccHHHHHHHHHHHhh
Confidence 999999999999988776
No 41
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=95.82 E-value=0.013 Score=51.23 Aligned_cols=53 Identities=23% Similarity=0.234 Sum_probs=42.8
Q ss_pred CCCChhHHHHHHHHHHHHHhhhhC----------CCCCceeEEEEcCcHHHHHHHHHHHHhcC
Q 046442 46 IPLTPDGIHQGRSCGARLRSLLSG----------SANDYRVYFYVSPYERTRSTLREIGRSFS 98 (195)
Q Consensus 46 ~~Lt~~G~~qa~~~~~~l~~~~~~----------~~~~~~~~i~sSp~~Ra~qTA~~i~~~~~ 98 (195)
-.||..|+.||++||+.|+..... .....+..||+|.-.|.+-||+.+++++-
T Consensus 510 GelT~agr~QAeeLGr~FR~~~~gg~g~gllrLhst~rhDlKIYaSdEgRVqmtAaaFAkgLL 572 (1018)
T KOG1057|consen 510 GELTHAGRYQAEELGRQFRCDYPGGQGLGLLRLHSTYRHDLKIYASDEGRVQMTAAAFAKGLL 572 (1018)
T ss_pred CEecchhHhhHHHHHHHHHhcCCCCCCcceeeehhhhhccceeEecCcchHHHHHHHHHHHHH
Confidence 359999999999999999865441 12234458999999999999999998774
No 42
>KOG1382 consensus Multiple inositol polyphosphate phosphatase [General function prediction only]
Probab=91.43 E-value=0.56 Score=39.08 Aligned_cols=54 Identities=9% Similarity=0.066 Sum_probs=41.3
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhhC-CCCCceeEEEEcCcHHHHHHHHHHHHhcCC
Q 046442 45 KIPLTPDGIHQGRSCGARLRSLLSG-SANDYRVYFYVSPYERTRSTLREIGRSFSR 99 (195)
Q Consensus 45 d~~Lt~~G~~qa~~~~~~l~~~~~~-~~~~~~~~i~sSp~~Ra~qTA~~i~~~~~~ 99 (195)
+..|...|+..|..+++.|...... ..+..- .|+++-..||..||+..+..+..
T Consensus 130 ~~~l~~~g~~~a~R~~r~f~~~y~~~~n~~~y-~i~tt~~~R~~dSA~~F~~GLfg 184 (467)
T KOG1382|consen 130 VDQLEDEGRMLAKRLARRFPALYYELENPTVY-NINTTASQRVVDSAQAFAYGLFG 184 (467)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhcCCceE-EeeccchHHHHHHHHHHHhhhcc
Confidence 3457788999999999988876621 122211 79999999999999999998874
No 43
>TIGR02935 probable nitrogen fixation protein. Members of this protein family, called DUF269 by Pfam model pfam03270, are strictly limited to nitrogen-fixing species, although not universal among them. The gene typically is found next to the nifX gene (see TIGRFAMs model TIGR02663).
Probab=73.66 E-value=4 Score=28.48 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=43.0
Q ss_pred ccccccccchhHhHHHHHHhhcCcccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhhhhh
Q 046442 115 DFGNFQVSERMKVIKETREKFGRFYYRFPEGESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSRVFL 194 (195)
Q Consensus 115 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~~ll 194 (195)
.||.|++.+..++...+.-.-..-.-.+-.|+.-.+...|+..|.+.+....++... .--..++=++|-|+-++++
T Consensus 17 tyG~w~~~sDe~lL~pfIvtke~rr~ipi~gdpDp~tl~Ri~~Fy~Ava~~IEk~TG----~m~~~~~~l~hEGFGr~ll 92 (140)
T TIGR02935 17 TYGAWEGKSDAELLAPYIVTKEERREIPIIGDPDPETLWRIELFYNAVALAIEKRTG----LMASPMMKLHHEGFGRVLL 92 (140)
T ss_pred CccccCCCChHHHHHhhcCCHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC----CcchhhhccCCcCcceEEE
Confidence 389999988777655443221111123334666777888999999888766554220 1123344455555544443
No 44
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=70.29 E-value=9.1 Score=33.53 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChh
Q 046442 144 EGESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGL 188 (195)
Q Consensus 144 ~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~ 188 (195)
..|...++..|++..++.+... ..++.|+||+|..
T Consensus 188 ~le~rd~YF~rLK~lIE~ay~~----------nggkKVVLV~HSM 222 (642)
T PLN02517 188 NTEVRDQTLSRLKSNIELMVAT----------NGGKKVVVVPHSM 222 (642)
T ss_pred chhhhhHHHHHHHHHHHHHHHH----------cCCCeEEEEEeCC
Confidence 4577788899999999988653 3478999999975
No 45
>KOG3672 consensus Histidine acid phosphatase [General function prediction only]
Probab=68.73 E-value=18 Score=29.86 Aligned_cols=50 Identities=20% Similarity=0.190 Sum_probs=36.9
Q ss_pred CCChhHHHHHHHHHHHHHhhhhCC----CC-Cc---eeEEEEcCcHHHHHHHHHHHHh
Q 046442 47 PLTPDGIHQGRSCGARLRSLLSGS----AN-DY---RVYFYVSPYERTRSTLREIGRS 96 (195)
Q Consensus 47 ~Lt~~G~~qa~~~~~~l~~~~~~~----~~-~~---~~~i~sSp~~Ra~qTA~~i~~~ 96 (195)
.||..|.-|--.+|+.+...-... .| ++ +..|+|+-+.|+.|+|-.+.-.
T Consensus 168 ~LT~~G~~QhL~~G~~~r~~Y~k~~lk~~pN~~sv~~lyv~TT~y~RT~QSaLA~lf~ 225 (487)
T KOG3672|consen 168 MLTAEGALQHLRLGKYFRHRYEKTKLKADPNQRSVADLYVVTTKYNRTVQSALAFLFL 225 (487)
T ss_pred ceeHHhHHHHHhhhHHHHHHHhhccccCCccccccceeEEEeccccHHHHHHHHHHHH
Confidence 499999999999999987543321 11 11 1269999999999999887533
No 46
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=67.77 E-value=5.7 Score=30.93 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhh
Q 046442 144 EGESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSR 191 (195)
Q Consensus 144 ~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~ 191 (195)
...|+++...++++.++...+ -...|++.+||++|.
T Consensus 190 ~~~sl~~a~~~~~~i~~aa~~------------v~~dii~l~hGGPI~ 225 (268)
T PF09370_consen 190 TALSLEEAAERIQEIFDAARA------------VNPDIIVLCHGGPIA 225 (268)
T ss_dssp -S--HHHHHHHHHHHHHHHHC------------C-TT-EEEEECTTB-
T ss_pred ccCCHHHHHHHHHHHHHHHHH------------hCCCeEEEEeCCCCC
Confidence 367999999999999988753 367789999999985
No 47
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=60.95 E-value=48 Score=23.76 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=27.4
Q ss_pred EEEEcCcHHHHHHHHHHHHhcCCCccccccccCC-cccc
Q 046442 77 YFYVSPYERTRSTLREIGRSFSRKRIIGVREECR-IREQ 114 (195)
Q Consensus 77 ~i~sSp~~Ra~qTA~~i~~~~~~~~~~~~~~~~~-L~E~ 114 (195)
++|+|-.-.|.+=|+.|++.++....+++...+. +.+.
T Consensus 2 IvYsS~TGNTkkvA~aI~~~l~~~~~~~~~~~~~~~~~y 40 (160)
T PF12641_consen 2 IVYSSRTGNTKKVAEAIAEALGAKDIVSVEEPPEDLEDY 40 (160)
T ss_pred EEEECCCChHHHHHHHHHHHCCCceeEeccccccCCCCC
Confidence 6999999999999999999998632333433333 4443
No 48
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=58.44 E-value=23 Score=23.79 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=17.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 046442 142 FPEGESAADVFDRVSNFLESL 162 (195)
Q Consensus 142 ~~~~Es~~~~~~R~~~~l~~l 162 (195)
...+++.+++.+++.+.++++
T Consensus 35 ~~~~~~~~~~~~~l~~~i~~~ 55 (116)
T TIGR00824 35 FVPGENAETLQEKYNAALADL 55 (116)
T ss_pred cCCCcCHHHHHHHHHHHHHhc
Confidence 345789999999999999886
No 49
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=58.39 E-value=11 Score=27.69 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChh
Q 046442 146 ESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGL 188 (195)
Q Consensus 146 Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~ 188 (195)
-+.+++.+|+..|++.+-+. +++..||+|+|-.
T Consensus 71 ~~~~~~~~~~~~fv~~iR~~----------hP~tPIllv~~~~ 103 (178)
T PF14606_consen 71 MSPEEFRERLDGFVKTIREA----------HPDTPILLVSPIP 103 (178)
T ss_dssp CCTTTHHHHHHHHHHHHHTT-----------SSS-EEEEE---
T ss_pred CCHHHHHHHHHHHHHHHHHh----------CCCCCEEEEecCC
Confidence 35568889999999999754 6788999999754
No 50
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=55.69 E-value=19 Score=27.74 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhhh
Q 046442 145 GESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSRV 192 (195)
Q Consensus 145 ~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~~ 192 (195)
-+|+++..+|+.+.+..+ .+++..|+|+|+++...
T Consensus 126 i~s~~eA~~~ive~~~~~-------------~~~~~~VliaH~~~~G~ 160 (238)
T cd07397 126 VISLEESAQRIIAAAKKA-------------PPDLPLILLAHNGPSGL 160 (238)
T ss_pred CCCHHHHHHHHHHHhhhc-------------CCCCCeEEEeCcCCcCC
Confidence 356677666666666422 45778899999987543
No 51
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=53.08 E-value=24 Score=29.87 Aligned_cols=38 Identities=11% Similarity=0.355 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhh
Q 046442 143 PEGESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTS 190 (195)
Q Consensus 143 ~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i 190 (195)
.+.|-.+++..+++..++..... ..++.|+||+|..=.
T Consensus 156 ~~~e~rd~yl~kLK~~iE~~~~~----------~G~kkVvlisHSMG~ 193 (473)
T KOG2369|consen 156 HNSEERDQYLSKLKKKIETMYKL----------NGGKKVVLISHSMGG 193 (473)
T ss_pred CChhHHHHHHHHHHHHHHHHHHH----------cCCCceEEEecCCcc
Confidence 34567777788888888877654 456999999998643
No 52
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=52.76 E-value=38 Score=26.24 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhh
Q 046442 149 ADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTS 190 (195)
Q Consensus 149 ~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i 190 (195)
..|++++..-+.+++++ +..||+|||..-.
T Consensus 180 ~~F~~K~~~rl~e~~~~------------~~tiv~VSHd~~~ 209 (249)
T COG1134 180 AAFQEKCLERLNELVEK------------NKTIVLVSHDLGA 209 (249)
T ss_pred HHHHHHHHHHHHHHHHc------------CCEEEEEECCHHH
Confidence 36678888888888653 5899999998643
No 53
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=51.35 E-value=47 Score=25.20 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhh
Q 046442 144 EGESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSR 191 (195)
Q Consensus 144 ~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~ 191 (195)
.++....+.++..+++++.+++ ..++.+|||||-.+..
T Consensus 140 ~~~~~~~~~~~~l~~l~~~l~~----------~~~~~~ivvtH~pP~~ 177 (239)
T TIGR03729 140 RPMSDPERTAIVLKQLKKQLNQ----------LDNKQVIFVTHFVPHR 177 (239)
T ss_pred CCCChHHHHHHHHHHHHHHHHh----------cCCCCEEEEEcccchH
Confidence 3455667777777777777654 3457899999976543
No 54
>PF13422 DUF4110: Domain of unknown function (DUF4110)
Probab=51.20 E-value=33 Score=22.37 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=22.2
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHh
Q 046442 138 FYYRFPEGESAADVFDRVSNFLESLWRD 165 (195)
Q Consensus 138 ~~~~~~~~Es~~~~~~R~~~~l~~l~~~ 165 (195)
+...|-.+||+.+|+.|...+|...+..
T Consensus 8 ~~ptP~p~EsLr~Ff~RT~~~W~~~a~~ 35 (96)
T PF13422_consen 8 WLPTPKPFESLRDFFARTSEYWQEWAIE 35 (96)
T ss_pred CCCCCCCCCcHHHHHHHhHHHHHHHHHH
Confidence 3445556999999999999988887654
No 55
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=49.36 E-value=26 Score=29.03 Aligned_cols=31 Identities=10% Similarity=0.513 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChh
Q 046442 147 SAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGL 188 (195)
Q Consensus 147 s~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~ 188 (195)
...++..++++.+++..+. .++.|+||+|..
T Consensus 98 ~~~~~~~~lk~~ie~~~~~-----------~~~kv~li~HSm 128 (389)
T PF02450_consen 98 ERDEYFTKLKQLIEEAYKK-----------NGKKVVLIAHSM 128 (389)
T ss_pred hHHHHHHHHHHHHHHHHHh-----------cCCcEEEEEeCC
Confidence 5557778888888877653 388999999964
No 56
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=48.54 E-value=28 Score=19.32 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhh
Q 046442 147 SAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTS 190 (195)
Q Consensus 147 s~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i 190 (195)
+..++..++.+.++.+.. ++.|+|.-||...
T Consensus 3 ~~te~r~~~~~~l~~v~~-------------~~pv~It~~g~~~ 33 (52)
T TIGR01552 3 SLSEAKNKLGELLKRVRD-------------GEPVTITKRGRPV 33 (52)
T ss_pred CHHHHHHHHHHHHHHHHC-------------CCCEEEEECCcce
Confidence 467788888888888742 3378888887754
No 57
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=46.86 E-value=1.2e+02 Score=26.12 Aligned_cols=86 Identities=14% Similarity=0.326 Sum_probs=48.1
Q ss_pred CcHHHHHHHHHHHHhcCCCccccccccCCccccccccccccchhHhHHHHHHhhcCcccCCC-CCCCHHHHHHHHHHHHH
Q 046442 82 PYERTRSTLREIGRSFSRKRIIGVREECRIREQDFGNFQVSERMKVIKETREKFGRFYYRFP-EGESAADVFDRVSNFLE 160 (195)
Q Consensus 82 p~~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~-~~Es~~~~~~R~~~~l~ 160 (195)
++..+.+=+..+.+.++ +++..+....+...|. ..+-++.+.+...-.-.-+.-| .-=+..++ +++-..++
T Consensus 113 ~~~~~~~~i~~l~~~yG----l~vdp~~~V~dLsVG~---qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~-~~lf~~l~ 184 (501)
T COG3845 113 DRRQARARIKELSERYG----LPVDPDAKVADLSVGE---QQRVEILKALYRGARLLILDEPTAVLTPQEA-DELFEILR 184 (501)
T ss_pred CHHHHHHHHHHHHHHhC----CCCCccceeecCCcch---hHHHHHHHHHhcCCCEEEEcCCcccCCHHHH-HHHHHHHH
Confidence 45567777777777777 5666666677776665 2233444444332211111112 12233332 45555566
Q ss_pred HHHHhhhhhhhccccCCCCeEEEEeCh
Q 046442 161 SLWRDIDLNRLQHDASQELNLIIVSHG 187 (195)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~~ilvVsHg 187 (195)
.+.+ .++.|+++||-
T Consensus 185 ~l~~------------~G~tIi~ITHK 199 (501)
T COG3845 185 RLAA------------EGKTIIFITHK 199 (501)
T ss_pred HHHH------------CCCEEEEEecc
Confidence 5543 59999999994
No 58
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=46.83 E-value=35 Score=27.28 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=11.6
Q ss_pred CCCCeEEEEeChhhh
Q 046442 176 SQELNLIIVSHGLTS 190 (195)
Q Consensus 176 ~~~~~ilvVsHg~~i 190 (195)
..+++|||++||.--
T Consensus 190 ~~~~~ivlIg~G~gA 204 (310)
T PF12048_consen 190 QGGKNIVLIGHGTGA 204 (310)
T ss_pred cCCceEEEEEeChhH
Confidence 456779999999753
No 59
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=46.66 E-value=45 Score=25.26 Aligned_cols=39 Identities=10% Similarity=0.231 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChh
Q 046442 145 GESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGL 188 (195)
Q Consensus 145 ~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~ 188 (195)
|..+.+..+-+.+.++.+++.+ .....+.+.|++|+|..
T Consensus 56 g~~l~~q~~~~~~~i~~i~~~~-----~~~~~~~~~vilVgHSm 94 (225)
T PF07819_consen 56 GRTLQRQAEFLAEAIKYILELY-----KSNRPPPRSVILVGHSM 94 (225)
T ss_pred cccHHHHHHHHHHHHHHHHHhh-----hhccCCCCceEEEEEch
Confidence 4555555566666666665542 12235688999999963
No 60
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=43.81 E-value=40 Score=26.63 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=11.6
Q ss_pred CCCeEEEEeChhhh
Q 046442 177 QELNLIIVSHGLTS 190 (195)
Q Consensus 177 ~~~~ilvVsHg~~i 190 (195)
.+..|++||||++-
T Consensus 46 ~g~~vilVssGAv~ 59 (284)
T cd04256 46 QGREVILVTSGAVA 59 (284)
T ss_pred CCCEEEEEeeCcHH
Confidence 47899999999863
No 61
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=39.63 E-value=19 Score=20.71 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=19.3
Q ss_pred eEEEEeCCCCCCCcCCCcccCCCCCCCCCChhHHHHHHHH
Q 046442 20 RIILVRHGESEGNLNTGAYATTPDNKIPLTPDGIHQGRSC 59 (195)
Q Consensus 20 ~i~liRHge~~~n~~~~~~~~~~~~d~~Lt~~G~~qa~~~ 59 (195)
.=|+|+||.-.+-.. -..|++..+++|++.
T Consensus 20 ~gy~vpHgdH~HyI~----------k~dLs~~E~~aA~~~ 49 (53)
T PF04270_consen 20 DGYVVPHGDHFHYIP----------KSDLSASELKAAQAY 49 (53)
T ss_dssp SEEEEEETTEEEEEE----------GGGS-HHHHHHHHHH
T ss_pred CeEEeeCCCcccCCc----------hhhCCHHHHHHHHHH
Confidence 468999985433221 256999888888764
No 62
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=38.59 E-value=63 Score=25.05 Aligned_cols=26 Identities=19% Similarity=0.533 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChh
Q 046442 152 FDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGL 188 (195)
Q Consensus 152 ~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~ 188 (195)
...+.+.+.+++++ ...+||+|||.-
T Consensus 166 R~~lq~~l~~lw~~-----------~~~TvllVTHdi 191 (248)
T COG1116 166 REELQDELLRLWEE-----------TRKTVLLVTHDV 191 (248)
T ss_pred HHHHHHHHHHHHHh-----------hCCEEEEEeCCH
Confidence 45556667777664 478999999963
No 63
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=38.53 E-value=75 Score=21.03 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEe
Q 046442 143 PEGESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVS 185 (195)
Q Consensus 143 ~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVs 185 (195)
+.+++..++..++.+.++++ ..++.|+|++
T Consensus 35 ~~~~~~~~~~~~l~~~i~~~-------------~~~~~vlil~ 64 (116)
T PF03610_consen 35 YPDESIEDFEEKLEEAIEEL-------------DEGDGVLILT 64 (116)
T ss_dssp TTTSCHHHHHHHHHHHHHHC-------------CTTSEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHhc-------------cCCCcEEEEe
Confidence 45689999999999999765 4466777765
No 64
>PF13479 AAA_24: AAA domain
Probab=38.51 E-value=73 Score=23.74 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChh
Q 046442 145 GESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGL 188 (195)
Q Consensus 145 ~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~ 188 (195)
+-.|..+..++.+++..++.. .+.+||+++|..
T Consensus 105 ~~~yg~~~~~~~~~i~~l~~~-----------~~~~VI~tah~~ 137 (213)
T PF13479_consen 105 GKGYGELQQEFMRFIDKLLNA-----------LGKNVIFTAHAK 137 (213)
T ss_pred cchHHHHHHHHHHHHHHHHHH-----------CCCcEEEEEEEE
Confidence 566778888888888887652 589999999964
No 65
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=37.81 E-value=73 Score=24.35 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhhh
Q 046442 152 FDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSRV 192 (195)
Q Consensus 152 ~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~~ 192 (195)
...+...+.++.+ ..+.+||+|||...+..
T Consensus 178 ~~~V~~ll~~~~~-----------~~g~tii~VTHd~~lA~ 207 (226)
T COG1136 178 AKEVLELLRELNK-----------ERGKTIIMVTHDPELAK 207 (226)
T ss_pred HHHHHHHHHHHHH-----------hcCCEEEEEcCCHHHHH
Confidence 4556666666644 24789999999877643
No 66
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=36.99 E-value=82 Score=21.17 Aligned_cols=28 Identities=18% Similarity=0.482 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeCh
Q 046442 150 DVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHG 187 (195)
Q Consensus 150 ~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg 187 (195)
....++.+.++++.++ .+...|+|++|+
T Consensus 45 ~~~~~~~~~l~~~~~~----------~~~~~i~itGHS 72 (140)
T PF01764_consen 45 SLYDQILDALKELVEK----------YPDYSIVITGHS 72 (140)
T ss_dssp HHHHHHHHHHHHHHHH----------STTSEEEEEEET
T ss_pred HHHHHHHHHHHHHHhc----------ccCccchhhccc
Confidence 4455666666666554 346899999995
No 67
>PF02604 PhdYeFM_antitox: Antitoxin Phd_YefM, type II toxin-antitoxin system; InterPro: IPR006442 This entry is represented by Bacteriophage P1, prevent-host-death protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins is characterised by a region of about 55 amino acids toward the N-terminal end of bacterial proteins which are themselves only 85 amino acids, or thereabouts, in length. The best-characterised member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (IPR006440 from INTERPRO) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family. ; PDB: 3DBO_A 2ODK_B 3G5O_D 2A6Q_B 3D55_C 3OEI_E 3CTO_C 3K33_D 3KH2_F 3HS2_C ....
Probab=36.00 E-value=31 Score=20.75 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhh
Q 046442 147 SAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTS 190 (195)
Q Consensus 147 s~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i 190 (195)
|..++..++.++++.+.. .+..|+|.-||...
T Consensus 5 s~~e~r~~~~~~l~~v~~------------~~~pv~It~~g~~~ 36 (75)
T PF02604_consen 5 SITEFRNNFSELLDEVEE------------GEEPVIITKNGKPV 36 (75)
T ss_dssp EHHHHHHTHHHHHHHHHH------------CT-EEEEEETTEEE
T ss_pred cHHHHHHHHHHHHHHHHc------------CCCeEEEEECCCCC
Confidence 467888899999998854 24458888887653
No 68
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=34.29 E-value=41 Score=25.76 Aligned_cols=43 Identities=21% Similarity=0.140 Sum_probs=29.4
Q ss_pred CCCChhHHHHHHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHH
Q 046442 46 IPLTPDGIHQGRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGR 95 (195)
Q Consensus 46 ~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~ 95 (195)
.|+...+..--+++...|....-- --.||+|| ||+|++.....
T Consensus 33 IP~l~f~f~~l~~lr~kL~~p~kY-----~giIfTSp--R~VEa~~eaL~ 75 (260)
T KOG4132|consen 33 IPVLSFTFVNLQQLRAKLNNPPKY-----AGIIFTSP--RCVEALNEALI 75 (260)
T ss_pred ecceeeeeccHHHHHHHhcCchhh-----ceeEEeCh--HHHHHHHHHhc
Confidence 466666776667777777643321 11899997 99999887654
No 69
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=33.69 E-value=52 Score=25.26 Aligned_cols=13 Identities=23% Similarity=0.698 Sum_probs=10.3
Q ss_pred CCCeEEEEeChhh
Q 046442 177 QELNLIIVSHGLT 189 (195)
Q Consensus 177 ~~~~ilvVsHg~~ 189 (195)
+.-+|+||||..-
T Consensus 197 ~~yTIviVTHnmq 209 (253)
T COG1117 197 KKYTIVIVTHNMQ 209 (253)
T ss_pred hccEEEEEeCCHH
Confidence 4679999999753
No 70
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=32.50 E-value=94 Score=21.02 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhh
Q 046442 145 GESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSR 191 (195)
Q Consensus 145 ~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~ 191 (195)
.+...+....+.++++.... .++.|+|-+++|.-|
T Consensus 57 ~~~~~~~~~~~~~~i~~~~~------------~~~~VlVHC~~G~~R 91 (138)
T smart00195 57 ETKISPYFPEAVEFIEDAEK------------KGGKVLVHCQAGVSR 91 (138)
T ss_pred CCChHHHHHHHHHHHHHHhc------------CCCeEEEECCCCCch
Confidence 45666777888888888753 478899999988644
No 71
>COG4118 Phd Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
Probab=32.13 E-value=87 Score=19.83 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhh
Q 046442 147 SAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTS 190 (195)
Q Consensus 147 s~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i 190 (195)
+..+...++.+.|+.+ ..++.|+|.-||-++
T Consensus 6 ~i~e~k~~~S~lL~rV-------------~aGEev~IT~~G~PV 36 (84)
T COG4118 6 NIRELRTHLSELLRRV-------------RAGEEVIITKRGRPV 36 (84)
T ss_pred cHHHHHHHHHHHHHHH-------------hCCCEEEEeeCCeEE
Confidence 4567777777777776 468889999898765
No 72
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=31.88 E-value=2.2e+02 Score=21.22 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=41.9
Q ss_pred CCCCChhHHHH----HHHHHHHHHhhhhCCCCCceeEEEEcCcHHHHHHHHHHHHhcCCCccccccccCCcccccccccc
Q 046442 45 KIPLTPDGIHQ----GRSCGARLRSLLSGSANDYRVYFYVSPYERTRSTLREIGRSFSRKRIIGVREECRIREQDFGNFQ 120 (195)
Q Consensus 45 d~~Lt~~G~~q----a~~~~~~l~~~~~~~~~~~~~~i~sSp~~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~E~~~g~~~ 120 (195)
|-.-|..++.+ ...+++.|...+. ..+.-+.||+...+|-|..+...- .-+.+.++.-|.++.--+..
T Consensus 69 dLgFs~edR~eniRRvaevAkll~daG~-----iviva~ISP~r~~R~~aR~~~~~~---~FiEVyV~~pl~vce~RDpK 140 (197)
T COG0529 69 DLGFSREDRIENIRRVAEVAKLLADAGL-----IVIVAFISPYREDRQMARELLGEG---EFIEVYVDTPLEVCERRDPK 140 (197)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHCCe-----EEEEEeeCccHHHHHHHHHHhCcC---ceEEEEeCCCHHHHHhcCch
Confidence 45556666543 3445566666554 223667899999999998876532 23566676666665433333
Q ss_pred c
Q 046442 121 V 121 (195)
Q Consensus 121 g 121 (195)
|
T Consensus 141 G 141 (197)
T COG0529 141 G 141 (197)
T ss_pred H
Confidence 3
No 73
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=31.80 E-value=79 Score=24.65 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=9.9
Q ss_pred CCCeEEEEeChhh
Q 046442 177 QELNLIIVSHGLT 189 (195)
Q Consensus 177 ~~~~ilvVsHg~~ 189 (195)
.+..|+||+||+.
T Consensus 46 ~g~~vvlV~Sga~ 58 (266)
T PRK12314 46 KGKEVILVSSGAI 58 (266)
T ss_pred CCCeEEEEeeCcc
Confidence 4667999999854
No 74
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=30.93 E-value=2.3e+02 Score=21.29 Aligned_cols=125 Identities=10% Similarity=0.085 Sum_probs=66.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhhhCC-----------CCCceeEEEEcCcHHHHHHHHHHHHhcCCCccccccccCCcc
Q 046442 44 NKIPLTPDGIHQGRSCGARLRSLLSGS-----------ANDYRVYFYVSPYERTRSTLREIGRSFSRKRIIGVREECRIR 112 (195)
Q Consensus 44 ~d~~Lt~~G~~qa~~~~~~l~~~~~~~-----------~~~~~~~i~sSp~~Ra~qTA~~i~~~~~~~~~~~~~~~~~L~ 112 (195)
.|-.|-..-++|.+.+..+|......+ -.+.|+.|.--+-.-|++.|+.+....+.. +.-.
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~--------ek~~ 147 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA--------EKAD 147 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch--------hhhh
Confidence 366777888889988887776433221 112233566666777888888887765521 0000
Q ss_pred ccccccccc-cc-hhHhHHHHHHhhcCcccCCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhh
Q 046442 113 EQDFGNFQV-SE-RMKVIKETREKFGRFYYRFPEGESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLT 189 (195)
Q Consensus 113 E~~~g~~~g-~~-~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~ 189 (195)
..-..+.| .. ...+...+.-.-.--.|.-|..-=-.++.--+.+.+.++.+ .+.+.++|||-.-
T Consensus 148 -~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe------------EgrTMv~VTHEM~ 213 (256)
T COG4598 148 -AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE------------EGRTMVVVTHEMG 213 (256)
T ss_pred -cCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH------------hCCeEEEEeeehh
Confidence 00111222 11 11112221111111123333333334666777888888865 4899999999753
No 75
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=30.53 E-value=95 Score=22.40 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChh
Q 046442 152 FDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGL 188 (195)
Q Consensus 152 ~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~ 188 (195)
..++.+.+.++.+ .+..|++|||.-
T Consensus 163 ~~~~~~~l~~~~~------------~~~tili~sH~~ 187 (190)
T TIGR01166 163 REQMLAILRRLRA------------EGMTVVISTHDV 187 (190)
T ss_pred HHHHHHHHHHHHH------------cCCEEEEEeecc
Confidence 4555555655532 367999999963
No 76
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=28.77 E-value=1.5e+02 Score=19.77 Aligned_cols=20 Identities=35% Similarity=0.703 Sum_probs=16.0
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 046442 143 PEGESAADVFDRVSNFLESL 162 (195)
Q Consensus 143 ~~~Es~~~~~~R~~~~l~~l 162 (195)
+.+.+..++.+++.+.++.+
T Consensus 35 ~~~~~~~~~~~~i~~~i~~~ 54 (122)
T cd00006 35 PPGESPDDLLEKIKAALAEL 54 (122)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 34578889999999888876
No 77
>COG1416 Uncharacterized conserved protein [Function unknown]
Probab=28.65 E-value=1.4e+02 Score=20.04 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=15.6
Q ss_pred CCCCeEEEEeChhhhhhhh
Q 046442 176 SQELNLIIVSHGLTSRVFL 194 (195)
Q Consensus 176 ~~~~~ilvVsHg~~i~~ll 194 (195)
.+...|.||.||.-|..|.
T Consensus 30 ~p~~~IeVV~~g~ai~~l~ 48 (112)
T COG1416 30 DPSVEIEVVAHGPAIAFLS 48 (112)
T ss_pred CCCceEEEEEeCchhHHhh
Confidence 3677899999999998764
No 78
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=27.69 E-value=33 Score=26.83 Aligned_cols=35 Identities=14% Similarity=0.403 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhh
Q 046442 146 ESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLT 189 (195)
Q Consensus 146 Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~ 189 (195)
++..+-..++.+++...+.. ...++.+|+++||..
T Consensus 118 ~~~~~D~~~va~aL~~~~~~---------~~~~~a~vlmGHGt~ 152 (262)
T PF06180_consen 118 ENSPEDYEAVAEALAEEFPK---------KRKDEAVVLMGHGTP 152 (262)
T ss_dssp --SHHHHHHHHHHHHCCS-T---------T-TTEEEEEEE---S
T ss_pred cCChHHHHHHHHHHHHhccc---------cCCCCEEEEEeCCCC
Confidence 33444456666666654321 136889999999974
No 79
>PF14987 NADHdh_A3: NADH dehydrogenase 1 alpha subcomplex subunit 3
Probab=26.95 E-value=69 Score=20.04 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeCh
Q 046442 152 FDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHG 187 (195)
Q Consensus 152 ~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg 187 (195)
..|+..|++..+. .+.|||||-.
T Consensus 2 A~r~~afLKnAWa-------------KEPVlvvSf~ 24 (84)
T PF14987_consen 2 AARLGAFLKNAWA-------------KEPVLVVSFV 24 (84)
T ss_pred chHHHHHHHHhhh-------------cCCeEEeeeh
Confidence 4689999998875 4567777643
No 80
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=26.65 E-value=1.3e+02 Score=21.79 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=10.9
Q ss_pred CCCeEEEEeChhhh
Q 046442 177 QELNLIIVSHGLTS 190 (195)
Q Consensus 177 ~~~~ilvVsHg~~i 190 (195)
.+..|++|||-.-.
T Consensus 138 ~g~tvIivSH~~~~ 151 (176)
T cd03238 138 LGNTVILIEHNLDV 151 (176)
T ss_pred CCCEEEEEeCCHHH
Confidence 47899999998643
No 81
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=26.51 E-value=95 Score=23.77 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhh
Q 046442 145 GESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSR 191 (195)
Q Consensus 145 ~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~ 191 (195)
+-|..++..=++.+.+.... --+.+++++||++|.
T Consensus 197 ~~Sl~~~vel~~~~~~aar~------------v~kd~i~l~~GGPi~ 231 (276)
T COG5564 197 ALSLADCVELIELAAEAARG------------VRKDVIPLCHGGPIS 231 (276)
T ss_pred ccCHHHHHHHHHHHHHHHhh------------hhhceeeeccCCCcC
Confidence 45777777666666555432 256899999999985
No 82
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=26.31 E-value=1.3e+02 Score=21.75 Aligned_cols=37 Identities=14% Similarity=0.318 Sum_probs=25.0
Q ss_pred CCCC-CCHHHHH--HHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhh
Q 046442 142 FPEG-ESAADVF--DRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTS 190 (195)
Q Consensus 142 ~~~~-Es~~~~~--~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i 190 (195)
.||| ..-.... .++.++++++.+ .++.|.-||||..+
T Consensus 72 ipGG~~~~~~~~~~~~~~~~v~~~~~------------~~k~vaaIC~g~~~ 111 (188)
T COG0693 72 IPGGDHGPEYLRPDPDLLAFVRDFYA------------NGKPVAAICHGPAV 111 (188)
T ss_pred ECCCccchhhccCcHHHHHHHHHHHH------------cCCEEEEEChhHHH
Confidence 3555 4333333 567777777754 48999999999865
No 83
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=24.89 E-value=1.5e+02 Score=21.82 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=9.9
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..|++|||.--
T Consensus 191 ~~tii~~sH~~~ 202 (218)
T cd03255 191 GTTIVVVTHDPE 202 (218)
T ss_pred CCeEEEEECCHH
Confidence 678999999764
No 84
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.78 E-value=1.6e+02 Score=21.84 Aligned_cols=13 Identities=15% Similarity=0.483 Sum_probs=10.3
Q ss_pred CCCeEEEEeChhh
Q 046442 177 QELNLIIVSHGLT 189 (195)
Q Consensus 177 ~~~~ilvVsHg~~ 189 (195)
.+..|+++||-.-
T Consensus 181 ~~~tiii~sH~~~ 193 (220)
T cd03293 181 TGKTVLLVTHDID 193 (220)
T ss_pred cCCEEEEEecCHH
Confidence 3678999999864
No 85
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.58 E-value=1.3e+02 Score=22.87 Aligned_cols=26 Identities=15% Similarity=0.622 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChh
Q 046442 152 FDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGL 188 (195)
Q Consensus 152 ~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~ 188 (195)
.+|++..+-+++++ .++-+++|||+-
T Consensus 168 Re~mQelLldlw~~-----------tgk~~lliTH~i 193 (259)
T COG4525 168 REQMQELLLDLWQE-----------TGKQVLLITHDI 193 (259)
T ss_pred HHHHHHHHHHHHHH-----------hCCeEEEEeccH
Confidence 56777778888764 688999999974
No 86
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=24.54 E-value=86 Score=21.68 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=25.5
Q ss_pred CCCCCC-HHHHH---HHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhh
Q 046442 142 FPEGES-AADVF---DRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTS 190 (195)
Q Consensus 142 ~~~~Es-~~~~~---~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i 190 (195)
.|||.. ...+. .++..+++++.+ .++.|.-+|||..+
T Consensus 43 lpGG~~~~~~l~~~~~~l~~~~~~~~~------------~~k~iaaIC~g~~~ 83 (147)
T PF01965_consen 43 LPGGHGGADDLRTDSKDLLELLKEFYE------------AGKPIAAICHGPAV 83 (147)
T ss_dssp EE-BTHHHHHHTTCHHHHHHHHHHHHH------------TT-EEEEETTCHHH
T ss_pred ECCCCchhhhHhhHHHHHHHHHHHHHH------------cCCeEEecCCCcch
Confidence 456655 55555 678888888764 48899999999854
No 87
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=24.33 E-value=78 Score=21.19 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhhh
Q 046442 145 GESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSRV 192 (195)
Q Consensus 145 ~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~~ 192 (195)
.+...+...++..+++.... .+++|+|-+++|.-|+
T Consensus 52 ~~~~~~~~~~~~~~i~~~~~------------~~~~VlVHC~~G~~RS 87 (133)
T PF00782_consen 52 EEPILEHLDQAVEFIENAIS------------EGGKVLVHCKAGLSRS 87 (133)
T ss_dssp TSHGGGGHHHHHHHHHHHHH------------TTSEEEEEESSSSSHH
T ss_pred CcchHHHHHHHHHhhhhhhc------------ccceeEEEeCCCcccc
Confidence 44555556777788887653 4789999999887554
No 88
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=24.28 E-value=1.4e+02 Score=21.90 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=9.9
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..|++|||.--
T Consensus 187 ~~tii~~tH~~~ 198 (214)
T TIGR02673 187 GTTVIVATHDLS 198 (214)
T ss_pred CCEEEEEeCCHH
Confidence 679999999753
No 89
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=24.22 E-value=1.5e+02 Score=20.83 Aligned_cols=12 Identities=33% Similarity=0.606 Sum_probs=9.9
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..|+++||-.-
T Consensus 132 ~~tiii~sh~~~ 143 (163)
T cd03216 132 GVAVIFISHRLD 143 (163)
T ss_pred CCEEEEEeCCHH
Confidence 678999999854
No 90
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=23.79 E-value=2.1e+02 Score=21.86 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhh
Q 046442 152 FDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTS 190 (195)
Q Consensus 152 ~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i 190 (195)
...+.+.+.++.. ..+..|++|||.--.
T Consensus 151 ~~~l~~~l~~~~~-----------~~~~tiiivsHd~~~ 178 (246)
T cd03237 151 RLMASKVIRRFAE-----------NNEKTAFVVEHDIIM 178 (246)
T ss_pred HHHHHHHHHHHHH-----------hcCCEEEEEeCCHHH
Confidence 3455555665543 236899999998543
No 91
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=23.62 E-value=1.5e+02 Score=21.82 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=10.3
Q ss_pred CCCeEEEEeChhh
Q 046442 177 QELNLIIVSHGLT 189 (195)
Q Consensus 177 ~~~~ilvVsHg~~ 189 (195)
.+..|+++||.--
T Consensus 181 ~~~tvi~~sH~~~ 193 (213)
T cd03235 181 EGMTILVVTHDLG 193 (213)
T ss_pred cCCEEEEEeCCHH
Confidence 3678999999854
No 92
>PRK04946 hypothetical protein; Provisional
Probab=23.50 E-value=2.6e+02 Score=20.57 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeCh
Q 046442 144 EGESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHG 187 (195)
Q Consensus 144 ~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg 187 (195)
.|-+.++....+..||..... .+-..|.|-||
T Consensus 101 hG~~~eeA~~~L~~fl~~a~~------------~g~r~v~IIHG 132 (181)
T PRK04946 101 HGLTQLQAKQELGALIAACRK------------EHVFCACVMHG 132 (181)
T ss_pred CCCCHHHHHHHHHHHHHHHHH------------cCCCEEEEEcC
Confidence 478999999999999998754 35667777888
No 93
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.36 E-value=1.9e+02 Score=21.61 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhhhhh
Q 046442 143 PEGESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTSRVF 193 (195)
Q Consensus 143 ~~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i~~l 193 (195)
|.|-=--.+++|....+..+..+ -+-.++||||.-.+.-+
T Consensus 178 PTGGLDVSVQARLLDllrgLv~~-----------l~la~viVTHDl~VarL 217 (258)
T COG4107 178 PTGGLDVSVQARLLDLLRGLVRE-----------LGLAVVIVTHDLAVARL 217 (258)
T ss_pred CCCCcchhhHHHHHHHHHHHHHh-----------cCceEEEEechhHHHHH
Confidence 33333445789999999999874 36689999998665443
No 94
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=23.28 E-value=1.3e+02 Score=24.03 Aligned_cols=28 Identities=11% Similarity=0.336 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhh
Q 046442 151 VFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLT 189 (195)
Q Consensus 151 ~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~ 189 (195)
.+.|+..|+++..++ .+.+|++-||-.-
T Consensus 191 aq~~ir~Flke~n~~-----------~~aTVllTTH~~~ 218 (325)
T COG4586 191 AQANIREFLKEYNEE-----------RQATVLLTTHIFD 218 (325)
T ss_pred HHHHHHHHHHHHHHh-----------hCceEEEEecchh
Confidence 468899999999774 4789999999643
No 95
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=23.02 E-value=1.6e+02 Score=21.53 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=10.2
Q ss_pred CCCeEEEEeChhh
Q 046442 177 QELNLIIVSHGLT 189 (195)
Q Consensus 177 ~~~~ilvVsHg~~ 189 (195)
.+..|++|||---
T Consensus 175 ~~~tii~~sH~~~ 187 (205)
T cd03226 175 QGKAVIVITHDYE 187 (205)
T ss_pred CCCEEEEEeCCHH
Confidence 3678999999754
No 96
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=22.95 E-value=1.5e+02 Score=21.71 Aligned_cols=12 Identities=8% Similarity=0.343 Sum_probs=9.8
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..|++|||..-
T Consensus 186 ~~tiiivtH~~~ 197 (214)
T cd03292 186 GTTVVVATHAKE 197 (214)
T ss_pred CCEEEEEeCCHH
Confidence 678999999753
No 97
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.87 E-value=1.9e+02 Score=20.65 Aligned_cols=12 Identities=25% Similarity=0.700 Sum_probs=9.8
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..|++|||..-
T Consensus 151 ~~tiii~sH~~~ 162 (178)
T cd03229 151 GITVVLVTHDLD 162 (178)
T ss_pred CCEEEEEeCCHH
Confidence 579999999754
No 98
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.84 E-value=1.7e+02 Score=21.95 Aligned_cols=12 Identities=42% Similarity=0.642 Sum_probs=9.9
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..||+|||.--
T Consensus 187 ~~tvi~vsH~~~ 198 (235)
T cd03261 187 GLTSIMVTHDLD 198 (235)
T ss_pred CcEEEEEecCHH
Confidence 678999999764
No 99
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=22.73 E-value=1.7e+02 Score=21.96 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=9.7
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..|++|||.--
T Consensus 196 ~~tiii~tH~~~ 207 (243)
T TIGR02315 196 GITVIINLHQVD 207 (243)
T ss_pred CCEEEEEeCCHH
Confidence 578999999754
No 100
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.71 E-value=1.8e+02 Score=21.89 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=9.7
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..||+|||.--
T Consensus 187 ~~tvii~sH~~~ 198 (239)
T cd03296 187 HVTTVFVTHDQE 198 (239)
T ss_pred CCEEEEEeCCHH
Confidence 678999999754
No 101
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=22.59 E-value=1.6e+02 Score=21.69 Aligned_cols=12 Identities=8% Similarity=0.476 Sum_probs=9.8
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..|++|||.--
T Consensus 188 ~~tii~vsH~~~ 199 (216)
T TIGR00960 188 GTTVLVATHDIN 199 (216)
T ss_pred CCEEEEEeCCHH
Confidence 678999999753
No 102
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.57 E-value=1.8e+02 Score=21.30 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhh
Q 046442 152 FDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLT 189 (195)
Q Consensus 152 ~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~ 189 (195)
..++.+.+.++.. ..+..|+++||-.-
T Consensus 166 ~~~l~~~l~~~~~-----------~~~~tii~~sH~~~ 192 (213)
T cd03259 166 REELREELKELQR-----------ELGITTIYVTHDQE 192 (213)
T ss_pred HHHHHHHHHHHHH-----------HcCCEEEEEecCHH
Confidence 4555555655532 13678999999753
No 103
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=22.57 E-value=1.6e+02 Score=21.55 Aligned_cols=12 Identities=42% Similarity=0.650 Sum_probs=9.7
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..||++||---
T Consensus 184 ~~tvi~~sH~~~ 195 (211)
T cd03225 184 GKTIIIVTHDLD 195 (211)
T ss_pred CCEEEEEeCCHH
Confidence 678999999753
No 104
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=22.49 E-value=1.3e+02 Score=27.29 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=11.4
Q ss_pred CCCeEEEEeChhhh
Q 046442 177 QELNLIIVSHGLTS 190 (195)
Q Consensus 177 ~~~~ilvVsHg~~i 190 (195)
.+..|+||+||+.-
T Consensus 44 ~g~~vilVsSGA~a 57 (715)
T TIGR01092 44 DGREVILVTSGAVA 57 (715)
T ss_pred CCCEEEEEccchHH
Confidence 47889999998764
No 105
>PTZ00489 glutamate 5-kinase; Provisional
Probab=22.29 E-value=1.4e+02 Score=23.30 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=10.0
Q ss_pred CCeEEEEeChhhh
Q 046442 178 ELNLIIVSHGLTS 190 (195)
Q Consensus 178 ~~~ilvVsHg~~i 190 (195)
+..|+|||||++-
T Consensus 44 ~~~vilVssGava 56 (264)
T PTZ00489 44 KYEVILVTSGAVA 56 (264)
T ss_pred CCeEEEEecChHh
Confidence 4569999999864
No 106
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=22.09 E-value=1.6e+02 Score=22.06 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=9.7
Q ss_pred CCCeEEEEeChh
Q 046442 177 QELNLIIVSHGL 188 (195)
Q Consensus 177 ~~~~ilvVsHg~ 188 (195)
.+..|+++||..
T Consensus 186 ~~~tiii~sH~~ 197 (237)
T PRK11614 186 QGMTIFLVEQNA 197 (237)
T ss_pred CCCEEEEEeCcH
Confidence 367899999974
No 107
>PF07425 Pardaxin: Pardaxin; InterPro: IPR009990 This family consists of several Pardaxin proteins. Pardaxin, a 33-amino-acid pore-forming polypeptide toxin isolated from the Red Sea Moses sole Pardachirus marmoratus, has a helix-hinge-helix structure. This is a common structural motif found both in antibacterial peptides that can act selectively on bacterial membranes (e.g., cecropin), and in cytotoxic peptides that can lyse both mammalian and bacterial cells (e.g., melittin). Pardaxin possesses a high antibacterial activity with a significantly reduced haemolytic activity towards human red blood cells compared with melittin []. Pardaxin has also been found to have a shark repellent action [].; GO: 0005576 extracellular region; PDB: 1XC0_A 2KNS_A.
Probab=22.03 E-value=24 Score=17.24 Aligned_cols=17 Identities=18% Similarity=-0.003 Sum_probs=13.6
Q ss_pred EEEEcCcHHHHHHHHHH
Q 046442 77 YFYVSPYERTRSTLREI 93 (195)
Q Consensus 77 ~i~sSp~~Ra~qTA~~i 93 (195)
.|++||+-.++-+|-.-
T Consensus 8 kiissplfktllsavgs 24 (33)
T PF07425_consen 8 KIISSPLFKTLLSAVGS 24 (33)
T ss_dssp HHCCTTTCHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHH
Confidence 68999999998877543
No 108
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=21.96 E-value=1.7e+02 Score=21.29 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=10.6
Q ss_pred CCeEEEEeChhhh
Q 046442 178 ELNLIIVSHGLTS 190 (195)
Q Consensus 178 ~~~ilvVsHg~~i 190 (195)
+..|+++||-.-+
T Consensus 184 ~~tii~~sh~~~~ 196 (206)
T TIGR03608 184 GKTIIIVTHDPEV 196 (206)
T ss_pred CCEEEEEeCCHHH
Confidence 6799999998654
No 109
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=21.87 E-value=1.4e+02 Score=23.32 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=10.0
Q ss_pred CCCeEEEEeChh
Q 046442 177 QELNLIIVSHGL 188 (195)
Q Consensus 177 ~~~~ilvVsHg~ 188 (195)
.+..||+|||.-
T Consensus 188 eg~tIl~vtHDL 199 (254)
T COG1121 188 EGKTVLMVTHDL 199 (254)
T ss_pred CCCEEEEEeCCc
Confidence 388999999963
No 110
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=21.84 E-value=2.1e+02 Score=20.69 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=10.1
Q ss_pred CCeEEEEeChhhh
Q 046442 178 ELNLIIVSHGLTS 190 (195)
Q Consensus 178 ~~~ilvVsHg~~i 190 (195)
+..|++|||-.-.
T Consensus 122 ~~tiiivsH~~~~ 134 (177)
T cd03222 122 KKTALVVEHDLAV 134 (177)
T ss_pred CCEEEEEECCHHH
Confidence 3789999998643
No 111
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.79 E-value=1.9e+02 Score=26.81 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeCh
Q 046442 144 EGESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHG 187 (195)
Q Consensus 144 ~~Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg 187 (195)
+|++..+..+=|.++++.++..+...+-- .....+.|++|+|.
T Consensus 148 ~G~~l~dQtEYV~dAIk~ILslYr~~~e~-~~p~P~sVILVGHS 190 (973)
T KOG3724|consen 148 HGHILLDQTEYVNDAIKYILSLYRGEREY-ASPLPHSVILVGHS 190 (973)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHhhccccc-CCCCCceEEEEecc
Confidence 58899998899999999888776441111 13457789999995
No 112
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=21.74 E-value=2.2e+02 Score=24.15 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChh
Q 046442 148 AADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGL 188 (195)
Q Consensus 148 ~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~ 188 (195)
..+...++++.++++.+. ...+.|.||+|+.
T Consensus 141 ~~~~~~~Lk~lIe~~~~~----------~g~~kV~LVGHSM 171 (440)
T PLN02733 141 LPETMDGLKKKLETVYKA----------SGGKKVNIISHSM 171 (440)
T ss_pred HHHHHHHHHHHHHHHHHH----------cCCCCEEEEEECH
Confidence 455667777777777653 3567899999963
No 113
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.63 E-value=1.9e+02 Score=21.61 Aligned_cols=12 Identities=17% Similarity=0.692 Sum_probs=9.7
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..|+++||.--
T Consensus 191 ~~tvii~sH~~~ 202 (233)
T cd03258 191 GLTIVLITHEME 202 (233)
T ss_pred CCEEEEEeCCHH
Confidence 678999999753
No 114
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.56 E-value=1.9e+02 Score=21.62 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=9.8
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..|++|||.--
T Consensus 195 ~~tii~~tH~~~ 206 (241)
T cd03256 195 GITVIVSLHQVD 206 (241)
T ss_pred CCEEEEEeCCHH
Confidence 678999999754
No 115
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=21.48 E-value=1.8e+02 Score=21.16 Aligned_cols=12 Identities=8% Similarity=0.097 Sum_probs=9.6
Q ss_pred CCCeEEEEeChh
Q 046442 177 QELNLIIVSHGL 188 (195)
Q Consensus 177 ~~~~ilvVsHg~ 188 (195)
.+..|+++||-.
T Consensus 176 ~~~tii~~sH~~ 187 (198)
T TIGR01189 176 RGGIVLLTTHQD 187 (198)
T ss_pred CCCEEEEEEccc
Confidence 367899999964
No 116
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.43 E-value=1.7e+02 Score=20.79 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=9.8
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..|+++||..-
T Consensus 145 g~tiii~th~~~ 156 (173)
T cd03230 145 GKTILLSSHILE 156 (173)
T ss_pred CCEEEEECCCHH
Confidence 578999999754
No 117
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.43 E-value=1.8e+02 Score=21.17 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=10.1
Q ss_pred CCCeEEEEeChhh
Q 046442 177 QELNLIIVSHGLT 189 (195)
Q Consensus 177 ~~~~ilvVsHg~~ 189 (195)
.+..|+++||-..
T Consensus 176 ~~~tiii~sh~~~ 188 (200)
T PRK13540 176 KGGAVLLTSHQDL 188 (200)
T ss_pred cCCEEEEEeCCch
Confidence 3678999999743
No 118
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=21.42 E-value=1.9e+02 Score=21.31 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=9.8
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..|+++||..-
T Consensus 192 ~~tii~~tH~~~ 203 (221)
T TIGR02211 192 NTSFLVVTHDLE 203 (221)
T ss_pred CCEEEEEeCCHH
Confidence 678999999754
No 119
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.34 E-value=1.7e+02 Score=21.54 Aligned_cols=12 Identities=25% Similarity=0.016 Sum_probs=9.7
Q ss_pred CCCeEEEEeChh
Q 046442 177 QELNLIIVSHGL 188 (195)
Q Consensus 177 ~~~~ilvVsHg~ 188 (195)
.+..|+++||..
T Consensus 176 ~~~tiii~sH~~ 187 (207)
T PRK13539 176 QGGIVIAATHIP 187 (207)
T ss_pred CCCEEEEEeCCc
Confidence 367999999974
No 120
>PRK00035 hemH ferrochelatase; Reviewed
Probab=21.29 E-value=4.4e+02 Score=21.15 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=12.4
Q ss_pred CCCeEEEEeChhhhhh
Q 046442 177 QELNLIIVSHGLTSRV 192 (195)
Q Consensus 177 ~~~~ilvVsHg~~i~~ 192 (195)
++..+|++.||...+.
T Consensus 188 ~~~~llfs~HG~P~~~ 203 (333)
T PRK00035 188 EPDRLLFSAHGLPQRY 203 (333)
T ss_pred CCcEEEEecCCCchHH
Confidence 3578999999977654
No 121
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.27 E-value=1.7e+02 Score=21.55 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=10.3
Q ss_pred CCCeEEEEeChhh
Q 046442 177 QELNLIIVSHGLT 189 (195)
Q Consensus 177 ~~~~ilvVsHg~~ 189 (195)
.+..|+++||..-
T Consensus 186 ~~~tiii~sH~~~ 198 (214)
T PRK13543 186 GGGAALVTTHGAY 198 (214)
T ss_pred CCCEEEEEecChh
Confidence 3679999999754
No 122
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=21.20 E-value=1.5e+02 Score=22.30 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChh
Q 046442 152 FDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGL 188 (195)
Q Consensus 152 ~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~ 188 (195)
+.=|.++|+..++. .+.++-+|+++|+-
T Consensus 77 y~DV~~AF~~yL~~---------~n~GRPfILaGHSQ 104 (207)
T PF11288_consen 77 YSDVRAAFDYYLAN---------YNNGRPFILAGHSQ 104 (207)
T ss_pred HHHHHHHHHHHHHh---------cCCCCCEEEEEeCh
Confidence 34455666666654 25678999999963
No 123
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=21.13 E-value=1.8e+02 Score=21.24 Aligned_cols=12 Identities=8% Similarity=0.122 Sum_probs=9.5
Q ss_pred CCCeEEEEeChh
Q 046442 177 QELNLIIVSHGL 188 (195)
Q Consensus 177 ~~~~ilvVsHg~ 188 (195)
.+..|++|||-.
T Consensus 174 ~g~tiii~sH~~ 185 (201)
T cd03231 174 RGGMVVLTTHQD 185 (201)
T ss_pred CCCEEEEEecCc
Confidence 367899999954
No 124
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=21.06 E-value=1.9e+02 Score=21.22 Aligned_cols=26 Identities=15% Similarity=0.443 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhh
Q 046442 152 FDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLT 189 (195)
Q Consensus 152 ~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~ 189 (195)
..++.+.+.++.. .+..|+++||---
T Consensus 171 ~~~l~~~l~~~~~------------~~~tvi~~sh~~~ 196 (213)
T cd03262 171 VGEVLDVMKDLAE------------EGMTMVVVTHEMG 196 (213)
T ss_pred HHHHHHHHHHHHH------------cCCEEEEEeCCHH
Confidence 4555666666532 3678999999754
No 125
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=21.02 E-value=2e+02 Score=21.67 Aligned_cols=13 Identities=15% Similarity=0.370 Sum_probs=10.4
Q ss_pred CCCeEEEEeChhh
Q 046442 177 QELNLIIVSHGLT 189 (195)
Q Consensus 177 ~~~~ilvVsHg~~ 189 (195)
.+..|++|||..-
T Consensus 203 ~~~tiiivsH~~~ 215 (236)
T cd03267 203 RGTTVLLTSHYMK 215 (236)
T ss_pred CCCEEEEEecCHH
Confidence 3679999999864
No 126
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=21.01 E-value=2e+02 Score=22.07 Aligned_cols=13 Identities=8% Similarity=0.478 Sum_probs=10.1
Q ss_pred CCCeEEEEeChhh
Q 046442 177 QELNLIIVSHGLT 189 (195)
Q Consensus 177 ~~~~ilvVsHg~~ 189 (195)
.+..||+|||..-
T Consensus 178 ~g~tviivsH~~~ 190 (255)
T PRK11248 178 TGKQVLLITHDIE 190 (255)
T ss_pred cCCEEEEEeCCHH
Confidence 3678999999754
No 127
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=20.98 E-value=2e+02 Score=21.47 Aligned_cols=12 Identities=50% Similarity=0.872 Sum_probs=9.9
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..|+++||..-
T Consensus 180 ~~tiii~sH~~~ 191 (232)
T PRK10771 180 QLTLLMVSHSLE 191 (232)
T ss_pred CCEEEEEECCHH
Confidence 678999999765
No 128
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=20.85 E-value=2e+02 Score=21.28 Aligned_cols=12 Identities=33% Similarity=0.697 Sum_probs=9.9
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..|+++||..-
T Consensus 196 ~~tii~~sH~~~ 207 (228)
T cd03257 196 GLTLLFITHDLG 207 (228)
T ss_pred CCEEEEEeCCHH
Confidence 678999999754
No 129
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=20.75 E-value=2.1e+02 Score=23.08 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=27.8
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhhCCCCCcee---EEEEcCcHHHHHHHHHHH
Q 046442 45 KIPLTPDGIHQGRSCGARLRSLLSGSANDYRV---YFYVSPYERTRSTLREIG 94 (195)
Q Consensus 45 d~~Lt~~G~~qa~~~~~~l~~~~~~~~~~~~~---~i~sSp~~Ra~qTA~~i~ 94 (195)
-+||...-+.||+.+.+.|... . ++++ .=|..|... ++.+.+.
T Consensus 69 ~SPl~~~t~~q~~~l~~~l~~~-~----~~~V~~amry~~P~i~--~~l~~l~ 114 (322)
T TIGR00109 69 GSPLLQITEQQAHALEKRLPNE-I----DFKVYIAMRYGEPFTE--EAVKELL 114 (322)
T ss_pred CCcHHHHHHHHHHHHHHHhccC-C----CceEEEeeccCCCCHH--HHHHHHH
Confidence 4799999999999999998642 1 1111 336677765 4444443
No 130
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=20.66 E-value=2e+02 Score=20.61 Aligned_cols=16 Identities=6% Similarity=0.133 Sum_probs=13.6
Q ss_pred CCCeEEEEeChhhhhh
Q 046442 177 QELNLIIVSHGLTSRV 192 (195)
Q Consensus 177 ~~~~ilvVsHg~~i~~ 192 (195)
.++.|||++||.++-.
T Consensus 56 ~~~~vLVLGTgEfMy~ 71 (155)
T PF12500_consen 56 PGERVLVLGTGEFMYL 71 (155)
T ss_pred CCCcEEEEccchHHHH
Confidence 6789999999998754
No 131
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=20.65 E-value=51 Score=26.12 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=11.9
Q ss_pred CCCeEEEEeChhhhh
Q 046442 177 QELNLIIVSHGLTSR 191 (195)
Q Consensus 177 ~~~~ilvVsHg~~i~ 191 (195)
.+=+||+|+||.++.
T Consensus 249 ~~v~i~c~chg~~~~ 263 (284)
T PF07897_consen 249 EEVRIVCVCHGSFLS 263 (284)
T ss_pred CeEEEEEEecCCCCC
Confidence 355899999998864
No 132
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=20.62 E-value=1e+02 Score=26.79 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChh
Q 046442 146 ESAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGL 188 (195)
Q Consensus 146 Es~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~ 188 (195)
|.-+.+-.-...|++..+.. .++ .||||||.-
T Consensus 179 EPTNHLD~~~i~WLe~~L~~----------~~g-tviiVSHDR 210 (530)
T COG0488 179 EPTNHLDLESIEWLEDYLKR----------YPG-TVIVVSHDR 210 (530)
T ss_pred CCCcccCHHHHHHHHHHHHh----------CCC-cEEEEeCCH
Confidence 44444445556788888765 345 999999964
No 133
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=20.62 E-value=2.1e+02 Score=21.43 Aligned_cols=12 Identities=17% Similarity=0.628 Sum_probs=9.7
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..|+++||.--
T Consensus 165 ~~tii~~sH~~~ 176 (230)
T TIGR01184 165 RVTVLMVTHDVD 176 (230)
T ss_pred CCEEEEEeCCHH
Confidence 678999999754
No 134
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.59 E-value=1.9e+02 Score=20.89 Aligned_cols=11 Identities=9% Similarity=0.084 Sum_probs=9.4
Q ss_pred CCeEEEEeChh
Q 046442 178 ELNLIIVSHGL 188 (195)
Q Consensus 178 ~~~ilvVsHg~ 188 (195)
+..|++|||-.
T Consensus 158 ~~tiiivtH~~ 168 (192)
T cd03232 158 GQAILCTIHQP 168 (192)
T ss_pred CCEEEEEEcCC
Confidence 67999999974
No 135
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.48 E-value=2.1e+02 Score=20.98 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=9.9
Q ss_pred CCeEEEEeChhh
Q 046442 178 ELNLIIVSHGLT 189 (195)
Q Consensus 178 ~~~ilvVsHg~~ 189 (195)
+..|+++||..-
T Consensus 182 ~~tiii~sH~~~ 193 (214)
T cd03297 182 NIPVIFVTHDLS 193 (214)
T ss_pred CcEEEEEecCHH
Confidence 678999999764
No 136
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=20.45 E-value=2e+02 Score=22.12 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChhhh
Q 046442 152 FDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGLTS 190 (195)
Q Consensus 152 ~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~~i 190 (195)
...+.+.+.++.++ .+..|++|||..-.
T Consensus 186 ~~~l~~~l~~~~~~-----------~g~tiiivsH~~~~ 213 (265)
T TIGR02769 186 QAVILELLRKLQQA-----------FGTAYLFITHDLRL 213 (265)
T ss_pred HHHHHHHHHHHHHh-----------cCcEEEEEeCCHHH
Confidence 44566666665431 36789999997643
No 137
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=20.20 E-value=2.1e+02 Score=21.68 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCeEEEEeChh
Q 046442 147 SAADVFDRVSNFLESLWRDIDLNRLQHDASQELNLIIVSHGL 188 (195)
Q Consensus 147 s~~~~~~R~~~~l~~l~~~~~~~~~~~~~~~~~~ilvVsHg~ 188 (195)
.+..+..++..++..|. ..+.+|++++|..
T Consensus 114 ~yg~~~~~fl~~l~~L~------------~~g~nII~tAhe~ 143 (220)
T TIGR01618 114 HYQKLDLWFLDLLTVLK------------ESNKNIYATAWEL 143 (220)
T ss_pred cHHHHHHHHHHHHHHHH------------hCCCcEEEEEeec
Confidence 44556666666766664 2488999999974
No 138
>PF07431 DUF1512: Protein of unknown function (DUF1512); InterPro: IPR009995 This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=20.13 E-value=97 Score=25.35 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=13.6
Q ss_pred cCCCCeEEEEeChhhhh
Q 046442 175 ASQELNLIIVSHGLTSR 191 (195)
Q Consensus 175 ~~~~~~ilvVsHg~~i~ 191 (195)
..+++.|+||+=|+++.
T Consensus 336 ~~pg~tViviGVGNT~G 352 (355)
T PF07431_consen 336 TKPGDTVIVIGVGNTVG 352 (355)
T ss_pred ccCCCeEEEEeccccCC
Confidence 35689999999998753
Done!