BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046443
(1469 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R8M|E Chain E, Sec7 Domain Of The Arf Exchange Factor Arno With Brefeldin
A- Sensitizing Mutations
pdb|1S9D|E Chain E, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 167 bits (424), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/188 (47%), Positives = 118/188 (62%), Gaps = 3/188 (1%)
Query: 567 RRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDE 626
R++ +G FN DPKKG++FL LL + P+ +A F GL+K +GD+LG +E
Sbjct: 14 RKMAMGRKKFNMDPKKGIQFLVENELLQNT--PEEIARFLYKGEGLNKTAIGDYLGEREE 71
Query: 627 FCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILA 686
+ VLH F +F D+NL ALR FL +FRLPGE+QKI R++EAF++RY +P +
Sbjct: 72 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLXNPGVFQ 131
Query: 687 NKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICK 746
+ D +LSYS+IMLNTD HN V+ KM E F+ NR IN G DLP E L LY SI +
Sbjct: 132 STDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSI-R 190
Query: 747 NEIRTTPE 754
NE PE
Sbjct: 191 NEPFKIPE 198
>pdb|1R8Q|E Chain E, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|F Chain F, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
Length = 203
Score = 166 bits (421), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/188 (47%), Positives = 118/188 (62%), Gaps = 3/188 (1%)
Query: 567 RRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDE 626
R++ +G FN DPKKG++FL LL + P+ +A F GL+K +GD+LG +E
Sbjct: 14 RKMAMGRKKFNMDPKKGIQFLVENELLQNT--PEEIARFLYKGEGLNKTAIGDYLGEREE 71
Query: 627 FCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILA 686
+ VLH F +F D+NL ALR FL +FRLPGE+QKI R++EAF++RY +P +
Sbjct: 72 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 131
Query: 687 NKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICK 746
+ D +LSYS+IMLNTD HN V+ KM E F+ NR IN G DLP E L LY SI +
Sbjct: 132 STDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSI-R 190
Query: 747 NEIRTTPE 754
NE PE
Sbjct: 191 NEPFKIPE 198
>pdb|1R8S|E Chain E, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
Length = 203
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/188 (46%), Positives = 118/188 (62%), Gaps = 3/188 (1%)
Query: 567 RRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDE 626
R++ +G FN DPKKG++FL LL + P+ +A F GL+K +GD+LG +E
Sbjct: 14 RKMAMGRKKFNMDPKKGIQFLVENELLQNT--PEEIARFLYKGEGLNKTAIGDYLGEREE 71
Query: 627 FCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILA 686
+ VLH F +F D+NL ALR FL +FRLPG++QKI R++EAF++RY +P +
Sbjct: 72 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQ 131
Query: 687 NKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICK 746
+ D +LSYS+IMLNTD HN V+ KM E F+ NR IN G DLP E L LY SI +
Sbjct: 132 STDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSI-R 190
Query: 747 NEIRTTPE 754
NE PE
Sbjct: 191 NEPFKIPE 198
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 164 bits (415), Expect = 4e-40, Method: Composition-based stats.
Identities = 87/187 (46%), Positives = 113/187 (60%), Gaps = 3/187 (1%)
Query: 568 RLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEF 627
++ G FN DPKKG++FL LL + P+ VA F GL+K ++GD+LG D+F
Sbjct: 17 QIAXGRKKFNXDPKKGIQFLIENDLL--QSSPEDVAQFLYKGEGLNKTVIGDYLGERDDF 74
Query: 628 CVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILAN 687
++VL F +F D+NL ALR FL +FRLPGE+QKI R EAF+ RY +P + +
Sbjct: 75 NIKVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRXXEAFASRYCLCNPGVFQS 134
Query: 688 KDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICKN 747
D +LS+++I LNT HN V+ K T E FI NR IN G DLP E L LY SI KN
Sbjct: 135 TDTCYVLSFAIIXLNTSLHNHNVRDKPTAERFITXNRGINEGGDLPEELLRNLYESI-KN 193
Query: 748 EIRTTPE 754
E PE
Sbjct: 194 EPFKIPE 200
>pdb|1BC9|A Chain A, Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average
Structure
Length = 200
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/188 (47%), Positives = 118/188 (62%), Gaps = 3/188 (1%)
Query: 567 RRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDE 626
+++ +G FN DPKKG++FL LL + + +A F GL+K +GD+LG DE
Sbjct: 8 KQVAMGRKKFNMDPKKGIQFLIENDLLKNTC--EDIAQFLYKGEGLNKTAIGDYLGERDE 65
Query: 627 FCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILA 686
F +QVLH F +F D+NL ALR FL +FRLPGE+QKI R++EAF++RY + + +
Sbjct: 66 FNIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQ 125
Query: 687 NKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICK 746
+ D +LS+++IMLNT HN VK K T E FI NR IN G DLP E L LY SI K
Sbjct: 126 STDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESI-K 184
Query: 747 NEIRTTPE 754
NE PE
Sbjct: 185 NEPFKIPE 192
>pdb|4A4P|A Chain A, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
pdb|4A4P|B Chain B, Crystal Structure Of The Sec7 Domain From Human Cytohesin1
Length = 192
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/188 (47%), Positives = 118/188 (62%), Gaps = 3/188 (1%)
Query: 567 RRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDE 626
+++ +G FN DPKKG++FL LL + + +A F GL+K +GD+LG DE
Sbjct: 8 KQVAMGRKKFNMDPKKGIQFLIENDLLKNTC--EDIAQFLYKGEGLNKTAIGDYLGERDE 65
Query: 627 FCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILA 686
F +QVLH F +F D+NL ALR FL +FRLPGE+QKI R++EAF++RY + + +
Sbjct: 66 FNIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQ 125
Query: 687 NKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICK 746
+ D +LS+++IMLNT HN VK K T E FI NR IN G DLP E L LY SI K
Sbjct: 126 STDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESI-K 184
Query: 747 NEIRTTPE 754
NE PE
Sbjct: 185 NEPFKIPE 192
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 162 bits (411), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 88/187 (47%), Positives = 117/187 (62%), Gaps = 3/187 (1%)
Query: 568 RLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEF 627
++ +G FN DPKKG++FL LL + P+ VA F GL+K ++GD+LG D+F
Sbjct: 17 QIAMGRKKFNMDPKKGIQFLIENDLL--QSSPEDVAQFLYKGEGLNKTVIGDYLGERDDF 74
Query: 628 CVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILAN 687
++VL F +F D+NL ALR FL +FRLPGE+QKI R++EAF+ RY +P + +
Sbjct: 75 NIKVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQS 134
Query: 688 KDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICKN 747
D +LS+++IMLNT HN V+ K T E FI NR IN G DLP E L LY SI KN
Sbjct: 135 TDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITMNRGINEGGDLPEELLRNLYESI-KN 193
Query: 748 EIRTTPE 754
E PE
Sbjct: 194 EPFKIPE 200
>pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain
pdb|3LTL|B Chain B, Crystal Structure Of Human Big1 Sec7 Domain
Length = 211
Score = 162 bits (409), Expect = 2e-39, Method: Composition-based stats.
Identities = 83/189 (43%), Positives = 120/189 (63%), Gaps = 6/189 (3%)
Query: 572 GADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQV 631
G D FN+ PK+G+++LQ +L P+ +A F LD VG+FLG++D+F +V
Sbjct: 25 GIDLFNKKPKRGIQYLQEQGML--GTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEV 82
Query: 632 LHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYE--QSPQILANKD 689
++ + DF + +ALR+FLE FRLPGE+QKI R++E F+ RY E Q + A+ D
Sbjct: 83 MYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASAD 142
Query: 690 AALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICKNEI 749
A +L+YS+IML TD H+ QVK KMT+E +I+ NR IN DLP E+LS +Y+ I +I
Sbjct: 143 TAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKI 202
Query: 750 --RTTPEQG 756
+ T E G
Sbjct: 203 SMKETKETG 211
>pdb|1PBV|A Chain A, Sec7 Domain Of The Exchange Factor Arno
Length = 195
Score = 157 bits (396), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/187 (44%), Positives = 115/187 (61%), Gaps = 3/187 (1%)
Query: 567 RRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDE 626
R++ +G FN DPKKG++FL LL + P+ +A F GL+K +GD+LG +E
Sbjct: 12 RKMAMGRKKFNMDPKKGIQFLVENELLQNT--PEEIARFLYKGEGLNKTAIGDYLGEREE 69
Query: 627 FCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILA 686
+ VLH F +F D+NL ALR FL +FRLPGE+QKI R++EAF++RY +P +
Sbjct: 70 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 129
Query: 687 NKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICK 746
+ D +LS+++IMLNT HN V+ K E F+ NR IN G DLP E L LY SI +
Sbjct: 130 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSI-R 188
Query: 747 NEIRTTP 753
NE P
Sbjct: 189 NEPFKIP 195
>pdb|3L8N|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2
(Brefeldina-Inhibited Gep 2) From Homo Sapiens (Human).
Northeast Structural Genomics Consortium Target Id
Hr5562a
pdb|3SWV|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2 (Brefeldin
A-Inhibited Gep 2) From Homo Sapiens (Human), Northeast
Structural Genomics Consortium Target Id Hr5562a
Length = 202
Score = 144 bits (362), Expect = 5e-34, Method: Composition-based stats.
Identities = 76/175 (43%), Positives = 104/175 (59%), Gaps = 4/175 (2%)
Query: 572 GADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQV 631
G + FN+ PK+G++FLQ L + + +A F LD VGDFLG+ F +V
Sbjct: 16 GIELFNKKPKRGIQFLQEQGXLGTSV--EDIAQFLHQEERLDSTQVGDFLGDSARFNKEV 73
Query: 632 LHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYE--QSPQILANKD 689
+ + DF + +ALR FLE FRLPGE+QKI R+ E F+ RY E Q + A+ D
Sbjct: 74 XYAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLXEKFAARYIECNQGQTLFASAD 133
Query: 690 AALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSI 744
A +L+YS+I L TD H+ QVK K T+E +I+ NR IN DLP E+LS +Y I
Sbjct: 134 TAYVLAYSIIXLTTDLHSPQVKNKXTKEQYIKXNRGINDSKDLPEEYLSSIYEEI 188
>pdb|1XSZ|A Chain A, The Structure Of Ralf
pdb|1XSZ|B Chain B, The Structure Of Ralf
Length = 356
Score = 124 bits (311), Expect = 4e-28, Method: Composition-based stats.
Identities = 73/190 (38%), Positives = 106/190 (55%), Gaps = 16/190 (8%)
Query: 576 FNRDPKKGL----EFLQGTHLLPDKLDPQSVACFF-RYTAGLDKNLVGDFLGNHDEFCVQ 630
FN PK G+ E + + P+ + +A FF + LD VGD+L + + Q
Sbjct: 18 FNAKPKNGINKIKEICEQYKISPN----EEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQ 73
Query: 631 VLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILANKDA 690
VL F +F + LR FL+TF+LPGE+QKI R++++FS Y++Q+P +++N DA
Sbjct: 74 VLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADA 133
Query: 691 ALLLSYSLIMLNTDQHNVQV--KKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICK-- 746
A LL++ IMLNTD HN + K KMT + RN R N G D +FL ELY I
Sbjct: 134 AYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKP 193
Query: 747 ---NEIRTTP 753
N ++T+P
Sbjct: 194 FELNFVKTSP 203
>pdb|1XT0|B Chain B, The Structure Of N-Terminal Sec7 Domain Of Ralf
Length = 203
Score = 117 bits (293), Expect = 5e-26, Method: Composition-based stats.
Identities = 71/190 (37%), Positives = 104/190 (54%), Gaps = 16/190 (8%)
Query: 576 FNRDPKKGL----EFLQGTHLLPDKLDPQSVACFF-RYTAGLDKNLVGDFLGNHDEFCVQ 630
FN PK G+ E + + P+ + +A FF + LD VGD+L + + Q
Sbjct: 18 FNAKPKNGINKIKEICEQYKISPN----EEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQ 73
Query: 631 VLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILANKDA 690
VL F +F + LR FL+TF+LPGE+QKI R++++FS Y++Q+P +++N DA
Sbjct: 74 VLKAFTSQXNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADA 133
Query: 691 ALLLSYSLIMLNTDQHNVQV--KKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICK-- 746
A LL++ I LNTD HN + K K T + RN R N G D +FL ELY I
Sbjct: 134 AYLLAFQTIXLNTDLHNPSIPEKNKXTVDGLKRNLRGGNNGGDFDAKFLEELYSEIKAKP 193
Query: 747 ---NEIRTTP 753
N ++T+P
Sbjct: 194 FELNFVKTSP 203
>pdb|1RE0|B Chain B, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
Length = 221
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 106/215 (49%), Gaps = 28/215 (13%)
Query: 566 KRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHD 625
K ++ + FN KKG++ L + + + F L+K +G L D
Sbjct: 9 KTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLC--D 66
Query: 626 EFCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYY-EQSP-- 682
+L EF FDF+ + +D A+R+ L FRLPGESQ+I+R++EAFS +Y +QS
Sbjct: 67 PKKTSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDK 126
Query: 683 ----------------------QILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFI 720
+ + D+ +LSYS+IMLNTD HN QVK MT +D+
Sbjct: 127 VELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYS 186
Query: 721 RNNRHINGGNDLPREFLSELYHSICKNEIRTTPEQ 755
N R G D PR +L ++Y SI EI PE+
Sbjct: 187 NNLRGCYNGKDFPRWYLHKIYTSIKVKEI-VMPEE 220
>pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
pdb|1KU1|B Chain B, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
Length = 230
Score = 110 bits (275), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 102/198 (51%), Gaps = 18/198 (9%)
Query: 576 FNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEF 635
FN PKKG+ L + D F ++K +G L + D+ V +L+E+
Sbjct: 34 FNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPDK--VSLLNEY 91
Query: 636 AGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQ---SPQILANK---- 688
FDF + +D A+R+ L FRLPGESQ+I+R++EAFS Y E P +++
Sbjct: 92 IRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDD 151
Query: 689 --------DAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSEL 740
D+ +LSYS+IMLNTD HN QVK+ M+ ED+ N + D P +L +
Sbjct: 152 ISTVQPDADSVFILSYSIIMLNTDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRV 211
Query: 741 YHSICKNEIRTTPEQGVG 758
Y SI EI PE+ G
Sbjct: 212 YCSIRDKEI-VMPEEHHG 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,992,300
Number of Sequences: 62578
Number of extensions: 1584766
Number of successful extensions: 3633
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3595
Number of HSP's gapped (non-prelim): 23
length of query: 1469
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1358
effective length of database: 8,027,179
effective search space: 10900909082
effective search space used: 10900909082
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)