Query 046443
Match_columns 1469
No_of_seqs 364 out of 1096
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 12:11:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0928 Pattern-formation prot 100.0 4E-245 9E-250 2243.0 112.2 1364 25-1450 4-1386(1386)
2 PLN03076 ARF guanine nucleotid 100.0 5E-176 1E-180 1738.9 120.7 1277 87-1423 80-1513(1780)
3 KOG0929 Guanine nucleotide exc 100.0 2E-131 4E-136 1257.6 68.8 1218 85-1423 37-1322(1514)
4 COG5307 SEC7 domain proteins [ 100.0 7.2E-66 1.6E-70 655.2 38.3 830 353-1307 20-936 (1024)
5 KOG1848 Uncharacterized conser 100.0 1.8E-55 3.9E-60 544.9 60.0 1041 29-1426 10-1183(1610)
6 cd00171 Sec7 Sec7 domain; Doma 100.0 3.7E-49 8.1E-54 425.2 20.4 183 566-749 2-185 (185)
7 PF01369 Sec7: Sec7 domain; I 100.0 2.2E-49 4.8E-54 430.3 18.5 187 563-749 2-190 (190)
8 smart00222 Sec7 Sec7 domain. D 100.0 1.8E-48 4E-53 421.3 20.7 184 565-749 2-187 (187)
9 KOG0930 Guanine nucleotide exc 100.0 3.4E-48 7.3E-53 411.5 15.5 194 562-757 58-251 (395)
10 KOG0931 Predicted guanine nucl 100.0 4.4E-47 9.6E-52 425.4 14.0 189 565-755 197-391 (627)
11 PF12783 Sec7_N: Guanine nucle 100.0 2.5E-29 5.4E-34 269.4 17.3 164 315-481 2-168 (168)
12 KOG0932 Guanine nucleotide exc 100.0 9.5E-29 2.1E-33 284.2 13.0 152 599-750 307-458 (774)
13 KOG1846 Uncharacterized conser 99.1 2.7E-06 5.9E-11 104.1 44.2 348 989-1344 844-1284(1777)
14 PF09324 DUF1981: Domain of un 98.8 1.2E-08 2.6E-13 96.7 6.5 72 1100-1175 13-86 (86)
15 PLN03076 ARF guanine nucleotid 90.6 83 0.0018 45.8 29.0 122 1243-1388 1129-1251(1780)
16 KOG1241 Karyopherin (importin) 87.3 71 0.0015 41.6 22.1 45 1371-1422 394-438 (859)
17 PF12348 CLASP_N: CLASP N term 83.5 6.6 0.00014 44.2 10.4 105 352-462 22-126 (228)
18 PF02985 HEAT: HEAT repeat; I 81.3 2.5 5.5E-05 31.9 4.0 29 1252-1280 1-29 (31)
19 KOG2171 Karyopherin (importin) 80.9 1.6E+02 0.0034 40.3 22.3 257 93-460 159-419 (1075)
20 COG5307 SEC7 domain proteins [ 75.3 69 0.0015 44.0 17.1 52 954-1008 670-723 (1024)
21 PF11864 DUF3384: Domain of un 69.2 3.2E+02 0.0069 34.6 20.8 136 1002-1158 207-352 (464)
22 PF12348 CLASP_N: CLASP N term 59.7 2E+02 0.0044 32.1 14.9 104 107-221 19-123 (228)
23 PF10274 ParcG: Parkin co-regu 59.5 85 0.0018 34.4 10.9 86 81-177 26-111 (183)
24 PF14500 MMS19_N: Dos2-interac 56.0 3E+02 0.0064 32.1 15.4 138 1121-1285 96-241 (262)
25 PF14664 RICTOR_N: Rapamycin-i 54.0 4.4E+02 0.0095 32.4 17.1 122 372-514 11-136 (371)
26 PF09324 DUF1981: Domain of un 51.8 12 0.00026 35.7 2.7 31 875-905 37-67 (86)
27 KOG1242 Protein containing ada 40.1 9.5E+02 0.021 31.1 17.3 32 1248-1279 292-323 (569)
28 PF12719 Cnd3: Nuclear condens 34.3 86 0.0019 37.1 6.8 67 1263-1340 76-145 (298)
29 PF11640 TAN: Telomere-length 34.2 4.9E+02 0.011 27.6 11.9 106 1256-1367 9-118 (155)
30 PF12830 Nipped-B_C: Sister ch 33.4 1.6E+02 0.0034 32.4 8.2 89 92-198 7-95 (187)
31 cd00020 ARM Armadillo/beta-cat 29.3 5.2E+02 0.011 24.8 11.5 110 1252-1388 8-118 (120)
32 PF03224 V-ATPase_H_N: V-ATPas 28.8 3E+02 0.0064 32.8 10.2 128 351-489 71-201 (312)
33 KOG2023 Nuclear transport rece 26.9 1.4E+03 0.031 30.1 15.3 93 1169-1278 583-689 (885)
34 PF12765 Cohesin_HEAT: HEAT re 23.9 82 0.0018 25.8 2.9 25 1251-1275 18-42 (42)
35 KOG1240 Protein kinase contain 23.1 3.8E+02 0.0082 37.2 10.0 55 1252-1309 463-517 (1431)
36 PF14664 RICTOR_N: Rapamycin-i 23.1 6.2E+02 0.013 31.1 11.5 182 1088-1300 89-283 (371)
37 PF13513 HEAT_EZ: HEAT-like re 22.8 1.1E+02 0.0024 26.0 3.7 29 1250-1278 27-55 (55)
38 cd03565 VHS_Tom1 VHS domain fa 22.2 8.3E+02 0.018 25.6 10.8 64 397-460 51-116 (141)
39 PTZ00429 beta-adaptin; Provisi 21.8 2.1E+03 0.045 29.3 37.3 124 355-493 271-397 (746)
40 PF08167 RIX1: rRNA processing 21.5 1E+03 0.022 25.5 14.8 127 1006-1144 19-151 (165)
41 KOG2758 Translation initiation 21.1 1.1E+02 0.0024 36.1 4.2 72 372-479 237-310 (432)
42 KOG1943 Beta-tubulin folding c 20.8 1.5E+03 0.032 31.5 14.6 97 1322-1420 771-868 (1133)
43 PF12717 Cnd1: non-SMC mitotic 20.5 3.9E+02 0.0084 29.0 8.3 92 362-464 6-99 (178)
44 PF08623 TIP120: TATA-binding 20.2 9.9E+02 0.021 26.0 10.9 129 1261-1418 37-167 (169)
45 KOG2956 CLIP-associating prote 20.2 9.5E+02 0.021 30.2 11.8 77 1253-1344 289-365 (516)
No 1
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-245 Score=2243.04 Aligned_cols=1364 Identities=53% Similarity=0.833 Sum_probs=1218.2
Q ss_pred ccccchhHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCcccchHHHHHHHHHHHhhccCCCCCCCChhhhhHHHHHHhcc
Q 046443 25 SNKATLSCMINSEVGAVLAVMRRNRSVRWGGQYMSGDDQLEHSLIQSLKTLRKQIFSWQHPWHTINPAAYLQPFLDVIRS 104 (1469)
Q Consensus 25 ~~~~~~~~~v~~e~~~v~~~mr~~~~~rw~~~~~~~~~~~~~pl~~~f~~Lr~~l~~~~~~~~~~d~~~~l~PFl~vi~S 104 (1469)
++.....|+++.++.+|+++|||| .||+.|+..+.+..+|||+++|++||.+|+++.+ |+++||.+||+|||+||+|
T Consensus 4 ~~~~~~~~~in~~vg~~l~~~~~~--~~~~~~~~~~~~~~~~~ll~~f~~Lr~~ln~~~~-l~~idp~~~L~PFL~vI~s 80 (1386)
T KOG0928|consen 4 TSRYISQGMINILVGAVLAVFRRN--DRWSVRSFTNLDTSSHSLLSSFKQLREVLNSLAS-LDTIDPLTYLSPFLEVIKS 80 (1386)
T ss_pred ccchhhhhhhHHHHhHHHHHHHhc--cchhhccCCCCcccchHHHHHHHHHHHHhhchhh-hccCChHhHHhHHHHHHhc
Confidence 456677899999999999999999 9999999988888899999999999999999884 9999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHHccCCccccch
Q 046443 105 DETGAPITSIALSSVYKILSLDVIDQNSINVEEAMHLVVDAVTSCRFEVTDPASEEVVLMKILQVLLACMKSKASIVLSN 184 (1469)
Q Consensus 105 ~~t~~~iT~~AL~sl~kfl~~~~i~~~s~~~~~a~~~i~~avt~crfe~td~~~De~VllkILqvL~~~~~~~~g~~L~~ 184 (1469)
++|+||||++||+||+||++|++||++++|++.||+.+++||||||||+||+++||+|||||||||++||++|+|.+|+|
T Consensus 81 ~~~~g~iTslALssv~Kflt~~iid~~s~n~~~am~~~v~AvthcRFe~td~~Sde~VllkilqvLr~lm~sp~~~lLSn 160 (1386)
T KOG0928|consen 81 DETTGPITSLALSSVLKFLTLNIIDESSPNAADAMRNIVDAVTHCRFEGTDPASDEVVLLKILQVLRSLMDSPAGALLSN 160 (1386)
T ss_pred ccCCccHHHHHHHHHHHHheeeecCccCccHHHHHHHHHHHHHheeeeccCccchhHHHHHHHHHHHHHHhCchhhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHHHHhccCCCCCCcc-h-hhcccccccccccCCCCCCcccCCccc
Q 046443 185 QHVCTIVNTCFRIVHQAGNKGELSQRIARHTMHELVRCIFSHLPDVDNSE-H-ALVNGVTAVKQEIGGLDTDYAFGGKQL 262 (1469)
Q Consensus 185 ~~v~~~l~~c~~l~~~~~~~se~lr~tAe~tl~~~v~~iF~rl~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (1469)
+.||++||||||+|||. ++|||||++||+||++|++.||+|||++++.- . .+.+++.+ ++.+..+...+....
T Consensus 161 q~Ic~ivqTcl~v~~q~-~lselLr~~Ae~Tm~~~~~~IFsrLk~~~~~~~~~~~~~~es~----~~~~~~~~~i~~k~~ 235 (1386)
T KOG0928|consen 161 QIICDIVQTCLRVVCQS-RLSELLRKSAEHTMHDLTQLIFSRLKYIEPPYVNEMYINDESY----QGNVLKDDFIGTKRV 235 (1386)
T ss_pred hHHHHHHHHHHHHHHHH-hHHHHhhcchhhhHHHHHHHHHHhCccccccccchhhcchHhh----hcccccccccCcccC
Confidence 99999999999999997 89999999999999999999999999998521 1 12222222 222334445555555
Q ss_pred cCCCCCCCccccccccccCC-CCcccccccccccCCCCC-CC---CCcccccccCCCCCChhHHHHHHHHHHhccCCCCC
Q 046443 263 ENGNGGSEYEGQQSFANLVS-PSGVVATMMEENMNGSST-GK---DSVSYDLHLMTEPYGVPCMVEIFHFLCSLLNISEH 337 (1469)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~pyg~~~~~~lf~~L~sLi~~~~~ 337 (1469)
++|.+.++.+......+..+ ..+.++ +... +. +..+........+||+||+.++|++||+|+++.
T Consensus 236 en~e~~~~~~~a~~~~~~~~~~~~~~v--------~~~~~~~~~~~e~a~~~~~~~~~ygip~~~~~~h~l~sl~~~~-- 305 (1386)
T KOG0928|consen 236 ENGEISSEDESATFDDGSISEKFEVPV--------QQVDREQETDEENAEAMAAMDENYGIPVMKDIFHFLLSLLNVT-- 305 (1386)
T ss_pred CCCCccCcccccccccccccccccCCc--------cccccccCChhhhhhHhhcccccCCCceeccchhhhhhhcccc--
Confidence 65544332211100000000 000000 0000 00 001122345678999999999999999999972
Q ss_pred CCCCCCCCccccccchhHHHHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHhh-----cccchHHHHHHHHHHHHH
Q 046443 338 MTMGPRSNTIALDEDVPLFALRLINSAIELGGPAIRRHPRLLSLIQDELFRNLMQFG-----LSMSPLILSMVCSIVLNL 412 (1469)
Q Consensus 338 ~~~~~~~n~~~~~~~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~d~l~~~Ll~~~-----~s~~~~i~~~~lri~~~L 412 (1469)
|.+.++++.++++|.|||+|+|.+|+.|..||.|+.+|+|+++++++..+ .+..+.++++.+.++.+|
T Consensus 306 -------n~~~~~es~~~~~l~lin~aie~~g~~i~~~prll~liqd~~fk~l~~~~~~~~k~s~~~~~Lql~~s~vl~l 378 (1386)
T KOG0928|consen 306 -------NTVAHDESVRSFALVLINSAIELGGDCIREHPRLLRLIQDPLFKHLIEFLQIPTKMSLERLVLQLFCSLVLNL 378 (1386)
T ss_pred -------ccccchhhhhHHHHHHHHhhHhhcchHHHHhhHHHHHhccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999998 677788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcChhHHHHHHHhcCCCCCCCcHHHHHHHHHHhcc
Q 046443 413 YHHLRTELKLQLEAFFSCVILRLAQSRHGASYQQQEVAMEALVDFCRQKTFMVEMYANLDCDITCSNVFEDLANLLSKSA 492 (1469)
Q Consensus 413 ~~~~r~~Lk~q~E~fl~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~~p~~~~~ly~NYDCd~~~~nlfe~l~~~L~k~a 492 (1469)
+..+|.++|.|+|.||+.+..++...+.++++++|++|+|+++.|||+|.|++++|+|||||++|+||||++++.|+|++
T Consensus 379 ~~~lr~~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ale~lv~~~R~p~F~~e~yvNfDCd~~csnlfedl~k~Ltkna 458 (1386)
T KOG0928|consen 379 YLALREQLKLQLEAFFSILLLRGTAEEYGPPYEQQEVALEALVLLCRIPSFLTEMYVNFDCDLYCSNLFEDLIKLLTKNA 458 (1386)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhhhhhHHHHHHHHHHcc
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhHH--HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccCcccccccCCCCCCCCchHHHHHHHHHHHHHH
Q 046443 493 FPVNCPLSAMHI--LALDGLIAVIQGMAERIGNASVSSEQSPVTLEEYTPFWMVKCDNYSDPNHWVPFVRRRKYIKRRLM 570 (1469)
Q Consensus 493 ~~~~~~~~~~~~--laLe~ll~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~K~~~~ 570 (1469)
||+++++++++. +||++++++++.+.++..... -.+||..+++ .|+.+++++| +|++++
T Consensus 459 fP~sg~~tt~~i~~l~l~~v~~l~e~~~~~l~~~d------------~~ef~~~k~e------~~v~~iR~rk-~K~~li 519 (1386)
T KOG0928|consen 459 FPVSGPLTTASILPLDLEGVLGLAENMIDELQDSD------------REEFWTDKCE------VWVLFIRSRK-RKRELI 519 (1386)
T ss_pred CCcccccccccccchHHHHHHHHHHHHHhhccccC------------cCccccCCcc------hhhhhhccch-hhHHHH
Confidence 999999987765 666666666666555433211 1467777765 5666666665 799999
Q ss_pred HHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhhccCCChhHHhhhhcCCchhHHHHHHHHHhcCCCCCCCHHHHH
Q 046443 571 IGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQDMNLDTAL 650 (1469)
Q Consensus 571 ~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~igeyl~~~~~~~~~vl~~f~~~fdf~~~~~~~al 650 (1469)
.|+++||+||||||+||+++|+|+++.||..+|.|||+||+||||+||+|||++++ .+||++|+++|||+||++|+||
T Consensus 520 ~gae~FNe~pkKGi~fL~ek~li~~~~d~~~~~~ffr~n~rLdKk~iGdfLc~~k~--~~vLn~Fi~tFdF~gmrlDeAL 597 (1386)
T KOG0928|consen 520 LGAELFNEDPKKGIEFLQEKGLIPSDLDPTSVAEFFRYNPRLDKKTIGDFLCDPKN--VSVLNEFIGTFDFQGMRLDEAL 597 (1386)
T ss_pred HHHHHhccChhhHHHHHHhcCccCCCCChHHHHHHHHhCccccHHHHHHHhcCcch--HHHHHHHHHhcCcCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHHHhhhccccccccCCCCHHHHHHhhccCCCC
Q 046443 651 RLFLETFRLPGESQKIQRVLEAFSERYYEQSP-QILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGG 729 (1469)
Q Consensus 651 R~~l~~frlpgE~q~I~ri~e~Fa~~y~~~n~-~~~~~~d~~~~l~ysiimLntdlhn~~~k~~mt~~~F~~n~~~~n~g 729 (1469)
|.||++||||||+|+|+||+|+||++||++|+ ++|+++|+||+|||||||||||+||||||++||++||+||+||+|+|
T Consensus 598 Rl~L~sFRLPGESQ~IeRVlEAFSery~~~n~~~~~~~kDavFvLsYSIIMLNTDqHNpqVK~~MT~dDf~rNlrg~n~g 677 (1386)
T KOG0928|consen 598 RLFLESFRLPGESQKIERVLEAFSERYYSDNSPDIFADKDAVFVLSYSIIMLNTDQHNPQVKRKMTFDDFIRNLRGINGG 677 (1386)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHhcCCCccccccchhhhhhhhhheecccccChhhhccCCHHHHhhhcccccCC
Confidence 99999999999999999999999999999887 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCccccCCCCCCCCCCCChhHHHHHHHhhccCCCccccCcchhccHHHHHhchhhHHHHHHHHH
Q 046443 730 NDLPREFLSELYHSICKNEIRTTPEQGVGFPEMTPSRWIDLMHKSKKTAPFIVADSKAYLDHDMFAIMSGPTIAAISVVF 809 (1469)
Q Consensus 730 ~d~~~~~L~~iy~~I~~~~i~~~~~~~~~~~~~~~~~w~~ll~~s~~~~~~~~~~~~~~~~~~mf~~~w~pilaals~~f 809 (1469)
+|||+|||.+||++|+++||+||++| +|..+++.++|+.+++|++.+.||+.++...++|++||..+|||+++|++++|
T Consensus 678 ~DFpreyLseiY~SIk~~EIvmPee~-hG~~~~~~~~W~~L~~~sktt~~~~~~~~~~~~drdlF~~v~gp~iaals~vF 756 (1386)
T KOG0928|consen 678 KDFPREYLSEIYQSIKTNEIVMPEEH-HGTEEMFEYRWINLISRSKTTEPFILRDFTLVYDRDLFAMVWGPIIAALSYVF 756 (1386)
T ss_pred CCCCHHHHHHHHHHHhhcceeccccc-CCchhhhHHHHHHHHhcccccCceeeccchhhhhHHHHHHHccchHHHHHHHh
Confidence 99999999999999999999999998 99989989999999999999999999998889999999999999999999999
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCCCCC-ccccccccCccHHHHHHHHHHHHHHhhcC
Q 046443 810 EHAEHEEVYQTCIDGFLAVAKISACHHLEDVLDDLVVSLCKFTTLLNPAA-VEEPVLAFGDDTKARMATVSVFTIANRYG 888 (1469)
Q Consensus 810 ~~a~D~~i~~~~L~gf~~~a~ia~~~~l~~~~D~lv~sL~k~t~L~~~~~-~~~~~v~fG~~~K~~la~~~Lf~ia~~~G 888 (1469)
+.+++++++++|++|+++||.|+++||+.+++|.++.+|||||+|.+|.. +++.+.+||+|.|+++|+.++|.+++++|
T Consensus 757 d~a~~d~I~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~~~eel~~~fged~ka~~At~tvf~~~n~~G 836 (1386)
T KOG0928|consen 757 DVAESDTILQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSSTPEELVLAFGEDTKARMATLTVFFGANKFG 836 (1386)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCccCchHHHHHhcccchhHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999998875 67788899999999999999999999999
Q ss_pred CchhccHHHHHHHHHHHHHhcCCCccccccccccccccCCCCCCCcccCCCCCC-CCCCCCCCCCCCCcccccccccccC
Q 046443 889 DFIRTGWRNILDCILRLHKLGLLPARVASDAADESELSADPSQGKPITNSLSSA-HMPSIGTPRRSSGLMGRFSQLLSLD 967 (1469)
Q Consensus 889 ~~L~~sW~~Il~~i~~L~~~~Llp~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~-~~~~~~~~~~~~gllS~fssyls~~ 967 (1469)
++++.+|++|++|+++|+++.|+|..+.+++....+. +..+++|.+ +....++++.++|++|+|+||++++
T Consensus 837 d~i~~gw~nI~~~~l~l~r~~llp~~~~e~~~~~~~~--------~~~~~~~~~~~~~~~~k~~~ss~Lls~fs~~Ls~d 908 (1386)
T KOG0928|consen 837 DLIRVGWRNIVECLLQLNRLVLLPLRLIEDLKNEPEL--------LKLNKLPVPQQEISINKPRKSSGLLSRFSSYLSGD 908 (1386)
T ss_pred cHHHHHHHHHHHHHHHHHhhccCcHhhhhhhhcCccc--------cccCCCCCCccccCcccccccchHHHHHHHhcCCc
Confidence 9999999999999999999999999988765433221 122334433 2333456679999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhhhhchhHHHhhcccCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCcchhHHHHHHHHH
Q 046443 968 TEEPRSQPTEQQLAAHQRTLQTIQKCHIDSIFTESKFLQAESLLQLARALIWAAGRPQKGNSSPEDEDTAVFCLELLIAI 1047 (1469)
Q Consensus 968 s~e~~~eps~eei~~~~~a~~cI~s~~i~~LF~~s~~L~~esL~~lv~aL~~~s~~~~~~~~~~~~e~~~~F~Le~lv~v 1047 (1469)
+.+.+|.||+||+.+.++|++||++|+++++|+++++|+.+++..++++|+..+... +.++|+..+||+|+++.|
T Consensus 909 ~e~~~~~Ptee~l~~~~~a~~cIk~c~i~~if~~s~~l~~~~l~~Ll~Sli~~s~~~-----s~~de~s~~F~lElli~I 983 (1386)
T KOG0928|consen 909 EEEERPCPTEEELSASKKALECIKECHIDQIFTKSKFLQAKSLLTLLKSLIAASNDL-----SMEDEESAVFCLELLIAI 983 (1386)
T ss_pred ccccCCCCcHHHHhhhHHHhhHHHhcCHHHHhhhcccccHHHHHHHHHHHHHhcCCc-----cCcccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998642 567889999999999999
Q ss_pred HhhcchhhHHhHHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHhcChHHHHHHHHH
Q 046443 1048 TLNNRDRIVLLWQGVYEHIANIVQSTVM-PCALVEKAVFGLLRICQRLLPYKENLADELLRSLQLVLKLDARVADAYCEQ 1126 (1469)
Q Consensus 1048 ~l~N~~Ri~~~W~~v~~hL~~i~~~~~~-~~~l~erAv~~L~rl~~rll~~~e~l~~~lL~~L~~l~~l~~~v~~~v~~~ 1126 (1469)
.+.|+||+..+|+.+++|+..+++.+.. +|.++++|+.|++|+|+|++.|++.+.++++++++.++++++.+.+.+.++
T Consensus 984 ~l~nrdri~l~w~~~~e~ll~~~~~~~~~~~~lvek~v~gl~rv~~rll~yk~~l~d~l~~sl~~ll~L~~ki~d~~~~k 1063 (1386)
T KOG0928|consen 984 TLSNRDRILLSWFAVYEHLLGLLIQTLMGSPLLVEKAVSGLLRVVNRLLPYKEFLSDELLDSLRILLKLDPKILDAFLDK 1063 (1386)
T ss_pred HhccccceEeeehhhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHhhcHHHHHHHHHH
Confidence 9999999999999999999999987655 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCcccCccChHHHHHHHHhhhcCCcchHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHhhcCchh
Q 046443 1127 ITQEVSRLVKANATHIRSQMGWRTITSLLSITARHPEASEAGFEALLFIMSDGTHLLPANYVLCIDSARQFAESRVGQAE 1206 (1469)
Q Consensus 1127 Il~~L~~ll~~~~~~i~s~~gW~~If~iL~~~~~~~~~~~~aFe~L~lIi~d~~~l~~~nf~~cVd~l~~F~~q~~~~~~ 1206 (1469)
|...+.+++..++.++++..||.+++.+|..+++||++....|..+...+.|..|++|+||..||+|.+.|++.+.+.+.
T Consensus 1064 i~i~~~~lv~~n~~~v~~~~~w~~~~slL~~~~~h~~a~~~~~~~~l~~m~e~~hl~~~~fe~~v~~~~~fve~~~~~~~ 1143 (1386)
T KOG0928|consen 1064 IAIFVSKLVKANAANVHSKDGWALLFSLLELTARHPEADFLKFYRLLSKMSEASHLTPDNFELYVDCGSTFVEARVGQIM 1143 (1386)
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhcCCchhHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888788899999999999999999999999877788
Q ss_pred hHHHHHHHHHhhhHhhhhhhhhhhhccChhh-hhhhhhhHHhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCC
Q 046443 1207 RSVRALELMSGSVDCLARWGREAKESMGEDE-VAKLSQDIGEMWLRLVQALRKVCLDQREDVRNHALLSLQKCLTGVDGI 1285 (1469)
Q Consensus 1207 ~Sl~AI~Ll~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~lW~pLLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~ 1285 (1469)
+++..++.+......+.||....++...+.+ ..+.+.....+|++|++.++++|++.|++|||+|++.|||+ ..+.++
T Consensus 1144 ~~l~~lde~s~sg~~~~kw~~~~~~~~~~~~~~~~~~~~~~~~wl~l~~~~~kl~L~~r~~vRn~aL~~lqr~-~~~~~q 1222 (1386)
T KOG0928|consen 1144 RSLSLLDEMSSSGEVLDKWEIEAKNATESGDESKKSNNYRSEIWLILLQIIRKLCLLSRRGVRNAALTKLQRI-IGALDQ 1222 (1386)
T ss_pred HhcchhhhhcccccchhHHHHHHhhhhcccccccccchhhHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHH-HHhhhc
Confidence 9999999998888888899765554433332 22233444669999999999999999999999999999997 548899
Q ss_pred CCChhhHHHHHHHhhhhhhHHHHHHhhcCCcchhcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 046443 1286 HLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDYRNMEGTLILAMKLLSKVFLQLLHELSQLTTFCKLWLGVLSRMEKYM 1365 (1469)
Q Consensus 1286 ~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d~~~~~ET~~~al~lLskvFl~~L~~L~~~~~f~~lWl~iLd~~~~~m 1365 (1469)
.+.+..|..||+.|+||+++++++.-...++... .|++|++++.++++|+|++|+..+++.+.|..+|+++|++|++||
T Consensus 1223 ~l~~~~~~~Cf~~vlfpll~~l~~~l~~~~~~~~-~me~t~~~~~~Ll~k~~L~~lq~ls~~~~f~~Lwl~~ld~m~~l~ 1301 (1386)
T KOG0928|consen 1223 GLAHSYWNPCFDLVLFPLLTDLLELLSDASEKGN-EMEVTLLLATKLLSKVFLQELQDLSSLSMFSTLWLGVLDRMEKLM 1301 (1386)
T ss_pred ccchHHHHHHHHHHhHHHHHHHHHHhcccccccc-hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999876433333333 599999999999999999999999999999999999999999999
Q ss_pred HhhccCCcchhHHHHHHHHHHHHHHhhhcCCccccccCCCccchHHHHHHHHHHHhhhhhcccCCCCCCCCcccccCCCC
Q 046443 1366 KVKVRGKKSEKLQEIVPELLKNTLLIMKTRGVLVQRSALGGDSLWELTWLHVNNIVPSLQSEVFPDQDSDQPQLKQSDNG 1445 (1469)
Q Consensus 1366 ~~~~~~~~s~~L~Eav~EsLKN~LlvM~~~gil~~~~~~~~~~lW~~Tw~~i~~~~P~L~~elfp~~~~~~~~~~~~~~~ 1445 (1469)
+...++++++.++|++||.+|||++||++.|++.+.+.-+.+.+|+.||.++++|.|+|+.||||+.+..++++..+++.
T Consensus 1302 ~~~~~e~~~~~l~e~~pe~l~~~~~~m~~~ei~~~~~~~~~~~~w~~tw~~~~~~~p~l~~El~~~~e~~~~~~~~~~~~ 1381 (1386)
T KOG0928|consen 1302 RGKTSEETSDKLNEIVPELLKNMLLVMKLQEIILDKDEIGKDSLWEITWERLNKIAPSLRDELFPDTEIDDPKPDEKQPE 1381 (1386)
T ss_pred hcccccchhhhHHhhhhhhhhhhhhhhhccccccCcccccccchHHHHHHHHHhcCchhhhhhCCCCCCCCCCCcccCcc
Confidence 99888888999999999999999999999999988766667889999999999999999999999999999999999998
Q ss_pred CCCcc
Q 046443 1446 GGLVS 1450 (1469)
Q Consensus 1446 ~~~~~ 1450 (1469)
++++|
T Consensus 1382 ~~~~~ 1386 (1386)
T KOG0928|consen 1382 QSTVP 1386 (1386)
T ss_pred CCCCC
Confidence 88875
No 2
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=4.5e-176 Score=1738.89 Aligned_cols=1277 Identities=24% Similarity=0.405 Sum_probs=964.7
Q ss_pred CCCChhhhhHHHHHHhccCCCCcchHHHHHHHHHHHHhcCCCCCCCc----cHHHHHHHHHHHHhcccccccCCcchHHH
Q 046443 87 HTINPAAYLQPFLDVIRSDETGAPITSIALSSVYKILSLDVIDQNSI----NVEEAMHLVVDAVTSCRFEVTDPASEEVV 162 (1469)
Q Consensus 87 ~~~d~~~~l~PFl~vi~S~~t~~~iT~~AL~sl~kfl~~~~i~~~s~----~~~~a~~~i~~avt~crfe~td~~~De~V 162 (1469)
...+|..++.||.++|+|+ +.+|+.+||+||+|+++||+|+...+ ....-+..++++|+.| |+ ..||.|
T Consensus 80 ~~~~~~~i~~pl~lac~s~--~~ki~~~ALdcl~KLis~~~i~~~~~~~~~~~~~lid~~i~~Ic~c-~~----~~de~i 152 (1780)
T PLN03076 80 SLAESELILSPLINACGTG--SAKIVDPALDCIQKLIAHGYLRGEADPSGGPEALLLAKLIESVCKC-HD----LGDEGI 152 (1780)
T ss_pred cccCHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHHHHhhcCCCCCCCCCccccHHHHHHHHHHhh-cc----CCchHH
Confidence 3458999999999999999 99999999999999999999955332 2336788899999999 43 468899
Q ss_pred HHHHHHHHHHHHccCCccccchhHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHHHHhccCCCCCCcchh---hcc
Q 046443 163 LMKILQVLLACMKSKASIVLSNQHVCTIVNTCFRIVHQAGNKGELSQRIARHTMHELVRCIFSHLPDVDNSEHA---LVN 239 (1469)
Q Consensus 163 llkILqvL~~~~~~~~g~~L~~~~v~~~l~~c~~l~~~~~~~se~lr~tAe~tl~~~v~~iF~rl~~~~~~~~~---~~~ 239 (1469)
+|+|||+|+++|+++. ..+||+++.++|++||+|.- .+|+++++.||.+||+|||..||+|+..-...... .++
T Consensus 153 qLqilk~Ll~~v~s~~-~~vhg~~LLkaVR~cyni~l--~Sks~~nq~tA~atLtQmv~~VF~R~e~~~~~~~~~~~~~~ 229 (1780)
T PLN03076 153 ELLVLKTLLSAVTSTS-LRIHGDCLLQAVRTCYDIYL--GSKNVVNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVA 229 (1780)
T ss_pred HHHHHHHHHHHHcCCC-ceeEHHHHHHHHHHhheeee--cCCcHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 9999999999999975 55999999999999999943 37999999999999999999999999632211000 000
Q ss_pred cccccccccC--------------CCCCCcccCCccccCCCCC--CCccccc-cccccCCCCcccc---c---ccccc--
Q 046443 240 GVTAVKQEIG--------------GLDTDYAFGGKQLENGNGG--SEYEGQQ-SFANLVSPSGVVA---T---MMEEN-- 294 (1469)
Q Consensus 240 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~---~---~~~~~-- 294 (1469)
+......... ....+......+.....+. ...++.. ......+..+.+. + ...+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1780)
T PLN03076 230 ELMEPAEKSDSDTSMTQFVQGFITKIMQDIDGVLNPATAGKSSGSGAHDGAFETTATVETTNPADLLDSTDKDMLDAKYW 309 (1780)
T ss_pred cccccccccccccchhhhhhhhhhhhccccccccCcccccccccccccccccccccccCCCCcchhhccccccccccccc
Confidence 0000000000 0000000000000000000 0000000 0000000000000 0 00000
Q ss_pred ------cCCCCCCC---CCcc-cccccC---CCCCChhHHHHHHHHHHhccCCCCCCCCCCCCCccccccchhHHHHHHH
Q 046443 295 ------MNGSSTGK---DSVS-YDLHLM---TEPYGVPCMVEIFHFLCSLLNISEHMTMGPRSNTIALDEDVPLFALRLI 361 (1469)
Q Consensus 295 ------~~~~~~~~---~~~~-~~~~~~---~~pyg~~~~~~lf~~L~sLi~~~~~~~~~~~~n~~~~~~~~~~~~L~Li 361 (1469)
....+... +.+. .+.... ..-|--| ++.+||.||.|....-+... ..-.+.-..|++||+||
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kD-AflvFr~lCkLs~K~~~~~~----~~d~~~~rsKllsL~Li 384 (1780)
T PLN03076 310 EISMYKSALEGRKGELADGEVEKDDDLEVQIGNKLRRD-AFLVFRALCKLSMKTPPKEA----LADPQLMRGKILALELL 384 (1780)
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhhhh-HHHHHHHHHHHhCCCCCCCc----cccHHHHHHHHHHHHHH
Confidence 00000000 0000 000000 0124456 58999999999753111000 00012335789999999
Q ss_pred HHHHHhcCcccCCchHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 046443 362 NSAIELGGPAIRRHPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYHHLRTELKLQLEAFFSCVILRLAQSRHG 441 (1469)
Q Consensus 362 ~~~le~~g~~~~~~p~l~~li~d~l~~~Ll~~~~s~~~~i~~~~lri~~~L~~~~r~~Lk~q~E~fl~~l~~~l~~~~~~ 441 (1469)
+++||++|+.|.+||.|+.+||++||++|++++.|+.++||+++|+||++|+.+||.|||.|+|+||+.|++++++...+
T Consensus 385 ~~ile~~g~~f~~~~~fi~~ik~~Lc~sL~~n~~S~~~~vf~lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~ 464 (1780)
T PLN03076 385 KILLENAGAVFRTSDRFLGAIKQYLCLSLLKNSASSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQ 464 (1780)
T ss_pred HHHHhcccHhhhcCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCHHHHHHHHHHHHHHhcChhHHHHHHHhcCCCCCCCcHHHHHHHHHHhccCCCCCCc---------hhhHHHHHHHHHH
Q 046443 442 ASYQQQEVAMEALVDFCRQKTFMVEMYANLDCDITCSNVFEDLANLLSKSAFPVNCPL---------SAMHILALDGLIA 512 (1469)
Q Consensus 442 ~~~~~r~l~LE~l~~l~~~p~~~~~ly~NYDCd~~~~nlfe~l~~~L~k~a~~~~~~~---------~~~~~laLe~ll~ 512 (1469)
++++||+++||+|.++|++|++++|+|+|||||.+++||||++++.|+|++++..+.. ..++.+||+||++
T Consensus 465 ~s~~qK~~~L~~L~~lc~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~ 544 (1780)
T PLN03076 465 PNFQQKMIVLRFLDKLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVA 544 (1780)
T ss_pred CCHHHHHHHHHHHHHHHhCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999754322 4678999999999
Q ss_pred HHHHHHHHhhcCCCCCCC-C--------CCcccccCcccccc-------cCCCCC---CCCchHHHHHHHHHHHHHHHHH
Q 046443 513 VIQGMAERIGNASVSSEQ-S--------PVTLEEYTPFWMVK-------CDNYSD---PNHWVPFVRRRKYIKRRLMIGA 573 (1469)
Q Consensus 513 ii~~i~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~-------~~~~~~---~~~~~~~l~~~k~~K~~~~~~~ 573 (1469)
++++|.+|++......+. . ........+.|... .+...+ ...+.+.++++|++|+.+.+|+
T Consensus 545 il~sl~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~ 624 (1780)
T PLN03076 545 ILRSMGDWMNKQLRLPDPASLKKLDAVENNLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQRRAYKLELQEGI 624 (1780)
T ss_pred HHHHHHHHHHhhccCCcccccccchhhccccccccccccccccccccccccccccccccCCcHHHHHHHHHHHHHHHHHH
Confidence 999999998753110000 0 00001112222110 000011 1124467899999999999999
Q ss_pred HhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhhccCCChhHHhhhhcCCchhHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 046443 574 DHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQDMNLDTALRLF 653 (1469)
Q Consensus 574 ~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~igeyl~~~~~~~~~vl~~f~~~fdf~~~~~~~alR~~ 653 (1469)
.+||+|||+||+||+++|++++ +|++||+||+++++|||++||||||++++|+.+||++|++.|||+|++||+|||.|
T Consensus 625 ~~FN~~Pk~Gi~~L~~~~~i~~--~p~~iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~f 702 (1780)
T PLN03076 625 SLFNRKPKKGIEFLINANKVGE--SPEEIAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAF 702 (1780)
T ss_pred HHHccCHHHHHHHHHHcCCCCC--CHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHH
Confidence 9999999999999999999976 89999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhccccccccCCCCHHHHHHhhccCCCCCCCC
Q 046443 654 LETFRLPGESQKIQRVLEAFSERYYEQSPQILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLP 733 (1469)
Q Consensus 654 l~~frlpgE~q~I~ri~e~Fa~~y~~~n~~~~~~~d~~~~l~ysiimLntdlhn~~~k~~mt~~~F~~n~~~~n~g~d~~ 733 (1469)
|++||||||+|+||||||+||+|||+|||+.|.++|++|+|+||+||||||+|||++|+|||+++|+||+||+|+|+|||
T Consensus 703 L~~FrLPGEaQ~IdRime~Fa~rY~~~Np~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp 782 (1780)
T PLN03076 703 LQGFRLPGEAQKIDRIMEKFAERYCKCNPKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLP 782 (1780)
T ss_pred HHhCCCCchHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCccccCCCCCCCCC--CCChhHHHH-----------------------HHHh--------h-ccCCC
Q 046443 734 REFLSELYHSICKNEIRTTPEQGVGFP--EMTPSRWID-----------------------LMHK--------S-KKTAP 779 (1469)
Q Consensus 734 ~~~L~~iy~~I~~~~i~~~~~~~~~~~--~~~~~~w~~-----------------------ll~~--------s-~~~~~ 779 (1469)
++||++||++|+++||+|++++..... .....+|.. ++++ . +..+.
T Consensus 783 ~e~L~~iY~~I~~~ei~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~ 862 (1780)
T PLN03076 783 EEFMRSLYERISKNEIKMKEDDLVPQQKQSANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESV 862 (1780)
T ss_pred HHHHHHHHHHHHhCcccCcccccccccccccccchhhhhHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCc
Confidence 999999999999999999988632111 111111210 1111 0 12345
Q ss_pred ccccCcchhccHHHHHhchhhHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCCCCC
Q 046443 780 FIVADSKAYLDHDMFAIMSGPTIAAISVVFEHAEHEEVYQTCIDGFLAVAKISACHHLEDVLDDLVVSLCKFTTLLNPAA 859 (1469)
Q Consensus 780 ~~~~~~~~~~~~~mf~~~w~pilaals~~f~~a~D~~i~~~~L~gf~~~a~ia~~~~l~~~~D~lv~sL~k~t~L~~~~~ 859 (1469)
|+.+... .+.++||+.+|+|+++|||.+|+.++|+++++.||+||+.|++||++|||+++||+||.+|||||+|.++..
T Consensus 863 f~~a~~~-~~~~~mfe~~W~p~laalS~~~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~~~e 941 (1780)
T PLN03076 863 YYAATDV-VILRFMVEVCWAPMLAAFSVPLDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPAD 941 (1780)
T ss_pred eeecchH-HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCChhh
Confidence 6544433 346999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred ccccccccCccHHHHHHHHHHHHHHhhcCCchhccHHHHHHHHHHHHHhcCCCccccccccccccccCCCCCCCcc-cCC
Q 046443 860 VEEPVLAFGDDTKARMATVSVFTIANRYGDFIRTGWRNILDCILRLHKLGLLPARVASDAADESELSADPSQGKPI-TNS 938 (1469)
Q Consensus 860 ~~~~~v~fG~~~K~~la~~~Lf~ia~~~G~~L~~sW~~Il~~i~~L~~~~Llp~~~~~~~~~~~~~~~~~~~~k~~-~~~ 938 (1469)
++ .||+.|+++||.||+.+|++|++||++||+||++|++++|++.++.++.......+....+++.. ..+
T Consensus 942 mk---------~Knv~Aik~ll~ia~~~Gn~L~~sW~~IL~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~ 1012 (1780)
T PLN03076 942 IK---------QKNIDAIKAIVSIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPI 1012 (1780)
T ss_pred hh---------HHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHhhcCCCcchhhhccccccccccccccccc
Confidence 43 59999999999999999999999999999999999999999998866432221111000011110 000
Q ss_pred CCCCCCCCCCCCC-CCCCcccccccccc-cCCCCCCCCCCHHHHHHHHHH---HhhhhhhchhHHHhhcccCCHHHHHHH
Q 046443 939 LSSAHMPSIGTPR-RSSGLMGRFSQLLS-LDTEEPRSQPTEQQLAAHQRT---LQTIQKCHIDSIFTESKFLQAESLLQL 1013 (1469)
Q Consensus 939 l~~~~~~~~~~~~-~~~gllS~fssyls-~~s~e~~~eps~eei~~~~~a---~~cI~s~~i~~LF~~s~~L~~esL~~l 1013 (1469)
.|.......+..+ ...++.. .++-+ ..+.+....++.+++.....+ ++.|.+|.+++||++|++|+.+|+++|
T Consensus 1013 ~p~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~f 1090 (1780)
T PLN03076 1013 LPVLKRKGPGKLQYAAAAVRR--GSYDSAGVGGKASGVVTSEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDF 1090 (1780)
T ss_pred ccccccccccccchhhhhhcc--cccccccccccccccCCHHHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHH
Confidence 1100000000000 0000110 01100 011122345678888765433 456888999999999999999999999
Q ss_pred HHHHHHhhCCCCCCCCCCCCCcchhHHHHHHHHHHhhcchhhHHhHHHHHHHHHHHHhccCCChh--HHHHHHHHHHHHH
Q 046443 1014 ARALIWAAGRPQKGNSSPEDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHIANIVQSTVMPCA--LVEKAVFGLLRIC 1091 (1469)
Q Consensus 1014 v~aL~~~s~~~~~~~~~~~~e~~~~F~Le~lv~v~l~N~~Ri~~~W~~v~~hL~~i~~~~~~~~~--l~erAv~~L~rl~ 1091 (1469)
|+|||.+|.++... .++|++|+|++|++|+++||+||+.+|+.+|+++.+++...+.+.+ ++.-|+.+|.+++
T Consensus 1091 v~AL~~vS~eEl~~-----~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs 1165 (1780)
T PLN03076 1091 VKALCKVSMEELRS-----PSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLS 1165 (1780)
T ss_pred HHHHHHhhHHHHcc-----CCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHH
Confidence 99999999875432 1478999999999999999999999999999999999987655533 3344666778999
Q ss_pred HHhCCChh----HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCcccCccChHHHHHHHHhhh--cCCcch
Q 046443 1092 QRLLPYKE----NLADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKANATHIRSQMGWRTITSLLSITA--RHPEAS 1165 (1469)
Q Consensus 1092 ~rll~~~e----~l~~~lL~~L~~l~~l~~~v~~~v~~~Il~~L~~ll~~~~~~i~s~~gW~~If~iL~~~~--~~~~~~ 1165 (1469)
.+++.++| .+|+++|+||+.++.-.. ..++++.|++|+.+|+++++++|+| ||++||++|+.++ +++..+
T Consensus 1166 ~kfle~eEL~~f~FQkefLkPfe~im~~s~--~~eVrE~ILeCv~qmI~s~~~nIkS--GWktIF~VLs~aa~d~~e~iV 1241 (1780)
T PLN03076 1166 MKFLEREELANYNFQNEFMKPFVIVMRKSN--AVEIRELIIRCVSQMVLSRVNNVKS--GWKSMFMVFTTAAYDDHKNIV 1241 (1780)
T ss_pred HHhcchhhhhchhHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHhhhhc--CcHHHHHHHHHHHhCccHHHH
Confidence 99998765 689999999999887544 3589999999999999999999999 9999999999776 466789
Q ss_pred HHHHHHHHHHHhcCCC-CC---hhhHHHHHHHHHHHHHhhcCchhhHHHHHHHHHhhhHhhhhhhhhh--h-h---c---
Q 046443 1166 EAGFEALLFIMSDGTH-LL---PANYVLCIDSARQFAESRVGQAERSVRALELMSGSVDCLARWGREA--K-E---S--- 1232 (1469)
Q Consensus 1166 ~~aFe~L~lIi~d~~~-l~---~~nf~~cVd~l~~F~~q~~~~~~~Sl~AI~Ll~~~~~~l~~~~~~~--~-~---~--- 1232 (1469)
+.||+++++|++|+.+ ++ +++|..||+|+.+|+.++.+ .|+|++||+++|.+.+.+.+..... . . .
T Consensus 1242 ~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~-~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~ 1320 (1780)
T PLN03076 1242 LLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFN-KDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPS 1320 (1780)
T ss_pred HHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCc-ccccHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 9999999999999865 44 58999999999999998765 5999999999999887775321100 0 0 0
Q ss_pred ------cChhhhh--hhhhhHHhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhh
Q 046443 1233 ------MGEDEVA--KLSQDIGEMWLRLVQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTML 1304 (1469)
Q Consensus 1233 ------~~~~~~~--~~~~~~~~lW~pLLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLL 1304 (1469)
....+.. ...+....+|+|||.+|.++|.|+|+|||++|+++||++|. .||..|++..|+.||++|||||+
T Consensus 1321 ~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~-~yG~~Fs~~~W~~if~~VLFPIF 1399 (1780)
T PLN03076 1321 SPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLR-NHGHLFSLPLWERVFESVLFPIF 1399 (1780)
T ss_pred cccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-HhhccCCHHHHHHHHHHHHHHHH
Confidence 0000000 11234468999999999999999999999999999999998 89999999999999999999999
Q ss_pred HHHHHHhh--------------cCCcchhcch-HHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhc
Q 046443 1305 DDLLEIAQ--------------GHSQKDYRNM-EGTLILAMKLLSKVFLQLLHELSQLTTFCKLWLGVLSRMEKYMKVKV 1369 (1469)
Q Consensus 1305 d~Ll~~~~--------------~~s~~d~~~~-~ET~~~al~lLskvFl~~L~~L~~~~~f~~lWl~iLd~~~~~m~~~~ 1369 (1469)
+.+..... .++..|.+.| .||.++|+++++.+|.+|+..| ..+..++|+.+..|+..
T Consensus 1400 d~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L------~~~L~~~l~ll~~ci~q-- 1471 (1780)
T PLN03076 1400 DYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTV------NPLLKKVLMLLVSFIKR-- 1471 (1780)
T ss_pred HHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHcC--
Confidence 99853211 0111245667 5999999999999999999775 34788888999999975
Q ss_pred cCCcchhHHHHHHHHHHHHHHhhhcCCccccccCCCccchHHHHHHHHHHHhhh
Q 046443 1370 RGKKSEKLQEIVPELLKNTLLIMKTRGVLVQRSALGGDSLWELTWLHVNNIVPS 1423 (1469)
Q Consensus 1370 ~~~~s~~L~Eav~EsLKN~LlvM~~~gil~~~~~~~~~~lW~~Tw~~i~~~~P~ 1423 (1469)
..+.+...-...|+++++. .+..|. ++-|+.+...+.+++-.
T Consensus 1472 ---~n~~la~ig~~~l~~li~~--ng~~F~-------~~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1472 ---PHQSLAGIGIAAFVRLMSN--AGHLFS-------DEKWLEVVLSLKEAANA 1513 (1780)
T ss_pred ---chHHHHHHHHHHHHHHHHH--hhccCC-------HHHHHHHHHHHHHHHHH
Confidence 3578999999999996654 444442 34666666666555443
No 3
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-131 Score=1257.62 Aligned_cols=1218 Identities=26% Similarity=0.399 Sum_probs=917.3
Q ss_pred CCCCCChhhhhHHHHHHhccCCCCcchHHHHHHHHHHHHhcCCCCCCCcc----HHHHHHHHHHHHhcccccccCCcchH
Q 046443 85 PWHTINPAAYLQPFLDVIRSDETGAPITSIALSSVYKILSLDVIDQNSIN----VEEAMHLVVDAVTSCRFEVTDPASEE 160 (1469)
Q Consensus 85 ~~~~~d~~~~l~PFl~vi~S~~t~~~iT~~AL~sl~kfl~~~~i~~~s~~----~~~a~~~i~~avt~crfe~td~~~De 160 (1469)
+....|+..|++||.++|.++ +.+|+..|++|+||+++||.+..++.. -..-+..++++|+.| |++. ||
T Consensus 37 ~~~~~~~e~~~~p~~la~~t~--~~ki~~~~~dc~~kli~~~~l~g~~~~~~~~~~~l~~~~~~~vc~~-~~~~----~e 109 (1514)
T KOG0929|consen 37 GLSLAEAELYLLPFELACDTK--SPKIVSPALDCLQKLIAYGHLTGESNDSGGPEDLLIDKIIEAVCKC-FDGL----DE 109 (1514)
T ss_pred cCCCcchhhhhChHHhhcCCC--CcchhccHHHHHHHHHHhhhccCCCCCCCCcchhHHHHHHhHhhhc-cCCC----ch
Confidence 466789999999999999999 799999999999999999998775431 224678999999999 4443 99
Q ss_pred HHHHHHHHHHHHHHccCCccccchhHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHHHHhccCCCCCCcchh-hcc
Q 046443 161 VVLMKILQVLLACMKSKASIVLSNQHVCTIVNTCFRIVHQAGNKGELSQRIARHTMHELVRCIFSHLPDVDNSEHA-LVN 239 (1469)
Q Consensus 161 ~VllkILqvL~~~~~~~~g~~L~~~~v~~~l~~c~~l~~~~~~~se~lr~tAe~tl~~~v~~iF~rl~~~~~~~~~-~~~ 239 (1469)
.|+++++.+|.+.|.++.. .++++++..++.+||.+... + .+-+.+|.+||.||+..||.|......+... .++
T Consensus 110 ~~elq~~k~lL~av~s~~~-~i~~~~ll~~vr~c~~iyl~--s--~~nq~~ak~~L~qml~~vf~~~e~~~~~~~~i~vs 184 (1514)
T KOG0929|consen 110 SVELQVLKALLAAVTSQHI-EIHGDSLLLIVRTCYNIYLG--S--PINQTTAKATLTQMLNIVFRRMEEDSSDESQILVS 184 (1514)
T ss_pred hhhHhHHHHHHHHHhccce-eecCcchHHHHHHHHHHHhc--C--cccchHHHHHHHHHHHHHHHHhhhccCcccccccc
Confidence 9999999999999999754 49999999999999999653 3 7899999999999999999998643322110 111
Q ss_pred cccccccccCCCCCCcccCCccccCCCCCCCccccccccccCCCCccccccc--ccccCCCC------CCCCCccccccc
Q 046443 240 GVTAVKQEIGGLDTDYAFGGKQLENGNGGSEYEGQQSFANLVSPSGVVATMM--EENMNGSS------TGKDSVSYDLHL 311 (1469)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~ 311 (1469)
.......++.+....+......++.+.+. ++++..++.....+.+. .++..... .+.+.+. +...
T Consensus 185 ~~~~~~~~~~s~~~~~~~i~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 257 (1514)
T KOG0929|consen 185 ELLRVSDDPSSTEFVQQFIDSIMEVLVAS------PEDVGLTEMLDDNVNENSKTGDSLSLRDAESPESESERDD-DSER 257 (1514)
T ss_pred cccccCCCcchhHHHHHHHHHHHHhccCC------ccccccccccccccccccccCcccccCcccccccccccCc-chhh
Confidence 00000000000000000000000000000 00000000000000000 00000000 0000000 0111
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHH
Q 046443 312 MTEPYGVPCMVEIFHFLCSLLNISEHMTMGPRSNTIALDEDVPLFALRLINSAIELGGPAIRRHPRLLSLIQDELFRNLM 391 (1469)
Q Consensus 312 ~~~pyg~~~~~~lf~~L~sLi~~~~~~~~~~~~n~~~~~~~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~d~l~~~Ll 391 (1469)
...+....-+..+||-||+|.....+.. .++...+ -..++++|+||..+++++|+.|..+..++..+|++||-.|.
T Consensus 258 ~~~~~~~~Daflvfr~Lckls~k~~s~~---~~d~~s~-~R~k~lsl~ll~~il~~~~~vf~s~~~fi~aikqyKOGals 333 (1514)
T KOG0929|consen 258 SSQNKLQRDAFLVFRALCKLSMKPLSSE---ESDTQSH-MRSKLLSLELLKSILENSGSVFRSNEHFIDAIKQYLCLALS 333 (1514)
T ss_pred ccccHHHHhHHHHHHHHHHhhCCCCCCC---CCChHHH-HhhhHHHHHHHHHHHhccchhhcCchhhHHHHHHHHHHHHh
Confidence 2223333336889999999965322211 1122222 34679999999999999999999999999999999999999
Q ss_pred HhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcChhHHHHHHHhc
Q 046443 392 QFGLSMSPLILSMVCSIVLNLYHHLRTELKLQLEAFFSCVILRLAQSRHGASYQQQEVAMEALVDFCRQKTFMVEMYANL 471 (1469)
Q Consensus 392 ~~~~s~~~~i~~~~lri~~~L~~~~r~~Lk~q~E~fl~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~~p~~~~~ly~NY 471 (1469)
++..|..+.+|+++|.||+.|+..+|.|+|.|+|+||+.++.++++.... +++|+.+.|..+..+|.+|+.++++|+||
T Consensus 334 kn~vS~~~~vfe~s~~If~~lls~~r~~~K~ei~vff~~i~~~ile~~t~-s~~qk~~~l~~~~~ic~d~q~~Vdi~vny 412 (1514)
T KOG0929|consen 334 KNSVSNVPMVFELSCTIFVSLLSNFRTHLKAEIEVFFSEIFLRILENNTS-SFQQKMMVLRILTRICADPQTLVDIYVNY 412 (1514)
T ss_pred hcccccchHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhcCCC-cccchhHHHHHHhhhcCCCccccccccCC
Confidence 99999999999999999999999999999999999999999999998764 89999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHhccCCC-CC-----Cc--hhhHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCC-cc-ccc-C
Q 046443 472 DCDITCSNVFEDLANLLSKSAFPV-NC-----PL--SAMHILALDGLIAVIQGMAERIGNAS-VSSEQSPV-TL-EEY-T 539 (1469)
Q Consensus 472 DCd~~~~nlfe~l~~~L~k~a~~~-~~-----~~--~~~~~laLe~ll~ii~~i~~~~~~~~-~~~~~~~~-~~-~~~-~ 539 (1469)
|||....||||++++.++|.++.. +. |. ..+...++.||.++.+++..|.++.. .....++. .. ... .
T Consensus 413 dcd~~~~nifer~v~~ltk~a~g~~~s~~~~~P~~~~~~~~~s~kcL~s~l~s~s~w~~~~~~~~~~~t~~~~~~~~~~~ 492 (1514)
T KOG0929|consen 413 DCDSNSQNIFERLVNGLSKIAQGRTGSNLELSPVQELALRLKSLKCLVSILKSMSGWNDNQLNVEGVITGKKSSTTPIEN 492 (1514)
T ss_pred ccccCCccHHHHHHhhHHHhhcCCCccccCCCCchhhhHhhhhhhhHHHHHHhhhhhccccccCCCcccCccccCcchhh
Confidence 999999999999999999999762 11 11 24567899999999999999987521 11000000 00 000 0
Q ss_pred cccc-cccCCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhhccCCChhHHh
Q 046443 540 PFWM-VKCDNYSDPNHWVPFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVG 618 (1469)
Q Consensus 540 ~~~~-~~~~~~~~~~~~~~~l~~~k~~K~~~~~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~ig 618 (1469)
.+.. .....-++|+ ..+..|.+|. +.+|+..||.+||+||+||+++|++.+ +|.++|+||+.+.++||+++|
T Consensus 493 ~~~s~~~~~~~~~~~----q~e~~k~ek~-l~~~i~~fN~kpkkgi~~l~s~~~v~~--sp~eiaeFL~~t~~l~kt~ig 565 (1514)
T KOG0929|consen 493 ELNSDTQSNDADDPE----QFEALKSEKQ-LQEGIQLFNGKPKKGISFLDSKGTVGT--SPLEIAEFLIGTEGLSKTILG 565 (1514)
T ss_pred hccCccccccccChh----hhhhhhhhcc-hHHHHHHhccCCccCchhhhhcCCCCC--CHHHHHHHHHhccCCCHHHHH
Confidence 0000 0000001222 2355667777 899999999999999999999999986 799999999999999999999
Q ss_pred hhhcCCchhHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCCC-CCCCcchHHHHHHH
Q 046443 619 DFLGNHDEFCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQ-ILANKDAALLLSYS 697 (1469)
Q Consensus 619 eyl~~~~~~~~~vl~~f~~~fdf~~~~~~~alR~~l~~frlpgE~q~I~ri~e~Fa~~y~~~n~~-~~~~~d~~~~l~ys 697 (1469)
+|||+.++|+.+||++|++.|||++++|++|||.||+.||||||+|+|||+|++||+|||+|||+ +|.|+|+||+||||
T Consensus 566 dyLGe~d~~~~~VMhayVd~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFssADtaYVLAfS 645 (1514)
T KOG0929|consen 566 DYLGEDDDFNKAVMHAYVDLFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFSSADTAYVLAFS 645 (1514)
T ss_pred HHhcCCcchhHHHHHHHHHhhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCCCccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHhhhccccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHhhcCccccCCCCCCCC-CCCC-------------
Q 046443 698 LIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICKNEIRTTPEQGVGF-PEMT------------- 763 (1469)
Q Consensus 698 iimLntdlhn~~~k~~mt~~~F~~n~~~~n~g~d~~~~~L~~iy~~I~~~~i~~~~~~~~~~-~~~~------------- 763 (1469)
+||||||+|||++|+|||++||++|+||+|+|+|+|++||+.+|+.|..+||+|.++.+.-. .+.+
T Consensus 646 lIMLnTDlHnp~vKnKMTK~dFI~nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~~~~~~~~s~~~~~~~~~~~~~ 725 (1514)
T KOG0929|consen 646 LIMLNTDLHNPNVKNKMTKADFIRNNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSLLPISSESSNLPKLLGLTGILN 725 (1514)
T ss_pred HHHHhccccCchhhccccHHHHHHhcccccCcccChHHHHHHHHHHhhhccccccccccccccCCCCcchhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999987652200 0000
Q ss_pred ---hhHHH---------HHHHhhc-cCCCccccCcchhccHHHHHhchhhHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 046443 764 ---PSRWI---------DLMHKSK-KTAPFIVADSKAYLDHDMFAIMSGPTIAAISVVFEHAEHEEVYQTCIDGFLAVAK 830 (1469)
Q Consensus 764 ---~~~w~---------~ll~~s~-~~~~~~~~~~~~~~~~~mf~~~w~pilaals~~f~~a~D~~i~~~~L~gf~~~a~ 830 (1469)
+.++. .+..+.. ..+.|.......++ +.||+.+|.|+++|++..|..++|..+...|++||+.+.+
T Consensus 726 l~~~~r~~~~~~s~~~~~~~e~~s~~~s~~~~ath~~~V-r~m~e~~W~p~laafs~~~~~sdd~~~~n~cl~g~r~ai~ 804 (1514)
T KOG0929|consen 726 LRSNSRMSAIDMSASQSQLKEKGSLSESVFYSATHLISV-RPMFESLWTPMLAAFSVGLQDSDDLEIANLCLDGFRLAIS 804 (1514)
T ss_pred cchhhhhhHHHhhhhHHHHHHhcccccccceecccceee-eccccccccchhhhhchhhhcCCccccccccccchhheee
Confidence 11111 0111111 23455544444444 8999999999999999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHHHHHhccCCCCCCccccccccCccHHHHHHHHHHHHHHhhcCCchhccHHHHHHHHHHHHHhcC
Q 046443 831 ISACHHLEDVLDDLVVSLCKFTTLLNPAAVEEPVLAFGDDTKARMATVSVFTIANRYGDFIRTGWRNILDCILRLHKLGL 910 (1469)
Q Consensus 831 ia~~~~l~~~~D~lv~sL~k~t~L~~~~~~~~~~v~fG~~~K~~la~~~Lf~ia~~~G~~L~~sW~~Il~~i~~L~~~~L 910 (1469)
|++.|+|+..+|+|+.+|++||.+..+..+. .||..|++++..|+...|+++.++|.+|+.|+.++++.++
T Consensus 805 ia~~f~~~~~rdAfv~al~~ft~l~~~~e~k---------~kNi~aik~l~~ia~t~gn~l~~sW~~Il~cisqlE~~ql 875 (1514)
T KOG0929|consen 805 IASIFSMELGRDAFVQALARFTNLHAPSEMK---------QKNIDAIKALLEIADTDGNKLFDSWLDILKCISQLEHTQL 875 (1514)
T ss_pred ehhhhcCCccccHHHHHHHHHHhccCHHHHh---------HhhHHHHHHHHHHhhcccchhHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987765443 5999999999999999999999999999999999999999
Q ss_pred CCccccccccccccccCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCHHHHHHHHHHHhhh
Q 046443 911 LPARVASDAADESELSADPSQGKPITNSLSSAHMPSIGTPRRSSGLMGRFSQLLSLDTEEPRSQPTEQQLAAHQRTLQTI 990 (1469)
Q Consensus 911 lp~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~gllS~fssyls~~s~e~~~eps~eei~~~~~a~~cI 990 (1469)
++.+.......+.. +.+... ..++++. -.++.+++. +. .....++.. |
T Consensus 876 i~sg~~~~~~~~~~------s~~~~~-----------~~~~~~~-~~~~~~s~~-----e~--~~~~~s~s~-------v 923 (1514)
T KOG0929|consen 876 IGSGSPPNKLPFVV------SQREDY-----------KKPGGSY-DSSGDGSRI-----EN--VGEKSSVSV-------V 923 (1514)
T ss_pred hcCCCCcccCcchh------hhchhc-----------cCCcccc-cccccccch-----hc--cccchhHHH-------H
Confidence 99887654322111 000000 0000000 000011110 00 001111111 1
Q ss_pred hhhchhHHHhhcccCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCcchhHHHHHHHHHHhhcchhhHHhHHHHHHHHHHHH
Q 046443 991 QKCHIDSIFTESKFLQAESLLQLARALIWAAGRPQKGNSSPEDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHIANIV 1070 (1469)
Q Consensus 991 ~s~~i~~LF~~s~~L~~esL~~lv~aL~~~s~~~~~~~~~~~~e~~~~F~Le~lv~v~l~N~~Ri~~~W~~v~~hL~~i~ 1070 (1469)
.++++||+++..++.++++.|+++||+++.+....+ ..|++|.++|+++|+.+||.||+..|..+|..+.+.+
T Consensus 924 --i~~d~Ift~S~~l~~eaIv~FvkaLc~vs~~eL~s~-----~~PrlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F 996 (1514)
T KOG0929|consen 924 --IQMDRIFTSSQRLDSEAIVDFVKALCKVSMDELLSP-----STPRLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFF 996 (1514)
T ss_pred --HHhhhhhcccccCCchHHHHHHHHHHHHHHHHhcCC-----CCCCeeecccceeeeccccccchhhHHHHHHHhhhhh
Confidence 248999999999999999999999999997654321 5799999999999999999999999999999999999
Q ss_pred hccCCChhHHH--HHHHHHHHHHHHhCCChh----HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCcccC
Q 046443 1071 QSTVMPCALVE--KAVFGLLRICQRLLPYKE----NLADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKANATHIRS 1144 (1469)
Q Consensus 1071 ~~~~~~~~l~e--rAv~~L~rl~~rll~~~e----~l~~~lL~~L~~l~~l~~~v~~~v~~~Il~~L~~ll~~~~~~i~s 1144 (1469)
...+.+.+... -|+..+.++..+++...| .+|+++++|+..+++-+.. .+|++.|++|+. +++++
T Consensus 997 ~~vg~~~n~~vaifa~DslRQlsmkfle~~el~~f~Fq~~fl~Pfe~im~~s~s--~~Irelv~rC~~-------~nikS 1067 (1514)
T KOG0929|consen 997 VSVGCNSNESVAIFALDSLRQLSMKFLERSELDNFRFQKDFLRPFEHIMKRSSS--AEIRELVVRCIS-------SNIKS 1067 (1514)
T ss_pred hccccCCCCceEEEehhhhHHhhhhhcchhhhhhhhHHHhhcCcchHHhhccCc--chhHHHHHhhhh-------hhhhh
Confidence 87654333211 134445555556554322 5789999999999876654 479999999998 78899
Q ss_pred ccChHHHHHHHHhhhcCC--cchHHHHHHHHHHHhcC-CCCCh---hhHHHHHHHHHHHHHhhcCchhhHHHHHHHHHhh
Q 046443 1145 QMGWRTITSLLSITARHP--EASEAGFEALLFIMSDG-THLLP---ANYVLCIDSARQFAESRVGQAERSVRALELMSGS 1218 (1469)
Q Consensus 1145 ~~gW~~If~iL~~~~~~~--~~~~~aFe~L~lIi~d~-~~l~~---~nf~~cVd~l~~F~~q~~~~~~~Sl~AI~Ll~~~ 1218 (1469)
||+.||+++..++... ..+..+|+.+..++++. .++.| +.|..||.|+.+|+.+.. ..+.|+.||.+++.+
T Consensus 1068 --GWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~-~~~~s~~aI~~lr~c 1144 (1514)
T KOG0929|consen 1068 --GWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEFTKNLG-FPDDSLNAIRFLRLC 1144 (1514)
T ss_pred --hhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHhcC-CCccchHHHHHHHHH
Confidence 9999999999988654 46789999999888876 45555 789999999999998764 348999999999888
Q ss_pred hHhhhhh--hhhhhhccChhhhhhhhhhHHhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHH
Q 046443 1219 VDCLARW--GREAKESMGEDEVAKLSQDIGEMWLRLVQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCF 1296 (1469)
Q Consensus 1219 ~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~lW~pLLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f 1296 (1469)
+..+... ....+ . .++ . ....|..+|+|++.+|..+|.++|.+||..|++.||.++. .||+.|...+|+.+|
T Consensus 1145 a~k~~e~~~~~~~~-~--~~~-~-~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~-~~g~~F~~~~We~v~ 1218 (1514)
T KOG0929|consen 1145 ALKLAEGVYNEKLK-V--GKD-S-EFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILK-EHGDDFSKEFWEDVF 1218 (1514)
T ss_pred HHHhccccchhhcc-c--ccc-c-ccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHH-hhhhhccHHHHHHHH
Confidence 7766532 11111 0 000 0 2346889999999999999999999999999999999999 999999999999999
Q ss_pred HHhhhhhhHHHHHHhhcCCcchhcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCCcchh
Q 046443 1297 DMVIFTMLDDLLEIAQGHSQKDYRNMEGTLILAMKLLSKVFLQLLHELSQLTTFCKLWLGVLSRMEKYMKVKVRGKKSEK 1376 (1469)
Q Consensus 1297 ~~VLFPLLd~Ll~~~~~~s~~d~~~~~ET~~~al~lLskvFl~~L~~L~~~~~f~~lWl~iLd~~~~~m~~~~~~~~s~~ 1376 (1469)
. +|||+++.+......... + .+|.+|+++|+..++.+|.+|++.+. .+..+++..+..|++.+ ...
T Consensus 1219 ~-~~fpIF~~~~~~~~~~~~-~-eW~~tT~~~Al~~~v~lf~~~~~~l~------~lL~~~~~ll~~ci~~~-----n~~ 1284 (1514)
T KOG0929|consen 1219 R-ILFPIFDNVKLDEDESEK-D-EWLSTTCNHALQALVDLFTQFFKQLN------NLLPKVLGLLVGCIKQD-----NQQ 1284 (1514)
T ss_pred H-heeecccccCcccchhhh-h-HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCc-----chh
Confidence 9 999999999544333212 2 28899999999999999999999863 57888899999999864 345
Q ss_pred HHHHHHHHHHHHHHhhhcCCccccccCCCccchHHHHHHHHHHHhhh
Q 046443 1377 LQEIVPELLKNTLLIMKTRGVLVQRSALGGDSLWELTWLHVNNIVPS 1423 (1469)
Q Consensus 1377 L~Eav~EsLKN~LlvM~~~gil~~~~~~~~~~lW~~Tw~~i~~~~P~ 1423 (1469)
+..+..+.|-+++.. .+.-| ...-|+++...|...+-.
T Consensus 1285 la~~g~~cl~~l~~~--n~~~f-------se~~Wde~~~~~~e~~~~ 1322 (1514)
T KOG0929|consen 1285 LARIGTSCLLQLVSS--NGEKF-------SEEDWDEICNCILEAFKT 1322 (1514)
T ss_pred hHHhHHHHHHHHHHh--ccccc-------CHhhHHHHHHHHHHHHHh
Confidence 777777877775443 22333 335788888877666543
No 4
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=100.00 E-value=7.2e-66 Score=655.23 Aligned_cols=830 Identities=22% Similarity=0.299 Sum_probs=573.5
Q ss_pred hhHHHHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046443 353 VPLFALRLINSAIELGGPAIRRHPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYHHLRTELKLQLEAFFSCVI 432 (1469)
Q Consensus 353 ~~~~~L~Li~~~le~~g~~~~~~p~l~~li~d~l~~~Ll~~~~s~~~~i~~~~lri~~~L~~~~r~~Lk~q~E~fl~~l~ 432 (1469)
++..+..=.+.++.+.++.+..|+.|+.++.+.+|..+.+..+++..+++..+|.+++.++..++.+.|.+.+.||..++
T Consensus 20 ~~s~~~r~~l~~l~~~~~~l~~~~~l~~~~~~~~~l~~~~~a~s~~~~v~~v~~~i~~~~~~~~~~~f~~~~~~~f~s~~ 99 (1024)
T COG5307 20 APSQAVRSKLYSLPVSYSILRDFKLLLDLLFPYLRLKLSLSARSPLLPVFEVGLEIIGLRLSNLPKLFKLESSVFFISIY 99 (1024)
T ss_pred chhhhcccccccccchHHHhccchHHHHHhcchhhhhhhhcccccchhhhhhhHHHHHHHHhhhhhhhhhccchHHHHHh
Confidence 33334344444555555666778899999999999999999999999999999999999999999999999999999988
Q ss_pred HHhccCCCCCCH----------------------------------------------------HHHHHHHHHHHHHh-c
Q 046443 433 LRLAQSRHGASY----------------------------------------------------QQQEVAMEALVDFC-R 459 (1469)
Q Consensus 433 ~~l~~~~~~~~~----------------------------------------------------~~r~l~LE~l~~l~-~ 459 (1469)
..+..... .+. ..+++..|.+.-++ +
T Consensus 100 f~i~~~~~-~s~~q~~~~l~~~~~~~~~~rl~~~i~~d~~~~~~~~~~~~~~~~~s~~~t~~p~~~~~~~~e~~~~~~~~ 178 (1024)
T COG5307 100 FPISHTTS-TSLQQKSSELSTSQVVILLSRLERYINYDVGRGFMENITERTAFPLSRPSTNDPPETRSLIIEQLSILWIS 178 (1024)
T ss_pred hhhhcccc-cchhhhhHHhHhhhhhhcccchhhhcccccccccchhhhhccCCccccccccCCCcchhhhhhhhhhcCCC
Confidence 87765432 223 33444555444433 5
Q ss_pred ChhHHHHHHHhcCCCCCCCcHHHHHHHHHHhccCCCCCCc--hhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccc
Q 046443 460 QKTFMVEMYANLDCDITCSNVFEDLANLLSKSAFPVNCPL--SAMHILALDGLIAVIQGMAERIGNASVSSEQSPVTLEE 537 (1469)
Q Consensus 460 ~p~~~~~ly~NYDCd~~~~nlfe~l~~~L~k~a~~~~~~~--~~~~~laLe~ll~ii~~i~~~~~~~~~~~~~~~~~~~~ 537 (1469)
.|.+.++.|.||||+....+..-++++.|.|.+.+.++-. ..++.+|+||++..+.++..-..++...
T Consensus 179 ~~~~~~~~~~~~q~~~~~~~~~is~l~~l~~~sl~~s~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~d---------- 248 (1024)
T COG5307 179 SPYFFLTLISDFQCDLDSSDCSISFLKGLTKNSLVPSAYYTNKDVPPLSGEGLVSGSKSMVNSMKNSSRD---------- 248 (1024)
T ss_pred CCccccccccchhhhhHHHHHHHHHHHHHhhcccchhhhhcccCCCCcccchhhhcCCcccccccccccC----------
Confidence 5555555555555555555555555555555554433211 1233445555554444443322211000
Q ss_pred cCcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhhc-cCCChhH
Q 046443 538 YTPFWMVKCDNYSDPNHWVPFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYT-AGLDKNL 616 (1469)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~k~~K~~~~~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~-~~l~k~~ 616 (1469)
.++..-+.... ...+.|++|+.+++|++.||++|++||..|.+.++++. .++.++|.||..+ +++||+.
T Consensus 249 --------~~s~~~~~~~~-~~~~~k~rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~~-d~~~sia~~L~~~~~~l~k~~ 318 (1024)
T COG5307 249 --------SSSFVNSDSSI-VNLGIKKRKTELIECIQAFNEKPKKGIASLIDSEFIDS-DSHKSIAEILEGTEGRLDKKK 318 (1024)
T ss_pred --------hhhhccchHHH-hhhccccchHHHHHHHHHhhhcCcccchhhcccccCCc-ccchHHHHHHHhccCcccHHH
Confidence 00000000111 13457889999999999999999999999999999984 5889999998766 4599999
Q ss_pred HhhhhcCCchhHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCCCCCCCc-chHHHHH
Q 046443 617 VGDFLGNHDEFCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILANK-DAALLLS 695 (1469)
Q Consensus 617 igeyl~~~~~~~~~vl~~f~~~fdf~~~~~~~alR~~l~~frlpgE~q~I~ri~e~Fa~~y~~~n~~~~~~~-d~~~~l~ 695 (1469)
+|+|||+.+..|..||++|+++|||+|++||+|||.||.+||||||+|+||||||+||.+||+|||..+.++ |+||+||
T Consensus 319 lg~~L~~~~~kn~~vL~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~~Np~~~~~~~D~vyiLa 398 (1024)
T COG5307 319 LGLYLGTDDDKNNAVLREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDNPKKFSSKPDSVYILA 398 (1024)
T ss_pred HHHHhcCCchhHHHHHHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHHhCcccccCccceeehhH
Confidence 999999998778999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhhhccccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHhhcCccccCCCCCCCCCCCChhHHHHHHHhhc
Q 046443 696 YSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICKNEIRTTPEQGVGFPEMTPSRWIDLMHKSK 775 (1469)
Q Consensus 696 ysiimLntdlhn~~~k~~mt~~~F~~n~~~~n~g~d~~~~~L~~iy~~I~~~~i~~~~~~~~~~~~~~~~~w~~ll~~s~ 775 (1469)
||+||||||+|||++|.|||++||++|++|+|+|+|||++||.++|++|+++||+++++| ++........|-.+.....
T Consensus 399 fSlimLNTDlHNp~iK~kMT~~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~-~~~~~~~~~~~~~~~ss~~ 477 (1024)
T COG5307 399 FSLIMLNTDLHNPNIKAKMTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEH-HSSETSPEDNWPSLDSSFT 477 (1024)
T ss_pred HHHHHHhccccChhhhccccHHHHHhhhcccCCccccCHHHHHHHHHHHhhccccchhhc-ccccccccccchhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999998 4432222233443322111
Q ss_pred cCCCccccCcchhccHHHHHhchhhHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCC
Q 046443 776 KTAPFIVADSKAYLDHDMFAIMSGPTIAAISVVFEHAEHEEVYQTCIDGFLAVAKISACHHLEDVLDDLVVSLCKFTTLL 855 (1469)
Q Consensus 776 ~~~~~~~~~~~~~~~~~mf~~~w~pilaals~~f~~a~D~~i~~~~L~gf~~~a~ia~~~~l~~~~D~lv~sL~k~t~L~ 855 (1469)
...++.. +.....++.+|..+|+-+.+++...|..+.++......+.++++|..+|+.|.+++++|+++.+++++|++.
T Consensus 478 ~~~~~~r-d~~~~~~~~~f~~v~~~~et~~~~i~~s~s~~~~~s~~~~si~~~~~ia~~f~~n~p~~~~~~~~s~~t~l~ 556 (1024)
T COG5307 478 NIAEFGR-DNQRVADATHFDHVGPIFETSLFPILMSASDDLYSSDGVVSISKCTRIAANFDFNDPRDAFLESLSEFTTLI 556 (1024)
T ss_pred hhhhccc-ccccchhHhhhhhcchHHHHHHHHHHhhhcchhcccccchHhhcccchhhcceecchhHHHHHHhhccCCcc
Confidence 1111111 122233678999999989999999999999999999999999999999999999999999999999999986
Q ss_pred CCCC---------ccc---------cccccCccHHHHHHHHHHHHHHhhcCC--ch-hccHHHHHHHHHHHHHhcCCCcc
Q 046443 856 NPAA---------VEE---------PVLAFGDDTKARMATVSVFTIANRYGD--FI-RTGWRNILDCILRLHKLGLLPAR 914 (1469)
Q Consensus 856 ~~~~---------~~~---------~~v~fG~~~K~~la~~~Lf~ia~~~G~--~L-~~sW~~Il~~i~~L~~~~Llp~~ 914 (1469)
+.+. .++ .++.+|+..|+|++.+.++.+.++.++ .+ +..|.++-.....++...++-++
T Consensus 557 ~~S~~~~~~~~~~~~d~~~~is~~~~~~~i~~~~~~ql~~v~~~~~~~k~~~~~i~~s~~~~~i~~~~~~~~~~~l~~~~ 636 (1024)
T COG5307 557 NSSVSEGPYLFIPSEDSLLSISVLELAARIGRGFEDQLSDVKLFRLRSKSGNKEILSSSLLSNIENKSLKLYLSSLIEDG 636 (1024)
T ss_pred ccCccccccccCccccccchhhHHHHHHHhcccchhhcchhHHhHHhhccccccccchhhhhhhhhhHhhhhhhhhcCCC
Confidence 5440 111 245789999999999999999999988 33 46999999998888777665432
Q ss_pred ccccccccccccCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCHHHHHHHHHHHhhhhhhc
Q 046443 915 VASDAADESELSADPSQGKPITNSLSSAHMPSIGTPRRSSGLMGRFSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQKCH 994 (1469)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~gllS~fssyls~~s~e~~~eps~eei~~~~~a~~cI~s~~ 994 (1469)
.- ...+.. .. | ...+ -+. -
T Consensus 637 ~~------------------~~~~~~-----------------~~---~---~~~~-~~~-------------------~ 655 (1024)
T COG5307 637 KH------------------FSPSIV-----------------KK---L---GSPE-LPK-------------------L 655 (1024)
T ss_pred cc------------------cccccc-----------------cc---c---cCcc-ccc-------------------c
Confidence 10 000000 00 0 0000 000 1
Q ss_pred hhHHHhhcccCCH-HHHHHHHHHHHHhhCCCCCCCCCCCCCcchhHHHHHHHHHHhhcchhhHHhHHHHHHHHHHHHhcc
Q 046443 995 IDSIFTESKFLQA-ESLLQLARALIWAAGRPQKGNSSPEDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHIANIVQST 1073 (1469)
Q Consensus 995 i~~LF~~s~~L~~-esL~~lv~aL~~~s~~~~~~~~~~~~e~~~~F~Le~lv~v~l~N~~Ri~~~W~~v~~hL~~i~~~~ 1073 (1469)
.++++...+.++. .++..++++++.. ..+ .+ .+|+.+.++..|++++... ..+|..+.......
T Consensus 656 ~~~i~~~~s~~s~~~~~l~~~k~~~~~-d~~----------~~---~~q~~v~~s~~n~~~i~~~-~~i~~~~~~~~~~~ 720 (1024)
T COG5307 656 NPDISSGKSKLSVWSAVLSVFKAILSS-DLP----------SP---PLQKEVDISKKNVDIIKSE-SKISNVLFKNSEGL 720 (1024)
T ss_pred CcccccccccccccchHHHHHHHHHhc-cCC----------CC---CcHHhhhHHhhhhhhhhhh-hHHHhhcccchhhc
Confidence 2445555566666 6788888888882 211 11 6899999999999998654 77777665444321
Q ss_pred --CCChhHHHHHHHHHHHHHHHhCCC----hhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCcccCccC
Q 046443 1074 --VMPCALVEKAVFGLLRICQRLLPY----KENLADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKANATHIRSQMG 1147 (1469)
Q Consensus 1074 --~~~~~l~erAv~~L~rl~~rll~~----~e~l~~~lL~~L~~l~~l~~~v~~~v~~~Il~~L~~ll~~~~~~i~s~~g 1147 (1469)
.....+.+-+......+..++..- ...++..++.++.....++. ...+.+..+.|...++++....+.+ |
T Consensus 721 ~~~~~~~l~~s~~~~~~q~s~~f~~iee~~~~~f~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~s~~~s--~ 796 (1024)
T COG5307 721 SPDLNKTLLESALDSKSQLSSRFLEIEELSDFGFQIALLLPFEYSVEVSL--VVAVKELVIGCSDNLLTEAASSIAS--G 796 (1024)
T ss_pred cccccccchhcccchhhhhccccCChhhhcchhHHHHHhccccccccccc--eeeeeeeehhhHHHHHHHHHHhhhc--c
Confidence 111123333333344444444432 12455666666554443332 2456777888999999998888888 8
Q ss_pred hHHHHHHHHhhhcCCcchHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHHHHHhhcCchhhHHHHHHHHHhhhHhhhhhh
Q 046443 1148 WRTITSLLSITARHPEASEAGFEALLFIMSDGTHLLP-ANYVLCIDSARQFAESRVGQAERSVRALELMSGSVDCLARWG 1226 (1469)
Q Consensus 1148 W~~If~iL~~~~~~~~~~~~aFe~L~lIi~d~~~l~~-~nf~~cVd~l~~F~~q~~~~~~~Sl~AI~Ll~~~~~~l~~~~ 1226 (1469)
+++|.++......+. +...++.+ .++..-.++ .+|...+-+-......... ......+++.+......+..|.
T Consensus 797 -~~i~~~~~~~~~~~~-~~~~~s~~---~~~e~v~s~~n~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~wk 870 (1024)
T COG5307 797 -KTIFEISAYEDLSST-LRYILSSL---SNDELVLSQENLFIELLSSKNEGKQNDKN-LELRLHSVDYLRFLLPNVENWK 870 (1024)
T ss_pred -ccceeeeecccccch-hhhHHHHh---cchhhhhChhhHHHHHHhhhHHHHHhccc-hhhhhccHHHHHHHhHHHHHHH
Confidence 898888765554332 33333332 232333455 4565555333333322221 2455566666555554444442
Q ss_pred hhhhhccChhhhhhhhhhHHhHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhhH
Q 046443 1227 REAKESMGEDEVAKLSQDIGEMWLRLVQALRKVCLD-QREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLD 1305 (1469)
Q Consensus 1227 ~~~~~~~~~~~~~~~~~~~~~lW~pLLq~La~lc~d-~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd 1305 (1469)
-.. ............|.+.+.++.++..+ .--++ |..++ .++..+....|+.++..-++|++.
T Consensus 871 ~~~-------~~~~~~~~~~~~~~~~l~~~~~i~~~~~~l~~--------f~~~l-~~~d~~~~~~~e~i~~~~~~~~~~ 934 (1024)
T COG5307 871 NLS-------SVLSANSNFSKDIFSYLEKYVKIGSSALDLEN--------FDQLL-SLLDDFMSAFWEKISKKESFYIKS 934 (1024)
T ss_pred HHH-------HHHHhhhhhhHHHHHHHHHHHHhchhhhhHHH--------HHHHH-HhhhHHHHHHHHHHhhhhhheecc
Confidence 110 00011111268899999999988553 23344 66666 577778888999999999999986
Q ss_pred HH
Q 046443 1306 DL 1307 (1469)
Q Consensus 1306 ~L 1307 (1469)
-.
T Consensus 935 ~~ 936 (1024)
T COG5307 935 GA 936 (1024)
T ss_pred cc
Confidence 54
No 5
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.8e-55 Score=544.93 Aligned_cols=1041 Identities=16% Similarity=0.152 Sum_probs=663.4
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCcccchHHHHHHHHHHHhhccCC--CCCCCChhhhhHHHHHHhccCC
Q 046443 29 TLSCMINSEVGAVLAVMRRNRSVRWGGQYMSGDDQLEHSLIQSLKTLRKQIFSWQH--PWHTINPAAYLQPFLDVIRSDE 106 (1469)
Q Consensus 29 ~~~~~v~~e~~~v~~~mr~~~~~rw~~~~~~~~~~~~~pl~~~f~~Lr~~l~~~~~--~~~~~d~~~~l~PFl~vi~S~~ 106 (1469)
++.--+.++...+-+.-||. + ....+.--++++.||+.- +..+ +.-.-.-++++.|||.+|.++
T Consensus 10 sl~~aL~adLrsLsseArkK--------n----n~VK~aAdkSi~~Lr~is-S~s~ds~vlet~~edf~~PfllaC~sr- 75 (1610)
T KOG1848|consen 10 SLVRALLADLRSLSSEARKK--------N----NEVKLAADKSIQELRQIS-SASRDSDVLETPNEDFLVPFLLACISR- 75 (1610)
T ss_pred HHHHHHHHHHHHhhHHHHhh--------c----hHHHHHHHhHHHHHHhhc-cccccccccccCCcccccceeeecccC-
Confidence 34444556666666555544 0 112334557888898853 4332 111122477999999999999
Q ss_pred CCcchHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHHccCCccccchhH
Q 046443 107 TGAPITSIALSSVYKILSLDVIDQNSINVEEAMHLVVDAVTSCRFEVTDPASEEVVLMKILQVLLACMKSKASIVLSNQH 186 (1469)
Q Consensus 107 t~~~iT~~AL~sl~kfl~~~~i~~~s~~~~~a~~~i~~avt~crfe~td~~~De~VllkILqvL~~~~~~~~g~~L~~~~ 186 (1469)
+.+.+-+||+|+||+..|..++|. +.++-+..=+.|+ -++ |..|||+||+.+.++.+ ++..++++.
T Consensus 76 -~tRl~~ials~iQkL~~~dsleps--~~aeildn~L~a~--------~qa--e~~QLrvLQtiPii~~s-yl~fi~~p~ 141 (1610)
T KOG1848|consen 76 -NTRLFVIALSCIQKLGRHDSLEPS--VTAEILDNNLWAA--------AQA--EWIQLRVLQTIPIIFFS-YLTFITGPP 141 (1610)
T ss_pred -cccceeeHHHHHHHHhccCCCCCc--ccHHHHHHHHHHH--------HHH--HHHHHhhhccccceeee-ceeeccCcH
Confidence 999999999999999999999984 2222222222222 222 56999999999999999 577899999
Q ss_pred HHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhcccccccccccCCCCCCcccCCccccCCC
Q 046443 187 VCTIVNTCFRIVHQAGNKGELSQRIARHTMHELVRCIFSHLPDVDNSEHALVNGVTAVKQEIGGLDTDYAFGGKQLENGN 266 (1469)
Q Consensus 187 v~~~l~~c~~l~~~~~~~se~lr~tAe~tl~~~v~~iF~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1469)
+...+..||++.+++ ++ ++-+||.+|++|+|..||+|++...+..+. ..+.
T Consensus 142 l~kll~iCfnLl~~k-nk--vV~NaAaAtlrQlV~~vFdrv~ies~~~d~------------------------~l~s-- 192 (1610)
T KOG1848|consen 142 LLKLLIICFNLLYQK-NK--VVFNAAAATLRQLVLLVFDRVPIESDAFDF------------------------ILPS-- 192 (1610)
T ss_pred HHHHHHHHHHHHcCC-Cc--ceechhHHHHHHHHHHHHHhcccccccccc------------------------cchh--
Confidence 999999999999874 34 999999999999999999999832221110 0000
Q ss_pred CCCCccccccccccCCCCcccccccccccCCCCCCCCCcccccccCCCCCChhHHHHHHHHHHhccCCCCCCCCCCCCCc
Q 046443 267 GGSEYEGQQSFANLVSPSGVVATMMEENMNGSSTGKDSVSYDLHLMTEPYGVPCMVEIFHFLCSLLNISEHMTMGPRSNT 346 (1469)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pyg~~~~~~lf~~L~sLi~~~~~~~~~~~~n~ 346 (1469)
....+.+.. -+. ......|.--+ |.-.|..+|.+....+++. .
T Consensus 193 -----------l~~~s~t~s------l~a-------------a~~~~~~l~~d-I~~~~~~i~l~~~~~~~~~------L 235 (1610)
T KOG1848|consen 193 -----------LTEASGTSS------LEA-------------ALTALDPLQKD-ICVGFENIQLMYPAIFDQL------L 235 (1610)
T ss_pred -----------hhccCCccc------hhh-------------cccccchHHHh-HhcchHHHHHhcccccHhH------H
Confidence 000000000 000 00011222222 4556667777666544432 2
Q ss_pred cccccchhHHHHHHHHHHHHhcCcccCCchHHH--HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHH
Q 046443 347 IALDEDVPLFALRLINSAIELGGPAIRRHPRLL--SLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYH-HLRTELKLQ 423 (1469)
Q Consensus 347 ~~~~~~~~~~~L~Li~~~le~~g~~~~~~p~l~--~li~d~l~~~Ll~~~~s~~~~i~~~~lri~~~L~~-~~r~~Lk~q 423 (1469)
....+.++..|++++++++-.....+-.|..|. .++++..||++.++.. .+++++..+.. ..-...+.+
T Consensus 236 ~~Iee~~~s~~~elLesilks~~s~~dq~qdf~~a~ll~~~~~Py~~Rl~~--------~sv~~i~~l~~~ea~~~~ev~ 307 (1610)
T KOG1848|consen 236 AFIEESTKSPGLELLESILKSNASKSDQIQDFAPAELLALNVVPYAERLLL--------RSVDLIQKLACHEAVVNEEVL 307 (1610)
T ss_pred hcchhccccchhhhhhhhhhcchhhhHHHHHhhHHHHHHhhhHHHHHHHHH--------HHHHHHHHHhccHHHHHHHHH
Confidence 234566889999999999999999999999999 9999999999998743 33333333332 233334455
Q ss_pred HHHHHHHHHHHhccC-------------------------------------------CCCCCHHHHHHHHHHHHHHhcC
Q 046443 424 LEAFFSCVILRLAQS-------------------------------------------RHGASYQQQEVAMEALVDFCRQ 460 (1469)
Q Consensus 424 ~E~fl~~l~~~l~~~-------------------------------------------~~~~~~~~r~l~LE~l~~l~~~ 460 (1469)
+|++.+.+.+.++-. ....+.|+|.+++|++..++.+
T Consensus 308 lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~~lk~~s~~~~~~p~~l~~~~~~siv~k 387 (1610)
T KOG1848|consen 308 LNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLASLLKFDSMDLELWPRFLDFLFLKSIVPK 387 (1610)
T ss_pred HHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHHHhhhhhcCcccCccHhHHHhhccCCCC
Confidence 555555444221100 0013568999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCCcHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccCc
Q 046443 461 KTFMVEMYANLDCDITCSNVFEDLANLLSKSAFPVNCPLSAMHILALDGLIAVIQGMAERIGNASVSSEQSPVTLEEYTP 540 (1469)
Q Consensus 461 p~~~~~ly~NYDCd~~~~nlfe~l~~~L~k~a~~~~~~~~~~~~laLe~ll~ii~~i~~~~~~~~~~~~~~~~~~~~~~~ 540 (1469)
+..+..++.|+||++.+.+++++.+.-++..++ ++|- ..+-.+|.+...+..
T Consensus 388 ~dsi~~~trn~diktk~thlldk~~~plan~vy-----------~~lv--~ti~nsi~e~l~k~s--------------- 439 (1610)
T KOG1848|consen 388 NDSIQIFTRNFDIKTKVTHLLDKEILPLANFVY-----------KELV--GTISNSIQEMLNKSS--------------- 439 (1610)
T ss_pred chhhHHHHhhcccCcchHHHHhhcccccchhHH-----------HHHH--HhhhHHHHHHHHHhH---------------
Confidence 999999999999999999999988777665443 2221 123334443322110
Q ss_pred ccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhhccCCChhHHhhh
Q 046443 541 FWMVKCDNYSDPNHWVPFVRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDF 620 (1469)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~l~~~k~~K~~~~~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~igey 620 (1469)
...|-..|-.+ .+||++-. ..|...
T Consensus 440 ----------------------------~esg~~eFt~k-~k~Ie~~~-------dnds~s------------------- 464 (1610)
T KOG1848|consen 440 ----------------------------IESGGSEFTSK-EKGIELRE-------DNDSMS------------------- 464 (1610)
T ss_pred ----------------------------HhhcCccchhh-hcCceeec-------cCchHH-------------------
Confidence 00000011111 12333310 012111
Q ss_pred hcCCchhHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHH
Q 046443 621 LGNHDEFCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILANKDAALLLSYSLIM 700 (1469)
Q Consensus 621 l~~~~~~~~~vl~~f~~~fdf~~~~~~~alR~~l~~frlpgE~q~I~ri~e~Fa~~y~~~n~~~~~~~d~~~~l~ysiim 700 (1469)
.+++..+.. .-+.-+|. .-..+.++||+..
T Consensus 465 --------tavl~~l~~--------------------------------------~~~~li~e----~~~ss~~avSt~~ 494 (1610)
T KOG1848|consen 465 --------TAVLLQLSF--------------------------------------SNKVLIPE----GLYSSRMAVSTLL 494 (1610)
T ss_pred --------HHHHHHHHh--------------------------------------hhhhhccc----cchhhhHHHHHHH
Confidence 222222100 00000111 1122344444433
Q ss_pred hhhccccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHhhcCccccCCCCCCCCCCCChhHHHHHHHhhccCCCc
Q 046443 701 LNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICKNEIRTTPEQGVGFPEMTPSRWIDLMHKSKKTAPF 780 (1469)
Q Consensus 701 Lntdlhn~~~k~~mt~~~F~~n~~~~n~g~d~~~~~L~~iy~~I~~~~i~~~~~~~~~~~~~~~~~w~~ll~~s~~~~~~ 780 (1469)
|+-.+|-.- |..- +.+ .+. .++
T Consensus 495 -------------~~a~~v~~l------------------~~~~--------~~~-s~k------------------~~l 516 (1610)
T KOG1848|consen 495 -------------KRAQDVLHL------------------YIED--------EVL-SNK------------------CPL 516 (1610)
T ss_pred -------------HHHHHHHHH------------------hhhh--------hhh-ccC------------------Ccc
Confidence 112222210 0000 000 000 000
Q ss_pred cccCcchhccHHHHHhchhhHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHhccCCCC---
Q 046443 781 IVADSKAYLDHDMFAIMSGPTIAAISVVFEHAEHEEVYQTCIDGFLAVAKISACHHLEDVLDDLVVSLCKFTTLLNP--- 857 (1469)
Q Consensus 781 ~~~~~~~~~~~~mf~~~w~pilaals~~f~~a~D~~i~~~~L~gf~~~a~ia~~~~l~~~~D~lv~sL~k~t~L~~~--- 857 (1469)
..+ +....-+++....|..++++++.....+.|+.+...++.+....++.||..+-.+++++++..||+|+....+
T Consensus 517 ~~~-~kLe~i~~a~~snq~tildalks~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs 595 (1610)
T KOG1848|consen 517 PRQ-TKLEIIFDAVLSNQSTILDALKSTLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVS 595 (1610)
T ss_pred ccc-eeehhHHHHHhhccccHHHHhhhhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHH
Confidence 000 0112235567788999999999999999999999999999999999999999999999999999999864211
Q ss_pred -------CC-------ccc------------------c-----c----cccCccHHHHHHHHHHHHHHhhcCCchhccHH
Q 046443 858 -------AA-------VEE------------------P-----V----LAFGDDTKARMATVSVFTIANRYGDFIRTGWR 896 (1469)
Q Consensus 858 -------~~-------~~~------------------~-----~----v~fG~~~K~~la~~~Lf~ia~~~G~~L~~sW~ 896 (1469)
.+ .++ | + -+.-.+.||..|.|++++++..+-..++.+|.
T Consensus 596 ~lr~l~s~Spv~gr~~~sew~~dfetw~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~ 675 (1610)
T KOG1848|consen 596 RLRCLNSESPVVGRKMGSEWKIDFETWDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWS 675 (1610)
T ss_pred HHhhccccCccccccCCcceEEEEeeccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHH
Confidence 00 000 0 0 01224689999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CccccccccccccccCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCC
Q 046443 897 NILDCILRLHKLGLL-PARVASDAADESELSADPSQGKPITNSLSSAHMPSIGTPRRSSGLMGRFSQLLSLDTEEPRSQP 975 (1469)
Q Consensus 897 ~Il~~i~~L~~~~Ll-p~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~gllS~fssyls~~s~e~~~ep 975 (1469)
.++.+...|.+..-. |....... +.+ .+..+.+|
T Consensus 676 llm~t~~~ls~~~~m~p~qt~l~v-------------------------------~t~--------------~~~hp~~p 710 (1610)
T KOG1848|consen 676 LLMYTTSSLSQPAYMEPLQTLLAV-------------------------------ITS--------------SSVHPIQP 710 (1610)
T ss_pred HHHHHHHHhcchhhcCHHHhhHHH-------------------------------Hhc--------------CCCCCCCc
Confidence 999999888653222 21100000 000 01112233
Q ss_pred CHHHHHHHHHHHhhhhhhchhHHHhhcccCCHHHHHHHHHHHHHhhCCCC-----CCCCCCCCCcchhHHHHHHHHHHhh
Q 046443 976 TEQQLAAHQRTLQTIQKCHIDSIFTESKFLQAESLLQLARALIWAAGRPQ-----KGNSSPEDEDTAVFCLELLIAITLN 1050 (1469)
Q Consensus 976 s~eei~~~~~a~~cI~s~~i~~LF~~s~~L~~esL~~lv~aL~~~s~~~~-----~~~~~~~~e~~~~F~Le~lv~v~l~ 1050 (1469)
+.+-+... +-+.+.+.--+++|.+++.++..+...+++||++++.... ...++....+ |.+...+-....
T Consensus 711 ~~~~~~~y--nd~~~lssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~~~~sslr~~~---~~l~v~~~~~~l 785 (1610)
T KOG1848|consen 711 LTAPRQSY--NDDLLLSSLKNSVYKTSANRSISSGISLLRALIELSYSSLILETVCSCSSLRFLD---SKLDVSGWSLIL 785 (1610)
T ss_pred chhhHHHH--HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhhcccccccccc---chhhhhHHHHHH
Confidence 32211111 1112223334889999999999999999999999876311 0011111112 444555555555
Q ss_pred cchhhHHhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCChh----HHHHHHHHHHHHHHhcChHHHHHHHHH
Q 046443 1051 NRDRIVLLWQGVYEHIANIVQSTVMPCALVEKAVFGLLRICQRLLPYKE----NLADELLRSLQLVLKLDARVADAYCEQ 1126 (1469)
Q Consensus 1051 N~~Ri~~~W~~v~~hL~~i~~~~~~~~~l~erAv~~L~rl~~rll~~~e----~l~~~lL~~L~~l~~l~~~v~~~v~~~ 1126 (1469)
|-.|-...|....+||.....+... .+.-.+..++-+.+..-..++. +-+..++-++.......+. .+++..
T Consensus 786 ~e~snq~~~~naa~~l~t~~n~vl~--s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~--~evr~~ 861 (1610)
T KOG1848|consen 786 KELSNQFKIINAAPELRTRANNVLA--SILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRG--VEVRIS 861 (1610)
T ss_pred HHhhhHHHHHHhHHHHHHHHHHHHH--HHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCcc--ceeeHH
Confidence 5556566788888877765543210 1111111111111110000111 1122333333333223332 245556
Q ss_pred HHHHHHHHHhcccCcccCccChHHHHHHHHhhh-----cCCcchHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHHHHHh
Q 046443 1127 ITQEVSRLVKANATHIRSQMGWRTITSLLSITA-----RHPEASEAGFEALLFIMSDGT-HLLPANYVLCIDSARQFAES 1200 (1469)
Q Consensus 1127 Il~~L~~ll~~~~~~i~s~~gW~~If~iL~~~~-----~~~~~~~~aFe~L~lIi~d~~-~l~~~nf~~cVd~l~~F~~q 1200 (1469)
-+++|..+++..|+.+-+ ||..||++|+.+. ++.+.+++||++|++|++||. .++.+|+..|||++..|++|
T Consensus 862 sl~~l~silet~ge~ll~--~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~fs~Q 939 (1610)
T KOG1848|consen 862 SLEALVSILETVGEHLLH--GWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVFSRQ 939 (1610)
T ss_pred HHHHHHHHHhccchhhcc--ccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHHHhh
Confidence 669999999999999988 8999999999755 466789999999999999995 68889999999999999999
Q ss_pred hcCchhhHHHHHHHHHhhhHhhhhhhhhhhhc----cChhhhh-hh---hhhHHhHHHHHHHHHHHhhcCCcHHHHHHHH
Q 046443 1201 RVGQAERSVRALELMSGSVDCLARWGREAKES----MGEDEVA-KL---SQDIGEMWLRLVQALRKVCLDQREDVRNHAL 1272 (1469)
Q Consensus 1201 ~~~~~~~Sl~AI~Ll~~~~~~l~~~~~~~~~~----~~~~~~~-~~---~~~~~~lW~pLLq~La~lc~d~r~EVR~~Ai 1272 (1469)
++|. |+|++||+++|++.+++.+-..+..+. .+.++.. .+ -..++.+|+.|+..|+++|.|.|+||||+|+
T Consensus 940 ktdl-NISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAv 1018 (1610)
T KOG1848|consen 940 KTDL-NISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAV 1018 (1610)
T ss_pred hccc-cccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHhhhHH
Confidence 9875 999999999999999987622111110 0011110 11 1244799999999999999999999999999
Q ss_pred HHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHHHHhhc--CCcchhcchHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 046443 1273 LSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQG--HSQKDYRNMEGTLILAMKLLSKVFLQLLHELSQLTTF 1350 (1469)
Q Consensus 1273 qtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~~~~~--~s~~d~~~~~ET~~~al~lLskvFl~~L~~L~~~~~f 1350 (1469)
|||||++. +||..|++..|+.|||+|+||||+...--.+. ....+.++|+||.+++++|++|+|..|+..|..+++|
T Consensus 1019 qtlfri~~-Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~llnln~f 1097 (1610)
T KOG1848|consen 1019 QTLFRIFN-SHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKLLLNLNGF 1097 (1610)
T ss_pred HHHHHHHh-hhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHHHHhcccH
Confidence 99999999 99999999999999999999999865211111 1123468999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHhhhcCCccccc---------------cCCCccchHHHHHH
Q 046443 1351 CKLWLGVLSRMEKYMKVKVRGKKSEKLQEIVPELLKNTLLIMKTRGVLVQR---------------SALGGDSLWELTWL 1415 (1469)
Q Consensus 1351 ~~lWl~iLd~~~~~m~~~~~~~~s~~L~Eav~EsLKN~LlvM~~~gil~~~---------------~~~~~~~lW~~Tw~ 1415 (1469)
.+.|..+|+||+|.... .+.++.-++..++..++...-..|-+.-. -......-|...|+
T Consensus 1098 ~~vwe~ll~flkrl~s~-----~s~e~slsai~~~qell~sii~~~~ln~~~~~k~n~vf~~y~~~~~~~ssas~~t~~k 1172 (1610)
T KOG1848|consen 1098 LDVWEELLQFLKRLHSD-----ISPEISLSAIKALQELLFSIIEFGKLNATFTLKINLVFINYGRFCEVSSSASERTLAK 1172 (1610)
T ss_pred HHHHHHHHHHHHHHHhc-----CChHhHHHHHHHHHHHHHHHhhhccccchHHHHhhhhhhhHhhhcccccccchhHHHH
Confidence 99999999999998764 46778888889999888777555543110 00113356889999
Q ss_pred HHHHHhhhhhc
Q 046443 1416 HVNNIVPSLQS 1426 (1469)
Q Consensus 1416 ~i~~~~P~L~~ 1426 (1469)
-+.+++-+|-+
T Consensus 1173 v~~eiltgl~~ 1183 (1610)
T KOG1848|consen 1173 VSQEILTGLIE 1183 (1610)
T ss_pred HHHHHHhhhHH
Confidence 99888888763
No 6
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=100.00 E-value=3.7e-49 Score=425.18 Aligned_cols=183 Identities=57% Similarity=0.891 Sum_probs=178.4
Q ss_pred HHHHHHHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhhccCCChhHHhhhhcCCchhHHHHHHHHHhcCCCCCCC
Q 046443 566 KRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQDMN 645 (1469)
Q Consensus 566 K~~~~~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~igeyl~~~~~~~~~vl~~f~~~fdf~~~~ 645 (1469)
|+.+..|+.+||+||++||+||++.+++++ .||++||+||+.+++|||++||+|||++++++.+||++|++.|||+|++
T Consensus 2 k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~-~~~~~iA~fl~~~~~l~k~~ig~~L~~~~~~~~~vL~~y~~~f~f~~~~ 80 (185)
T cd00171 2 KTLLSEGRQLFNRKPKKGISFLIEKGFLED-DSPKEIAKFLYETEGLNKKAIGEYLGENNEFNSLVLHEFVDLFDFSGLR 80 (185)
T ss_pred cHHHHHHHHHHccCHHHHHHHHHHCCCCCC-CCHHHHHHHHHhCCCCCHHHHHHHHcCCchHHHHHHHHHHHhcCCCCCC
Confidence 678999999999999999999999999953 3899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHhhhccccccccCCCCHHHHHHhhc
Q 046443 646 LDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILA-NKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNR 724 (1469)
Q Consensus 646 ~~~alR~~l~~frlpgE~q~I~ri~e~Fa~~y~~~n~~~~~-~~d~~~~l~ysiimLntdlhn~~~k~~mt~~~F~~n~~ 724 (1469)
||+|||.||.+|+||||+|+||||||+||++||+|||+.+. |+|+||+|+||+||||||+|||++|+|||+++|++|++
T Consensus 81 i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~~~~ 160 (185)
T cd00171 81 LDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLR 160 (185)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHhHHhcCcccCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHhhcCcc
Q 046443 725 HINGGNDLPREFLSELYHSICKNEI 749 (1469)
Q Consensus 725 ~~n~g~d~~~~~L~~iy~~I~~~~i 749 (1469)
|+++|++||+++|++||++|+.+||
T Consensus 161 ~~~~~~~~~~~~L~~iY~~I~~~~~ 185 (185)
T cd00171 161 GINDGEDFPREFLKELYDSIKNNEI 185 (185)
T ss_pred cccCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999986
No 7
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=100.00 E-value=2.2e-49 Score=430.30 Aligned_cols=187 Identities=52% Similarity=0.873 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhhccCCChhHHhhhhcCCchhHHHHHHHHHhcCCCC
Q 046443 563 KYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQ 642 (1469)
Q Consensus 563 k~~K~~~~~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~igeyl~~~~~~~~~vl~~f~~~fdf~ 642 (1469)
|++|+.+.+|+.+||++|++||+||+++|+++.+.+|++||+||+.+++|||++||+|||++++++.+||++|++.|||+
T Consensus 2 k~~k~~l~~~~~~FN~~p~~gi~~l~~~~~~~~~~~~~~iA~fL~~~~~l~k~~ige~Lg~~~~~n~~vL~~y~~~fdf~ 81 (190)
T PF01369_consen 2 KKRKRQLEEGVELFNKNPKKGIEYLIQNGFLENEDDPKSIAKFLFQTPGLDKKKIGEYLGKDNPFNRDVLKEYISLFDFS 81 (190)
T ss_dssp GHHHHHHHHHHHHHHHSHHHHHHHHHHTTSSTS-SSHHHHHHHHHHTTTS-HHHHHHHHTSSSHHHHHHHHHHHHTSS-T
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHhccchHHHHHHHHHHHHcCCc
Confidence 67899999999999999999999999999996566999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCCC--CCCCcchHHHHHHHHHHhhhccccccccCCCCHHHHH
Q 046443 643 DMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQ--ILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFI 720 (1469)
Q Consensus 643 ~~~~~~alR~~l~~frlpgE~q~I~ri~e~Fa~~y~~~n~~--~~~~~d~~~~l~ysiimLntdlhn~~~k~~mt~~~F~ 720 (1469)
|++||+|||.||.+|+||||+|+|||||++||++||+|||+ .|.|+|+||+|+||+||||||+|||++++|||+++|+
T Consensus 82 ~~~i~~ALR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~~d~v~~l~~slimLnTdlHn~~~~~kmt~~~Fi 161 (190)
T PF01369_consen 82 GMSIDEALRKFLSSFRLPGESQQIDRILEAFSERYYECNPNSTPFKSPDTVYILAYSLIMLNTDLHNPNIKKKMTKEDFI 161 (190)
T ss_dssp TS-HHHHHHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSSHHHHHHHHHHHHHHHHHHH-TTSSSS--HHHHH
T ss_pred CccHHHHHHHhcceeeeccchHHHHHHHHHHHHHHHHhCCcccccccHhHHHHHHHHHHHHhHHHHhhccccCCcHHHHH
Confidence 99999999999999999999999999999999999999995 8999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCCCHHHHHHHHHHhhcCcc
Q 046443 721 RNNRHINGGNDLPREFLSELYHSICKNEI 749 (1469)
Q Consensus 721 ~n~~~~n~g~d~~~~~L~~iy~~I~~~~i 749 (1469)
+|++|+++|+++|+++|.+||++|+.+||
T Consensus 162 ~~~~~~~~~~~~~~~~L~~iY~~I~~~~~ 190 (190)
T PF01369_consen 162 KNTRGIDDGKDIPEEFLESIYDSIKANPF 190 (190)
T ss_dssp HHTTTTBTTBS--HHHHHHHHHHHHHS--
T ss_pred HHhhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999986
No 8
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=100.00 E-value=1.8e-48 Score=421.31 Aligned_cols=184 Identities=59% Similarity=0.886 Sum_probs=179.3
Q ss_pred HHHHHHHHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhhccCCChhHHhhhhcCCchhHHHHHHHHHhcCCCCCC
Q 046443 565 IKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQDM 644 (1469)
Q Consensus 565 ~K~~~~~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~igeyl~~~~~~~~~vl~~f~~~fdf~~~ 644 (1469)
+|+.+.+|+.+||++|++||+||+++|++.+ .||++||+||+.++++||+.||+|||++++++.+||++|++.|||+|+
T Consensus 2 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~-~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vL~~y~~~f~f~~~ 80 (187)
T smart00222 2 RKKLLSEGSVKFNDKPKKGIDSLQEKGFLAK-DDPQDVADFLSKNEGLNKKAIGDYLGEHDEFNRLVLHAFVDLFDFSAK 80 (187)
T ss_pred chHHHHHHHHHHccCHHHHHHHHHHcCCCCC-CCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhcCcCCC
Confidence 4778999999999999999999999999985 389999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHHHhhhccccccccCCCCHHHHHHh
Q 046443 645 NLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILA--NKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRN 722 (1469)
Q Consensus 645 ~~~~alR~~l~~frlpgE~q~I~ri~e~Fa~~y~~~n~~~~~--~~d~~~~l~ysiimLntdlhn~~~k~~mt~~~F~~n 722 (1469)
+||+|||.||.+|+||||+|+||||||+||++||+|||+.+. |+|++|+|+||+||||||+|||++|+|||+++|++|
T Consensus 81 ~i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~~d~~y~l~~s~lmLnTdlhn~~~k~kmt~~~Fi~~ 160 (187)
T smart00222 81 DLDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPSVFSKLNADAAYTLAYSLIMLNTDLHNPNVKKKMTLEDFIKN 160 (187)
T ss_pred cHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCCccCCCChhHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999987 999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCHHHHHHHHHHhhcCcc
Q 046443 723 NRHINGGNDLPREFLSELYHSICKNEI 749 (1469)
Q Consensus 723 ~~~~n~g~d~~~~~L~~iy~~I~~~~i 749 (1469)
++|+++|.++|+++|++||++|+.+||
T Consensus 161 ~~~~~~~~~~~~~~L~~iY~~I~~~~i 187 (187)
T smart00222 161 VRGSNDGEDLPREFLEELYDSIKNNEI 187 (187)
T ss_pred HhccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999986
No 9
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-48 Score=411.53 Aligned_cols=194 Identities=46% Similarity=0.778 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhhccCCChhHHhhhhcCCchhHHHHHHHHHhcCCC
Q 046443 562 RKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDF 641 (1469)
Q Consensus 562 ~k~~K~~~~~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~igeyl~~~~~~~~~vl~~f~~~fdf 641 (1469)
.+++-+.+..|-.+||.+|+|||+||+++.++.. ||++||.||+.-.||+|.+||+|||++++|+.+||++|++...|
T Consensus 58 t~q~~k~~~~GRKKFNmDP~Kgiq~l~e~~ll~~--dpq~iA~flykGEGLnKtaIG~yLGer~~~nl~vL~aFv~~Hef 135 (395)
T KOG0930|consen 58 TKQRNKQVAMGRKKFNMDPKKGIQFLIENDLLQN--DPEDIARFLYKGEGLNKTAIGDYLGERDEFNLQVLHAFVDLHEF 135 (395)
T ss_pred hHHHhHHHhhchhhcCCChHHHhHHHHHcccccC--CHHHHHHHHHhcCCcchhhHhhhhccCchhHHHHHHHHHHHHHh
Confidence 4555677888999999999999999999999976 89999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhccccccccCCCCHHHHHH
Q 046443 642 QDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIR 721 (1469)
Q Consensus 642 ~~~~~~~alR~~l~~frlpgE~q~I~ri~e~Fa~~y~~~n~~~~~~~d~~~~l~ysiimLntdlhn~~~k~~mt~~~F~~ 721 (1469)
.++++.+|||.||=+||||||+|+|||+||+||++||-|||++|.|+|++|+|+||+|||||.|||||||.|-++|.|+.
T Consensus 136 ~dlnlVqALRQfLwSFRLPGEaQKIdRmmEaFA~rYclcNPgvfqstDtcyvlsfs~IMlNTsLHNpNVrDkP~lErfi~ 215 (395)
T KOG0930|consen 136 TDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTLERFIA 215 (395)
T ss_pred ccchHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcccccCceeeeeeehhhhhcccccCCCCCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCHHHHHHHHHHhhcCccccCCCCCC
Q 046443 722 NNRHINGGNDLPREFLSELYHSICKNEIRTTPEQGV 757 (1469)
Q Consensus 722 n~~~~n~g~d~~~~~L~~iy~~I~~~~i~~~~~~~~ 757 (1469)
++||+|.|.|+|.+.|..+|++|+++++++|++.+.
T Consensus 216 MNrgineggdlpee~LrnlyeSi~~epFkIPeddgn 251 (395)
T KOG0930|consen 216 MNRGINEGGDLPEELLRNLYESIKNEPFKIPEDDGN 251 (395)
T ss_pred HhhccccCCCCcHHHHHHHHHHhcCCCCCCCcccCC
Confidence 999999999999999999999999999999998643
No 10
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-47 Score=425.40 Aligned_cols=189 Identities=41% Similarity=0.757 Sum_probs=183.3
Q ss_pred HHHHHHHHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhhccCCChhHHhhhhcCC-chhHHHHHHHHHhcCCCCC
Q 046443 565 IKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNH-DEFCVQVLHEFAGTFDFQD 643 (1469)
Q Consensus 565 ~K~~~~~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~igeyl~~~-~~~~~~vl~~f~~~fdf~~ 643 (1469)
+|+.+..|..+||+||.|||+||++.||+++ +|..||+||....||+|+|||||||+. ++||.+||+++++.+||++
T Consensus 197 ~kr~YriGlnlfn~kPekGvQ~Li~rGFv~d--tPvgvAhfllqRkGLSrqMIGEflGn~~kqfnrdVLdcvvdemDfss 274 (627)
T KOG0931|consen 197 RKRHYRIGLNLFNKKPEKGVQYLIERGFVPD--TPVGVAHFLLQRKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSS 274 (627)
T ss_pred HHHHhhhccchhcCCcchhhhhhhhhcccCC--CchHHHHHHHhhccchHHHHHHHhccccchhhhHHHHHHHhhhcccc
Confidence 4677889999999999999999999999997 799999999999999999999999986 5899999999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCCCC---CCCcchHHHHHHHHHHhhhcccccccc--CCCCHHH
Q 046443 644 MNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQI---LANKDAALLLSYSLIMLNTDQHNVQVK--KKMTEED 718 (1469)
Q Consensus 644 ~~~~~alR~~l~~frlpgE~q~I~ri~e~Fa~~y~~~n~~~---~~~~d~~~~l~ysiimLntdlhn~~~k--~~mt~~~ 718 (1469)
|.+|+|||.|...||+|||||+|||++|+||.|||.|||.+ |.|.|++|+|||+|||||||+|.|||| +||+++|
T Consensus 275 melDeALRKfqahirvqgEAqKveRlIeAFsqrYc~cNP~~v~qfrnpDTIfiLaFAIIlLNTDmySPnVKperkM~leD 354 (627)
T KOG0931|consen 275 MELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCKCNPKVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKLED 354 (627)
T ss_pred chHHHHHHHHHHHeecccHHHHHHHHHHHHHHHHhccCHHHHhhccCCCeehHHHHHHHHhcccccCCCCCHHHhhhHHH
Confidence 99999999999999999999999999999999999999974 899999999999999999999999999 8999999
Q ss_pred HHHhhccCCCCCCCCHHHHHHHHHHhhcCccccCCCC
Q 046443 719 FIRNNRHINGGNDLPREFLSELYHSICKNEIRTTPEQ 755 (1469)
Q Consensus 719 F~~n~~~~n~g~d~~~~~L~~iy~~I~~~~i~~~~~~ 755 (1469)
|+||+||+++|+|+|+++|..||++|+.+|++..++|
T Consensus 355 FikNLRGvDnGeDIpRell~GIYeRIqk~ELktndDH 391 (627)
T KOG0931|consen 355 FIKNLRGVDNGEDIPRELLVGIYERIQKRELKTNDDH 391 (627)
T ss_pred HHHhccCCCCcccCcHHHHHHHHHHHHHhhcccCcch
Confidence 9999999999999999999999999999999999887
No 11
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=99.96 E-value=2.5e-29 Score=269.40 Aligned_cols=164 Identities=35% Similarity=0.583 Sum_probs=145.3
Q ss_pred CCChhHHHHHHHHHHhccCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHhcCcccC---CchHHHHHHHHHHHHHHH
Q 046443 315 PYGVPCMVEIFHFLCSLLNISEHMTMGPRSNTIALDEDVPLFALRLINSAIELGGPAIR---RHPRLLSLIQDELFRNLM 391 (1469)
Q Consensus 315 pyg~~~~~~lf~~L~sLi~~~~~~~~~~~~n~~~~~~~~~~~~L~Li~~~le~~g~~~~---~~p~l~~li~d~l~~~Ll 391 (1469)
.|+.++++++|++||+|+....+.+..| .+..+++.+|++||+||+++|+++|+.|. +||.++.++|+++|++|+
T Consensus 2 ~~~~~Da~~vf~~Lc~L~~~~~~~~~~~--~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll 79 (168)
T PF12783_consen 2 NYYVKDAFLVFRDLCSLSSKPSDPGNSP--DFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALL 79 (168)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCc--chhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHH
Confidence 3567778999999999984222211112 23345778999999999999999999999 666999999999999999
Q ss_pred HhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcChhHHHHHHHhc
Q 046443 392 QFGLSMSPLILSMVCSIVLNLYHHLRTELKLQLEAFFSCVILRLAQSRHGASYQQQEVAMEALVDFCRQKTFMVEMYANL 471 (1469)
Q Consensus 392 ~~~~s~~~~i~~~~lri~~~L~~~~r~~Lk~q~E~fl~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~~p~~~~~ly~NY 471 (1469)
+++.++.+++|..++|++++|+.++|.+||.|+|+||+.++.++++++++ ++|||+++||+++++|++|++++|+|+||
T Consensus 80 ~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~-~~~~k~~~Le~l~~l~~~p~~l~~lf~NY 158 (168)
T PF12783_consen 80 KNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNS-SLWQKELALEILRELCKDPQFLVDLFVNY 158 (168)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-cHHHHHHHHHHHHHHHhChhHHHHHHHHc
Confidence 99988889999999999999999999999999999999999999988763 78999999999999999999999999999
Q ss_pred CCCCCCCcHH
Q 046443 472 DCDITCSNVF 481 (1469)
Q Consensus 472 DCd~~~~nlf 481 (1469)
|||.+++|||
T Consensus 159 DCd~~~~nif 168 (168)
T PF12783_consen 159 DCDLNSKNIF 168 (168)
T ss_pred CCCCCCCCCC
Confidence 9999999986
No 12
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.5e-29 Score=284.22 Aligned_cols=152 Identities=39% Similarity=0.634 Sum_probs=147.4
Q ss_pred hhhHhHHhhhccCCChhHHhhhhcCCchhHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHH
Q 046443 599 PQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYY 678 (1469)
Q Consensus 599 p~~iA~fl~~~~~l~k~~igeyl~~~~~~~~~vl~~f~~~fdf~~~~~~~alR~~l~~frlpgE~q~I~ri~e~Fa~~y~ 678 (1469)
...+|+-|+.-.+.-|..++.+||+.++|..-|..+|++.|+|.|+++|.|||.||..|-|-||.|.-+||+-+|+.|||
T Consensus 307 A~rlArrLY~L~gf~~sdVA~~LgknNeFS~lVa~eYL~fF~Fsg~tlD~ALR~Flka~~L~GETqeRERvL~hFS~Ry~ 386 (774)
T KOG0932|consen 307 AARLARRLYRLEGFRKSDVARHLGKNNEFSRLVAEEYLSFFQFSGMTLDQALREFLKALELMGETQERERVLRHFSRRYF 386 (774)
T ss_pred HHHHHHHHHHhhCccHHHHHHHhcccchHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhh
Confidence 35688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCcchHHHHHHHHHHhhhccccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHhhcCccc
Q 046443 679 EQSPQILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICKNEIR 750 (1469)
Q Consensus 679 ~~n~~~~~~~d~~~~l~ysiimLntdlhn~~~k~~mt~~~F~~n~~~~n~g~d~~~~~L~~iy~~I~~~~i~ 750 (1469)
+|||+.|.+.|.|+.|.++|++||||||.+|+-||||.+|||-|+.|.|+|.|||+|+|..+|++|+++.+.
T Consensus 387 ~CNP~~~~S~DgvHtLTCAlmLLNTDLHGhniGKkMtcqdFI~Nl~glndG~dF~kelLKaLy~SIKnekle 458 (774)
T KOG0932|consen 387 QCNPDIFDSEDGVHTLTCALMLLNTDLHGHNIGKKMTCQDFITNLAGLNDGGDFPKELLKALYNSIKNEKLE 458 (774)
T ss_pred ccCccccccccchhHHHHHHHHHccccccccccccccHHHHHHHHhcccccCccHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999554
No 13
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.7e-06 Score=104.08 Aligned_cols=348 Identities=15% Similarity=0.228 Sum_probs=221.9
Q ss_pred hhhhhchhHHHhhc-ccCCHHHHHHHHHHHHHhhCCCCCC--C------------CCCCCCcchhHHHHHHHH-H--Hhh
Q 046443 989 TIQKCHIDSIFTES-KFLQAESLLQLARALIWAAGRPQKG--N------------SSPEDEDTAVFCLELLIA-I--TLN 1050 (1469)
Q Consensus 989 cI~s~~i~~LF~~s-~~L~~esL~~lv~aL~~~s~~~~~~--~------------~~~~~e~~~~F~Le~lv~-v--~l~ 1050 (1469)
|+.....|++|+.. ..|..-+|..|.-+++.+|....-. + .....+......|-++.. + .++
T Consensus 844 ctLiakaDRffedacdeLcLmALgdfcvaiikaSenqlFhsvTaqkdihLaaPgevkstqdrksalhLfRigdaiirilr 923 (1777)
T KOG1846|consen 844 CTLIAKADRFFEDACDELCLMALGDFCVAIIKASENQLFHSVTAQKDIHLAAPGEVKSTQDRKSALHLFRIGDAIIRILR 923 (1777)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHhhhcceeeeeccceeeEeecCcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 55567889999975 7899999999999999988643210 0 001111222233334443 1 222
Q ss_pred cchhhH----HhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCC-Chh----HHHHHHHHHHHHHHhcChHHHH
Q 046443 1051 NRDRIV----LLWQGVYEHIANIVQSTVMPCALVEKAVFGLLRICQRLLP-YKE----NLADELLRSLQLVLKLDARVAD 1121 (1469)
Q Consensus 1051 N~~Ri~----~~W~~v~~hL~~i~~~~~~~~~l~erAv~~L~rl~~rll~-~~e----~l~~~lL~~L~~l~~l~~~v~~ 1121 (1469)
...|.. ..|+.|..|+.+..+-.. --+....|+-++-.+..+++. +.| .+.+.++.||+..+.+.. +..
T Consensus 924 hkaRPLlHqMfcwpLVaaHfVeasaCdk-ErhvSqiAaSaiadilTelLtdwnEpPgfhFNeaLfgPFeramclEl-CdE 1001 (1777)
T KOG1846|consen 924 HKARPLLHQMFCWPLVAAHFVEASACDK-ERHVSQIAASAIADILTELLTDWNEPPGFHFNEALFGPFERAMCLEL-CDE 1001 (1777)
T ss_pred hcccchhHHHHHHhhhhHHHHhHHhhhh-hhHHHHHHHHHHHHHHHHHHhccCCCCCcchhHhhhchHHHHHHHHh-ccH
Confidence 333432 589999999987754211 012233466667776666664 233 578889999999887754 557
Q ss_pred HHHHHHHHHHHHHHhcccCcccCccChHHHHHHHHhhhc-CCc--------------chHHHHHHHHHHH-hcCCCCChh
Q 046443 1122 AYCEQITQEVSRLVKANATHIRSQMGWRTITSLLSITAR-HPE--------------ASEAGFEALLFIM-SDGTHLLPA 1185 (1469)
Q Consensus 1122 ~v~~~Il~~L~~ll~~~~~~i~s~~gW~~If~iL~~~~~-~~~--------------~~~~aFe~L~lIi-~d~~~l~~~ 1185 (1469)
++.+|.+..+.++++.+++.|.| ||+++|+-|..+.. ++. .-.-+|++++... .|...+-..
T Consensus 1002 dtkdQflsSigeLVescadkIgS--GWkPLFgaLeaVgggnksemkaaldedysmgKghacafDVfeafLniDnipVfan 1079 (1777)
T KOG1846|consen 1002 DTKDQFLSSIGELVESCADKIGS--GWKPLFGALEAVGGGNKSEMKAALDEDYSMGKGHACAFDVFEAFLNIDNIPVFAN 1079 (1777)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHHhcCCcHHHHHHHHhcccccccccchhhHHHHHHhccCchHhHHH
Confidence 89999999999999999999999 99999999987652 211 1124788887433 333333334
Q ss_pred hHHHHHHHHHHHHHhhc----------------CchhhHHHHHHHHHhhhHhhhhhhhh-------------------hh
Q 046443 1186 NYVLCIDSARQFAESRV----------------GQAERSVRALELMSGSVDCLARWGRE-------------------AK 1230 (1469)
Q Consensus 1186 nf~~cVd~l~~F~~q~~----------------~~~~~Sl~AI~Ll~~~~~~l~~~~~~-------------------~~ 1230 (1469)
....||-|+.+|..... ...+..+.|++++.++...+.+...- ..
T Consensus 1080 aalecimClmkflkgleevDckeigdcapapgapstdKOGaALdlLpncsqLiakiYkmPhkPifhlghladLprkcldq 1159 (1777)
T KOG1846|consen 1080 AALECIMCLMKFLKGLEEVDCKEIGDCAPAPGAPSTDLCLAALDLLPNCSQLIAKIYKMPHKPIFHLGHLADLPRKCLDQ 1159 (1777)
T ss_pred HHHHHHHHHHHHHhcccccccchhcccCCCCCCCcchhhHHHHHHHHhHHHHHHHHHcCCCchhhhhhhhhcchHHHHhh
Confidence 45678888899986421 11245688999987765444322110 00
Q ss_pred hccChhhh----------hhh--hhhHHhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHH
Q 046443 1231 ESMGEDEV----------AKL--SQDIGEMWLRLVQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDM 1298 (1469)
Q Consensus 1231 ~~~~~~~~----------~~~--~~~~~~lW~pLLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~ 1298 (1469)
....++.. .+. ...-.++|+.++..+...-.+.-|.-...-+..+|+.|.-.....+++..-.-|..-
T Consensus 1160 samdeDgIEsphgpfpvledfdddiagiElfiiflEQicaallncppnhQknlLDlifeLLrDiskkPlGadfGgvamsa 1239 (1777)
T KOG1846|consen 1160 SAMDEDGIESPHGPFPVLEDFDDDIAGIELFIIFLEQICAALLNCPPNHQKNLLDLIFELLRDISKKPLGADFGGVAMSA 1239 (1777)
T ss_pred hhcccCCccCCCCCccccccccccchhHHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccCCCCCCCccchhhH
Confidence 00011100 011 123368999999999988888888888889999999876222233445555677888
Q ss_pred hhhhhhHHHHHHhhcCCcch--hcchHH-HHHHHHHHHHHHHHHHHHHh
Q 046443 1299 VIFTMLDDLLEIAQGHSQKD--YRNMEG-TLILAMKLLSKVFLQLLHEL 1344 (1469)
Q Consensus 1299 VLFPLLd~Ll~~~~~~s~~d--~~~~~E-T~~~al~lLskvFl~~L~~L 1344 (1469)
+|+|.+.....-. ..| +..|.. ...+|+..-|.+...|+...
T Consensus 1240 liLPvmqkWiRRl----dkdesywdmakaifKhaIGaccelVidhiele 1284 (1777)
T KOG1846|consen 1240 LILPVMQKWIRRL----DKDESYWDMAKAIFKHAIGACCELVIDHIELE 1284 (1777)
T ss_pred HHHHHHHHHHHHh----chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999998875421 112 334444 56788888888888887654
No 14
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=98.76 E-value=1.2e-08 Score=96.70 Aligned_cols=72 Identities=19% Similarity=0.437 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCcccCccChHHHHHHHHhhhc--CCcchHHHHHHHHHH
Q 046443 1100 NLADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKANATHIRSQMGWRTITSLLSITAR--HPEASEAGFEALLFI 1175 (1469)
Q Consensus 1100 ~l~~~lL~~L~~l~~l~~~v~~~v~~~Il~~L~~ll~~~~~~i~s~~gW~~If~iL~~~~~--~~~~~~~aFe~L~lI 1175 (1469)
.+|+++|+||+.++...+. .++++.|++|+.+++..++++|+| ||++||++|+.++. +++.+..||+++++|
T Consensus 13 ~fQ~~fL~Pf~~i~~~~~~--~~vre~il~ci~qil~~~~~~i~S--GW~~if~il~~aa~~~~e~lv~~af~~~~~I 86 (86)
T PF09324_consen 13 NFQKDFLKPFEYIMSNNPS--IDVRELILECILQILQSRGENIKS--GWKVIFSILRAAAKDNDESLVRLAFQIVQLI 86 (86)
T ss_pred HHHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHHHHhHHHHHh--ccHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Confidence 6899999999999755543 689999999999999999999999 99999999999987 455689999999864
No 15
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=90.59 E-value=83 Score=45.85 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=75.4
Q ss_pred hhHHhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHH-HhhhhhhHHHHHHhhcCCcchhcc
Q 046443 1243 QDIGEMWLRLVQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFD-MVIFTMLDDLLEIAQGHSQKDYRN 1321 (1469)
Q Consensus 1243 ~~~~~lW~pLLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~-~VLFPLLd~Ll~~~~~~s~~d~~~ 1321 (1469)
-.|..+|-.+-.-+.++++++..+||-.|+.+|-+.-. ... ... +.+.-=|. +.|-|+..-+ +.. .
T Consensus 1129 l~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~-kfl-e~e-EL~~f~FQkefLkPfe~im-~~s---------~ 1195 (1780)
T PLN03076 1129 LVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSM-KFL-ERE-ELANYNFQNEFMKPFVIVM-RKS---------N 1195 (1780)
T ss_pred eehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHH-Hhc-chh-hhhchhHHHHHHHHHHHHH-Hhc---------C
Confidence 36899999899989999888889999999999866432 111 110 11111233 3444555333 211 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHH
Q 046443 1322 MEGTLILAMKLLSKVFLQLLHELSQLTTFCKLWLGVLSRMEKYMKVKVRGKKSEKLQEIVPELLKNT 1388 (1469)
Q Consensus 1322 ~~ET~~~al~lLskvFl~~L~~L~~~~~f~~lWl~iLd~~~~~m~~~~~~~~s~~L~Eav~EsLKN~ 1388 (1469)
-.|.+-+++..+..+...+...+.. =|..|+..+..-... +.+.+.+...+.++.+
T Consensus 1196 ~~eVrE~ILeCv~qmI~s~~~nIkS------GWktIF~VLs~aa~d-----~~e~iV~lAFetl~~I 1251 (1780)
T PLN03076 1196 AVEIRELIIRCVSQMVLSRVNNVKS------GWKSMFMVFTTAAYD-----DHKNIVLLAFEIIEKI 1251 (1780)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhc------CcHHHHHHHHHHHhC-----ccHHHHHHHHHHHHHH
Confidence 2255667788888877777666544 499999988755432 3455666666666543
No 16
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.28 E-value=71 Score=41.60 Aligned_cols=45 Identities=22% Similarity=0.468 Sum_probs=32.9
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhcCCccccccCCCccchHHHHHHHHHHHhh
Q 046443 1371 GKKSEKLQEIVPELLKNTLLIMKTRGVLVQRSALGGDSLWELTWLHVNNIVP 1422 (1469)
Q Consensus 1371 ~~~s~~L~Eav~EsLKN~LlvM~~~gil~~~~~~~~~~lW~~Tw~~i~~~~P 1422 (1469)
|...+.+...|+..++-++--|.+..+.+.. ..-|. .-||-.++|
T Consensus 394 gp~~~~Lt~iV~qalp~ii~lm~D~sl~Vkd-----TaAwt--lgrI~d~l~ 438 (859)
T KOG1241|consen 394 GPEPDKLTPIVIQALPSIINLMSDPSLWVKD-----TAAWT--LGRIADFLP 438 (859)
T ss_pred CCchhhhhHHHhhhhHHHHHHhcCchhhhcc-----hHHHH--HHHHHhhch
Confidence 4566889999999999999999977776652 23453 356666666
No 17
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=83.53 E-value=6.6 Score=44.20 Aligned_cols=105 Identities=14% Similarity=0.214 Sum_probs=72.8
Q ss_pred chhHHHHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046443 352 DVPLFALRLINSAIELGGPAIRRHPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYHHLRTELKLQLEAFFSCV 431 (1469)
Q Consensus 352 ~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~d~l~~~Ll~~~~s~~~~i~~~~lri~~~L~~~~r~~Lk~q~E~fl~~l 431 (1469)
..|.=||+-|..++..+ ..-...+.+...++ .+...+...+.+.+..+...+|.++..|+..++.+++..++.++..+
T Consensus 22 ~~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~-~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~L 99 (228)
T PF12348_consen 22 EERVEALQKLRSLIKGN-APEDFPPDFVECLR-QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPL 99 (228)
T ss_dssp HHHHHHHHHHHHHHHH--B-----HHHHHHHH----HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CccccHHHHHHHHH-HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 36788999999999887 33345678888888 55566666555556778999999999999999999999999999999
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHHHhcChh
Q 046443 432 ILRLAQSRHGASYQQQEVAMEALVDFCRQKT 462 (1469)
Q Consensus 432 ~~~l~~~~~~~~~~~r~l~LE~l~~l~~~p~ 462 (1469)
+.++.+++ ..-++.+.++|..++..-+
T Consensus 100 l~~~~~~~----~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 100 LKKLGDSK----KFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHGGG-------HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHcccc----HHHHHHHHHHHHHHHHHCC
Confidence 98887643 4667788888887777543
No 18
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=81.34 E-value=2.5 Score=31.95 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=23.6
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 046443 1252 LVQALRKVCLDQREDVRNHALLSLQKCLT 1280 (1469)
Q Consensus 1252 LLq~La~lc~d~r~EVR~~AiqtL~r~Ll 1280 (1469)
|+..+.+++.||.++||..|+.+|.++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 45667788899999999999999988754
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.88 E-value=1.6e+02 Score=40.35 Aligned_cols=257 Identities=12% Similarity=0.120 Sum_probs=150.3
Q ss_pred hhhHHHHHHhccCCCCcchHHHHHHHHHHHHhcCCCCCC-CccHHHHHHHHHHHHhcccccccCCcchHHHHHHHHHHHH
Q 046443 93 AYLQPFLDVIRSDETGAPITSIALSSVYKILSLDVIDQN-SINVEEAMHLVVDAVTSCRFEVTDPASEEVVLMKILQVLL 171 (1469)
Q Consensus 93 ~~l~PFl~vi~S~~t~~~iT~~AL~sl~kfl~~~~i~~~-s~~~~~a~~~i~~avt~crfe~td~~~De~VllkILqvL~ 171 (1469)
+++.=|...+..+ +.+|-..|+.++.-|+.+.=.+++ -.....-+..++..+..+ -+..|+...--+|.+|-
T Consensus 159 ~l~~lf~q~~~d~--s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~-----i~~~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 159 DLLRLFSQTMTDP--SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEV-----IQDGDDDAAKSALEALI 231 (1075)
T ss_pred HHHHHHHHhccCC--cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhh-----hhccchHHHHHHHHHHH
Confidence 4555566667766 555888889999888876322222 123444555666666554 34455556667888888
Q ss_pred HHHccCCccccchhHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhcccccccccccCCC
Q 046443 172 ACMKSKASIVLSNQHVCTIVNTCFRIVHQAGNKGELSQRIARHTMHELVRCIFSHLPDVDNSEHALVNGVTAVKQEIGGL 251 (1469)
Q Consensus 172 ~~~~~~~g~~L~~~~v~~~l~~c~~l~~~~~~~se~lr~tAe~tl~~~v~~iF~rl~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1469)
.++.+. +. +-...+.++++.|+.++.+. .+.+-.|-.|=.-|......-=...+.
T Consensus 232 El~e~~-pk-~l~~~l~~ii~~~l~Ia~n~-~l~~~~R~~ALe~ivs~~e~Ap~~~k~---------------------- 286 (1075)
T KOG2171|consen 232 ELLESE-PK-LLRPHLSQIIQFSLEIAKNK-ELENSIRHLALEFLVSLSEYAPAMCKK---------------------- 286 (1075)
T ss_pred HHHhhc-hH-HHHHHHHHHHHHHHHHhhcc-cccHHHHHHHHHHHHHHHHhhHHHhhh----------------------
Confidence 888874 44 67788999999999999885 788888887765554333220000000
Q ss_pred CCCcccCCccccCCCCCCCccccccccccCCCCcccccccccccCCCCCCCCCcccccccCCCCCChhHHHHHHHHHHhc
Q 046443 252 DTDYAFGGKQLENGNGGSEYEGQQSFANLVSPSGVVATMMEENMNGSSTGKDSVSYDLHLMTEPYGVPCMVEIFHFLCSL 331 (1469)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pyg~~~~~~lf~~L~sL 331 (1469)
..+||.+-+.-++...|-+
T Consensus 287 -------------------------------------------------------------~~~~~~~lv~~~l~~mte~ 305 (1075)
T KOG2171|consen 287 -------------------------------------------------------------LALLGHTLVPVLLAMMTEE 305 (1075)
T ss_pred -------------------------------------------------------------chhhhccHHHHHHHhcCCc
Confidence 0112222112222222221
Q ss_pred cCCCCCCCCCCCCCcccc--ccchhHHHHHHHHH-HHHhcCcccCCchHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 046443 332 LNISEHMTMGPRSNTIAL--DEDVPLFALRLINS-AIELGGPAIRRHPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSI 408 (1469)
Q Consensus 332 i~~~~~~~~~~~~n~~~~--~~~~~~~~L~Li~~-~le~~g~~~~~~p~l~~li~d~l~~~Ll~~~~s~~~~i~~~~lri 408 (1469)
.+ |.+|.+. ....- .++..++|.+.|.. ++..+|..+. | .+++++-+.+.|.+..-=.++|..
T Consensus 306 ~~--D~ew~~~--d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~--p--------~~~~~l~~~l~S~~w~~R~AaL~A 371 (1075)
T KOG2171|consen 306 ED--DDEWSNE--DDLDEDDEETPYRAAEQALDRLALHLGGKQVL--P--------PLFEALEAMLQSTEWKERHAALLA 371 (1075)
T ss_pred cc--chhhccc--cccccccccCcHHHHHHHHHHHHhcCChhheh--H--------HHHHHHHHHhcCCCHHHHHHHHHH
Confidence 11 0111000 00000 01234555555543 3455554432 2 344555566677776666677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcC
Q 046443 409 VLNLYHHLRTELKLQLEAFFSCVILRLAQSRHGASYQQQEVAMEALVDFCRQ 460 (1469)
Q Consensus 409 ~~~L~~~~r~~Lk~q~E~fl~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~~ 460 (1469)
+..+..-..++++.++.-.+..++.-+-+ +.+--|..|+.++.++..+
T Consensus 372 ls~i~EGc~~~m~~~l~~Il~~Vl~~l~D----phprVr~AA~naigQ~std 419 (1075)
T KOG2171|consen 372 LSVIAEGCSDVMIGNLPKILPIVLNGLND----PHPRVRYAALNAIGQMSTD 419 (1075)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHhhcCC----CCHHHHHHHHHHHHhhhhh
Confidence 88899999999999998888877766544 2356678888888887776
No 20
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=75.31 E-value=69 Score=43.98 Aligned_cols=52 Identities=21% Similarity=0.471 Sum_probs=39.2
Q ss_pred CCcccccccccccCCCCCCCCCCHHHHHHHHHHHhhhhh-hch-hHHHhhcccCCHH
Q 046443 954 SGLMGRFSQLLSLDTEEPRSQPTEQQLAAHQRTLQTIQK-CHI-DSIFTESKFLQAE 1008 (1469)
Q Consensus 954 ~gllS~fssyls~~s~e~~~eps~eei~~~~~a~~cI~s-~~i-~~LF~~s~~L~~e 1008 (1469)
+|+.+.|.+|+++ +.+.+ |.++++.....+++||+. ..| ..+|.++..+..+
T Consensus 670 ~~~l~~~k~~~~~--d~~~~-~~q~~v~~s~~n~~~i~~~~~i~~~~~~~~~~~~~~ 723 (1024)
T COG5307 670 SAVLSVFKAILSS--DLPSP-PLQKEVDISKKNVDIIKSESKISNVLFKNSEGLSPD 723 (1024)
T ss_pred chHHHHHHHHHhc--cCCCC-CcHHhhhHHhhhhhhhhhhhHHHhhcccchhhcccc
Confidence 4677888888763 33333 889999999999999988 666 5677777766665
No 21
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=69.20 E-value=3.2e+02 Score=34.62 Aligned_cols=136 Identities=17% Similarity=0.105 Sum_probs=72.0
Q ss_pred cccCCHHHHHHHHHHHHHhhCCCCCCCCCCCCCcchhHHHHHHHHHHhhcchhhHHhHHHHHHHHHHHHh--ccCC-Chh
Q 046443 1002 SKFLQAESLLQLARALIWAAGRPQKGNSSPEDEDTAVFCLELLIAITLNNRDRIVLLWQGVYEHIANIVQ--STVM-PCA 1078 (1469)
Q Consensus 1002 s~~L~~esL~~lv~aL~~~s~~~~~~~~~~~~e~~~~F~Le~lv~v~l~N~~Ri~~~W~~v~~hL~~i~~--~~~~-~~~ 1078 (1469)
-..+|.++|..+|..||..-.-. ... --.++ ++.|.=+ ...+......|..++. +... ...
T Consensus 207 y~~iP~~sl~~~i~vLCsi~~~~------~l~----~~~w~-----~m~nL~~-S~~g~~~i~~L~~iL~~~~~~~~~~~ 270 (464)
T PF11864_consen 207 YGDIPSESLSPCIEVLCSIVNSV------SLC----KPSWR-----TMRNLLK-SHLGHSAIRTLCDILRSPDPQNKRDI 270 (464)
T ss_pred cCcCChHHHHHHHHHHhhHhccc------ccc----hhHHH-----HHHHHHc-CccHHHHHHHHHHHHcccCccccccH
Confidence 46789999999999999985321 000 11233 3333322 2345566667777773 2211 111
Q ss_pred HHHH-HHHHHHHHHHHhCCCh--hH--HH-HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH-hcccCcccCccChHHH
Q 046443 1079 LVEK-AVFGLLRICQRLLPYK--EN--LA-DELLRSLQLVLKLDARVADAYCEQITQEVSRLV-KANATHIRSQMGWRTI 1151 (1469)
Q Consensus 1079 l~er-Av~~L~rl~~rll~~~--e~--l~-~~lL~~L~~l~~l~~~v~~~v~~~Il~~L~~ll-~~~~~~i~s~~gW~~I 1151 (1469)
-+-| ||+.+..+.-.. ..+ .. +. ..++.+|...++.+.. .+.--|+..+..++ ...+..+. ...|..+
T Consensus 271 ~~lRGAv~~l~~ll~~~-~~~~~~~l~~~~~~vl~sl~~al~~~~~---~v~~eIl~~i~~ll~~~~~~~l~-~~~W~~~ 345 (464)
T PF11864_consen 271 NVLRGAVFFLRMLLWGS-GEQGYPSLPFSPSSVLPSLLNALKSNSP---RVDYEILLLINRLLDGKYGRELS-EEDWDII 345 (464)
T ss_pred HHHhhHHHHHHHHHhcc-ccCCcceecccHHHHHHHHHHHHhCCCC---eehHHHHHHHHHHHhHhhhhhhc-ccCchHH
Confidence 2234 333333333221 101 11 11 1356666666654442 23445667777788 66666543 4599999
Q ss_pred HHHHHhh
Q 046443 1152 TSLLSIT 1158 (1469)
Q Consensus 1152 f~iL~~~ 1158 (1469)
+.++...
T Consensus 346 ~~i~~~~ 352 (464)
T PF11864_consen 346 LDIIEEI 352 (464)
T ss_pred HHHHHHH
Confidence 9999754
No 22
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=59.67 E-value=2e+02 Score=32.13 Aligned_cols=104 Identities=11% Similarity=0.120 Sum_probs=60.9
Q ss_pred CCcchHHHHHHHHHHHHhcCCCCCC-CccHHHHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHHccCCccccchh
Q 046443 107 TGAPITSIALSSVYKILSLDVIDQN-SINVEEAMHLVVDAVTSCRFEVTDPASEEVVLMKILQVLLACMKSKASIVLSNQ 185 (1469)
Q Consensus 107 t~~~iT~~AL~sl~kfl~~~~i~~~-s~~~~~a~~~i~~avt~crfe~td~~~De~VllkILqvL~~~~~~~~g~~L~~~ 185 (1469)
.+=..---||.-|.+++..+ ++.. .+.+...+++++.++..|- +|..+= |.-.-++++..+... .|.. -+.
T Consensus 19 ~~W~~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~~~~~~i~~~l---~d~Rs~--v~~~A~~~l~~l~~~-l~~~-~~~ 90 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGN-APEDFPPDFVECLRQLLDAIIKQL---SDLRSK--VSKTACQLLSDLARQ-LGSH-FEP 90 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH--B-----HHHHHHHH---HHHHH-S----HH-----HHHHHHHHHHHHHHH-HGGG-GHH
T ss_pred cCHHHHHHHHHHHHHHHHcC-CccccHHHHHHHHHHhHHHHHHHH---hhhHHH--HHHHHHHHHHHHHHH-HhHh-HHH
Confidence 34444556899999999998 4443 3456667777778887763 344442 666677777777766 3443 334
Q ss_pred HHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHH
Q 046443 186 HVCTIVNTCFRIVHQAGNKGELSQRIARHTMHELVR 221 (1469)
Q Consensus 186 ~v~~~l~~c~~l~~~~~~~se~lr~tAe~tl~~~v~ 221 (1469)
.+-.++..-+..+.. .+.+++.+|..||..|+.
T Consensus 91 ~~~~~l~~Ll~~~~~---~~~~i~~~a~~~L~~i~~ 123 (228)
T PF12348_consen 91 YADILLPPLLKKLGD---SKKFIREAANNALDAIIE 123 (228)
T ss_dssp HHHHHHHHHHHGGG------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcc---ccHHHHHHHHHHHHHHHH
Confidence 466666666666543 457899999999988754
No 23
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=59.53 E-value=85 Score=34.40 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=67.7
Q ss_pred ccCCCCCCCChhhhhHHHHHHhccCCCCcchHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHhcccccccCCcchH
Q 046443 81 SWQHPWHTINPAAYLQPFLDVIRSDETGAPITSIALSSVYKILSLDVIDQNSINVEEAMHLVVDAVTSCRFEVTDPASEE 160 (1469)
Q Consensus 81 ~~~~~~~~~d~~~~l~PFl~vi~S~~t~~~iT~~AL~sl~kfl~~~~i~~~s~~~~~a~~~i~~avt~crfe~td~~~De 160 (1469)
.|..++..+|-..||-=|++..+ ||.-|-.=+|...+..++..+ ....+...+.+++-.+..+- .+.|.
T Consensus 26 ~W~~~~e~Ldy~~~Lpif~dGL~--Et~~Py~flA~~g~~dll~~~----~~~kilPvlPqLI~plk~AL-----~tr~~ 94 (183)
T PF10274_consen 26 QWKVDPEKLDYHHYLPIFFDGLR--ETEHPYRFLARQGIKDLLERG----GGEKILPVLPQLIIPLKRAL-----NTRDP 94 (183)
T ss_pred EEecChhhcchhhHHHHHHhhhh--ccCccHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHH-----hCCCH
Confidence 77778999999999988999998 558899999999999999872 23345567777777776652 34455
Q ss_pred HHHHHHHHHHHHHHccC
Q 046443 161 VVLMKILQVLLACMKSK 177 (1469)
Q Consensus 161 ~VllkILqvL~~~~~~~ 177 (1469)
.|.-..|++|..++.+.
T Consensus 95 ~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 95 EVFCATLKALQQLVTSS 111 (183)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 68899999999988773
No 24
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=56.02 E-value=3e+02 Score=32.11 Aligned_cols=138 Identities=14% Similarity=0.192 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHhcccCcccCccChHHHHHHHHhhh--cCCcchHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHH
Q 046443 1121 DAYCEQITQEVSRLVKANATHIRSQMGWRTITSLLSITA--RHPEASEAGFEALLFIMSDGTHLLPANYVLCIDSARQFA 1198 (1469)
Q Consensus 1121 ~~v~~~Il~~L~~ll~~~~~~i~s~~gW~~If~iL~~~~--~~~~~~~~aFe~L~lIi~d~~~l~~~nf~~cVd~l~~F~ 1198 (1469)
...|..+.+-+..++..+...+++ .|=..|..++.... ++|.-...+|+.+..|+..+.. ........|++..|-
T Consensus 96 q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--~~~~e~lFd~~~cYF 172 (262)
T PF14500_consen 96 QSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--SEFAEDLFDVFSCYF 172 (262)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHhhhee
Confidence 345666666666677776666643 35566777776554 6777888999999999888752 223333344443322
Q ss_pred -----HhhcCchhhHHHHHHHHHhhhHhhhhhhhhhhhccChhhhhhhhhhHHhHHHH-HHHHHHHhhcCCcHHHHHHHH
Q 046443 1199 -----ESRVGQAERSVRALELMSGSVDCLARWGREAKESMGEDEVAKLSQDIGEMWLR-LVQALRKVCLDQREDVRNHAL 1272 (1469)
Q Consensus 1199 -----~q~~~~~~~Sl~AI~Ll~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lW~p-LLq~La~lc~d~r~EVR~~Ai 1272 (1469)
-.+.+. ..+++-+|-..+..++.. +.....+=+| |+..|. . .-+.|+.-++
T Consensus 173 PI~F~pp~~dp--~~IT~edLk~~L~~cl~s-----------------~~~fa~~~~p~LleKL~---s-~~~~~K~D~L 229 (262)
T PF14500_consen 173 PITFRPPPNDP--YGITREDLKRALRNCLSS-----------------TPLFAPFAFPLLLEKLD---S-TSPSVKLDSL 229 (262)
T ss_pred eeeeeCCCCCC--CCCCHHHHHHHHHHHhcC-----------------cHhhHHHHHHHHHHHHc---C-CCcHHHHHHH
Confidence 111222 123344443333343321 1112223344 444444 2 2455999999
Q ss_pred HHHHHhhccccCC
Q 046443 1273 LSLQKCLTGVDGI 1285 (1469)
Q Consensus 1273 qtL~r~Ll~~~g~ 1285 (1469)
++|..++. .||.
T Consensus 230 ~tL~~c~~-~y~~ 241 (262)
T PF14500_consen 230 QTLKACIE-NYGA 241 (262)
T ss_pred HHHHHHHH-HCCH
Confidence 99999999 7764
No 25
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=53.98 E-value=4.4e+02 Score=32.39 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=72.3
Q ss_pred cCCchHHHHHHHHHHHHHHHH-hhcccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Q 046443 372 IRRHPRLLSLIQDELFRNLMQ-FGLSMSPLILSMVCSIVLNLYH---HLRTELKLQLEAFFSCVILRLAQSRHGASYQQQ 447 (1469)
Q Consensus 372 ~~~~p~l~~li~d~l~~~Ll~-~~~s~~~~i~~~~lri~~~L~~---~~r~~Lk~q~E~fl~~l~~~l~~~~~~~~~~~r 447 (1469)
|.+||.+.+-+.-..+-.=++ .+.+++..+-+..+|++..++. .++..++..+..|+- ..+..+. .....|
T Consensus 11 ~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii---~SL~~~~--~~~~ER 85 (371)
T PF14664_consen 11 LKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFII---RSLDRDN--KNDVER 85 (371)
T ss_pred HHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhH---hhhcccC--CChHHH
Confidence 456666655544444433333 4567778888899999988876 566667777777643 3333332 235678
Q ss_pred HHHHHHHHHHhcChhHHHHHHHhcCCCCCCCcHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHH
Q 046443 448 EVAMEALVDFCRQKTFMVEMYANLDCDITCSNVFEDLANLLSKSAFPVNCPLSAMHILALDGLIAVI 514 (1469)
Q Consensus 448 ~l~LE~l~~l~~~p~~~~~ly~NYDCd~~~~nlfe~l~~~L~k~a~~~~~~~~~~~~laLe~ll~ii 514 (1469)
+-||..++.|...++- ...+=..+++.+.-.+-. +-..+..+|++.|+.+.
T Consensus 86 ~QALkliR~~l~~~~~-------------~~~~~~~vvralvaiae~---~~D~lr~~cletL~El~ 136 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKG-------------PKEIPRGVVRALVAIAEH---EDDRLRRICLETLCELA 136 (371)
T ss_pred HHHHHHHHHHHHhcCC-------------cccCCHHHHHHHHHHHhC---CchHHHHHHHHHHHHHH
Confidence 9999998887665321 112233444444433322 23356778888876543
No 26
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=51.80 E-value=12 Score=35.68 Aligned_cols=31 Identities=19% Similarity=0.489 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCCchhccHHHHHHHHHHH
Q 046443 875 MATVSVFTIANRYGDFIRTGWRNILDCILRL 905 (1469)
Q Consensus 875 la~~~Lf~ia~~~G~~L~~sW~~Il~~i~~L 905 (1469)
+.++++..+....|+.++.||+.|++++...
T Consensus 37 ~il~ci~qil~~~~~~i~SGW~~if~il~~a 67 (86)
T PF09324_consen 37 LILECILQILQSRGENIKSGWKVIFSILRAA 67 (86)
T ss_pred HHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 5677888889999999999999999999754
No 27
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=40.07 E-value=9.5e+02 Score=31.08 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhh
Q 046443 1248 MWLRLVQALRKVCLDQREDVRNHALLSLQKCL 1279 (1469)
Q Consensus 1248 lW~pLLq~La~lc~d~r~EVR~~AiqtL~r~L 1279 (1469)
+---++-.|.+.-.|..+|||+.|+.+|.+.=
T Consensus 292 ~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~ 323 (569)
T KOG1242|consen 292 CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFG 323 (569)
T ss_pred HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 33448888889999999999999999998753
No 28
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=34.27 E-value=86 Score=37.07 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHHHHhhccccCCC-CChhhH--HHHHHHhhhhhhHHHHHHhhcCCcchhcchHHHHHHHHHHHHHHHHH
Q 046443 1263 QREDVRNHALLSLQKCLTGVDGIH-LPHGLW--LQCFDMVIFTMLDDLLEIAQGHSQKDYRNMEGTLILAMKLLSKVFLQ 1339 (1469)
Q Consensus 1263 ~r~EVR~~AiqtL~r~Ll~~~g~~-l~~~~W--~~~f~~VLFPLLd~Ll~~~~~~s~~d~~~~~ET~~~al~lLskvFl~ 1339 (1469)
...+||..|++.+++++. .||.. ++...+ ......-+..++.+.++. ...|.+..|..|+||+++.
T Consensus 76 ~~~~v~~~al~~l~Dll~-~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~----------~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 76 DDEEVKITALKALFDLLL-THGIDIFDSESDNDESVDSKSLLKILTKFLDS----------ENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred CCHHHHHHHHHHHHHHHH-HcCchhccchhccCccchHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHhc
Confidence 389999999999999999 88854 333333 223333444444444331 1346788899999998875
Q ss_pred H
Q 046443 1340 L 1340 (1469)
Q Consensus 1340 ~ 1340 (1469)
-
T Consensus 145 ~ 145 (298)
T PF12719_consen 145 G 145 (298)
T ss_pred C
Confidence 3
No 29
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=34.19 E-value=4.9e+02 Score=27.59 Aligned_cols=106 Identities=14% Similarity=0.189 Sum_probs=57.1
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHhhccccC--CCCChhhHHHHHHHhhhhhhHHHHHHh-hcCCcchhc-chHHHHHHHHH
Q 046443 1256 LRKVCLDQREDVRNHALLSLQKCLTGVDG--IHLPHGLWLQCFDMVIFTMLDDLLEIA-QGHSQKDYR-NMEGTLILAMK 1331 (1469)
Q Consensus 1256 La~lc~d~r~EVR~~AiqtL~r~Ll~~~g--~~l~~~~W~~~f~~VLFPLLd~Ll~~~-~~~s~~d~~-~~~ET~~~al~ 1331 (1469)
+..+....+--=|+.|++.|.+++. ... ..++...|..+|+ -||-.+..=.+.- ...+..... .-.++|..-+.
T Consensus 9 ~~~~L~S~k~keR~~al~~L~~il~-~~~~~~~l~~k~~~~ife-aL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a 86 (155)
T PF11640_consen 9 ILRLLSSDKIKERNKALEDLRHILS-SPPRVDSLNDKQWHSIFE-ALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCA 86 (155)
T ss_pred HHHHHhccccchHHHHHHHHHHHHc-CccccccCCcchHHHHHH-HHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHH
Confidence 3334445566779999999999998 332 6788889999999 4555553322111 001111111 13466666555
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHh
Q 046443 1332 LLSKVFLQLLHELSQLTTFCKLWLGVLSRMEKYMKV 1367 (1469)
Q Consensus 1332 lLskvFl~~L~~L~~~~~f~~lWl~iLd~~~~~m~~ 1367 (1469)
.+-+.|...-..-..-.+ -..+++++-..|..
T Consensus 87 ~~lR~~ve~~~~~~k~kt----~~~Ll~hI~~~l~~ 118 (155)
T PF11640_consen 87 SALRLFVEKSNSRLKRKT----VKALLDHITDLLPD 118 (155)
T ss_pred HHHHHHHHHHHhhcccch----HHHHHHHHHHHhhC
Confidence 555555544433222223 34444444445544
No 30
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=33.36 E-value=1.6e+02 Score=32.39 Aligned_cols=89 Identities=15% Similarity=0.231 Sum_probs=66.5
Q ss_pred hhhhHHHHHHhccCCCCcchHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHhcccccccCCcchHHHHHHHHHHHH
Q 046443 92 AAYLQPFLDVIRSDETGAPITSIALSSVYKILSLDVIDQNSINVEEAMHLVVDAVTSCRFEVTDPASEEVVLMKILQVLL 171 (1469)
Q Consensus 92 ~~~l~PFl~vi~S~~t~~~iT~~AL~sl~kfl~~~~i~~~s~~~~~a~~~i~~avt~crfe~td~~~De~VllkILqvL~ 171 (1469)
-.|+...|..|-++ ++++--+|+.-|.-.+.+|+++|. .++.-++.- .||+.. .|-=+-.+++.
T Consensus 7 Qryl~~Il~~~~~~--~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL-------~ts~~~--~ir~~A~~~l~ 70 (187)
T PF12830_consen 7 QRYLKNILELCLSS--DDSVRLAALQVLELILRQGLVNPK-----QCVPTLIAL-------ETSPNP--SIRSRAYQLLK 70 (187)
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhh-------hCCCCh--HHHHHHHHHHH
Confidence 35899999999988 889999999999999999999995 455555543 255444 37777888888
Q ss_pred HHHccCCccccchhHHHHHHHHHHhhh
Q 046443 172 ACMKSKASIVLSNQHVCTIVNTCFRIV 198 (1469)
Q Consensus 172 ~~~~~~~g~~L~~~~v~~~l~~c~~l~ 198 (1469)
.+.... +.++. ....+-++.+|...
T Consensus 71 ~l~eK~-~s~v~-~~~~~gi~~af~~~ 95 (187)
T PF12830_consen 71 ELHEKH-ESLVE-SRYSEGIRLAFDYQ 95 (187)
T ss_pred HHHHHh-HHHHH-HHHHHHHHHHHHHH
Confidence 877664 44343 35667788888773
No 31
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=29.27 E-value=5.2e+02 Score=24.82 Aligned_cols=110 Identities=16% Similarity=0.100 Sum_probs=66.3
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHHHHhhcCCcchhcchHHHHHHHHH
Q 046443 1252 LVQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDYRNMEGTLILAMK 1331 (1469)
Q Consensus 1252 LLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d~~~~~ET~~~al~ 1331 (1469)
++..|.+...++..++|..|+.+|...-. ..+..+..++....+|.+-+++.. .+ .+.+..++.
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~------~~~~~~~~~~~~~~i~~l~~~l~~------~~----~~v~~~a~~ 71 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSA------GNNDNIQAVVEAGGLPALVQLLKS------ED----EEVVKAALW 71 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhc------CCHHHHHHHHHCCChHHHHHHHhC------CC----HHHHHHHHH
Confidence 45556666678889999999999998665 236677888886777888777542 11 244555666
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHH-HHHHHHHHHHHhhccCCcchhHHHHHHHHHHHH
Q 046443 1332 LLSKVFLQLLHELSQLTTFCKLWL-GVLSRMEKYMKVKVRGKKSEKLQEIVPELLKNT 1388 (1469)
Q Consensus 1332 lLskvFl~~L~~L~~~~~f~~lWl-~iLd~~~~~m~~~~~~~~s~~L~Eav~EsLKN~ 1388 (1469)
.|+.+-...- ..-...+. +++..+.++++. .+....+.+...|.|+
T Consensus 72 ~L~~l~~~~~------~~~~~~~~~g~l~~l~~~l~~-----~~~~~~~~a~~~l~~l 118 (120)
T cd00020 72 ALRNLAAGPE------DNKLIVLEAGGVPKLVNLLDS-----SNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHccCcH------HHHHHHHHCCChHHHHHHHhc-----CCHHHHHHHHHHHHHh
Confidence 6665432110 11122342 256666666654 2345666666666654
No 32
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=28.83 E-value=3e+02 Score=32.79 Aligned_cols=128 Identities=16% Similarity=0.210 Sum_probs=75.4
Q ss_pred cchhHHHHHHHHHHHHhcCcccCCchHHHHHHH---HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046443 351 EDVPLFALRLINSAIELGGPAIRRHPRLLSLIQ---DELFRNLMQFGLSMSPLILSMVCSIVLNLYHHLRTELKLQLEAF 427 (1469)
Q Consensus 351 ~~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~---d~l~~~Ll~~~~s~~~~i~~~~lri~~~L~~~~r~~Lk~q~E~f 427 (1469)
+++..+.|.+|.-.+..... ..+-+...-+ ...+..+++.+.+++..+-..+++++..|+..-...-..-.+-+
T Consensus 71 ~d~v~yvL~li~dll~~~~~---~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~ 147 (312)
T PF03224_consen 71 DDTVQYVLTLIDDLLSDDPS---RVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEA 147 (312)
T ss_dssp HHHHHHHHHHHHHHHH-SSS---SHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHH---HHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHH
Confidence 46788999999998887762 2344444433 34677888876667788888899999998875443333211223
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcChhHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 046443 428 FSCVILRLAQSRHGASYQQQEVAMEALVDFCRQKTFMVEMYANLDCDITCSNVFEDLANLLS 489 (1469)
Q Consensus 428 l~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~~p~~~~~ly~NYDCd~~~~nlfe~l~~~L~ 489 (1469)
+..++..+.....+...+-+..++.+|..+.+.+.+=.-++. .+....++..|.
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--------~~~v~~l~~iL~ 201 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--------SNGVSPLFDILR 201 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--------cCcHHHHHHHHH
Confidence 344443333221111234458999999999999887554443 566667777664
No 33
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.86 E-value=1.4e+03 Score=30.07 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=54.0
Q ss_pred HHHHHHHHh----cCCCCChhhHHHHHHHHHHHHHh--h--c------CchhhHHHHHHHHHhhhHhhhhhhhhhhhccC
Q 046443 1169 FEALLFIMS----DGTHLLPANYVLCIDSARQFAES--R--V------GQAERSVRALELMSGSVDCLARWGREAKESMG 1234 (1469)
Q Consensus 1169 Fe~L~lIi~----d~~~l~~~nf~~cVd~l~~F~~q--~--~------~~~~~Sl~AI~Ll~~~~~~l~~~~~~~~~~~~ 1234 (1469)
+||+..|.+ .|+...+.-|..|++.+.+-.++ + . ..-+.-+.|++|+.+++..+....
T Consensus 583 LEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~i-------- 654 (885)
T KOG2023|consen 583 LECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHI-------- 654 (885)
T ss_pred HHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhch--------
Confidence 466655543 23555667788888777644322 1 0 011344568888877665443211
Q ss_pred hhhhhhhhhhHHhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 046443 1235 EDEVAKLSQDIGEMWLRLVQALRKVCLDQREDVRNHALLSLQKC 1278 (1469)
Q Consensus 1235 ~~~~~~~~~~~~~lW~pLLq~La~lc~d~r~EVR~~AiqtL~r~ 1278 (1469)
+++- . ... |++-|..++.|+-+|||++|...|-..
T Consensus 655 -e~Lv--a--~sn----l~~lll~C~~D~~peVRQS~FALLGDl 689 (885)
T KOG2023|consen 655 -EPLV--A--QSN----LLDLLLQCLQDEVPEVRQSAFALLGDL 689 (885)
T ss_pred -HHHh--h--hcc----HHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 1110 0 011 666777788899999999998766553
No 34
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=23.89 E-value=82 Score=25.85 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=21.8
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHH
Q 046443 1251 RLVQALRKVCLDQREDVRNHALLSL 1275 (1469)
Q Consensus 1251 pLLq~La~lc~d~r~EVR~~AiqtL 1275 (1469)
.+...+.+-+.|+.+.||..|++.+
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 5778888889999999999999864
No 35
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=23.12 E-value=3.8e+02 Score=37.24 Aligned_cols=55 Identities=27% Similarity=0.390 Sum_probs=42.2
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHHH
Q 046443 1252 LVQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLE 1309 (1469)
Q Consensus 1252 LLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~ 1309 (1469)
++==+.++..|+-.+||-.|+.||-++|... ..+++.. ..+|-+-|||.|..|+.
T Consensus 463 VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~V--r~~~~~d-aniF~eYlfP~L~~l~~ 517 (1431)
T KOG1240|consen 463 VLPYFVHLLMDSEADVRATALETLTELLALV--RDIPPSD-ANIFPEYLFPHLNHLLN 517 (1431)
T ss_pred hHHHHHHHhcCchHHHHHHHHHHHHHHHhhc--cCCCccc-chhhHhhhhhhhHhhhc
Confidence 3334556678999999999999999998722 2344332 67899999999999965
No 36
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=23.06 E-value=6.2e+02 Score=31.08 Aligned_cols=182 Identities=17% Similarity=0.220 Sum_probs=92.1
Q ss_pred HHHHHHhCCCh---hHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCcccCccChHHHHHHHHhhhcCCcc
Q 046443 1088 LRICQRLLPYK---ENLADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKANATHIRSQMGWRTITSLLSITARHPEA 1164 (1469)
Q Consensus 1088 ~rl~~rll~~~---e~l~~~lL~~L~~l~~l~~~v~~~v~~~Il~~L~~ll~~~~~~i~s~~gW~~If~iL~~~~~~~~~ 1164 (1469)
++++++++..+ ..+...+.+++-.+.... .+.++...+++|.++.-.+.+-+....|-+++...+.-. .. +.
T Consensus 89 LkliR~~l~~~~~~~~~~~~vvralvaiae~~---~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~-~~-~~ 163 (371)
T PF14664_consen 89 LKLIRAFLEIKKGPKEIPRGVVRALVAIAEHE---DDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDG-SF-SI 163 (371)
T ss_pred HHHHHHHHHhcCCcccCCHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhc-cH-hH
Confidence 55666665542 234455666666555443 356788888888888877777665556777776665431 11 13
Q ss_pred hHHHHHHHHHHHhcCCC---CCh-hhHHHHHHHHHHHH--Hhhc----CchhhHHHHHHHHHhhhHhhhhhhhhhhhccC
Q 046443 1165 SEAGFEALLFIMSDGTH---LLP-ANYVLCIDSARQFA--ESRV----GQAERSVRALELMSGSVDCLARWGREAKESMG 1234 (1469)
Q Consensus 1165 ~~~aFe~L~lIi~d~~~---l~~-~nf~~cVd~l~~F~--~q~~----~~~~~Sl~AI~Ll~~~~~~l~~~~~~~~~~~~ 1234 (1469)
+.....++=.+++.... +-+ -++...+.-..++. ..+. +..+.|.++|.. .+..|..-..-.
T Consensus 164 ~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~------~LrsW~GLl~l~-- 235 (371)
T PF14664_consen 164 SESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAIST------LLRSWPGLLYLS-- 235 (371)
T ss_pred HHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHH------HHhcCCceeeee--
Confidence 33344444445554321 122 23333332222221 0000 011223333332 123343211000
Q ss_pred hhhhhhhhhhHHhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhh
Q 046443 1235 EDEVAKLSQDIGEMWLRLVQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVI 1300 (1469)
Q Consensus 1235 ~~~~~~~~~~~~~lW~pLLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VL 1300 (1469)
.++ +.-++.|...-.-|.++||+.-+..||.+|. ++...|..-|....
T Consensus 236 ~~~------------~~~lksLv~~L~~p~~~ir~~Ildll~dllr------ik~p~w~~~~~~~~ 283 (371)
T PF14664_consen 236 MND------------FRGLKSLVDSLRLPNPEIRKAILDLLFDLLR------IKPPSWTESFLAGR 283 (371)
T ss_pred cCC------------chHHHHHHHHHcCCCHHHHHHHHHHHHHHHC------CCCCCcccchhhcc
Confidence 000 0123333333345899999999999999998 55557777666444
No 37
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=22.85 E-value=1.1e+02 Score=25.98 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 046443 1250 LRLVQALRKVCLDQREDVRNHALLSLQKC 1278 (1469)
Q Consensus 1250 ~pLLq~La~lc~d~r~EVR~~AiqtL~r~ 1278 (1469)
-.++..|..+-.|+..+||..|+.+|-++
T Consensus 27 ~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 27 PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 45666677777899999999999988653
No 38
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=22.20 E-value=8.3e+02 Score=25.57 Aligned_cols=64 Identities=8% Similarity=0.163 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcC
Q 046443 397 MSPLILSMVCSIVLNLYHHLRTELKLQLE--AFFSCVILRLAQSRHGASYQQQEVAMEALVDFCRQ 460 (1469)
Q Consensus 397 ~~~~i~~~~lri~~~L~~~~r~~Lk~q~E--~fl~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~~ 460 (1469)
.++.+...+|.++=.++...+.+...|+- -|+..++.+++..+...+..-|.-+|+++..|...
T Consensus 51 ~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 51 KNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 35666666788888899888888777663 57877333444433334567788899999887653
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=21.78 E-value=2.1e+03 Score=29.27 Aligned_cols=124 Identities=10% Similarity=0.148 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046443 355 LFALRLINSAIELGGPAIRRHPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYHHLRTELKLQLEAFFSCVILR 434 (1469)
Q Consensus 355 ~~~L~Li~~~le~~g~~~~~~p~l~~li~d~l~~~Ll~~~~s~~~~i~~~~lri~~~L~~~~r~~Lk~q~E~fl~~l~~~ 434 (1469)
...|+-+..++...... .|.++..+-..+-+.|+.+ .+..+-+=-+++|.+..+.......+..++..||-.
T Consensus 271 AVVl~Aik~il~l~~~~---~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~---- 342 (746)
T PTZ00429 271 AVVMGAIKVVANLASRC---SQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVR---- 342 (746)
T ss_pred HHHHHHHHHHHHhcCcC---CHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcc----
Confidence 34455566655443221 2444444444444555555 343455555667777777777777777777666542
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhcChh---HHHHHHHhcCCCCCCCcHHHHHHHHHHhccC
Q 046443 435 LAQSRHGASYQQQEVAMEALVDFCRQKT---FMVEMYANLDCDITCSNVFEDLANLLSKSAF 493 (1469)
Q Consensus 435 l~~~~~~~~~~~r~l~LE~l~~l~~~p~---~~~~ly~NYDCd~~~~nlfe~l~~~L~k~a~ 493 (1469)
..+ +..-|...||+|..++..-+ ++.||.. |=.+.+ ..+-.+.++.+.+.|.
T Consensus 343 -~~D----p~yIK~~KLeIL~~Lane~Nv~~IL~EL~e-Ya~d~D-~ef~r~aIrAIg~lA~ 397 (746)
T PTZ00429 343 -YSD----PPFVKLEKLRLLLKLVTPSVAPEILKELAE-YASGVD-MVFVVEVVRAIASLAI 397 (746)
T ss_pred -cCC----cHHHHHHHHHHHHHHcCcccHHHHHHHHHH-HhhcCC-HHHHHHHHHHHHHHHH
Confidence 121 23368999999999987754 4445543 222222 2466667777766553
No 40
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=21.53 E-value=1e+03 Score=25.50 Aligned_cols=127 Identities=16% Similarity=0.142 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCCCCcchhHHHHHHHHHHhhc-chhhHHhHHHHHHHHHHHHhccCCChhHHHHHH
Q 046443 1006 QAESLLQLARALIWAAGRPQKGNSSPEDEDTAVFCLELLIAITLNN-RDRIVLLWQGVYEHIANIVQSTVMPCALVEKAV 1084 (1469)
Q Consensus 1006 ~~esL~~lv~aL~~~s~~~~~~~~~~~~e~~~~F~Le~lv~v~l~N-~~Ri~~~W~~v~~hL~~i~~~~~~~~~l~erAv 1084 (1469)
....+..++.-+..+-... ..+.+-..+.++..++..| .+++..........+..+++.+. +....+-|+
T Consensus 19 ~~~~l~~l~~ri~~LL~s~--------~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~-~~~~~~~ai 89 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSK--------SAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPD-PPSVLEAAI 89 (165)
T ss_pred CHHHHHHHHHHHHHHhCCC--------ChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 4555566666555554321 1345667788888888887 67776666666677778887643 445667788
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHH-----HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCcccC
Q 046443 1085 FGLLRICQRLLPYKENLADELLRS-----LQLVLKLDARVADAYCEQITQEVSRLVKANATHIRS 1144 (1469)
Q Consensus 1085 ~~L~rl~~rll~~~e~l~~~lL~~-----L~~l~~l~~~v~~~v~~~Il~~L~~ll~~~~~~i~s 1144 (1469)
..+.++..+.-.+ .++.+++..| ++.++.+..+ ..+.+.++++|..++..+...++.
T Consensus 90 ~~L~~l~~~~~~~-p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp 151 (165)
T PF08167_consen 90 ITLTRLFDLIRGK-PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRP 151 (165)
T ss_pred HHHHHHHHHhcCC-CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccc
Confidence 8888888665543 3334433222 2333333221 245667778888888877777665
No 41
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=21.12 E-value=1.1e+02 Score=36.10 Aligned_cols=72 Identities=25% Similarity=0.358 Sum_probs=40.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Q 046443 372 IRRHPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYHHLRTELKLQLEAFFSCVILRLAQSRHGASYQQQEVAM 451 (1469)
Q Consensus 372 ~~~~p~l~~li~d~l~~~Ll~~~~s~~~~i~~~~lri~~~L~~~~r~~Lk~q~E~fl~~l~~~l~~~~~~~~~~~r~l~L 451 (1469)
|.-.|..++.|| ..||+|++++.. -++.+= ...|..||- ++..|-.... +|
T Consensus 237 fly~p~YLNaIQ-t~cPhllRYLat----------Avvtnk-~~rr~~lkd--------lvkVIqqE~y--sY------- 287 (432)
T KOG2758|consen 237 FLYQPPYLNAIQ-TSCPHLLRYLAT----------AVVTNK-RRRRNRLKD--------LVKVIQQESY--SY------- 287 (432)
T ss_pred HccCHHHHHHHH-hhCHHHHHHHHH----------Hhhcch-HhhHHHHHH--------HHHHHHHhcc--cc-------
Confidence 445566777776 578888887532 111111 344555553 3333333322 11
Q ss_pred HHHHHHhcCh--hHHHHHHHhcCCCCCCCc
Q 046443 452 EALVDFCRQK--TFMVEMYANLDCDITCSN 479 (1469)
Q Consensus 452 E~l~~l~~~p--~~~~~ly~NYDCd~~~~n 479 (1469)
+|| .|+.-+|+|||-|-...-
T Consensus 288 -------kDPiteFl~clyvn~DFdgAq~k 310 (432)
T KOG2758|consen 288 -------KDPITEFLECLYVNYDFDGAQKK 310 (432)
T ss_pred -------CCcHHHHHHHHhhccchHHHHHH
Confidence 243 588899999998865443
No 42
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=20.83 E-value=1.5e+03 Score=31.50 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHhhhcCCccccc
Q 046443 1322 MEGTLILAMKLLSKVFLQLLHELSQLTTFCKLWLGVLSRMEKYMKVKVRGKKSEKLQEIVPELLKNTLLIMKTRGVLVQR 1401 (1469)
Q Consensus 1322 ~~ET~~~al~lLskvFl~~L~~L~~~~~f~~lWl~iLd~~~~~m~~~~~~~~s~~L~Eav~EsLKN~LlvM~~~gil~~~ 1401 (1469)
|.|.|...+..+.++.-..- .+.....+.+....+|.-|+.|.- +.||+.+.-+.|+...++..++.-..+...|.+.
T Consensus 771 ~a~aR~~~V~al~~v~~~~~-~~~~~~~~~k~~e~LL~~lddYtt-d~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~ 848 (1133)
T KOG1943|consen 771 WAEARQQNVKALAHVCKTVT-SLLFSESIEKFRETLLNALDDYTT-DSRGDVGSWVREAAMKALSSLLDTLSSPKLLDED 848 (1133)
T ss_pred cHHHHHHHHHHHHHHHHHHH-HhhccccHHHHHHHHHHHHhhccc-ccCccHHHHHHHHHHHHHHhhhhhhcCcccccHH
Confidence 88888877776655543322 222345678888899999999874 4677777778888888888777766654444321
Q ss_pred cCC-CccchHHHHHHHHHHH
Q 046443 1402 SAL-GGDSLWELTWLHVNNI 1420 (1469)
Q Consensus 1402 ~~~-~~~~lW~~Tw~~i~~~ 1420 (1469)
.-. ...-+-..+.++|++.
T Consensus 849 ~i~~~~~~~vqQ~veKIdrl 868 (1133)
T KOG1943|consen 849 SINRIIRYFVQQAVEKIDRL 868 (1133)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 100 0112444556677665
No 43
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=20.50 E-value=3.9e+02 Score=28.98 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=62.9
Q ss_pred HHHHHhcCcccCCchHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 046443 362 NSAIELGGPAIRRHPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYHHLRTELKLQLEAFFSCVILRLAQSRHG 441 (1469)
Q Consensus 362 ~~~le~~g~~~~~~p~l~~li~d~l~~~Ll~~~~s~~~~i~~~~lri~~~L~~~~r~~Lk~q~E~fl~~l~~~l~~~~~~ 441 (1469)
+.++..-|+...+||.++. +..+.|...+..+++.+=..++.++..|+. .+.+|..-.+|...+ ..+.++
T Consensus 6 ~n~i~~l~DL~~r~~~~ve----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~--~d~ik~k~~l~~~~l-~~l~D~--- 75 (178)
T PF12717_consen 6 NNAIIALGDLCIRYPNLVE----PYLPNLYKCLRDEDPLVRKTALLVLSHLIL--EDMIKVKGQLFSRIL-KLLVDE--- 75 (178)
T ss_pred HHHHHHHHHHHHhCcHHHH----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--cCceeehhhhhHHHH-HHHcCC---
Confidence 4456666777888998875 556666666677778887888888888774 355666655555433 344332
Q ss_pred CCHHHHHHHHHHHHHHhcC--hhHH
Q 046443 442 ASYQQQEVAMEALVDFCRQ--KTFM 464 (1469)
Q Consensus 442 ~~~~~r~l~LE~l~~l~~~--p~~~ 464 (1469)
..+-|..|..+|.++... |+.+
T Consensus 76 -~~~Ir~~A~~~~~e~~~~~~~~~i 99 (178)
T PF12717_consen 76 -NPEIRSLARSFFSELLKKRNPNII 99 (178)
T ss_pred -CHHHHHHHHHHHHHHHHhccchHH
Confidence 357888999988887766 6665
No 44
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=20.25 E-value=9.9e+02 Score=26.01 Aligned_cols=129 Identities=17% Similarity=0.156 Sum_probs=61.3
Q ss_pred cCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHHHHhhcCCcchhcchHHHHHHHHHHHHHHHHHH
Q 046443 1261 LDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDYRNMEGTLILAMKLLSKVFLQL 1340 (1469)
Q Consensus 1261 ~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d~~~~~ET~~~al~lLskvFl~~ 1340 (1469)
.|.--|+|+.|..+|+..|. .-...+ .+..+++.|+--+ +.-.+.++++...|.|+-...
T Consensus 37 vDDGLelRK~ayE~lytlLd-~~~~~~---~~~~~~~~v~~GL----------------~D~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 37 VDDGLELRKAAYECLYTLLD-TCLSRI---DISEFLDRVEAGL----------------KDEHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp EEGGGHHHHHHHHHHHHHHH-STCSSS----HHHHHHHHHHTT----------------SS-HHHHHHHHHHHHHHHHS-
T ss_pred ecCcHHHHHHHHHHHHHHHH-HHHHhC---CHHHHHHHHHhhc----------------CCcHHHHHHHHHHHHHHHHhC
Confidence 35668999999999999998 322233 2344444333111 112355666666666653322
Q ss_pred HHHh-hchhhHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHhhhcCCccccccCCCcc-chHHHHHHHHH
Q 046443 1341 LHEL-SQLTTFCKLWLGVLSRMEKYMKVKVRGKKSEKLQEIVPELLKNTLLIMKTRGVLVQRSALGGD-SLWELTWLHVN 1418 (1469)
Q Consensus 1341 L~~L-~~~~~f~~lWl~iLd~~~~~m~~~~~~~~s~~L~Eav~EsLKN~LlvM~~~gil~~~~~~~~~-~lW~~Tw~~i~ 1418 (1469)
-..+ ..++.+.+-+..+|.. =.+.+ ...+=.|=.-|..|.+|.++.+=.--.|. .... .-|..-|+.+.
T Consensus 97 p~~v~~~Ld~l~~~l~~~L~~---k~k~~----AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~--~~~~~~~~~~f~~~i~ 167 (169)
T PF08623_consen 97 PEEVLQRLDSLVEPLRKTLSK---KLKEN----AVKQEIEKQQELIRSVLRAVKALNSKIPG--AESSPNKWNEFVEWIK 167 (169)
T ss_dssp HHHHHHCCTTTHHHHHHHHH-------TT----S-HHHHHHHHHHHHHHHHHHHHH-HSSTS---SSSH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc---cCCCC----cccccHHHHHHHHHHHHHHHHHHHHhCcc--cccCHHHHHHHHHHHh
Confidence 2222 2255666666666651 11221 11111233334444444444332111121 1223 48999998775
No 45
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=20.16 E-value=9.5e+02 Score=30.22 Aligned_cols=77 Identities=25% Similarity=0.403 Sum_probs=52.9
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHHHHhhcCCcchhcchHHHHHHHHHH
Q 046443 1253 VQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDYRNMEGTLILAMKL 1332 (1469)
Q Consensus 1253 Lq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d~~~~~ET~~~al~l 1332 (1469)
.+-|.....+.+.+=|+.|++-|...+. +| .|+ .|+.+|.++|.-+++-|.+.. +. --+.+|+..
T Consensus 289 ~~~l~~~~g~e~a~~~k~alsel~~m~~--e~-sfs--vWeq~f~~iL~~l~EvL~d~~------~~----~~k~laLrv 353 (516)
T KOG2956|consen 289 ADLLKEISGSERASERKEALSELPKMLC--EG-SFS--VWEQHFAEILLLLLEVLSDSE------DE----IIKKLALRV 353 (516)
T ss_pred HHHHHhccCccchhHHHHHHHHHHHHHH--cc-chh--HHHHHHHHHHHHHHHHHccch------hh----HHHHHHHHH
Confidence 3344445556799999999999999887 33 344 999999999988887774311 11 124678888
Q ss_pred HHHHHHHHHHHh
Q 046443 1333 LSKVFLQLLHEL 1344 (1469)
Q Consensus 1333 LskvFl~~L~~L 1344 (1469)
|.++.-..=..|
T Consensus 354 L~~ml~~Q~~~l 365 (516)
T KOG2956|consen 354 LREMLTNQPARL 365 (516)
T ss_pred HHHHHHhchHhh
Confidence 887765544433
Done!