Query 046443
Match_columns 1469
No_of_seqs 364 out of 1096
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 21:28:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r8s_E ARNO; protein transport 100.0 1.6E-59 5.6E-64 504.1 20.4 194 560-755 7-200 (203)
2 3ltl_A Brefeldin A-inhibited g 100.0 2.2E-59 7.4E-64 504.4 19.8 195 559-755 12-208 (211)
3 1ku1_A ARF guanine-nucleotide 100.0 2.2E-58 7.6E-63 504.4 18.9 196 559-758 17-228 (230)
4 1xsz_A Guanine nucleotide exch 100.0 2.5E-52 8.6E-57 477.8 17.7 191 565-755 7-200 (356)
5 2r09_A Cytohesin-3; autoinhibi 100.0 7.9E-50 2.7E-54 473.3 21.2 191 563-755 12-202 (347)
6 2qk2_A LP04448P; mini spindles 85.2 30 0.001 37.4 18.5 176 1166-1393 33-208 (242)
7 4fdd_A Transportin-1; heat rep 81.6 1.2E+02 0.0042 39.2 25.3 201 1078-1307 457-678 (852)
8 2qk2_A LP04448P; mini spindles 78.6 48 0.0016 35.8 16.9 169 1082-1280 34-205 (242)
9 1qgr_A Protein (importin beta 78.2 1.6E+02 0.0056 37.7 28.9 238 1121-1392 578-829 (876)
10 2jdq_A Importin alpha-1 subuni 76.7 1.1E+02 0.0038 35.7 20.7 300 1037-1392 82-392 (450)
11 1qgr_A Protein (importin beta 75.7 1.9E+02 0.0064 37.1 25.8 250 1040-1307 584-850 (876)
12 1ibr_B P95, importin beta-1 su 74.8 80 0.0028 37.0 18.8 117 1147-1280 125-246 (462)
13 1b3u_A Protein (protein phosph 74.7 1.4E+02 0.0048 36.2 21.6 148 1121-1308 62-212 (588)
14 2bpt_A Importin beta-1 subunit 73.7 2.1E+02 0.0071 36.7 30.0 301 1055-1392 492-813 (861)
15 1u6g_C TIP120 protein, CAND1; 68.8 3E+02 0.01 37.1 24.7 223 1122-1392 449-681 (1230)
16 1ibr_B P95, importin beta-1 su 64.3 2.1E+02 0.0073 33.2 21.3 121 1058-1179 125-248 (462)
17 1u6g_C TIP120 protein, CAND1; 63.8 2.4E+02 0.0082 38.1 22.1 236 1038-1304 452-701 (1230)
18 4b8j_A Importin subunit alpha- 62.6 2.2E+02 0.0076 34.2 19.6 71 1252-1337 287-357 (528)
19 4fdd_A Transportin-1; heat rep 58.0 2.3E+02 0.0079 36.6 19.6 134 1121-1280 104-244 (852)
20 3tjz_B Coatomer subunit gamma; 56.3 37 0.0013 39.6 10.1 23 1256-1278 329-351 (355)
21 4hxt_A De novo protein OR329; 54.5 1.3E+02 0.0046 31.6 14.0 71 1252-1338 171-241 (252)
22 2bpt_A Importin beta-1 subunit 48.2 5.3E+02 0.018 32.7 30.2 113 1059-1179 409-531 (861)
23 1wa5_B Importin alpha subunit; 40.7 5.4E+02 0.019 30.7 26.0 112 1252-1392 342-459 (530)
24 2of3_A ZYG-9; multifunctional 39.0 3.2E+02 0.011 30.4 13.8 95 353-458 62-160 (266)
25 1b3u_A Protein (protein phosph 38.3 68 0.0023 39.0 9.2 50 1250-1308 86-135 (588)
26 1wa5_B Importin alpha subunit; 35.4 6.4E+02 0.022 30.1 19.6 65 1261-1338 393-457 (530)
27 2qk1_A Protein STU2; STU2P, XM 33.4 4.9E+02 0.017 28.1 16.4 161 1123-1308 32-200 (249)
28 2qk1_A Protein STU2; STU2P, XM 30.9 5.3E+02 0.018 27.8 17.8 184 1165-1393 33-223 (249)
29 4hxt_A De novo protein OR329; 29.4 2.1E+02 0.0071 30.0 10.3 111 1252-1391 129-242 (252)
30 4db6_A Armadillo repeat protei 28.4 2.7E+02 0.0091 28.5 10.7 110 1252-1388 97-207 (210)
31 2jdq_A Importin alpha-1 subuni 27.6 1.2E+02 0.0041 35.4 8.6 118 1246-1390 12-136 (450)
32 1mhq_A ADP-ribosylation factor 22.3 5.7E+02 0.02 25.5 11.2 70 390-459 43-116 (148)
33 4db6_A Armadillo repeat protei 21.9 3.8E+02 0.013 27.3 10.4 110 1252-1390 55-167 (210)
34 1j1v_A Chromosomal replication 21.6 80 0.0027 29.3 4.2 61 569-635 7-68 (94)
35 4db8_A Armadillo-repeat protei 21.5 7E+02 0.024 25.9 13.1 121 352-489 27-148 (252)
36 3kkc_A TETR family transcripti 20.9 2.3E+02 0.008 27.8 8.2 60 562-638 11-70 (177)
37 4b8j_A Importin subunit alpha- 20.3 9.1E+02 0.031 28.6 14.8 110 352-470 89-200 (528)
No 1
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=100.00 E-value=1.6e-59 Score=504.06 Aligned_cols=194 Identities=43% Similarity=0.759 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhhccCCChhHHhhhhcCCchhHHHHHHHHHhcC
Q 046443 560 RRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTF 639 (1469)
Q Consensus 560 ~~~k~~K~~~~~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~igeyl~~~~~~~~~vl~~f~~~f 639 (1469)
++.|++|+.+..|+.+||+|||+||+||+++|++++ +|++||+||+.+++|||++||+|||++++|+.+||++|++.|
T Consensus 7 ~~~~~~k~~~~~g~~~FN~~PkkGi~~L~~~~~l~~--~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~~vl~~y~~~f 84 (203)
T 1r8s_E 7 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQN--TPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLH 84 (203)
T ss_dssp ------CHHHHHHHHHHHHCHHHHHHHHHHTTSSCS--SHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHhhCHHHHHHHHHHCCCCCC--CHHHHHHHHHHCcCcCHHHHHHHHhccchHHHHHHHHHHHhc
Confidence 456788999999999999999999999999999986 899999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhccccccccCCCCHHHH
Q 046443 640 DFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDF 719 (1469)
Q Consensus 640 df~~~~~~~alR~~l~~frlpgE~q~I~ri~e~Fa~~y~~~n~~~~~~~d~~~~l~ysiimLntdlhn~~~k~~mt~~~F 719 (1469)
||+|++||+|||.||.+||||||+|+||||||+||+|||+|||++|.|+|+||+|||||||||||+|||++|+|||+++|
T Consensus 85 dF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D~~~vLaySiImLNTDlHn~~vk~kMt~~~F 164 (203)
T 1r8s_E 85 EFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERF 164 (203)
T ss_dssp CCTTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHH
T ss_pred CCCCCcHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHhCCcccCCcchHHHHHHHHHHhcccccCcccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCCCHHHHHHHHHHhhcCccccCCCC
Q 046443 720 IRNNRHINGGNDLPREFLSELYHSICKNEIRTTPEQ 755 (1469)
Q Consensus 720 ~~n~~~~n~g~d~~~~~L~~iy~~I~~~~i~~~~~~ 755 (1469)
++|+||+|+|+|||+++|+.||++|+++||++++++
T Consensus 165 i~n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d~ 200 (203)
T 1r8s_E 165 VAMNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDD 200 (203)
T ss_dssp HHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC-
T ss_pred HHHhhcccCCCCCCHHHHHHHHHHHHhCCCCCccCc
Confidence 999999999999999999999999999999999987
No 2
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=100.00 E-value=2.2e-59 Score=504.41 Aligned_cols=195 Identities=42% Similarity=0.723 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhhccCCChhHHhhhhcCCchhHHHHHHHHHhc
Q 046443 559 VRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGT 638 (1469)
Q Consensus 559 l~~~k~~K~~~~~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~igeyl~~~~~~~~~vl~~f~~~ 638 (1469)
.+.+|++|+.+.+|+.+||+|||+||+||+++|++++ +|++||+||+++++|||++||+|||++++|+.+||++|++.
T Consensus 12 ~~~~k~rK~~~~~g~~~FN~~PkkGi~~L~~~g~i~~--~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~~vL~~yv~~ 89 (211)
T 3ltl_A 12 FEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGT--TPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVDQ 89 (211)
T ss_dssp ---CCSHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCS--SHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHcCCCCC--CHHHHHHHHHhCcCccHHHHHHHHhccchhHHHHHHHHHHh
Confidence 4667889999999999999999999999999999986 89999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCCC--CCCCcchHHHHHHHHHHhhhccccccccCCCCH
Q 046443 639 FDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQ--ILANKDAALLLSYSLIMLNTDQHNVQVKKKMTE 716 (1469)
Q Consensus 639 fdf~~~~~~~alR~~l~~frlpgE~q~I~ri~e~Fa~~y~~~n~~--~~~~~d~~~~l~ysiimLntdlhn~~~k~~mt~ 716 (1469)
|||+|++||+|||.||.+||||||+|+||||||+||+|||+|||+ +|.|+|+||+|+||+||||||+|||++|+|||+
T Consensus 90 fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s~D~~~iLaySiImLNTDlHn~~vk~kMt~ 169 (211)
T 3ltl_A 90 HDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTK 169 (211)
T ss_dssp SCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSSHHHHHHHHHHHHHHHHHHTCTTCCSCCCH
T ss_pred cCCCCCCHHHHHHHHHHhCcCCCchhHHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHHHhhhhcCccccCCCCH
Confidence 999999999999999999999999999999999999999999996 799999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCHHHHHHHHHHhhcCccccCCCC
Q 046443 717 EDFIRNNRHINGGNDLPREFLSELYHSICKNEIRTTPEQ 755 (1469)
Q Consensus 717 ~~F~~n~~~~n~g~d~~~~~L~~iy~~I~~~~i~~~~~~ 755 (1469)
++|++|+||+|+|+|||++||+.||++|+++||+|+++.
T Consensus 170 ~~Fi~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~ 208 (211)
T 3ltl_A 170 EQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETK 208 (211)
T ss_dssp HHHHHHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC---
T ss_pred HHHHHHhhcccCCCCCCHHHHHHHHHHHHhCCccCCCCC
Confidence 999999999999999999999999999999999999875
No 3
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=100.00 E-value=2.2e-58 Score=504.44 Aligned_cols=196 Identities=36% Similarity=0.587 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhhc-cCCChhHHhhhhcCCchhHHHHHHHHHh
Q 046443 559 VRRRKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYT-AGLDKNLVGDFLGNHDEFCVQVLHEFAG 637 (1469)
Q Consensus 559 l~~~k~~K~~~~~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~-~~l~k~~igeyl~~~~~~~~~vl~~f~~ 637 (1469)
++++|++|+.+++|+.+||+|||+||+||+++|+|+++ +|++||+||+.+ ++|||++||+|||++++ .+||++|++
T Consensus 17 ~~~~r~~K~~~~~~~~~FN~~PkkGI~~L~~~g~l~~~-~~~~iA~fL~~~~~~L~k~~iGeyLg~~~n--~~vL~~yv~ 93 (230)
T 1ku1_A 17 RGSHMDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASD-SDKDIAEFLFNNNNRMNKKTIGLLLCHPDK--VSLLNEYIR 93 (230)
T ss_dssp SSSCHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSSCS-SHHHHHHHHHHTTTTSCHHHHHHHHTCGGG--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcCCC-CHHHHHHHHHHcCcccCHHHHHHHHcCccH--HHHHHHHHh
Confidence 46788899999999999999999999999999999863 799999999765 68999999999998876 899999999
Q ss_pred cCCCCCCCHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCC---------------CCCCCcchHHHHHHHHHHhh
Q 046443 638 TFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSP---------------QILANKDAALLLSYSLIMLN 702 (1469)
Q Consensus 638 ~fdf~~~~~~~alR~~l~~frlpgE~q~I~ri~e~Fa~~y~~~n~---------------~~~~~~d~~~~l~ysiimLn 702 (1469)
+|||+|++||+|||.||.+||||||+|+||||||+||+|||+||| .+|.|+|+||+|||||||||
T Consensus 94 ~fdF~g~~ld~ALR~fL~~f~LPGEaQ~IdRile~Fa~rY~~~N~~~p~~~~~~~~~~~~~~f~s~D~vyvLaySiImLN 173 (230)
T 1ku1_A 94 LFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIMLN 173 (230)
T ss_dssp TSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCGGGCCCCHHHHHHHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHhCCCCccccccccccccccccCCchHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999997 46899999999999999999
Q ss_pred hccccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHhhcCccccCCCCCCC
Q 046443 703 TDQHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSELYHSICKNEIRTTPEQGVG 758 (1469)
Q Consensus 703 tdlhn~~~k~~mt~~~F~~n~~~~n~g~d~~~~~L~~iy~~I~~~~i~~~~~~~~~ 758 (1469)
||+|||++|+|||+++|+||+||+|+|+|||++||++||++|+++||+|++|| +|
T Consensus 174 TDlHnp~vk~kMT~~~FikN~rg~n~g~d~p~e~L~~iY~~I~~~ei~~~ee~-~g 228 (230)
T 1ku1_A 174 TDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMPEEH-HG 228 (230)
T ss_dssp HHHTCTTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC------
T ss_pred hhhccccccCCCCHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhCcccCCccC-CC
Confidence 99999999999999999999999999999999999999999999999999998 45
No 4
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=100.00 E-value=2.5e-52 Score=477.85 Aligned_cols=191 Identities=36% Similarity=0.562 Sum_probs=179.0
Q ss_pred HHHHHHHHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhh-ccCCChhHHhhhhcCCchhHHHHHHHHHhcCCCCC
Q 046443 565 IKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRY-TAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQD 643 (1469)
Q Consensus 565 ~K~~~~~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~-~~~l~k~~igeyl~~~~~~~~~vl~~f~~~fdf~~ 643 (1469)
.|+...+|+.+||+|||+||+||++.+......+|++||+||+. +++|||++||+|||++++|+.+||++|+++|||+|
T Consensus 7 ~~k~~~e~i~~FN~~PkkGI~~L~~~~~~~~~~~p~~IA~FL~~~~~~LdK~~IGeyLg~~~~~n~~VL~~yv~~fdF~g 86 (356)
T 1xsz_A 7 IEKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNG 86 (356)
T ss_dssp HHHTHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHHHHHHHHHHTSCCTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccccCCCCHHHHHHHHHhcCCCCCHHHHHHHHcCCchHHHHHHHHHHHhcCCCC
Confidence 45667789999999999999999986332222468999999975 79999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhcccccccc--CCCCHHHHHH
Q 046443 644 MNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILANKDAALLLSYSLIMLNTDQHNVQVK--KKMTEEDFIR 721 (1469)
Q Consensus 644 ~~~~~alR~~l~~frlpgE~q~I~ri~e~Fa~~y~~~n~~~~~~~d~~~~l~ysiimLntdlhn~~~k--~~mt~~~F~~ 721 (1469)
++||+|||.||.+||||||+|+||||||+||+|||+|||+.|.|+|+||+|+|||||||||+|||++| +|||+++|++
T Consensus 87 ~~ld~ALR~fL~~frLPGEaQ~IDRile~FA~rY~~~Np~~f~s~D~~yvLaySiImLNTDLHNpnvk~k~kMT~~dFik 166 (356)
T 1xsz_A 87 QSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKR 166 (356)
T ss_dssp SCHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHHHHHHHHHHHHHHHHHHHCTTSCGGGSCCHHHHHH
T ss_pred CCHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHhCCCccCChhHHHHHHHHHHHhcccccCccccccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred hhccCCCCCCCCHHHHHHHHHHhhcCccccCCCC
Q 046443 722 NNRHINGGNDLPREFLSELYHSICKNEIRTTPEQ 755 (1469)
Q Consensus 722 n~~~~n~g~d~~~~~L~~iy~~I~~~~i~~~~~~ 755 (1469)
|+||+|+|+|||+++|++||++|+.+||++...+
T Consensus 167 N~rgin~g~d~p~e~L~~iYd~I~~~ei~l~~~~ 200 (356)
T 1xsz_A 167 NLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVK 200 (356)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCBCS
T ss_pred HhhcccCCCCCCHHHHHHHHHHHHhCCCccCCcc
Confidence 9999999999999999999999999999997654
No 5
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=100.00 E-value=7.9e-50 Score=473.35 Aligned_cols=191 Identities=43% Similarity=0.758 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhhccCCChhHHhhhhcCCchhHHHHHHHHHhcCCCC
Q 046443 563 KYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQ 642 (1469)
Q Consensus 563 k~~K~~~~~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~igeyl~~~~~~~~~vl~~f~~~fdf~ 642 (1469)
|.+|+.+.+|+.+||.|||+||+||+++|++++ +|++||+||+.+++|||++||+|||++++|+.+||++|++.|||+
T Consensus 12 ~~~~~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~--~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vl~~~~~~~~f~ 89 (347)
T 2r09_A 12 TQRNAQIAMGRKKFNMDPKKGIQFLIENDLLQS--SPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFVELHEFA 89 (347)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCC--SHHHHHHHHHHCTTCCHHHHHHHHHCCSHHHHHHHHHHHHTSCCT
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHCCCCCC--CHHHHHHHHHhCcCcCHHHHHHHhcCCCchHHHHHHHHHHhcCcC
Confidence 567899999999999999999999999999987 899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhccccccccCCCCHHHHHHh
Q 046443 643 DMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRN 722 (1469)
Q Consensus 643 ~~~~~~alR~~l~~frlpgE~q~I~ri~e~Fa~~y~~~n~~~~~~~d~~~~l~ysiimLntdlhn~~~k~~mt~~~F~~n 722 (1469)
|++||+|||.||.+||||||+|+||||||+||+|||+|||++|.|+|+||+|+||+||||||+|||++|+|||+++|++|
T Consensus 90 ~~~~~~alR~~l~~f~lpgE~q~idril~~Fa~~y~~~np~~~~~~d~~~~l~~siimLntdlhn~~~k~kmt~~~fi~n 169 (347)
T 2r09_A 90 DLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITM 169 (347)
T ss_dssp TCCHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHHHhCCcccCChhHHHHHHHHHHHHhhhhhcccccccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCHHHHHHHHHHhhcCccccCCCC
Q 046443 723 NRHINGGNDLPREFLSELYHSICKNEIRTTPEQ 755 (1469)
Q Consensus 723 ~~~~n~g~d~~~~~L~~iy~~I~~~~i~~~~~~ 755 (1469)
+||+|+|+|||+++|+.+|++|+.+||.+++++
T Consensus 170 ~~~~~~~~~~p~e~L~~iY~~I~~~ei~~~~e~ 202 (347)
T 2r09_A 170 NRGINEGGDLPEELLRNLYESIKNEPFKIPEDD 202 (347)
T ss_dssp TTTTBTTBCCCHHHHHHHHHHHHHSCCCCTTCC
T ss_pred hhcccCCCCCCHHHHHHHHHhhccCcccccccc
Confidence 999999999999999999999999999998875
No 6
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=85.19 E-value=30 Score=37.37 Aligned_cols=176 Identities=10% Similarity=0.083 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHhhcCchhhHHHHHHHHHhhhHhhhhhhhhhhhccChhhhhhhhhhH
Q 046443 1166 EAGFEALLFIMSDGTHLLPANYVLCIDSARQFAESRVGQAERSVRALELMSGSVDCLARWGREAKESMGEDEVAKLSQDI 1245 (1469)
Q Consensus 1166 ~~aFe~L~lIi~d~~~l~~~nf~~cVd~l~~F~~q~~~~~~~Sl~AI~Ll~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 1245 (1469)
+.|...|.-++.....+...++..++..+......+.+ .++...|+..+..+...+ ....
T Consensus 33 ~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l-------------------~~~~ 92 (242)
T 2qk2_A 33 KESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN-VVLVAMAGKCLALLAKGL-------------------AKRF 92 (242)
T ss_dssp HHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHH-------------------GGGG
T ss_pred HHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHH-------------------hhhH
Confidence 34556666666653334344566666655554421111 122223333332222211 1123
Q ss_pred HhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHHHHhhcCCcchhcchHHH
Q 046443 1246 GEMWLRLVQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDYRNMEGT 1325 (1469)
Q Consensus 1246 ~~lW~pLLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d~~~~~ET 1325 (1469)
..++-.++..|.+...|+...||..|..+|..++. .. + +.. ++|.+...++ + +.| ..
T Consensus 93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~-~~----~-------~~~-ll~~l~~~l~--------~-~~~-~v 149 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA-ST----S-------LEA-QQESIVESLS--------N-KNP-SV 149 (242)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT-TS----C-------HHH-HHHHHHHHTT--------C-SCH-HH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-cC----C-------HHH-HHHHHHHHHc--------C-CCh-HH
Confidence 45677889999999999999999999999999887 21 1 222 2233322221 1 233 56
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHhhh
Q 046443 1326 LILAMKLLSKVFLQLLHELSQLTTFCKLWLGVLSRMEKYMKVKVRGKKSEKLQEIVPELLKNTLLIMK 1393 (1469)
Q Consensus 1326 ~~~al~lLskvFl~~L~~L~~~~~f~~lWl~iLd~~~~~m~~~~~~~~s~~L~Eav~EsLKN~LlvM~ 1393 (1469)
+..++..|+.++..+-. ...+...+..++..+-.++.. ....+.++..+.+..+..++.
T Consensus 150 r~~~l~~l~~~l~~~~~----~~~~~~~l~~l~p~l~~~l~D-----~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 150 KSETALFIARALTRTQP----TALNKKLLKLLTTSLVKTLNE-----PDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHHHHTTCCG----GGCCHHHHHHHHHHHHHHHTS-----SCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCC----CCccHHHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHHHHcC
Confidence 77788888876543211 113456778888888888864 345688888888888777764
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=81.59 E-value=1.2e+02 Score=39.16 Aligned_cols=201 Identities=12% Similarity=0.105 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCcccCccChHHHHHHHH-
Q 046443 1078 ALVEKAVFGLLRICQRLLPYKENLADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKANATHIRSQMGWRTITSLLS- 1156 (1469)
Q Consensus 1078 ~l~erAv~~L~rl~~rll~~~e~l~~~lL~~L~~l~~l~~~v~~~v~~~Il~~L~~ll~~~~~~i~s~~gW~~If~iL~- 1156 (1469)
..++.|..++..++...-..-....+.++..|..++.-.. ......+++++..+...-+..+..+.....+...|-
T Consensus 457 ~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~---~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~ 533 (852)
T 4fdd_A 457 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQ---HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQ 533 (852)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHH
Confidence 4556666666666643211111123444444443332211 122234556666666555544433334444444332
Q ss_pred ---hhhcCCcchHHHHHHHHHHHhcCC-CC---ChhhHHHHHHHHHHHHHh-------h--c--CchhhHHHHHHHHHhh
Q 046443 1157 ---ITARHPEASEAGFEALLFIMSDGT-HL---LPANYVLCIDSARQFAES-------R--V--GQAERSVRALELMSGS 1218 (1469)
Q Consensus 1157 ---~~~~~~~~~~~aFe~L~lIi~d~~-~l---~~~nf~~cVd~l~~F~~q-------~--~--~~~~~Sl~AI~Ll~~~ 1218 (1469)
.........+.+++++..|+.... +. .+.-|..|+..+..+..+ . . ...+.-..+++++..+
T Consensus 534 ~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l 613 (852)
T 4fdd_A 534 KWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGL 613 (852)
T ss_dssp HHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHH
Confidence 222222233567888887775421 22 223345566666554321 0 0 0112223455555444
Q ss_pred hHhhhhhhhhhhhccChhhhhhhhhhHHhHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHH
Q 046443 1219 VDCLARWGREAKESMGEDEVAKLSQDIGEMW--LRLVQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCF 1296 (1469)
Q Consensus 1219 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lW--~pLLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f 1296 (1469)
+..+.. + ...++ -.++..+.+...|+.++||..|+..|-.+.. ..+. .+...+
T Consensus 614 ~~~l~~------------~-------~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~-~~~~-----~~~~~l 668 (852)
T 4fdd_A 614 AEGLGG------------N-------IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTK-ACFQ-----HVKPCI 668 (852)
T ss_dssp HHHHGG------------G-------GHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHH-HCGG-----GTGGGH
T ss_pred HHHHhH------------h-------HHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHH-HhhH-----HHHHHH
Confidence 332210 0 11121 1344555556678889999999999988775 3332 344445
Q ss_pred HHhhhhhhHHH
Q 046443 1297 DMVIFTMLDDL 1307 (1469)
Q Consensus 1297 ~~VLFPLLd~L 1307 (1469)
.. ++|++-+.
T Consensus 669 ~~-~lp~l~~~ 678 (852)
T 4fdd_A 669 AD-FMPILGTN 678 (852)
T ss_dssp HH-HHHHHHHT
T ss_pred HH-HHHHHHHH
Confidence 55 34555443
No 8
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=78.64 E-value=48 Score=35.75 Aligned_cols=169 Identities=12% Similarity=0.037 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhCCC-hhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCcccCccChHHHHHHHHhhhc
Q 046443 1082 KAVFGLLRICQRLLPY-KENLADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKANATHIRSQMGWRTITSLLSITAR 1160 (1469)
Q Consensus 1082 rAv~~L~rl~~rll~~-~e~l~~~lL~~L~~l~~l~~~v~~~v~~~Il~~L~~ll~~~~~~i~s~~gW~~If~iL~~~~~ 1160 (1469)
.|+..|..++...-.. ...+ .+++..|..++.-+.+ ..++...+.++..+...-+..+.. .+..|+..|-...+
T Consensus 34 ~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~--~~V~~~a~~~l~~la~~l~~~~~~--~~~~ilp~ll~~l~ 108 (242)
T 2qk2_A 34 ESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSN--VVLVAMAGKCLALLAKGLAKRFSN--YASACVPSLLEKFK 108 (242)
T ss_dssp HHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSC--HHHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHc
Confidence 3666666555421110 1122 3455555554422322 357888888998888776766655 67777776665555
Q ss_pred CCc--chHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHhhcCchhhHHHHHHHHHhhhHhhhhhhhhhhhccChhhh
Q 046443 1161 HPE--ASEAGFEALLFIMSDGTHLLPANYVLCIDSARQFAESRVGQAERSVRALELMSGSVDCLARWGREAKESMGEDEV 1238 (1469)
Q Consensus 1161 ~~~--~~~~aFe~L~lIi~d~~~l~~~nf~~cVd~l~~F~~q~~~~~~~Sl~AI~Ll~~~~~~l~~~~~~~~~~~~~~~~ 1238 (1469)
+++ ....+.++|.-++... + +..+++.+......+. ..+-..+++.+..+.. ... +.
T Consensus 109 d~~~~vr~~a~~aL~~~~~~~---~---~~~ll~~l~~~l~~~~--~~vr~~~l~~l~~~l~---~~~---~~------- 167 (242)
T 2qk2_A 109 EKKPNVVTALREAIDAIYAST---S---LEAQQESIVESLSNKN--PSVKSETALFIARALT---RTQ---PT------- 167 (242)
T ss_dssp CCCHHHHHHHHHHHHHHHTTS---C---HHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHHT---TCC---GG-------
T ss_pred CCCHHHHHHHHHHHHHHHHcC---C---HHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHH---HcC---CC-------
Confidence 554 3356788888777642 2 4455555544433321 1333345554433221 100 00
Q ss_pred hhhhhhHHhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 046443 1239 AKLSQDIGEMWLRLVQALRKVCLDQREDVRNHALLSLQKCLT 1280 (1469)
Q Consensus 1239 ~~~~~~~~~lW~pLLq~La~lc~d~r~EVR~~AiqtL~r~Ll 1280 (1469)
.....++-.++..|..+..|+.++||..|+.+|..+..
T Consensus 168 ----~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 168 ----ALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp ----GCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred ----CccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 01134556677788888889999999999999998776
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=78.21 E-value=1.6e+02 Score=37.71 Aligned_cols=238 Identities=9% Similarity=0.015 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHhccc-CcccCccChHHHHHHHHhhhcCC----cchHHHHHHHHHHHhcC-CCCChhhHHHHHHHH
Q 046443 1121 DAYCEQITQEVSRLVKANA-THIRSQMGWRTITSLLSITARHP----EASEAGFEALLFIMSDG-THLLPANYVLCIDSA 1194 (1469)
Q Consensus 1121 ~~v~~~Il~~L~~ll~~~~-~~i~s~~gW~~If~iL~~~~~~~----~~~~~aFe~L~lIi~d~-~~l~~~nf~~cVd~l 1194 (1469)
.+++..+..++..++...+ ..+.. ....|+..|-...+++ .....++.++..|+... ....| .+..++..+
T Consensus 578 ~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~-~~~~~~~~l 654 (876)
T 1qgr_A 578 NDLQSLLCATLQNVLRKVQHQDALQ--ISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLK-YMEAFKPFL 654 (876)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHT--THHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGG-GHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhhhH--HHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHH-HHHHHHHHH
Confidence 4566777788888877666 44543 3344444443333322 23345677777666532 11111 122333333
Q ss_pred HHHHHhhcCchhhHHHHHHHHHhhhHhhhhhhhhhhhccChhhhhhhhhhHHhHHHHHHHHHHHhhcC--CcHHHHHHHH
Q 046443 1195 RQFAESRVGQAERSVRALELMSGSVDCLARWGREAKESMGEDEVAKLSQDIGEMWLRLVQALRKVCLD--QREDVRNHAL 1272 (1469)
Q Consensus 1195 ~~F~~q~~~~~~~Sl~AI~Ll~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLLq~La~lc~d--~r~EVR~~Ai 1272 (1469)
........ ..++-..|+..+..+...+. .....++-.++..|.+...+ ..+++|..|+
T Consensus 655 ~~~l~~~~-~~~vr~~a~~~l~~l~~~~~-------------------~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~ 714 (876)
T 1qgr_A 655 GIGLKNYA-EYQVCLAAVGLVGDLCRALQ-------------------SNIIPFCDEVMQLLLENLGNENVHRSVKPQIL 714 (876)
T ss_dssp HHHHHHCT-THHHHHHHHHHHHHHHHHHG-------------------GGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHH
T ss_pred HHHHcCcc-hHHHHHHHHHHHHHHHHHHH-------------------HhhhhhHHHHHHHHHHHhCCccccHHhhHHHH
Confidence 33322211 11333345555544432211 01223444566666555444 4678999999
Q ss_pred HHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHHHHhhcCCcchhcch-HHHHHHHHHHHHHHHHHHHHHhh-----c
Q 046443 1273 LSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDYRNM-EGTLILAMKLLSKVFLQLLHELS-----Q 1346 (1469)
Q Consensus 1273 qtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d~~~~-~ET~~~al~lLskvFl~~L~~L~-----~ 1346 (1469)
.++-++.. ..|..+.+ .+ ..++|++....+........|.... .+.+.-++..+..++.. +.... .
T Consensus 715 ~~l~~i~~-~~g~~~~~-----~l-~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~-~~~~~~~~~~~ 786 (876)
T 1qgr_A 715 SVFGDIAL-AIGGEFKK-----YL-EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQG-LKGDQENVHPD 786 (876)
T ss_dssp HHHHHHHH-HHGGGGGG-----GH-HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHCSSSSCCGG
T ss_pred HHHHHHHH-HhchhHHH-----HH-HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHH-HccCcccccch
Confidence 99999877 44433322 23 3455666555432110000011111 12222233333333222 11100 0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHhh
Q 046443 1347 LTTFCKLWLGVLSRMEKYMKVKVRGKKSEKLQEIVPELLKNTLLIM 1392 (1469)
Q Consensus 1347 ~~~f~~lWl~iLd~~~~~m~~~~~~~~s~~L~Eav~EsLKN~LlvM 1392 (1469)
...|......++.++.+....+ .+++.+..++...|..+...+
T Consensus 787 ~~~~~~~~~~i~~~l~~~~~~~---~~~~~vr~~a~~~l~~l~~~~ 829 (876)
T 1qgr_A 787 VMLVQPRVEFILSFIDHIAGDE---DHTDGVVACAAGLIGDLCTAF 829 (876)
T ss_dssp GGGSGGGHHHHHHHHHHHHTCS---CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHh
Confidence 1234444555666665554321 115678888888888887766
No 10
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=76.69 E-value=1.1e+02 Score=35.69 Aligned_cols=300 Identities=14% Similarity=0.095 Sum_probs=147.4
Q ss_pred hhHHHHHHHHHHhhcchhhH-HhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCChhHH-HHHHHHHHHHHHh
Q 046443 1037 AVFCLELLIAITLNNRDRIV-LLWQGVYEHIANIVQSTVMPCALVEKAVFGLLRICQRLLPYKENL-ADELLRSLQLVLK 1114 (1469)
Q Consensus 1037 ~~F~Le~lv~v~l~N~~Ri~-~~W~~v~~hL~~i~~~~~~~~~l~erAv~~L~rl~~rll~~~e~l-~~~lL~~L~~l~~ 1114 (1469)
+...+..+..++..+.+... .....+...|..++.+. ...+++.|+..|..++...-..+..+ ....+.+|-.++.
T Consensus 82 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~ 159 (450)
T 2jdq_A 82 QFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS 159 (450)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc
Confidence 44556666666654433221 23345566666666543 34567777777776653110001111 1123444444444
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCccc---CccChHHHHHHHHhhhcCCcchHHHHHHHHHHHhcCCCCChhhHHH--
Q 046443 1115 LDARVADAYCEQITQEVSRLVKANATHIR---SQMGWRTITSLLSITARHPEASEAGFEALLFIMSDGTHLLPANYVL-- 1189 (1469)
Q Consensus 1115 l~~~v~~~v~~~Il~~L~~ll~~~~~~i~---s~~gW~~If~iL~~~~~~~~~~~~aFe~L~lIi~d~~~l~~~nf~~-- 1189 (1469)
-+.+ ..+++..+.+|..+......... .....+.+..+|. ..+++....+..+|..++... +++...
T Consensus 160 ~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~--~~~~~v~~~a~~~L~~l~~~~----~~~~~~~~ 231 (450)
T 2jdq_A 160 KQNR--LTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF--VSDTDVLADACWALSYLSDGP----NDKIQAVI 231 (450)
T ss_dssp SCCC--HHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT--CCCHHHHHHHHHHHHHHTSSS----HHHHHHHH
T ss_pred CCCC--HHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHCCC----cHHHHHHH
Confidence 2222 46888889999988855421110 1235555555553 122333445666666555431 222211
Q ss_pred ---HHHHHHHHHHhhcCchhhHHHHHHHHHhhhHhhhhhhhhhhhccChhhhhhhhhhHHhHHHHHHHHHHHhhcCCcHH
Q 046443 1190 ---CIDSARQFAESRVGQAERSVRALELMSGSVDCLARWGREAKESMGEDEVAKLSQDIGEMWLRLVQALRKVCLDQRED 1266 (1469)
Q Consensus 1190 ---cVd~l~~F~~q~~~~~~~Sl~AI~Ll~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLLq~La~lc~d~r~E 1266 (1469)
++..+..+... ...++-..|+..++++... . .+.. ..... ..++..|.++..++.++
T Consensus 232 ~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~----~---------~~~~--~~~~~---~~~l~~L~~ll~~~~~~ 291 (450)
T 2jdq_A 232 DAGVCRRLVELLMH--NDYKVVSPALRAVGNIVTG----D---------DIQT--QVILN---CSALQSLLHLLSSPKES 291 (450)
T ss_dssp HTTTHHHHHHHTTC--SCHHHHHHHHHHHHHHTTS----C---------HHHH--HHHHT---TTHHHHHHHHTTCSSHH
T ss_pred HcCcHHHHHHHHCC--CchhHHHHHHHHHHHHhhC----C---------hHHH--HHHHH---CccHHHHHHHHcCCCHH
Confidence 12222222221 1112223344333332210 0 0000 00000 02556667777788999
Q ss_pred HHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHHHHhhcCCcchhcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 046443 1267 VRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDYRNMEGTLILAMKLLSKVFLQLLHELSQ 1346 (1469)
Q Consensus 1267 VR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d~~~~~ET~~~al~lLskvFl~~L~~L~~ 1346 (1469)
||..|+.+|.++.. -.+.....+++..++|.|-++++.. + .+.+..|+..|+++-...-
T Consensus 292 vr~~a~~~L~~l~~------~~~~~~~~~~~~~~l~~L~~~l~~~------~----~~v~~~a~~~L~~l~~~~~----- 350 (450)
T 2jdq_A 292 IKKEACWTISNITA------GNRAQIQTVIDANIFPALISILQTA------E----FRTRKEAAWAITNATSGGS----- 350 (450)
T ss_dssp HHHHHHHHHHHHTT------SCHHHHHHHHHTTHHHHHHHHHHHS------C----HHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHc------CCHHHHHHHHHCCCHHHHHHHHhcC------C----HHHHHHHHHHHHHHHcCCC-----
Confidence 99999999988764 1344556677777778777665521 1 2556667777776643210
Q ss_pred hhhHHHHH-HHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHhh
Q 046443 1347 LTTFCKLW-LGVLSRMEKYMKVKVRGKKSEKLQEIVPELLKNTLLIM 1392 (1469)
Q Consensus 1347 ~~~f~~lW-l~iLd~~~~~m~~~~~~~~s~~L~Eav~EsLKN~LlvM 1392 (1469)
......++ .+++..+-.+++. ....+.+.+.+.|.|++..-
T Consensus 351 ~~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 351 AEQIKYLVELGCIKPLCDLLTV-----MDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHGGGS-----SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhc
Confidence 00111122 1344555555543 24567788888888877643
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=75.70 E-value=1.9e+02 Score=37.12 Aligned_cols=250 Identities=15% Similarity=0.065 Sum_probs=113.3
Q ss_pred HHHHHHHHHhhcc-hhhHHhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHhcChH
Q 046443 1040 CLELLIAITLNNR-DRIVLLWQGVYEHIANIVQSTVMPCALVEKAVFGLLRICQRLLPYKENLADELLRSLQLVLKLDAR 1118 (1469)
Q Consensus 1040 ~Le~lv~v~l~N~-~Ri~~~W~~v~~hL~~i~~~~~~~~~l~erAv~~L~rl~~rll~~~e~l~~~lL~~L~~l~~l~~~ 1118 (1469)
.+..+..++..-. +.+....+.+...+..++.+......+.+.|+..+..++..+-..-....+.++..+...+.-..
T Consensus 584 ~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~- 662 (876)
T 1qgr_A 584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYA- 662 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcc-
Confidence 3444444443322 44444556666666666654310123455566555555543211001123345544444443221
Q ss_pred HHHHHHHHHHHHHHHHHhcccCcccCccChHHHHHHHHhhhcC----CcchHHHHHHHHHHHhcC-CCCChhhHHHHHHH
Q 046443 1119 VADAYCEQITQEVSRLVKANATHIRSQMGWRTITSLLSITARH----PEASEAGFEALLFIMSDG-THLLPANYVLCIDS 1193 (1469)
Q Consensus 1119 v~~~v~~~Il~~L~~ll~~~~~~i~s~~gW~~If~iL~~~~~~----~~~~~~aFe~L~lIi~d~-~~l~~~nf~~cVd~ 1193 (1469)
...++...+.++..++...+..+.. .+..++..|...... ++....+..++.-|+... ....+ -+..++..
T Consensus 663 -~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~-~l~~~~~~ 738 (876)
T 1qgr_A 663 -EYQVCLAAVGLVGDLCRALQSNIIP--FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKK-YLEVVLNT 738 (876)
T ss_dssp -THHHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGG-GHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHH-HHHHHHHH
Confidence 1457788888888888877766665 566777666444332 233345566666554321 11111 12223333
Q ss_pred HHHHHHhhcC--ch-------hhHHHHHHHHHhhhHhhhhhhhhhhhccChhhhhhhhhhHHhHHHHHHHHHHHhhcCC-
Q 046443 1194 ARQFAESRVG--QA-------ERSVRALELMSGSVDCLARWGREAKESMGEDEVAKLSQDIGEMWLRLVQALRKVCLDQ- 1263 (1469)
Q Consensus 1194 l~~F~~q~~~--~~-------~~Sl~AI~Ll~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLLq~La~lc~d~- 1263 (1469)
+..-...+.+ .- ++-..+++.+..+...+.. .. .... .. ......+.-.++.-+.+.+.|+
T Consensus 739 l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~---~~-~~~~-~~----~~~~~~~~~~i~~~l~~~~~~~~ 809 (876)
T 1qgr_A 739 LQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKG---DQ-ENVH-PD----VMLVQPRVEFILSFIDHIAGDED 809 (876)
T ss_dssp HHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---SS-SSCC-GG----GGGSGGGHHHHHHHHHHHHTCSC
T ss_pred HHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcc---Cc-cccc-ch----HHHHHHHHHHHHHHHHHHhcCCC
Confidence 2221111110 00 1111122222222111100 00 0000 00 0111233334555566666777
Q ss_pred -cHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHH
Q 046443 1264 -REDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDL 1307 (1469)
Q Consensus 1264 -r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~L 1307 (1469)
..+||+.|+.+|-.... ..|. +.....+.+.++-|++.+.
T Consensus 810 ~~~~vr~~a~~~l~~l~~-~~~~---~~~~~~~~~~~i~~ll~~~ 850 (876)
T 1qgr_A 810 HTDGVVACAAGLIGDLCT-AFGK---DVLKLVEARPMIHELLTEG 850 (876)
T ss_dssp CCHHHHHHHHHHHHHHHH-HHCT---HHHHHHHTSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH-HhCc---HHHHHHHhcHHHHHHHHHH
Confidence 78999999999999887 3332 0223333456677777644
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=74.76 E-value=80 Score=36.96 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=64.8
Q ss_pred ChHHHHHHHHhhhcCC----cchHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHHHHHhhcCchhhHHHHHHHHHhhhHh
Q 046443 1147 GWRTITSLLSITARHP----EASEAGFEALLFIMSDG-THLLPANYVLCIDSARQFAESRVGQAERSVRALELMSGSVDC 1221 (1469)
Q Consensus 1147 gW~~If~iL~~~~~~~----~~~~~aFe~L~lIi~d~-~~l~~~nf~~cVd~l~~F~~q~~~~~~~Sl~AI~Ll~~~~~~ 1221 (1469)
.|+.++..|-....++ .....++.+|..++.+. .......+..++..+............+-..|+..+..++.+
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 7887777665444333 34557888998888765 222233344455554444433210123333455444333221
Q ss_pred hhhhhhhhhhccChhhhhhhhhhHHhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 046443 1222 LARWGREAKESMGEDEVAKLSQDIGEMWLRLVQALRKVCLDQREDVRNHALLSLQKCLT 1280 (1469)
Q Consensus 1222 l~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLLq~La~lc~d~r~EVR~~AiqtL~r~Ll 1280 (1469)
+.. . ...+ ..+-.+++.|.+...++..+||..|+..|..+..
T Consensus 205 ~~~------------~----~~~~-~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 246 (462)
T 1ibr_B 205 TKA------------N----FDKE-SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246 (462)
T ss_dssp THH------------H----HTSH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHH------------h----hhhh-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 110 0 0001 1223356677777789999999999999999886
No 13
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=74.72 E-value=1.4e+02 Score=36.18 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHhcccCcccCccChHHHHHHHHhhhcCCc--chHHHHHHHHHHHhcCCCCChhhHH-HHHHHHHHH
Q 046443 1121 DAYCEQITQEVSRLVKANATHIRSQMGWRTITSLLSITARHPE--ASEAGFEALLFIMSDGTHLLPANYV-LCIDSARQF 1197 (1469)
Q Consensus 1121 ~~v~~~Il~~L~~ll~~~~~~i~s~~gW~~If~iL~~~~~~~~--~~~~aFe~L~lIi~d~~~l~~~nf~-~cVd~l~~F 1197 (1469)
.+++..+.++|..+... +.....|..++.+|.....+++ ....+.++|..++... ++..+. .++..+...
T Consensus 62 ~~vr~~~~~~L~~~~~~----~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~---~~~~~~~~l~~~l~~l 134 (588)
T 1b3u_A 62 DEVLLALAEQLGTFTTL----VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH---SPSDLEAHFVPLVKRL 134 (588)
T ss_dssp HHHHHHHHHHHTTCSGG----GTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTS---CHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHH
Confidence 35677777766544432 2223357777777766554443 3456788888777643 333332 233444444
Q ss_pred HHhhcCchhhHHHHHHHHHhhhHhhhhhhhhhhhccChhhhhhhhhhHHhHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 046443 1198 AESRVGQAERSVRALELMSGSVDCLARWGREAKESMGEDEVAKLSQDIGEMWLRLVQALRKVCLDQREDVRNHALLSLQK 1277 (1469)
Q Consensus 1198 ~~q~~~~~~~Sl~AI~Ll~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLLq~La~lc~d~r~EVR~~AiqtL~r 1277 (1469)
.... + ...-..|+.++..+...+ . ...|-.++..|..+|.|+.++||..|++.|-+
T Consensus 135 ~~~~-~-~~~R~~a~~~l~~~~~~~-------------------~---~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~ 190 (588)
T 1b3u_A 135 AGGD-W-FTSRTSACGLFSVCYPRV-------------------S---SAVKAELRQYFRNLCSDDTPMVRRAAASKLGE 190 (588)
T ss_dssp HTCS-S-HHHHHHHGGGHHHHTTTS-------------------C---HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred hcCC-C-cHHHHHHHHHHHHHHHhc-------------------C---HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4321 1 111122333332211100 0 12344566666678899999999999999998
Q ss_pred hhccccCCCCChhhHHHHHHHhhhhhhHHHH
Q 046443 1278 CLTGVDGIHLPHGLWLQCFDMVIFTMLDDLL 1308 (1469)
Q Consensus 1278 ~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll 1308 (1469)
+.. . ++... +...++|++..++
T Consensus 191 l~~-~----~~~~~----~~~~l~~~l~~~~ 212 (588)
T 1b3u_A 191 FAK-V----LELDN----VKSEIIPMFSNLA 212 (588)
T ss_dssp HHH-T----SCHHH----HHHTHHHHHHHHH
T ss_pred HHH-H----hcHHh----HHHHHHHHHHHHh
Confidence 776 2 22322 2345667776664
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=73.74 E-value=2.1e+02 Score=36.66 Aligned_cols=301 Identities=7% Similarity=0.039 Sum_probs=140.0
Q ss_pred hHHhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCh-h----HHHHHHHHHHHHHHhc-----C---hHHHH
Q 046443 1055 IVLLWQGVYEHIANIVQSTVMPCALVEKAVFGLLRICQRLLPYK-E----NLADELLRSLQLVLKL-----D---ARVAD 1121 (1469)
Q Consensus 1055 i~~~W~~v~~hL~~i~~~~~~~~~l~erAv~~L~rl~~rll~~~-e----~l~~~lL~~L~~l~~l-----~---~~v~~ 1121 (1469)
+....+.++..|...+........++..|+.++..++.. .... . .+...++..+.....+ . .+...
T Consensus 492 l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~ 570 (861)
T 2bpt_A 492 IYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEY-ATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQ 570 (861)
T ss_dssp GGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH-CCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH-cchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHH
Confidence 334556666677666654222234455555555555542 2211 1 1122233333322111 1 11234
Q ss_pred HHHHHHHHHHHHHHhcccCcccCccChHHHHHHHHhhhcC--C-cchHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHHH
Q 046443 1122 AYCEQITQEVSRLVKANATHIRSQMGWRTITSLLSITARH--P-EASEAGFEALLFIMSDGT-HLLPANYVLCIDSARQF 1197 (1469)
Q Consensus 1122 ~v~~~Il~~L~~ll~~~~~~i~s~~gW~~If~iL~~~~~~--~-~~~~~aFe~L~lIi~d~~-~l~~~nf~~cVd~l~~F 1197 (1469)
.++..++++|..++...+..+.. .-..++..+...... + .....++.++..++.... ++. .-+..++..+..+
T Consensus 571 ~~~~~~~~~l~~l~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~-~~l~~i~~~l~~~ 647 (861)
T 2bpt_A 571 ELQSNILTVLAAVIRKSPSSVEP--VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFE-KYLETFSPYLLKA 647 (861)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGG--GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHH
Confidence 56778888898888877765543 334444443332222 2 334456666665554321 111 1123344444444
Q ss_pred HHhhcCchhhHHHHHHHHHhhhHhhhhhhhhhhhccChhhhhhhhhhHHhHHHHHHHHHHHhhcCCc--HHHHHHHHHHH
Q 046443 1198 AESRVGQAERSVRALELMSGSVDCLARWGREAKESMGEDEVAKLSQDIGEMWLRLVQALRKVCLDQR--EDVRNHALLSL 1275 (1469)
Q Consensus 1198 ~~q~~~~~~~Sl~AI~Ll~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLLq~La~lc~d~r--~EVR~~AiqtL 1275 (1469)
.+.+. .++-..|+.++..+...+. . ....+--.++..|.+...++. ++||..|+.+|
T Consensus 648 l~~~~--~~vr~~a~~~l~~l~~~~~------------~-------~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l 706 (861)
T 2bpt_A 648 LNQVD--SPVSITAVGFIADISNSLE------------E-------DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVF 706 (861)
T ss_dssp HHCTT--SHHHHHHHHHHHHHHHHTG------------G-------GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred hcccc--HHHHHHHHHHHHHHHHHhc------------h-------hccchHHHHHHHHHHHhCCccccHhhhHHHHHHH
Confidence 33221 2344456665544332110 0 111222334444555555554 89999999999
Q ss_pred HHhhccccCCCCChhhHHHHHHHhhhhhhHHHHHHhhcCCcchhc-chHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q 046443 1276 QKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDYR-NMEGTLILAMKLLSKVFLQLLHELSQLTTFCKLW 1354 (1469)
Q Consensus 1276 ~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d~~-~~~ET~~~al~lLskvFl~~L~~L~~~~~f~~lW 1354 (1469)
-++.. ..|. .....+..++ |.+....+........|.. -..+.|.-++..++.+.. .+..- ...|...-
T Consensus 707 ~~l~~-~~~~-----~~~~~l~~~l-~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~-~l~~~--~~~~~~~~ 776 (861)
T 2bpt_A 707 GDIAS-NIGA-----DFIPYLNDIM-ALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVA-GLHDK--PEALFPYV 776 (861)
T ss_dssp HHHHH-HHGG-----GGHHHHHHHH-HHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHH-HTTTC--HHHHGGGH
T ss_pred HHHHH-Hhhh-----hHHHHHHHHH-HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHH-HHccC--HHHHHHHH
Confidence 99887 3332 3444455444 5444433211000000110 112344444555554442 11100 12344455
Q ss_pred HHHHHHHHHHHHhhccCCc-chhHHHHHHHHHHHHHHhh
Q 046443 1355 LGVLSRMEKYMKVKVRGKK-SEKLQEIVPELLKNTLLIM 1392 (1469)
Q Consensus 1355 l~iLd~~~~~m~~~~~~~~-s~~L~Eav~EsLKN~LlvM 1392 (1469)
..+++.+.+.+.... .. ++.+.++....+..+...+
T Consensus 777 ~~i~~~l~~~~~d~~--~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 777 GTIFQFIAQVAEDPQ--LYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp HHHHHHHHHHHHCHH--HHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCcc--cCCcHHHHHHHHHHHHHHHHHc
Confidence 566666666653200 00 3567788888888877766
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=68.83 E-value=3e+02 Score=37.14 Aligned_cols=223 Identities=11% Similarity=0.046 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHhcccCcccCccChHHHHHHHHhhhcCCcc----hHHHHHHHHHHHhcCCCCChhhHH----HHHHH
Q 046443 1122 AYCEQITQEVSRLVKANATHIRSQMGWRTITSLLSITARHPEA----SEAGFEALLFIMSDGTHLLPANYV----LCIDS 1193 (1469)
Q Consensus 1122 ~v~~~Il~~L~~ll~~~~~~i~s~~gW~~If~iL~~~~~~~~~----~~~aFe~L~lIi~d~~~l~~~nf~----~cVd~ 1193 (1469)
.++......+..++...+..+.. .+..++..+.....++.. ...+...+..++.. ..++.|. .++..
T Consensus 449 ~vr~~~~~~L~~l~~~~~~~l~~--~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~---~~~~~~~~~l~~llp~ 523 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPGALTQ--HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCN---HSPQVFHPHVQALVPP 523 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTGG--GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHS---SCGGGGHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHchhhhHH--HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHh---CCHHHHHhHHHHHHHH
Confidence 45666777788888776666654 677777777665555432 22233333333332 2333332 23333
Q ss_pred HHHHHHhhcCchhhHHHHHHHHHhhhHhhhhhhhhhhhccChhhhhhhhhhHHhHHHHHHHHHHHhh--cCCcHHHHHHH
Q 046443 1194 ARQFAESRVGQAERSVRALELMSGSVDCLARWGREAKESMGEDEVAKLSQDIGEMWLRLVQALRKVC--LDQREDVRNHA 1271 (1469)
Q Consensus 1194 l~~F~~q~~~~~~~Sl~AI~Ll~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLLq~La~lc--~d~r~EVR~~A 1271 (1469)
+......+ . ..+...|+..+..+...+..+.. . . ......+.-.++..|.... .|+.++||..|
T Consensus 524 L~~~l~d~-~-~~v~~~al~~l~~l~~~~~~~~~---~----~-----~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a 589 (1230)
T 1u6g_C 524 VVACVGDP-F-YKITSEALLVTQQLVKVIRPLDQ---P----S-----SFDATPYIKDLFTCTIKRLKAADIDQEVKERA 589 (1230)
T ss_dssp HHHHHTCS-S-HHHHHHHHHHHHHHHHHHCCSSS---C----C-----CCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHH
T ss_pred HHHHHccc-c-hHHHHHHHHHHHHHHHHhcCccc---c----c-----ccchHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 33322221 1 12333456555444433322100 0 0 0011233444555555544 68899999999
Q ss_pred HHHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHHHHhhcCCcchhcchHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 046443 1272 LLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDYRNMEGTLILAMKLLSKVFLQLLHELSQLTTFC 1351 (1469)
Q Consensus 1272 iqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d~~~~~ET~~~al~lLskvFl~~L~~L~~~~~f~ 1351 (1469)
+.+|-.+.. .-|..+.+ . +..++ |+|.+.+.. +.+|..++..++++... . ...++.
T Consensus 590 ~~~lg~L~~-~~g~~~~~-~----~~~~l-~~L~~~l~~------------e~~r~~~~~al~~i~~~----~-~~~~~~ 645 (1230)
T 1u6g_C 590 ISCMGQIIC-NLGDNLGS-D----LPNTL-QIFLERLKN------------EITRLTTVKALTLIAGS----P-LKIDLR 645 (1230)
T ss_dssp HHHHHHHHH-HTGGGCCT-H----HHHHH-HHHHHHTTS------------SSHHHHHHHHHHHHTTC----S-SCCCCH
T ss_pred HHHHHHHHH-HhCchhhh-h----HHHHH-HHHHHHhcc------------chhHHHHHHHHHHHHhC----c-cccchH
Confidence 999999887 44433332 2 33232 444322221 12444455555543310 0 011334
Q ss_pred HHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHhh
Q 046443 1352 KLWLGVLSRMEKYMKVKVRGKKSEKLQEIVPELLKNTLLIM 1392 (1469)
Q Consensus 1352 ~lWl~iLd~~~~~m~~~~~~~~s~~L~Eav~EsLKN~LlvM 1392 (1469)
.....++..+..++.. ....+.+.+.+.|..++...
T Consensus 646 ~~~~~i~~~L~~~l~~-----~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 646 PVLGEGVPILASFLRK-----NQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp HHHHHHHHHHHHHTTS-----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHhcc
Confidence 4455555555555543 23345666666666665544
No 16
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=64.30 E-value=2.1e+02 Score=33.17 Aligned_cols=121 Identities=14% Similarity=0.185 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Q 046443 1058 LWQGVYEHIANIVQSTVMPCALVEKAVFGLLRICQRLLPY-KENLADELLRSLQLVLKLDARVADAYCEQITQEVSRLVK 1136 (1469)
Q Consensus 1058 ~W~~v~~hL~~i~~~~~~~~~l~erAv~~L~rl~~rll~~-~e~l~~~lL~~L~~l~~l~~~v~~~v~~~Il~~L~~ll~ 1136 (1469)
.|+.+...|...+.+.......++.|+..|..++.+.-.. -....+.++..+..++.-+. ....++...+.++..++.
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~-~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEE-PSNNVKLAATNALLNSLE 203 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTC-CCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHH
Confidence 6888888888877653102345666777777777654211 11223456666655554331 014678888899888764
Q ss_pred cccCcccCccChHHHHHHHHhhhcCC--cchHHHHHHHHHHHhcC
Q 046443 1137 ANATHIRSQMGWRTITSLLSITARHP--EASEAGFEALLFIMSDG 1179 (1469)
Q Consensus 1137 ~~~~~i~s~~gW~~If~iL~~~~~~~--~~~~~aFe~L~lIi~d~ 1179 (1469)
...........+..+..++.....++ +....+++++..++...
T Consensus 204 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp TTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 32222211111244455554443333 23456788888777554
No 17
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=63.79 E-value=2.4e+02 Score=38.14 Aligned_cols=236 Identities=12% Similarity=0.053 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHhhcchhhHHhHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCChhHH---HHHHHHHHHHHHh
Q 046443 1038 VFCLELLIAITLNNRDRIVLLWQGVYEHIANIVQSTVMPCALVEKAVFGLLRICQRLLPYKENL---ADELLRSLQLVLK 1114 (1469)
Q Consensus 1038 ~F~Le~lv~v~l~N~~Ri~~~W~~v~~hL~~i~~~~~~~~~l~erAv~~L~rl~~rll~~~e~l---~~~lL~~L~~l~~ 1114 (1469)
.-++..+.+++....+.+...++.+...+...+.+.......+..|+..+..++. ... .+.+ .+.++..+-..+.
T Consensus 452 ~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~-~~~-~~~~~~~l~~llp~L~~~l~ 529 (1230)
T 1u6g_C 452 QCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILC-NHS-PQVFHPHVQALVPPVVACVG 529 (1230)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHH-SSC-GGGGHHHHTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHH-hCC-HHHHHhHHHHHHHHHHHHHc
Confidence 3455555566555555455566777777776666532112334444333433332 111 1111 1122222222121
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccC-------cccCccChHHHHHHHHhhh--cC--CcchHHHHHHHHHHHhcCCCCC
Q 046443 1115 LDARVADAYCEQITQEVSRLVKANAT-------HIRSQMGWRTITSLLSITA--RH--PEASEAGFEALLFIMSDGTHLL 1183 (1469)
Q Consensus 1115 l~~~v~~~v~~~Il~~L~~ll~~~~~-------~i~s~~gW~~If~iL~~~~--~~--~~~~~~aFe~L~lIi~d~~~l~ 1183 (1469)
++. ..++...+..+..+++..+. .+.. ....++..+-... .+ ++.-..+..++..++.......
T Consensus 530 -d~~--~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~--~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~ 604 (1230)
T 1u6g_C 530 -DPF--YKITSEALLVTQQLVKVIRPLDQPSSFDATP--YIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNL 604 (1230)
T ss_dssp -CSS--HHHHHHHHHHHHHHHHHHCCSSSCCCCCCHH--HHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGC
T ss_pred -ccc--hHHHHHHHHHHHHHHHHhcCcccccccchHH--HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchh
Confidence 111 24555566777777755443 2222 3345555443222 22 2223456677776765542211
Q ss_pred hhhHHHHHHHHHHHHHhhcCchhhHHHHHHHHHhhhHhhhhhhhhhhhccChhhhhhhhhhHHhHHHHHHHHHHHhhcCC
Q 046443 1184 PANYVLCIDSARQFAESRVGQAERSVRALELMSGSVDCLARWGREAKESMGEDEVAKLSQDIGEMWLRLVQALRKVCLDQ 1263 (1469)
Q Consensus 1184 ~~nf~~cVd~l~~F~~q~~~~~~~Sl~AI~Ll~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLLq~La~lc~d~ 1263 (1469)
...+..++..+..-..+.. .-....++++.+.... ...+ ...+.-.++..|.....++
T Consensus 605 ~~~~~~~l~~L~~~l~~e~-~r~~~~~al~~i~~~~--------------~~~~-------~~~~~~~i~~~L~~~l~~~ 662 (1230)
T 1u6g_C 605 GSDLPNTLQIFLERLKNEI-TRLTTVKALTLIAGSP--------------LKID-------LRPVLGEGVPILASFLRKN 662 (1230)
T ss_dssp CTHHHHHHHHHHHHTTSSS-HHHHHHHHHHHHTTCS--------------SCCC-------CHHHHHHHHHHHHHHTTSC
T ss_pred hhhHHHHHHHHHHHhccch-hHHHHHHHHHHHHhCc--------------cccc-------hHHHHHHHHHHHHHHHHhC
Confidence 2345555554433222110 0011233333321100 0001 1122234666667777788
Q ss_pred cHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhh
Q 046443 1264 REDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTML 1304 (1469)
Q Consensus 1264 r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLL 1304 (1469)
.+.+|..|+.+|.+++. .++..++......++. .+.|++
T Consensus 663 ~~~~r~~a~~al~~l~~-~~~~~~~~~~v~~~l~-~ll~ll 701 (1230)
T 1u6g_C 663 QRALKLGTLSALDILIK-NYSDSLTAAMIDAVLD-ELPPLI 701 (1230)
T ss_dssp CHHHHHHHHHHHHHHHH-HCCTTCCHHHHHHHHT-TCGGGS
T ss_pred CHHHHHHHHHHHHHHHh-cccccCCHHHHHHHHH-HHHhhc
Confidence 99999999999999998 6666666555555553 333554
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=62.63 E-value=2.2e+02 Score=34.19 Aligned_cols=71 Identities=17% Similarity=0.023 Sum_probs=47.8
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHHHHhhcCCcchhcchHHHHHHHHH
Q 046443 1252 LVQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDYRNMEGTLILAMK 1331 (1469)
Q Consensus 1252 LLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d~~~~~ET~~~al~ 1331 (1469)
++..|.++..++.++||..|+.+|-++.. -.+..-..+++..++|.|-.++... .-.+.+..|+.
T Consensus 287 ~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~------~~~~~~~~~~~~~~l~~L~~lL~~~---------~~~~v~~~A~~ 351 (528)
T 4b8j_A 287 VCPRLVELLLHPSPSVLIPALRTVGNIVT------GDDAQTQCIIDHQALPCLLSLLTQN---------LKKSIKKEACW 351 (528)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTT------SCHHHHHHHHTTTHHHHHHHHHHSC---------CCHHHHHHHHH
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHc------CCHHHHHHHHHhhhHHHHHHHHcCC---------CcHHHHHHHHH
Confidence 45566677778889999999999998765 1244556677777888887776521 01244555666
Q ss_pred HHHHHH
Q 046443 1332 LLSKVF 1337 (1469)
Q Consensus 1332 lLskvF 1337 (1469)
.|+.+-
T Consensus 352 ~L~nl~ 357 (528)
T 4b8j_A 352 TISNIT 357 (528)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
No 19
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=57.96 E-value=2.3e+02 Score=36.56 Aligned_cols=134 Identities=14% Similarity=0.138 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhcccCcccCccChHHHHHHHHhhhcCCc--chHHHHHHHHHHHhcCCCC-C----hhhHHHHHHH
Q 046443 1121 DAYCEQITQEVSRLVKANATHIRSQMGWRTITSLLSITARHPE--ASEAGFEALLFIMSDGTHL-L----PANYVLCIDS 1193 (1469)
Q Consensus 1121 ~~v~~~Il~~L~~ll~~~~~~i~s~~gW~~If~iL~~~~~~~~--~~~~aFe~L~lIi~d~~~l-~----~~nf~~cVd~ 1193 (1469)
..++..+.+++..+..... ...|+.++..|.....+++ ....++.+|..|+.+.... . ...+..++..
T Consensus 104 ~~vr~~~a~~i~~ia~~~~-----~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~ 178 (852)
T 4fdd_A 104 PLIRATVGILITTIASKGE-----LQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPK 178 (852)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----TTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-----ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHH
Confidence 4688899999988886542 2489888887766555443 3456788888888764321 1 1113334433
Q ss_pred HHHHHHhhcCchhhHHHHHHHHHhhhHhhhhhhhhhhhccChhhhhhhhhhHHhHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 046443 1194 ARQFAESRVGQAERSVRALELMSGSVDCLARWGREAKESMGEDEVAKLSQDIGEMWLRLVQALRKVCLDQREDVRNHALL 1273 (1469)
Q Consensus 1194 l~~F~~q~~~~~~~Sl~AI~Ll~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLLq~La~lc~d~r~EVR~~Aiq 1273 (1469)
+.++.... ..++-..|+..+...... . .......+-.++..|.+...|+.++||..|+.
T Consensus 179 l~~~l~~~--~~~vR~~A~~aL~~~~~~----~---------------~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~ 237 (852)
T 4fdd_A 179 FLQFFKHS--SPKIRSHAVACVNQFIIS----R---------------TQALMLHIDSFIENLFALAGDEEPEVRKNVCR 237 (852)
T ss_dssp HTTTTTCS--SHHHHHHHHHHHHTTTTT----T---------------CHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHhc----c---------------cHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 32222211 113333344433221110 0 00112233456777777888999999999999
Q ss_pred HHHHhhc
Q 046443 1274 SLQKCLT 1280 (1469)
Q Consensus 1274 tL~r~Ll 1280 (1469)
+|.++..
T Consensus 238 ~L~~l~~ 244 (852)
T 4fdd_A 238 ALVMLLE 244 (852)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998876
No 20
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=56.27 E-value=37 Score=39.61 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHh
Q 046443 1256 LRKVCLDQREDVRNHALLSLQKC 1278 (1469)
Q Consensus 1256 La~lc~d~r~EVR~~AiqtL~r~ 1278 (1469)
+-.+..|+.+-|+..||+||-++
T Consensus 329 ie~li~d~n~sI~t~Aittllkt 351 (355)
T 3tjz_B 329 LENLVTDANRSIATLAITTLLKT 351 (355)
T ss_dssp -----------------------
T ss_pred HHHHccCCcHhHHHHHHHHhhhc
Confidence 34566799999999999999765
No 21
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=54.45 E-value=1.3e+02 Score=31.57 Aligned_cols=71 Identities=20% Similarity=0.132 Sum_probs=49.3
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHHHHhhcCCcchhcchHHHHHHHHH
Q 046443 1252 LVQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDYRNMEGTLILAMK 1331 (1469)
Q Consensus 1252 LLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d~~~~~ET~~~al~ 1331 (1469)
.+..|.++..++.++||..|+.+|.++.. -++..-..+.+..++|.|-++++. .+ .+.+..|+.
T Consensus 171 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~------~~~~~~~~l~~~~~i~~L~~ll~~------~~----~~v~~~a~~ 234 (252)
T 4hxt_A 171 GVEVLVKLLTSTDSEVQKEAARALANIAS------GPTSAIKAIVDAGGVEVLQKLLTS------TD----SEVQKEAQR 234 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTT------SBHHHHHHHHHTTHHHHHHHGGGC------SC----HHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHc------CCHHHHHHHHHCCCHHHHHHHHCC------Cc----HHHHHHHHH
Confidence 45556666668889999999999999765 134456677777788888777541 11 266777777
Q ss_pred HHHHHHH
Q 046443 1332 LLSKVFL 1338 (1469)
Q Consensus 1332 lLskvFl 1338 (1469)
.|+++.-
T Consensus 235 ~L~~l~~ 241 (252)
T 4hxt_A 235 ALENIKS 241 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7777553
No 22
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=48.15 E-value=5.3e+02 Score=32.73 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Q 046443 1059 WQGVYEHIANIVQSTVMPCALVEKAVFGLLRICQRLLPY--KENLADELLRSLQLVLKLDARVADAYCEQITQEVSRLVK 1136 (1469)
Q Consensus 1059 W~~v~~hL~~i~~~~~~~~~l~erAv~~L~rl~~rll~~--~e~l~~~lL~~L~~l~~l~~~v~~~v~~~Il~~L~~ll~ 1136 (1469)
-+.+...+...+.+. +..++..|..++-+++..+-.. .....+.++..+-..+.-+ ..++......+..+++
T Consensus 409 l~~il~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~----~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 409 VHQALPSILNLMNDQ--SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH----PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC----hHHHHHHHHHHHHHHH
Confidence 344555555555443 3456666777777777543211 1122334444443333222 3567777777877776
Q ss_pred ccc----CcccCccChHHHHHHHHhhhcC----CcchHHHHHHHHHHHhcC
Q 046443 1137 ANA----THIRSQMGWRTITSLLSITARH----PEASEAGFEALLFIMSDG 1179 (1469)
Q Consensus 1137 ~~~----~~i~s~~gW~~If~iL~~~~~~----~~~~~~aFe~L~lIi~d~ 1179 (1469)
..+ ..+.. .-+.|+..|.....+ ++.-..+++++..++...
T Consensus 483 ~~~~~~~~~l~~--~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 483 QLAEATPSPIYN--FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp HHSSSSSCGGGG--GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred hcccccchhhHH--HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence 654 33443 445555444333332 223346888888777654
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=40.70 E-value=5.4e+02 Score=30.74 Aligned_cols=112 Identities=18% Similarity=0.207 Sum_probs=68.5
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHHHHhhcCCcchhcchHHHHHHHHH
Q 046443 1252 LVQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDYRNMEGTLILAMK 1331 (1469)
Q Consensus 1252 LLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d~~~~~ET~~~al~ 1331 (1469)
++..|..+..++.++||..|+.+|.++.. ..+.....+++..++|.|-.++... -.+.+..|+.
T Consensus 342 ~l~~L~~lL~~~~~~vr~~A~~aL~~l~~------~~~~~~~~~~~~~~l~~L~~lL~~~----------~~~v~~~a~~ 405 (530)
T 1wa5_B 342 VLPALRLLLSSPKENIKKEACWTISNITA------GNTEQIQAVIDANLIPPLVKLLEVA----------EYKTKKEACW 405 (530)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTT------SCHHHHHHHHHTTCHHHHHHHHHHS----------CHHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHc------CCHHHHHHHHHCCCHHHHHHHHhcC----------CHHHHHHHHH
Confidence 55566677778899999999999998654 1244555667767778777776421 1255666777
Q ss_pred HHHHHHHH------HHHHhhchhhHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHhh
Q 046443 1332 LLSKVFLQ------LLHELSQLTTFCKLWLGVLSRMEKYMKVKVRGKKSEKLQEIVPELLKNTLLIM 1392 (1469)
Q Consensus 1332 lLskvFl~------~L~~L~~~~~f~~lWl~iLd~~~~~m~~~~~~~~s~~L~Eav~EsLKN~LlvM 1392 (1469)
.|+++... +...+.+ .+++..+..++.. ....+.+.+...|.|++..-
T Consensus 406 aL~~l~~~~~~~~~~~~~l~~--------~~~l~~L~~ll~~-----~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 406 AISNASSGGLQRPDIIRYLVS--------QGCIKPLCDLLEI-----ADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHTTTCTHHHHHHHH--------TTCHHHHHHHTTT-----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHH--------CCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhh
Confidence 77766442 1111111 1244555555543 24557777777777776543
No 24
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=38.98 E-value=3.2e+02 Score=30.36 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 046443 353 VPLFALRLINSAIELGGPAIRRHPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYHHLRTE----LKLQLEAFF 428 (1469)
Q Consensus 353 ~~~~~L~Li~~~le~~g~~~~~~p~l~~li~d~l~~~Ll~~~~s~~~~i~~~~lri~~~L~~~~r~~----Lk~q~E~fl 428 (1469)
-+.=|++.|..+++. .|+-+...-|-+|+.+---+.+.++.++...+.++..++..++.. ...|...|+
T Consensus 62 ~~~~ale~L~~~l~~-------~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~l 134 (266)
T 2of3_A 62 QHLAALDSLVRLADT-------SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFV 134 (266)
T ss_dssp HHHHHHHHHHHHHHH-------CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh-------ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 346799999998875 344444455556775532224668899999999999999888774 345678999
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHh
Q 046443 429 SCVILRLAQSRHGASYQQQEVAMEALVDFC 458 (1469)
Q Consensus 429 ~~l~~~l~~~~~~~~~~~r~l~LE~l~~l~ 458 (1469)
..++.++.+++ -.-|+.+-+++..++
T Consensus 135 P~LveKlGd~k----~~vR~~~r~il~~l~ 160 (266)
T 2of3_A 135 PYLLLKTGEAK----DNMRTSVRDIVNVLS 160 (266)
T ss_dssp HHHHHGGGCSS----HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCh----HHHHHHHHHHHHHHH
Confidence 99999997755 345777777776554
No 25
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=38.34 E-value=68 Score=39.04 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHH
Q 046443 1250 LRLVQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLL 1308 (1469)
Q Consensus 1250 ~pLLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll 1308 (1469)
-.++..|..++.|+..+||..|+.+|.++.. . +++. -++..++|++..+.
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~-~----~~~~----~~~~~l~~~l~~l~ 135 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISH-E----HSPS----DLEAHFVPLVKRLA 135 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHT-T----SCHH----HHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-H----CCHH----HHHHHHHHHHHHHh
Confidence 3455555566778999999999999999876 2 2221 24456678886664
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=35.39 E-value=6.4e+02 Score=30.06 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=41.1
Q ss_pred cCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHHHHhhcCCcchhcchHHHHHHHHHHHHHHHH
Q 046443 1261 LDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDYRNMEGTLILAMKLLSKVFL 1338 (1469)
Q Consensus 1261 ~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d~~~~~ET~~~al~lLskvFl 1338 (1469)
.++.++||..|+.+|.++.. .+... +..-..++...++|.|-.+++.. + .+.+..++..|.+++.
T Consensus 393 ~~~~~~v~~~a~~aL~~l~~--~~~~~-~~~~~~l~~~~~l~~L~~ll~~~------~----~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 393 EVAEYKTKKEACWAISNASS--GGLQR-PDIIRYLVSQGCIKPLCDLLEIA------D----NRIIEVTLDALENILK 457 (530)
T ss_dssp HHSCHHHHHHHHHHHHHHHH--HTTTC-THHHHHHHHTTCHHHHHHHTTTC------C----HHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHh--cCCCc-HHHHHHHHHCCCHHHHHHHHhCC------C----HHHHHHHHHHHHHHHH
Confidence 45789999999999999876 22111 13445555666777776665411 1 2456667777776654
No 27
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=33.45 E-value=4.9e+02 Score=28.09 Aligned_cols=161 Identities=7% Similarity=0.057 Sum_probs=82.4
Q ss_pred HHHHHHHHHHH-HHhcccCcccCccChHHHHHHHHhhh-cCCc--chHHHHHHHHHHHhcCC--CCChhhHH-HHH-HHH
Q 046443 1123 YCEQITQEVSR-LVKANATHIRSQMGWRTITSLLSITA-RHPE--ASEAGFEALLFIMSDGT--HLLPANYV-LCI-DSA 1194 (1469)
Q Consensus 1123 v~~~Il~~L~~-ll~~~~~~i~s~~gW~~If~iL~~~~-~~~~--~~~~aFe~L~lIi~d~~--~l~~~nf~-~cV-d~l 1194 (1469)
-|...+..|.. +++++.....+...+..++..|.... .+++ ....|+.++..+++... .+.. .|. .++ ..+
T Consensus 32 eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~-~y~~~llp~ll 110 (249)
T 2qk1_A 32 DRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK-DYVSLVFTPLL 110 (249)
T ss_dssp HHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH-HHHHHHHHHHH
Confidence 45667777888 77665544421225556666665444 4443 45678899988886543 2321 332 333 223
Q ss_pred HHHHHhhcCchhhHHHHHHHHHhhhHhhhhhhhhhhhccChhhhhhhhhhHHhHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 046443 1195 RQFAESRVGQAERSVRALELMSGSVDCLARWGREAKESMGEDEVAKLSQDIGEMWLRLVQALRKVCLDQREDVRNHALLS 1274 (1469)
Q Consensus 1195 ~~F~~q~~~~~~~Sl~AI~Ll~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lW~pLLq~La~lc~d~r~EVR~~Aiqt 1274 (1469)
..+.+.+....+....|++-+ ...+.. .. . ..+--.++..|.....++.+.||..|+.+
T Consensus 111 ~~l~dkk~~V~~aa~~al~~i---~~~~~~------~~---------~---~~~l~~ll~~l~~~l~~k~~~vk~~al~~ 169 (249)
T 2qk1_A 111 DRTKEKKPSVIEAIRKALLTI---CKYYDP------LA---------S---SGRNEDMLKDILEHMKHKTPQIRMECTQL 169 (249)
T ss_dssp HGGGCCCHHHHHHHHHHHHHH---HHHSCT------TC---------T---TCTTHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHH---HHHccc------cc---------c---CCcHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 334332211112222333322 110000 00 0 00011355555555667788999999999
Q ss_pred HHHhhccccCCCCChhhHHHHHHHhhhhhhHHHH
Q 046443 1275 LQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLL 1308 (1469)
Q Consensus 1275 L~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll 1308 (1469)
|-+++. ..+.. +......+...+.|.+..++
T Consensus 170 l~~~~~-~~~~~--~~~l~~~l~~~iip~l~~~l 200 (249)
T 2qk1_A 170 FNASMK-EEKDG--YSTLQRYLKDEVVPIVIQIV 200 (249)
T ss_dssp HHHHHH-HCCSC--SHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHH-HcCCc--chhHHHHHHHHHHHHHHHHh
Confidence 999998 33321 23444555235567776665
No 28
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=30.95 E-value=5.3e+02 Score=27.77 Aligned_cols=184 Identities=11% Similarity=0.091 Sum_probs=102.4
Q ss_pred hHHHHHHHHH-HHhcCCCCC--hhhHHHHHHHHHHHHHhhcC--chhhHHHHHHHHHhhhHhhhhhhhhhhhccChhhhh
Q 046443 1165 SEAGFEALLF-IMSDGTHLL--PANYVLCIDSARQFAESRVG--QAERSVRALELMSGSVDCLARWGREAKESMGEDEVA 1239 (1469)
Q Consensus 1165 ~~~aFe~L~l-Ii~d~~~l~--~~nf~~cVd~l~~F~~q~~~--~~~~Sl~AI~Ll~~~~~~l~~~~~~~~~~~~~~~~~ 1239 (1469)
.+.|.+.|.. ++.+...+. ..+|...++.+......+.+ .+..++.+++.+. ..+.+
T Consensus 33 Rk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la---~~l~~--------------- 94 (249)
T 2qk1_A 33 RVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELIC---DKLKT--------------- 94 (249)
T ss_dssp HHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH---HHHCT---------------
T ss_pred HHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH---Hhccc---------------
Confidence 4566677776 665544444 45666667777666643222 1234455555442 21110
Q ss_pred hhhhhHH-hHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHHHHhhcCCcch
Q 046443 1240 KLSQDIG-EMWLRLVQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKD 1318 (1469)
Q Consensus 1240 ~~~~~~~-~lW~pLLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d 1318 (1469)
..+. .+--.++..+-....|....||.+|..+|..++...... .....-+.+++. |++.+ +
T Consensus 95 ---~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~-~~~~~l~~ll~~-l~~~l-------------~ 156 (249)
T 2qk1_A 95 ---PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL-ASSGRNEDMLKD-ILEHM-------------K 156 (249)
T ss_dssp ---TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT-CTTCTTHHHHHH-HHHHT-------------T
T ss_pred ---ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc-ccCCcHHHHHHH-HHHHH-------------c
Confidence 1122 344557778888889999999999998888887722110 000001233332 22222 1
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH-HHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHhhh
Q 046443 1319 YRNMEGTLILAMKLLSKVFLQLLHELSQLTTFCKLW-LGVLSRMEKYMKVKVRGKKSEKLQEIVPELLKNTLLIMK 1393 (1469)
Q Consensus 1319 ~~~~~ET~~~al~lLskvFl~~L~~L~~~~~f~~lW-l~iLd~~~~~m~~~~~~~~s~~L~Eav~EsLKN~LlvM~ 1393 (1469)
.+.| ..+..++..|+.++-..=.. -..|.... -.++..+.++|.. ...++.++..+.|-.+...+-
T Consensus 157 ~k~~-~vk~~al~~l~~~~~~~~~~---~~~l~~~l~~~iip~l~~~l~D-----~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 157 HKTP-QIRMECTQLFNASMKEEKDG---YSTLQRYLKDEVVPIVIQIVND-----TQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp CSSH-HHHHHHHHHHHHHHHHCCSC---SHHHHHHHTTTHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHHHC
T ss_pred CCCh-HHHHHHHHHHHHHHHHcCCc---chhHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHhC
Confidence 1234 56777888888776432100 02344545 5677777788864 345688888888877665554
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=29.38 E-value=2.1e+02 Score=30.01 Aligned_cols=111 Identities=17% Similarity=0.116 Sum_probs=69.8
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHHHHhhcCCcchhcchHHHHHHHHH
Q 046443 1252 LVQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDYRNMEGTLILAMK 1331 (1469)
Q Consensus 1252 LLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d~~~~~ET~~~al~ 1331 (1469)
.+..|.++..++.++||..|+.+|.++.. .++.....+.+...+|.|-.++.. .+ .+.+..|+.
T Consensus 129 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~------~~~~~~~~~~~~~~i~~L~~ll~~------~~----~~v~~~a~~ 192 (252)
T 4hxt_A 129 GVEVLVKLLTSTDSEVQKEAARALANIAS------GPDEAIKAIVDAGGVEVLVKLLTS------TD----SEVQKEAAR 192 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTT------SCHHHHHHHHHTTHHHHHHHHTTC------SC----HHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHc------CCHHHHHHHHHCcCHHHHHHHHCC------CC----HHHHHHHHH
Confidence 45556666678889999999999999765 134455677777788888777541 11 366667777
Q ss_pred HHHHHHHHH---HHHhhchhhHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHh
Q 046443 1332 LLSKVFLQL---LHELSQLTTFCKLWLGVLSRMEKYMKVKVRGKKSEKLQEIVPELLKNTLLI 1391 (1469)
Q Consensus 1332 lLskvFl~~---L~~L~~~~~f~~lWl~iLd~~~~~m~~~~~~~~s~~L~Eav~EsLKN~Llv 1391 (1469)
.|+.+-... ...+. -.+++..+-++++. .+..+++.+...|.|+...
T Consensus 193 ~L~~l~~~~~~~~~~l~--------~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 193 ALANIASGPTSAIKAIV--------DAGGVEVLQKLLTS-----TDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHTTSBHHHHHHHH--------HTTHHHHHHHGGGC-----SCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHH--------HCCCHHHHHHHHCC-----CcHHHHHHHHHHHHHHHcC
Confidence 776654211 11111 12345555555553 3456888888888886543
No 30
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=28.37 E-value=2.7e+02 Score=28.48 Aligned_cols=110 Identities=21% Similarity=0.151 Sum_probs=66.9
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHHHHhhcCCcchhcchHHHHHHHHH
Q 046443 1252 LVQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDYRNMEGTLILAMK 1331 (1469)
Q Consensus 1252 LLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d~~~~~ET~~~al~ 1331 (1469)
.+..|.++..++.++||..|+.+|.++.. -++.....+++...+|.|-++++. +-.+.+..|+.
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~------~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~v~~~a~~ 160 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIAS------GGNEQIQAVIDAGALPALVQLLSS----------PNEQILQEALW 160 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTT------SCHHHHHHHHHTTHHHHHHHHTTC----------SCHHHHHHHHH
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHc------CCHHHHHHHHHcCcHHHHHHHHcC----------CCHHHHHHHHH
Confidence 44556666678889999999999999765 234455667777778888777541 12356666776
Q ss_pred HHHHHHHHHHHHhhchhhHHHH-HHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHH
Q 046443 1332 LLSKVFLQLLHELSQLTTFCKL-WLGVLSRMEKYMKVKVRGKKSEKLQEIVPELLKNT 1388 (1469)
Q Consensus 1332 lLskvFl~~L~~L~~~~~f~~l-Wl~iLd~~~~~m~~~~~~~~s~~L~Eav~EsLKN~ 1388 (1469)
.|+.+-...-.. -..+ -.+.++.+.+++.. .+..+++.+-..|.|+
T Consensus 161 aL~~l~~~~~~~------~~~~~~~g~i~~L~~ll~~-----~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 161 ALSNIASGGNEQ------KQAVKEAGALEKLEQLQSH-----ENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHTSCHHH------HHHHHHTTHHHHHHHGGGC-----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHH------HHHHHHCCCHHHHHHHHhC-----CCHHHHHHHHHHHHHH
Confidence 666654221100 0111 12445555555553 3466788887777774
No 31
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=27.59 E-value=1.2e+02 Score=35.36 Aligned_cols=118 Identities=9% Similarity=0.006 Sum_probs=68.5
Q ss_pred HhHHHHH---HHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHH-hhhhhhHHHHHHhhcCCcchhcc
Q 046443 1246 GEMWLRL---VQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDM-VIFTMLDDLLEIAQGHSQKDYRN 1321 (1469)
Q Consensus 1246 ~~lW~pL---Lq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~-VLFPLLd~Ll~~~~~~s~~d~~~ 1321 (1469)
...|... +..|.+...++.+++|..|+..|.+++. .+. ...+..++.. .++|.|-+++... .
T Consensus 12 ~~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~-~~~----~~~~~~~~~~~~~i~~L~~~L~~~---------~ 77 (450)
T 2jdq_A 12 NMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLS-KEP----NPPIDEVISTPGVVARFVEFLKRK---------E 77 (450)
T ss_dssp ----------CHHHHHHHHSSCHHHHHHHHHHHHHHHH-SSS----SCCHHHHHTSTTHHHHHHHHHTCT---------T
T ss_pred HHhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhc-CCC----CCcHHHHHHcCCcHHHHHHHHCCC---------C
Confidence 3456555 6666666678889999999999999875 222 1234567776 6777776665311 1
Q ss_pred hHHHHHHHHHHHHHHHHH---HHHHhhchhhHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHH
Q 046443 1322 MEGTLILAMKLLSKVFLQ---LLHELSQLTTFCKLWLGVLSRMEKYMKVKVRGKKSEKLQEIVPELLKNTLL 1390 (1469)
Q Consensus 1322 ~~ET~~~al~lLskvFl~---~L~~L~~~~~f~~lWl~iLd~~~~~m~~~~~~~~s~~L~Eav~EsLKN~Ll 1390 (1469)
..+.+..|+..|+++... +...+ ...+++..+-++++. ....+++.+...|.|+..
T Consensus 78 ~~~v~~~a~~~L~~l~~~~~~~~~~~--------~~~~~i~~L~~lL~~-----~~~~vr~~a~~~L~~l~~ 136 (450)
T 2jdq_A 78 NCTLQFESAWVLTNIASGNSLQTRIV--------IQAGAVPIFIELLSS-----EFEDVQEQAVWALGNIAG 136 (450)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHH--------HHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHH--------HhCCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHcc
Confidence 245667777777776531 11111 123455555566554 245677777777777654
No 32
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=22.33 E-value=5.7e+02 Score=25.51 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=48.4
Q ss_pred HHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhccCC--CCCCHHHHHHHHHHHHHHhc
Q 046443 390 LMQFGLSMSPLILSMVCSIVLNLYHHLRTELKLQL--EAFFSCVILRLAQSR--HGASYQQQEVAMEALVDFCR 459 (1469)
Q Consensus 390 Ll~~~~s~~~~i~~~~lri~~~L~~~~r~~Lk~q~--E~fl~~l~~~l~~~~--~~~~~~~r~l~LE~l~~l~~ 459 (1469)
|-+-+.+.++.+--.+|.+.=.++...+.+...|+ +-|+..+...+.+.. ...+..-|+-+|+.+..|..
T Consensus 43 i~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 43 LAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 33333566777777788888888888888887777 678888765444321 12356778889999987753
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=21.86 E-value=3.8e+02 Score=27.27 Aligned_cols=110 Identities=18% Similarity=0.125 Sum_probs=65.8
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhhccccCCCCChhhHHHHHHHhhhhhhHHHHHHhhcCCcchhcchHHHHHHHHH
Q 046443 1252 LVQALRKVCLDQREDVRNHALLSLQKCLTGVDGIHLPHGLWLQCFDMVIFTMLDDLLEIAQGHSQKDYRNMEGTLILAMK 1331 (1469)
Q Consensus 1252 LLq~La~lc~d~r~EVR~~AiqtL~r~Ll~~~g~~l~~~~W~~~f~~VLFPLLd~Ll~~~~~~s~~d~~~~~ET~~~al~ 1331 (1469)
.+..|.++..++.++||..|+.+|.++.. -++..-..+++....|.|-.+++. .+ .+.+..|+.
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~------~~~~~~~~i~~~g~i~~L~~lL~~------~~----~~v~~~a~~ 118 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIAS------GGNEQIQAVIDAGALPALVQLLSS------PN----EQILQEALW 118 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTT------SCHHHHHHHHHTTCHHHHHHHTTC------SC----HHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhc------CCcHHHHHHHHCCCHHHHHHHHcC------Cc----HHHHHHHHH
Confidence 44555566667889999999999999764 123455666777777777666541 11 355666776
Q ss_pred HHHHHHHHH---HHHhhchhhHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHH
Q 046443 1332 LLSKVFLQL---LHELSQLTTFCKLWLGVLSRMEKYMKVKVRGKKSEKLQEIVPELLKNTLL 1390 (1469)
Q Consensus 1332 lLskvFl~~---L~~L~~~~~f~~lWl~iLd~~~~~m~~~~~~~~s~~L~Eav~EsLKN~Ll 1390 (1469)
.|+++-... ...+. -.+++..+-++++. .+..+++.+...|.|+..
T Consensus 119 ~L~~l~~~~~~~~~~~~--------~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 119 ALSNIASGGNEQIQAVI--------DAGALPALVQLLSS-----PNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHTTSCHHHHHHHH--------HTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHH--------HcCcHHHHHHHHcC-----CCHHHHHHHHHHHHHHHc
Confidence 666654211 11111 12344445555543 245677777778888754
No 34
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=21.63 E-value=80 Score=29.33 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=41.6
Q ss_pred HHHHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHh-hhccCCChhHHhhhhcCCchhHHHHHHHH
Q 046443 569 LMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFF-RYTAGLDKNLVGDFLGNHDEFCVQVLHEF 635 (1469)
Q Consensus 569 ~~~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl-~~~~~l~k~~igeyl~~~~~~~~~vl~~f 635 (1469)
+...++.||-++.. |...+--.+-..|..||.|| +...+++-..||+++|+++. .-|+++.
T Consensus 7 ~~~Va~~f~i~~~d----l~s~~R~~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdH--sTV~ha~ 68 (94)
T 1j1v_A 7 QKTVAEYYKIKVAD----LLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDH--TTVLHAC 68 (94)
T ss_dssp HHHHHHHTTCCHHH----HHSCCCCHHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCH--HHHHHHH
T ss_pred HHHHHHHhCCCHHH----HhCCCCCchhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCH--HHHHHHH
Confidence 34457788876643 33333222222478899996 45689999999999988875 7777764
No 35
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=21.53 E-value=7e+02 Score=25.94 Aligned_cols=121 Identities=17% Similarity=0.150 Sum_probs=76.7
Q ss_pred chhHHHHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 046443 352 DVPLFALRLINSAIELGGPAIRRHPRLLSLIQDELFRNLMQFGLSMSPLILSMVCSIVLNLYHHLRTELKLQLEA-FFSC 430 (1469)
Q Consensus 352 ~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~d~l~~~Ll~~~~s~~~~i~~~~lri~~~L~~~~r~~Lk~q~E~-fl~~ 430 (1469)
..+.-++..|...+.. ..+....+++....+.|++.+.++++.+-..+++++.+|...-...-..-++. .+..
T Consensus 27 ~~~~~a~~~L~~~l~~------~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 100 (252)
T 4db8_A 27 QEQLSATRKFSQILSD------GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 100 (252)
T ss_dssp SHHHHHHHHHHHHHHH------HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHcC------CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Confidence 4677888888665554 12334556777889999999888778888888888888775211111111111 2444
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHhcChhHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 046443 431 VILRLAQSRHGASYQQQEVAMEALVDFCRQKTFMVEMYANLDCDITCSNVFEDLANLLS 489 (1469)
Q Consensus 431 l~~~l~~~~~~~~~~~r~l~LE~l~~l~~~p~~~~~ly~NYDCd~~~~nlfe~l~~~L~ 489 (1469)
++. ++.+. ...-|+.++.+|..++..+..-.+..... ++...+++.|.
T Consensus 101 L~~-lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-------~~i~~L~~lL~ 148 (252)
T 4db8_A 101 LVQ-LLSSP---NEQILQEALWALSNIASGGNEQIQAVIDA-------GALPALVQLLS 148 (252)
T ss_dssp HHH-GGGCS---CHHHHHHHHHHHHHHTTSCHHHHHHHHHT-------THHHHHHHGGG
T ss_pred HHH-HHcCC---CHHHHHHHHHHHHHhhcCCchHHHHHHHC-------CCHHHHHHHHh
Confidence 443 34432 46788999999999999887764444432 45666666663
No 36
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=20.88 E-value=2.3e+02 Score=27.84 Aligned_cols=60 Identities=7% Similarity=-0.009 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhhcCChhhhHHHHHhCCCCCCCCChhhHhHHhhhccCCChhHHhhhhcCCchhHHHHHHHHHhc
Q 046443 562 RKYIKRRLMIGADHFNRDPKKGLEFLQGTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGT 638 (1469)
Q Consensus 562 ~k~~K~~~~~~~~~FN~~pk~gi~~l~~~~~i~~~~~p~~iA~fl~~~~~l~k~~igeyl~~~~~~~~~vl~~f~~~ 638 (1469)
++.+++.+..+.+.|.+++ +=. .+-.+||+ ..|++|..+=.|++++++.-..+++.+++.
T Consensus 11 ~~tr~~Il~aa~~l~~~~G-----------~~~--~tv~~Ia~----~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~ 70 (177)
T 3kkc_A 11 QKTKVAIYNAFISLLQEND-----------YSK--ITVQDVIG----LANVGRSTFYSHYESKEVLLKELCEDLFHH 70 (177)
T ss_dssp HHHHHHHHHHHHHHTTTSC-----------TTT--CCHHHHHH----HHCCCHHHHTTTCSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC-----------hhH--hhHHHHHH----HhCCcHhhHHHHcCCHHHHHHHHHHHHHHH
Confidence 3445556666777887654 321 25567774 678999999999999987766776666553
No 37
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=20.27 E-value=9.1e+02 Score=28.58 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=68.6
Q ss_pred chhHHHHHHHHHHHHhcCcccCCchHHHHHHHHHHHHHHHHhhcccc-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 046443 352 DVPLFALRLINSAIELGGPAIRRHPRLLSLIQDELFRNLMQFGLSMS-PLILSMVCSIVLNLYHHLRTELKLQLE-AFFS 429 (1469)
Q Consensus 352 ~~~~~~L~Li~~~le~~g~~~~~~p~l~~li~d~l~~~Ll~~~~s~~-~~i~~~~lri~~~L~~~~r~~Lk~q~E-~fl~ 429 (1469)
..+.-|+..|..++.... .|....+++..+.+.|++.+.+++ +.+-..++.++.++...-..+-+.=++ -.+.
T Consensus 89 ~~~~~A~~~L~~l~s~~~-----~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~ 163 (528)
T 4b8j_A 89 NLQLEATTQFRKLLSIER-----SPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVP 163 (528)
T ss_dssp HHHHHHHHHHHHHHTCSS-----SCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHhcCCC-----CchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHH
Confidence 467778887777665432 345666788888999999877765 777777778887776521111111111 1233
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHhcChhHHHHHHHh
Q 046443 430 CVILRLAQSRHGASYQQQEVAMEALVDFCRQKTFMVEMYAN 470 (1469)
Q Consensus 430 ~l~~~l~~~~~~~~~~~r~l~LE~l~~l~~~p~~~~~ly~N 470 (1469)
.++. ++.+. ...-|+.++.+|..++.+..-..+....
T Consensus 164 ~L~~-lL~~~---~~~v~~~a~~aL~~l~~~~~~~~~~i~~ 200 (528)
T 4b8j_A 164 IFVK-LLGSS---SDDVREQAVWALGNVAGDSPKCRDLVLA 200 (528)
T ss_dssp HHHH-HTTCS---CHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHH-HhcCC---CHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 3333 33332 4678999999999999885544444443
Done!